BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (284 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AE14 Protein ampE n=163 Tax=Enterobacteriaceae RepID=... 573 e-162 UniRef50_A6FBG6 AmpE protein n=1 Tax=Moritella sp. PE36 RepID=A6... 115 2e-24 UniRef50_Q15QI4 Signaling modulator of AmpD, AmpE n=1 Tax=Pseudo... 97 5e-19 UniRef50_A0Y6F9 Predicted inner membrane protein n=3 Tax=Alterom... 97 5e-19 UniRef50_A1S2H8 Signaling modulator of AmpD, AmpE n=20 Tax=Shewa... 96 1e-18 UniRef50_UPI0000E0F474 regulatory protein AmpE n=1 Tax=Glaciecol... 87 8e-16 UniRef50_A3WNI1 Membrane protein required for beta-lactamase ind... 80 6e-14 UniRef50_Q47US3 Putative inner membrane protein AmpE n=1 Tax=Col... 79 2e-13 UniRef50_Q5R0P3 Membrane protein required for beta-lactamase ind... 78 4e-13 UniRef50_Q7WVE4 Putative AmpE (Fragment) n=1 Tax=Xenorhabdus nem... 77 5e-13 UniRef50_UPI0001AEC65C regulatory protein AmpE n=1 Tax=Alteromon... 77 7e-13 UniRef50_B4RWU8 Putative ampicillin resistance protein n=1 Tax=A... 71 4e-11 UniRef50_Q12IR5 Signaling modulator of AmpD, AmpE n=1 Tax=Shewan... 70 1e-10 UniRef50_B8GLX9 Signaling modulator of AmpD, AmpE n=1 Tax=Thioal... 52 3e-05 UniRef50_C6BBL8 Cobalamin biosynthesis protein CobD n=61 Tax=Pro... 51 4e-05 UniRef50_B3R5E5 Putative COBALAMIN BIOSYNTHESIS TRANSMEMBRANE PR... 49 2e-04 UniRef50_A0YEZ0 Membrane protein required for beta-lactamase ind... 48 4e-04 UniRef50_Q2SKR8 Membrane protein required for beta-lactamase ind... 43 0.010 UniRef50_C1DPK8 Inner membrane protein n=51 Tax=Proteobacteria R... 43 0.013 UniRef50_A9KED3 Beta-lactamase induction protein n=6 Tax=Coxiell... 42 0.024 UniRef50_A4BKE4 Membrane protein required for beta-lactamase ind... 41 0.041 UniRef50_Q5ZVD4 Inner membrane protein AmpE n=6 Tax=Legionella R... 41 0.056 UniRef50_C3XB65 Cobalamin biosynthesis protein CobD n=2 Tax=Oxal... 40 0.083 >UniRef50_P0AE14 Protein ampE n=163 Tax=Enterobacteriaceae RepID=AMPE_ECOLI Length = 284 Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA Sbjct: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 Query: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP Sbjct: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 Query: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT Sbjct: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 Query: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA 240 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA Sbjct: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA 240 Query: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV Sbjct: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 >UniRef50_A6FBG6 AmpE protein n=1 Tax=Moritella sp. PE36 RepID=A6FBG6_9GAMM Length = 282 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 136/284 (47%), Gaps = 26/284 (9%) Query: 13 ERLFKLGEHWQLDHRLEAF-FRRVKHFSLGRTLG-MTIIAMGVTFL--LLRALQGVLFNV 68 ER+ L QLD+ L+ + F + F G G + IIA+ + LL AL G+ + + Sbjct: 13 ERVVHLSAKLQLDNVLQRYLFPLLPSFINGGLFGTLVIIALPAMLMYSLLDALTGLYYGI 72 Query: 69 PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREY 128 TL+ WLL+ L+ G R Y YL A SRND A+ A L + ER Sbjct: 73 FTLVTWLLLLLMSFGGSDYRRDYRQYLKALSRNDLEAKGMYANCLDV-------NSERFC 125 Query: 129 LRELQNA----LLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHR 184 L A L+WIN+RFY A +F+ +V GP+ L Y R++ +Y HH Sbjct: 126 STLLTTAVAQQLVWINYRFYFAVIFYFVVA---GPIGLTMYVVARSYH----KYVIQHHS 178 Query: 185 LQ---SGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQ 241 Q SGI V+ ++DW+P RL +AL+ + ALP S D T ++ +L ++ Sbjct: 179 KQLNRSGIHRVMRIVDWLPARLTMFGFALVAEEQAALPQSLRSWRDLSTPEFDLLGKVVY 238 Query: 242 FSLAREPHVDKV-ETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 + DK + V +AK+ V VIALLTI G ++ Sbjct: 239 LASKANVETDKCYDYTCYLVQLAKRNIIFFVTVIALLTINGTII 282 >UniRef50_Q15QI4 Signaling modulator of AmpD, AmpE n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15QI4_PSEA6 Length = 270 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 133/291 (45%), Gaps = 34/291 (11%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDH---RLEAFFRRVKHFSLGRTLGMTIIAMGV---- 53 MTL + LLVL ER+ +WQ D + A +++ S +L ++A+ + Sbjct: 1 MTLISLLLVLFVERVTTKSRYWQADFYSTKYLAAWQKRDGLSSDTSLLFLLVAIVIPPVI 60 Query: 54 --TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 FL Q + F + T ++ ++C+G VR Y YL AA+R D A + Sbjct: 61 IFCFLSFAVGQIIAFIISTTIL-----MVCMGCPSVRATYKCYLQAANRGDMEACSLYED 115 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 ++ CD + L+W N+R Y A + + ++ G G V Y RA Sbjct: 116 QI---------CDREQISATFGQNLVWQNYRHYAAVILFFVLLGAPGAVF---YVLARAV 163 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS 231 Q +A ++L +HVLDW+PVR+ + + L+GH +ALP W S Sbjct: 164 QSQMAFENKTANQL-------MHVLDWLPVRITSLGFLLVGHFSRALPIWLGHFLTPSIS 216 Query: 232 QYQVLTRLAQFSLAREPHV-DKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 ++L +++ + EP+ + E P V +AK+ ++ VIA LT+ G Sbjct: 217 AKKLLVDVSRAAEDIEPNERNCTEEPCTLVKLAKRNILFLMAVIAGLTLGG 267 >UniRef50_A0Y6F9 Predicted inner membrane protein n=3 Tax=Alteromonadales RepID=A0Y6F9_9GAMM Length = 283 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 135/300 (45%), Gaps = 35/300 (11%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 M L + +L LI ERL +WQ+ + + +R H L G+ AMG L Sbjct: 1 MILVSIILALILERLGARANYWQISYYANGYLKR-SHGLLASN-GLFSSAMGFLIWLFLP 58 Query: 61 L--QGVLFNVPTLLVWLL-----IGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + ++N+ ++W L + L+C G K R Y AYL A +R+D A + A ++ Sbjct: 59 VVAMACIYNLSEFVLWELAINIAVLLVCFGCAKQRALYKAYLNALTRDDGTAASLYALQM 118 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 ++++ L W+NFRFY A +FW +V G G V YA +R + Sbjct: 119 GQKR-----TEDQKGGETFGQTLAWVNFRFYCAVIFWFVVLGAPGAVL---YALVRTF-- 168 Query: 174 WLARYQTPHHRLQSG-----IDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDF 228 A +H++ I +L LDW+P R+A Y +IG+ K W DF Sbjct: 169 --ADLVRDNHKVIFAKHFKLIHKLLFWLDWLPARIASFGYLVIGNFNKGTSCWLHYALDF 226 Query: 229 HTSQYQVLTRLAQFSLAREPHVDK-----VETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 + +V+T A LA E V+K + + K+ +V+IALLT++G L Sbjct: 227 SSPNRKVVTYTA---LAAE-QVEKRYYGCTYEATCMIKLVKRNVLFYLVLIALLTLFGGL 282 >UniRef50_A1S2H8 Signaling modulator of AmpD, AmpE n=20 Tax=Shewanella RepID=A1S2H8_SHEAM Length = 286 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 136/300 (45%), Gaps = 36/300 (12%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV--KHFSLGRT-----LGMTIIAMGV 53 M LF+ L+ ++ ERL L E WQ D + RR+ F+ G+ L ++ + Sbjct: 1 MALFSLLMAILAERLKFLPETWQFDTLISKLHRRLWKDEFTQGQASEFQVLFALLLPAVL 60 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 +L L + G+ + + TL VW+L ++C + R + Y+ AA R D+ A EL Sbjct: 61 VYLALIVVSGIAWGMLTLAVWVLTAMVCFSHQEQRKAFKRYIQAACRGDTQACYRHGSEL 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + A + L+ Q+ + WIN+RFY A +LI GPV + Y +R ++ Sbjct: 121 DCSSCLEAVTADELGLKVGQS-VAWINYRFYGAVALYLI---ALGPVAAVLYCSVRYYEQ 176 Query: 174 WLARY--QTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS 231 R Q P+ +DA+L VLDW+P R+ + L G A W D T Sbjct: 177 MQKRSNLQLPY------VDALLTVLDWLPSRIFAFGFVLAGQFSSAFNRWRKLAFDPSTP 230 Query: 232 QYQVLTRLAQFSLAREPHVDKVETPKAA----------VSMAKKTSFVVVVVIALLTIYG 281 Q++T A + + P +A + ++K+ +++ ++LLTI+G Sbjct: 231 ARQIVTETAT-------EAESIPQPSSAPVCLQPTLVLLGLSKRNFILLLAAVSLLTIFG 283 >UniRef50_UPI0000E0F474 regulatory protein AmpE n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F474 Length = 274 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 22/215 (10%) Query: 73 VWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLREL 132 V L + + IG ++R Y YL AA++ D +L + P R Sbjct: 77 VTLFVLYMAIGCPELRNTYKCYLQAANQGDIDTCNIYTQQLGLGQLEP---------RTF 127 Query: 133 QNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAV 192 L+W+N++ Y AP+ +V G +G V Y LR + Q + QS + V Sbjct: 128 GQHLIWLNYQRYAAPMIMFVVFGLFGVV---AYGCLRTLHGY---SQANNIHAQSSLAKV 181 Query: 193 LHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHV-- 250 LHVLDW+P+R+ + L+GH ALP W L F TS + L LA+ ++A E Sbjct: 182 LHVLDWLPIRITAFGFLLVGHFSNALPKWVGFL--FDTSTHAKLV-LAEVAVAAEDVTSQ 238 Query: 251 --DKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 D P V +AK+ +V ++A+LT+ G + Sbjct: 239 DGDITTEPTTLVQLAKRNVLFIVAIVAVLTLSGVI 273 >UniRef50_A3WNI1 Membrane protein required for beta-lactamase induction n=1 Tax=Idiomarina baltica OS145 RepID=A3WNI1_9GAMM Length = 278 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 16/289 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFR----RVKHFSLGRTLGMTIIAMGVTFL 56 MTL L+ L ERL+ L W +D ++ + +V++F + + + L Sbjct: 1 MTLIALLIALSIERLYPLPAVWSIDFYMQRWMNWSQTKVRYFRGQSAWALLLQILLPAAL 60 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 + + + +++ LL + AG RL Y L A R DS A +L Sbjct: 61 AWLLFHWLDSGLVNFIGGIIVLLLVMNAGPERLAYKQLLKTAMRADSAGYQEAAEQLRHY 120 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 +P G ++ A++W+NF +LAP+F+ + T+G ++ Y LR+ Y Sbjct: 121 AHLPEGT-------PVERAVVWLNFVHFLAPIFFFV---TFGIAGVLAYGCLRS-VYRGT 169 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 Q ++ ++ L L+++P R A + AL+GH ALPA A + ++L Sbjct: 170 VQQDFDETARAQVERALWALNFIPARFAALGAALVGHFSHALPAVMAMATNTQDDNPELL 229 Query: 237 TRLAQFSLAREPHV-DKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 ++ + + R H D+ + +++ K+ VVIA+LT+ G +V Sbjct: 230 HQVVEKAEGRSHHPDDRSDAVTHQLNLMKRQHLFWFVVIAVLTLTGTIV 278 >UniRef50_Q47US3 Putative inner membrane protein AmpE n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47US3_COLP3 Length = 311 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 118/291 (40%), Gaps = 51/291 (17%) Query: 31 FFRRVKHFSLGRTLGMTIIAMGV--TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVR 88 FF + G T I + V T+LLL + +V LL +I ++C G R Sbjct: 33 FFSKNFTAKQGTTASAVFIILPVIATYLLLDVIDN---SVLQLLFSTVILIVCFGCTTTR 89 Query: 89 LHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPL 148 Y +YL +A R + +L +P AL+W+N+R+Y+A + Sbjct: 90 KSYKSYLHSAFRGEETTTEMHHEQLLSDKNLPE--------MGFGQALIWLNYRYYIAIM 141 Query: 149 FWLIVGGTWGPV--------------TLMGYAFLRAWQYWLARYQTP------HHR---- 184 + V G G V M A Q ++ HH+ Sbjct: 142 LFFTVFGAAGAVFYRLLTTVIEHKKAKCMASAAENKAQAEVSSVDESDIESEEHHQAVHE 201 Query: 185 ------LQSGIDA---VLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQV 235 + +G VL LDW+PVR+A Y +GH KA+P W SL D +QV Sbjct: 202 GNVAPNIMNGCQNHHDVLFWLDWLPVRIASFGYMFVGHFSKAMPVWLESLFDSQKPTHQV 261 Query: 236 LTRLAQFS---LAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 L +A+ S L E D P V +AK+ +V+ VI++LT+ G L Sbjct: 262 LIDVAEKSEDLLVNEN--DCTAEPCLLVRLAKRNVLLVLAVISILTLSGLL 310 >UniRef50_Q5R0P3 Membrane protein required for beta-lactamase induction n=1 Tax=Idiomarina loihiensis RepID=Q5R0P3_IDILO Length = 274 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 123/296 (41%), Gaps = 40/296 (13%) Query: 1 MTLFTTLLVLIFERLFKLGE--HWQLDHRLEAFFRRVKHFSLGRTLG------------M 46 M L L+ L ERL+ HW F R +H+S R + Sbjct: 1 MVLIALLIALSVERLYHSPAFLHWSF------FLERWQHWSAARLTNEKWKSEPLQLVRL 54 Query: 47 TIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHAR 106 + A+ V FL++ L ++ T +V +L LL + R Y AYL AA+R D Sbjct: 55 LVPALAVGFLVV-LLDNLMV---TFIVSILSLLLAMNCEPARKSYKAYLKAANRGDEQQV 110 Query: 107 ATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYA 166 LT G + ++L ++L+WIN+R Y+A +F+ ++ G++G + YA Sbjct: 111 NEHQHALTEFAG-------QHQPKQLSDSLIWINYRQYIAVMFYFVLFGSFGALV---YA 160 Query: 167 FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLG 226 LR A Q + DWVP RLAG ++GH +A P W Sbjct: 161 SLR-----YAEKQISEPESTKLWQQFMWFADWVPARLAGFGLLIVGHFSRAFPVWVKHSL 215 Query: 227 DFHTSQYQVLTRLAQFSLAREPHV-DKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 + ++L +A + H D+ E + + ++ V VIA LT+ G Sbjct: 216 NPQADPDKLLFNVASKAEDIPQHPDDRTEHIACQLRLMRRQQIFWVCVIAALTLTG 271 >UniRef50_Q7WVE4 Putative AmpE (Fragment) n=1 Tax=Xenorhabdus nematophila RepID=Q7WVE4_XENNE Length = 119 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 66/119 (55%) Query: 17 KLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLL 76 K+ +HWQL+ L F R+K SL +LGMT + +T+ L+ V F + +++ ++ Sbjct: 1 KMRDHWQLERYLVPAFARLKSHSLWGSLGMTFLVALLTWKLIDISSSVAFGILAIVLGII 60 Query: 77 IGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNA 135 I LLCIGAG++ Y YL A ++D + LTMI G + E LRE+QN+ Sbjct: 61 ISLLCIGAGRLWHDYRGYLQAVRQDDFGQQKKYLARLTMIQGTLPDTTKEERLREIQNS 119 >UniRef50_UPI0001AEC65C regulatory protein AmpE n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC65C Length = 300 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 21/225 (9%) Query: 70 TLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP-----AGCD 124 T + +I +CIG +R Y ++L AA R D A + +L AG + Sbjct: 85 TFIEQSIILFICIGCPALRAVYKSFLNAADRGDLQACSMYTDQLGHCASQSDSDGSAGTE 144 Query: 125 EREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHR 184 + + + L W+N++ Y A + W I G G + Y+ R+ L +H Sbjct: 145 GKTFGQHLT----WLNYQHYAAVMLWFIAFGAPGA---LFYSLSRSTTEALC---DANHP 194 Query: 185 LQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSL 244 L++ ++ LD++PVR+ ++GH +ALP W F Y VLT+++ + Sbjct: 195 LKAAAGRLMFALDYIPVRVTAFGMLMMGHFSRALPEWIKYALQFDVPAYDVLTQISSKAE 254 Query: 245 AREPHVDKVET------PKAAVSMAKKTSFVVVVVIALLTIYGAL 283 P +++ PK V +AK+ ++V+ + LT+ G+L Sbjct: 255 ILTPDEQQLQAENAAIEPKVLVKLAKRNVIFLLVITSALTLVGSL 299 >UniRef50_B4RWU8 Putative ampicillin resistance protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RWU8_ALTMD Length = 289 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 15/223 (6%) Query: 70 TLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL--TMIHGVPAGCDERE 127 T + ++ +CIG +R Y +L AA R D A + +L G E Sbjct: 74 TFIEQSIVLFICIGCPVLREIYKNFLNAAQRGDLQACSMYTDQLGHCASQSDSDGSASAE 133 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 + L W+N++ Y A + W I G G + Y+ R+ L +H L+ Sbjct: 134 G-KSFGQHLTWLNYQHYAAVMLWFIAFGAPGALF---YSISRSTTEALC---GANHPLKG 186 Query: 188 GIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 ++ LD++PVR+ ++GH +ALP W + F Y VLT ++ + Sbjct: 187 AAGRLMFALDYIPVRVTAFGMLMMGHFSRALPEWLSHALQFDVPAYDVLTHISAKAEVLT 246 Query: 248 PHVDKVETPKAA------VSMAKKTSFVVVVVIALLTIYGALV 284 P +++ AA V +AK+ ++V+ + LT+ G+L Sbjct: 247 PEEYQMQAENAAIEPRVLVKLAKRNVIFLLVITSALTLVGSLA 289 >UniRef50_Q12IR5 Signaling modulator of AmpD, AmpE n=1 Tax=Shewanella denitrificans OS217 RepID=Q12IR5_SHEDO Length = 327 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 40/282 (14%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV-KHFSLGRTLGMTIIAMGV----TF 55 M LF+ L+ ++ ERL L WQ D ++++ +R SL T G ++AM + Sbjct: 1 MALFSLLIAILVERLRLLPSQWQFDALMQSYHKRFWDRDSLASTSG-ALLAMALPAIILG 59 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 L+L L G+ F + LL W+ + ++C +R + Y+ AA R+D A A EL Sbjct: 60 LILYLLDGLFFGLFNLLAWIFVSVICFSHQNLRDTFKKYIQAACRSDVQASFRYASELDC 119 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW---- 171 + A +ER+ ++ WIN+R+Y A +LI GPV + Y +R + Sbjct: 120 CECLDA-VNERDLGAKVGQISAWINYRYYGAVALFLIF---LGPVGAVLYCTVRYYSQRE 175 Query: 172 ---QYWLARYQT--------------------PHHRLQSGIDAVLHVLDWVPVRLAGVVY 208 L QT P H + + +LDW+P R+ + Sbjct: 176 LSLNNQLQHCQTAKQALLEQGVVADNAELADEPSHIKMPLVQEIQKLLDWLPSRIFSFGF 235 Query: 209 ALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHV 250 L G + W +H+ ++T A LA E + Sbjct: 236 VLSGQFSSGMLIWRKLALQWHSGAKTLITETA---LASEASI 274 >UniRef50_B8GLX9 Signaling modulator of AmpD, AmpE n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GLX9_THISH Length = 296 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 36/239 (15%) Query: 63 GVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAG 122 G + + +++ ++I LLC+G + AY+ A + D + A +L VP Sbjct: 71 GAVLGLLDIVLGVIILLLCLGPKDLNDQVEAYVEAGAMKDEERQKRHARDLLGQQEVPED 130 Query: 123 CDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARY-QTP 181 ER L +Q N R + A LFW + G G A+ Y L ++P Sbjct: 131 LRER-TLSVVQAMFSEANSRLF-AVLFWFAILGPLG-----------AFIYRLGSLLKSP 177 Query: 182 HHRLQSGIDA----VLHVLDWVPVRLAGVVYALIGHGEKA-------LPAWFASLGDFHT 230 G+ A + ++DW+P RL + YAL+G + A LP +A++ + +T Sbjct: 178 GEERPEGVMAAAARLQALMDWIPARLFALGYALVGSFDTAFAVLTRFLPGSWANMAEENT 237 Query: 231 SQYQVLTRLAQFSL----AREPHVDKVETPKAAVSMAK----KTSFVVVVVIALLTIYG 281 S +L SL R H + A V A +T V + V+AL+T+ G Sbjct: 238 S---LLREAGSGSLHLDHVRGEHWEDPNEINALVERANHLIMRTLVVFLAVLALMTLAG 293 >UniRef50_C6BBL8 Cobalamin biosynthesis protein CobD n=61 Tax=Proteobacteria RepID=C6BBL8_RALP1 Length = 326 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 91/215 (42%), Gaps = 18/215 (8%) Query: 12 FERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA--LQGVLFNVP 69 F RL K E W R S R +G+ A+ V L+L A L GV +V Sbjct: 42 FGRLAKAIERW--------MNRAPAAVSWSRLVGVVAWAIAVLPLVLLAGWLVGVARDVS 93 Query: 70 TLLVWLLIGL-LCIGAGKVRLHYH-AYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 LV L + L G LH H A + A R+ RA + + DE Sbjct: 94 PWLVAALDAVALYFAIGARSLHEHIAPIALALRDADVPRARALASRIVSRDLTQATDEPI 153 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA-WQYWLARYQTPHHRLQ 186 +++AL + + APLFWL+V G G V L A W Y AR+ T Sbjct: 154 ARAAVESALENGSDAIF-APLFWLVVAGAPGVVLYRLANTLDAMWGYRNARF-TGFGWAA 211 Query: 187 SGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAW 221 + ID VL+W+P RL + YAL+GH AL W Sbjct: 212 ARID---DVLNWIPARLTAISYALLGHTADALNCW 243 >UniRef50_B3R5E5 Putative COBALAMIN BIOSYNTHESIS TRANSMEMBRANE PROTEIN, cobD/cbiB family n=3 Tax=cellular organisms RepID=B3R5E5_CUPTR Length = 334 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 18/232 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR 59 MT + LL LI E+ LG + + + A R +H F GR + + V L Sbjct: 1 MTFVSILLALIAEQFRALGRNNPIYEIVRALGDRAEHAFDTGRPRDAALAWLTVVLPLTL 60 Query: 60 ALQGVLF-----NVPTLLVW-LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 A+ V + +V L W +L+ + +G + ++ A +R+D H T+ E Sbjct: 61 AVIVVHYLLASISVALTLAWNVLVLYMTLGFRQFSHYFTDIHEALNRDDVHTARTLLHEW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 T + V E +R A + R FW +V PV G R +Y Sbjct: 121 TGLDTVEMPVSE--IVRHTLEAAIIAVHRHVFGVFFWFLV-----PVGPGGVVLYRTAEY 173 Query: 174 WLARYQTPHHRLQSGIDA----VLHVLDWVPVRLAGVVYALIGHGEKALPAW 221 + P + ++LDW+P RL + +A++G+ E A+ AW Sbjct: 174 LGRHWNLPSTERSPALGRFAARAFYLLDWIPSRLTSIGFAIVGNFEDAVYAW 225 >UniRef50_A0YEZ0 Membrane protein required for beta-lactamase induction n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YEZ0_9GAMM Length = 291 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 27/300 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF--SLGRTLGMTIIAMGVTFLLL 58 M ++V +L+ Q D+ +E R+ S LG I +T L++ Sbjct: 1 MEFLAIVIVYCLSQLWDSAGALQHDNWIERLSRKSTDMFTSSAMRLGFLIAVPSLTILIV 60 Query: 59 RAL-QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 AL +L + L+++++ L +G G + YL + ++ + + A ++ Sbjct: 61 LALVDSMLLGLLMLIIYVITLLFSLGRGDYGEDLYRYLNSWNQGNFESAYENALQIQGFQ 120 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGY--AFLRAWQYWL 175 D + ++ A L+ F + A +FW +V GPV +GY AFL Sbjct: 121 PTDTVTDSLSLHQAVKTAFLYYGFERWFAVIFWFLV---LGPVGAVGYRVAFLS------ 171 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALP-AWFASLGDFHTSQYQ 234 AR ++ V+H LDW+P RL + + L G+ +W D S+ Sbjct: 172 ARSDVLESDDRALAVRVIHYLDWLPSRLLVLSFTLTGNFVNGFSHSWGEIWSDQSASKLI 231 Query: 235 VLTRLAQFSLAREP-------HVDKV-----ETPKAAVSMAKKTSFVVVVVIALLTIYGA 282 +A A +P H +K+ E A S+ +++ ++VIA+LT+ G Sbjct: 232 NSCAMAALDGAEKPLNEGDRDHSEKIIHHGREQILALKSLMSRSAMCWLIVIAVLTLVGG 291 >UniRef50_Q2SKR8 Membrane protein required for beta-lactamase induction n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SKR8_HAHCH Length = 293 Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 24/240 (10%) Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTA--ASRNDSHARATMAGE 112 F++LR + V F TL V +++ LC+G G ++ YL R S R E Sbjct: 62 FIVLRLTEDVFFGFLTLFVHIVMLFLCLGCGFLKQSIDIYLQQWREGRFQSAFRTLEEAE 121 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + + + Y Q L+ F Y +FW + G G A L Sbjct: 122 IHIDDAQNMSPAQLHYAACSQ--YLYQTFVRYFMVIFWYMAIGPVG-------ALLARLA 172 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 + R P + + V L+W+P RL + +AL G+ A+ + D H Sbjct: 173 HVAGR--DPSVYVPQQMTTVYKALEWIPSRLLALSFALAGNFGGAIKHSANDMIDPHADA 230 Query: 233 YQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVV-----------VVVIALLTIYG 281 + VL + A ++ P E V++ K + ++IALLT+ G Sbjct: 231 FTVLRKAAGGAVEIYPLAAPSEREGQDVALEVKQMCAIRDLLNRAMIIWFILIALLTVAG 290 >UniRef50_C1DPK8 Inner membrane protein n=51 Tax=Proteobacteria RepID=C1DPK8_AZOVD Length = 280 Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 12/133 (9%) Query: 81 CIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWIN 140 +G G + + A R DS A A +A E + G LR +Q LLW Sbjct: 87 SLGRGDILTELKPFREAWRRGDSEA-ACLAAERDLAVGAEESLS---LLRRVQGYLLWQA 142 Query: 141 FRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVP 200 ++ + A +FW + GPV ++ Y L T L+ + H+LDW+P Sbjct: 143 YQSFFAVIFWYAL---LGPVAVLAYRLTA-----LTGEHTSLPALREHSVRLRHLLDWLP 194 Query: 201 VRLAGVVYALIGH 213 R + +AL+G+ Sbjct: 195 ARGLALSFALVGN 207 >UniRef50_A9KED3 Beta-lactamase induction protein n=6 Tax=Coxiella burnetii RepID=A9KED3_COXBN Length = 258 Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%) Query: 146 APLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHR----LQSGIDAVLHVLDWVPV 201 A +FWL++ G+ G V Y + + +L + ++ L S + V VLDW+P+ Sbjct: 117 ALIFWLLILGSTGVVL---YTLVITLRQFLEKSPAQNNEEGTGLLSAVAIVQGVLDWLPL 173 Query: 202 RLAGVVYALIGHGEKALPAWFASL--GDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAA 259 RL G+ +AL+GH W + G T L + +E + +E K+ Sbjct: 174 RLIGITFALVGHFSPTFALWRLKVLTGIDKTPDLAAACGLTALDMNKETKLLSLEELKSL 233 Query: 260 VSMAKKTSFVVVVVIALLTI 279 + + +V +VVIAL TI Sbjct: 234 DGLISRALWVWLVVIALFTI 253 >UniRef50_A4BKE4 Membrane protein required for beta-lactamase induction n=1 Tax=Reinekea blandensis MED297 RepID=A4BKE4_9GAMM Length = 267 Score = 41.2 bits (95), Expect = 0.041, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 WL + V L W+PVRL AL+GH W + DF Sbjct: 162 WLVTTAVQGEEADAFCHQVKQALYWIPVRLMTFTLALMGHFAHGFQVWLDQVKDFERDDR 221 Query: 234 QVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 +L + +L +++E +S+ K+T +V IAL+ I+G Sbjct: 222 MLLVSCLKSALGPVNEDNQLEE---TLSLLKRTQLAWLVGIALMFIFG 266 >UniRef50_Q5ZVD4 Inner membrane protein AmpE n=6 Tax=Legionella RepID=Q5ZVD4_LEGPH Length = 259 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 44/228 (19%) Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 +TFL+ +LQ +LF + L++ L I C+G +A+ + + GE Sbjct: 71 LTFLVYFSLQSILFGLFGLILSLFIFYYCLGPQ------NAFYPILKKQANQTETDAIGE 124 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 Y E+ + L A +FW I+ G +T Sbjct: 125 ---------------YFAEVNSQLF--------AVVFWYIIAGPIAALT----------- 150 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 Y L + + + + + ++L+W+P R+ +++ L+G+ ++ + + + S Sbjct: 151 YRLITLCKEINFISTQANQITNILEWIPARITALLFLLVGNFQRGFHLFAQYVLTYPDSN 210 Query: 233 YQVLTRLAQFSLAREPHVDKVETPKAAV-SMAKKTSFVVVVVIALLTI 279 ++L R R D E P AA ++ + + V++V IAL T+ Sbjct: 211 DKIL-RGCGLQAVRIN--DTEEVPMAAAENLVEHATIVLLVFIALFTL 255 >UniRef50_C3XB65 Cobalamin biosynthesis protein CobD n=2 Tax=Oxalobacter formigenes RepID=C3XB65_OXAFO Length = 316 Score = 40.0 bits (92), Expect = 0.083, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 72 LVW-LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARA-TMAGELTMIHGVPAGCDEREYL 129 L+W +LI LC+G HY + + A N +A + GE + D + Sbjct: 78 LLWSILILYLCMGFRNYN-HYFSAIQMALLNGEQMQARNLLGEWCDCDA--SAMDTADIT 134 Query: 130 R-ELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSG 188 R ++ AL+ + + +FW ++ +GP + Y F Y + P G Sbjct: 135 RMAIEKALISVQ-KDVFGIIFWFVL--PFGPAGAILYRFS---SYLQKSWNEPDDSDSFG 188 Query: 189 IDA--VLHVLDWVPVRLAGVVYALIGHGEKALPAW 221 + A + + +DWVPVRL + +A++G+ E A+ AW Sbjct: 189 LFAKKIFYWIDWVPVRLTALSFAIVGNFEDAIYAW 223 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AE14 Protein ampE n=163 Tax=Enterobacteriaceae RepID=... 296 7e-79 UniRef50_Q15QI4 Signaling modulator of AmpD, AmpE n=1 Tax=Pseudo... 240 4e-62 UniRef50_A1S2H8 Signaling modulator of AmpD, AmpE n=20 Tax=Shewa... 227 3e-58 UniRef50_A3WNI1 Membrane protein required for beta-lactamase ind... 223 7e-57 UniRef50_UPI0001AEC65C regulatory protein AmpE n=1 Tax=Alteromon... 219 7e-56 UniRef50_A0Y6F9 Predicted inner membrane protein n=3 Tax=Alterom... 218 2e-55 UniRef50_B4RWU8 Putative ampicillin resistance protein n=1 Tax=A... 217 3e-55 UniRef50_Q5R0P3 Membrane protein required for beta-lactamase ind... 214 2e-54 UniRef50_Q47US3 Putative inner membrane protein AmpE n=1 Tax=Col... 211 2e-53 UniRef50_UPI0000E0F474 regulatory protein AmpE n=1 Tax=Glaciecol... 209 9e-53 UniRef50_A6FBG6 AmpE protein n=1 Tax=Moritella sp. PE36 RepID=A6... 208 1e-52 UniRef50_Q12IR5 Signaling modulator of AmpD, AmpE n=1 Tax=Shewan... 197 4e-49 UniRef50_A0YEZ0 Membrane protein required for beta-lactamase ind... 196 9e-49 UniRef50_B3R5E5 Putative COBALAMIN BIOSYNTHESIS TRANSMEMBRANE PR... 165 1e-39 UniRef50_B8GLX9 Signaling modulator of AmpD, AmpE n=1 Tax=Thioal... 155 1e-36 UniRef50_C6BBL8 Cobalamin biosynthesis protein CobD n=61 Tax=Pro... 122 1e-26 UniRef50_Q7WVE4 Putative AmpE (Fragment) n=1 Tax=Xenorhabdus nem... 102 1e-20 Sequences not found previously or not previously below threshold: UniRef50_Q2SXZ6 CobD/CbiB family protein, putative n=62 Tax=Burk... 129 1e-28 UniRef50_B9Z6F4 Cobalamin biosynthesis protein CbiB n=2 Tax=Chro... 107 4e-22 UniRef50_A4SW78 Cobalamin biosynthesis protein CbiB n=2 Tax=Poly... 105 2e-21 UniRef50_C3XB65 Cobalamin biosynthesis protein CobD n=2 Tax=Oxal... 104 5e-21 UniRef50_A6SVI9 Cobalamin biosynthesis protein CobD n=2 Tax=Oxal... 103 6e-21 UniRef50_C1DBX6 Probable cobalamin biosynthesis transmembrane pr... 102 1e-20 UniRef50_A1WB47 Cobalamin biosynthesis protein CbiB n=2 Tax=Coma... 102 2e-20 UniRef50_Q2SKR8 Membrane protein required for beta-lactamase ind... 101 3e-20 UniRef50_A4BKE4 Membrane protein required for beta-lactamase ind... 100 7e-20 UniRef50_A1K7I5 Cobalamin biosynthesis transmembrane protein n=5... 100 8e-20 UniRef50_C7RA12 Signaling modulator of AmpD, AmpE n=1 Tax=Kangie... 99 2e-19 UniRef50_A4BU75 Putative uncharacterized protein n=1 Tax=Nitroco... 97 5e-19 UniRef50_Q3SJZ9 Putative cobalamin biosynthesis transmembrane pr... 97 6e-19 UniRef50_C7I5F9 Adenosylcobinamide-phosphate synthase n=1 Tax=Th... 93 8e-18 UniRef50_C6P7J7 Cobalamin biosynthesis protein CbiB n=1 Tax=Side... 91 4e-17 UniRef50_C5V172 Cobalamin biosynthesis protein CbiB n=1 Tax=Gall... 91 5e-17 UniRef50_B7RSR6 Putative uncharacterized protein n=1 Tax=marine ... 91 6e-17 UniRef50_A6F578 Membrane protein required for beta-lactamase ind... 89 2e-16 UniRef50_A1WEQ3 Cobalamin biosynthesis protein CbiB n=14 Tax=Bur... 88 4e-16 UniRef50_Q1YSB1 Inner membrane protein AmpE n=1 Tax=gamma proteo... 86 1e-15 UniRef50_Q2S8B8 Cobalamin biosynthesis protein CobD n=4 Tax=Gamm... 84 4e-15 UniRef50_C1DPK8 Inner membrane protein n=51 Tax=Proteobacteria R... 84 8e-15 UniRef50_Q1MZQ5 Membrane protein required for beta-lactamase ind... 83 1e-14 UniRef50_B7VKP2 Cobalamin biosynthesis protein CobD/CbiB n=2 Tax... 83 1e-14 UniRef50_Q21ME0 Signaling modulator of AmpD, AmpE n=2 Tax=Altero... 82 2e-14 UniRef50_B8KJ07 Putative uncharacterized protein n=1 Tax=gamma p... 81 4e-14 UniRef50_Q5ZVD4 Inner membrane protein AmpE n=6 Tax=Legionella R... 81 5e-14 UniRef50_A1TZ82 Signaling modulator of AmpD, AmpE n=2 Tax=Marino... 81 5e-14 UniRef50_A4VJ38 Cobalamin biosynthesis protein cobD n=67 Tax=Pro... 79 2e-13 UniRef50_A8FV25 CobD; cobalamin biosynthetic protein n=2 Tax=She... 78 3e-13 UniRef50_UPI0001698E73 adenosylcobinamide-phosphate synthase n=1... 77 6e-13 UniRef50_A9KED3 Beta-lactamase induction protein n=6 Tax=Coxiell... 74 7e-12 UniRef50_A4A5I5 Transmembrane protein n=1 Tax=Congregibacter lit... 74 7e-12 UniRef50_C6XB70 Cobalamin biosynthesis protein CbiB n=1 Tax=Meth... 73 1e-11 UniRef50_D0L1E9 Signaling modulator of AmpD, AmpE n=1 Tax=Haloth... 72 3e-11 UniRef50_A1WY59 Adenosylcobinamide-phosphate synthase n=2 Tax=Pr... 71 3e-11 UniRef50_B3PLN3 Putative AmpE n=1 Tax=Cellvibrio japonicus Ueda1... 71 4e-11 UniRef50_A6W1J9 Cobalamin biosynthesis protein CobD n=2 Tax=Mari... 70 9e-11 UniRef50_B3PIN7 Cobalamin biosynthesis protein CobD n=1 Tax=Cell... 68 4e-10 UniRef50_A8PLW8 Transmembrane protein n=1 Tax=Rickettsiella gryl... 68 4e-10 UniRef50_A1TXA8 Adenosylcobinamide-phosphate synthase n=2 Tax=Ma... 66 1e-09 UniRef50_Q1GYJ0 Adenosylcobinamide-phosphate synthase n=1 Tax=Me... 66 2e-09 UniRef50_A0Z7A0 AmpE protein n=2 Tax=unclassified Gammaproteobac... 59 2e-07 UniRef50_C3MJX6 Cobalamin biosynthesis protein CobD n=12 Tax=Sul... 56 2e-06 UniRef50_Q3ZX56 Cobalamin biosynthesis protein cobD n=5 Tax=Deha... 55 3e-06 UniRef50_Q12UB2 Adenosylcobinamide-phosphate synthase n=4 Tax=Me... 54 5e-06 UniRef50_B0K304 Cobalamin biosynthesis protein CobD n=7 Tax=Ther... 52 2e-05 UniRef50_Q6ALU7 Cobalamin biosynthesis protein cobD n=1 Tax=Desu... 52 2e-05 UniRef50_Q87D61 Transmembrane protein n=21 Tax=Bacteria RepID=Q8... 52 2e-05 UniRef50_A8MIW5 Cobalamin biosynthesis protein CobD n=3 Tax=Clos... 52 3e-05 UniRef50_Q97CS1 Probable cobalamin biosynthesis protein cobD n=2... 52 3e-05 UniRef50_A6UUW7 Probable cobalamin biosynthesis protein cobD n=9... 52 3e-05 UniRef50_A6GTD6 Adenosylcobinamide-phosphate synthase n=1 Tax=Li... 52 3e-05 UniRef50_Q1GDE9 Cobalamin biosynthesis protein cobD n=19 Tax=Rho... 51 6e-05 UniRef50_B2A0G4 Cobalamin biosynthesis protein CobD n=1 Tax=Natr... 51 6e-05 UniRef50_A0LJ23 Adenosylcobinamide-phosphate synthase n=1 Tax=Sy... 51 7e-05 UniRef50_A9KMP3 Cobalamin biosynthesis protein CobD n=1 Tax=Clos... 49 2e-04 UniRef50_B5JDR8 Cobalamin biosynthesis protein CobD n=1 Tax=Verr... 49 2e-04 UniRef50_O27460 Probable cobalamin biosynthesis protein cobD n=1... 49 3e-04 UniRef50_B2UXD7 Cobalamin biosynthesis protein CobD n=4 Tax=Clos... 48 3e-04 UniRef50_A6X053 Cobalamin biosynthesis protein cobD n=46 Tax=Rhi... 48 3e-04 UniRef50_A5VM86 Adenosylcobinamide-phosphate synthase n=8 Tax=La... 48 3e-04 UniRef50_C4RPJ0 Cobalamin biosynthesis protein cobD (Fragment) n... 48 3e-04 UniRef50_Q5JI24 Probable cobalamin biosynthesis protein cobD n=9... 48 4e-04 UniRef50_C9RHK7 Cobalamin biosynthesis protein CobD n=3 Tax=Meth... 48 5e-04 UniRef50_Q15YJ2 Adenosylcobinamide-phosphate synthase n=1 Tax=Ps... 47 6e-04 UniRef50_Q73JM8 Cobalamin biosynthesis protein CobD n=1 Tax=Trep... 47 6e-04 UniRef50_C4V0Y6 Cobalamin biosynthesis protein CbiB n=2 Tax=Sele... 47 0.001 UniRef50_Q15WT1 Adenosylcobinamide-phosphate synthase n=1 Tax=Ps... 46 0.001 UniRef50_B7ATE5 Putative uncharacterized protein n=1 Tax=Bactero... 46 0.001 UniRef50_C1TM10 Cobalamin biosynthesis protein CobD n=1 Tax=Deth... 46 0.001 UniRef50_B1HXM0 Cobalamin biosynthesis protein n=2 Tax=Bacillace... 46 0.001 UniRef50_C9KJ54 Cobalamin biosynthesis protein CobD n=1 Tax=Mits... 46 0.001 UniRef50_Q3A7A1 Adenosylcobinamide-phosphate synthase n=2 Tax=De... 46 0.001 UniRef50_Q3ILJ8 Putative cobalamin biosynthesis protein n=2 Tax=... 46 0.001 UniRef50_A1AMC9 Cobalamin biosynthesis protein cobD n=13 Tax=Bac... 46 0.002 UniRef50_Q52683 Cobalamin biosynthesis protein cobD n=6 Tax=Alph... 46 0.002 UniRef50_O28933 Probable cobalamin biosynthesis protein cobD n=1... 46 0.002 UniRef50_B2RK82 Cobalamin biosynthesis protein n=29 Tax=Bacteria... 45 0.002 UniRef50_A7HMT4 Cobalamin biosynthesis protein CobD n=4 Tax=Ther... 45 0.002 UniRef50_A4J805 Adenosylcobinamide-phosphate synthase n=2 Tax=Cl... 45 0.002 UniRef50_B8FH76 Cobalamin biosynthesis protein CobD n=1 Tax=Desu... 45 0.002 UniRef50_A7C0E6 Cobalamin biosynthesis protein CbiB n=1 Tax=Begg... 45 0.002 UniRef50_C1SKG0 Cobalamin biosynthesis protein CobD n=1 Tax=Deni... 45 0.002 UniRef50_B6BH68 Cobalamin biosynthesis protein CobD n=1 Tax=Camp... 45 0.002 UniRef50_C7N893 Cobalamin biosynthesis protein CobD n=4 Tax=Bact... 45 0.003 UniRef50_UPI0001AEBF52 adenosylcobinamide-phosphate synthase n=1... 45 0.003 UniRef50_A9GM39 Cobalamin biosynthesis protein cobD n=2 Tax=Bact... 45 0.003 UniRef50_Q3ZWV9 Cobalamin biosynthesis protein n=3 Tax=Dehalococ... 45 0.003 UniRef50_Q1Q2T8 Similar to cobalamin biosynthesis protein cbiB n... 45 0.003 UniRef50_A6TU69 Cobalamin biosynthesis protein CobD n=1 Tax=Alka... 45 0.003 UniRef50_Q97LH9 Cobalamin biosynthesis protein cobD n=21 Tax=Bac... 45 0.004 UniRef50_C0Z7H8 Cobalamin biosynthesis protein n=1 Tax=Brevibaci... 45 0.004 UniRef50_Q180T1 Cobalamin biosynthesis protein n=9 Tax=Clostridi... 44 0.004 UniRef50_C9S015 Cobalamin biosynthesis protein CobD n=5 Tax=Baci... 44 0.004 UniRef50_C6BSX1 Cobalamin biosynthesis protein CobD n=2 Tax=Desu... 44 0.005 UniRef50_Q3AE10 Cobalamin biosynthesis protein CobD n=1 Tax=Carb... 44 0.006 UniRef50_C0GDW1 Cobalamin biosynthesis protein CobD n=1 Tax=Deth... 44 0.006 UniRef50_A9A601 Cobalamin biosynthesis protein CobD n=4 Tax=Thau... 44 0.008 UniRef50_A1UIE7 Adenosylcobinamide-phosphate synthase n=31 Tax=A... 44 0.008 UniRef50_A4CCJ7 Putative cobalamin biosynthesis protein n=1 Tax=... 44 0.008 UniRef50_D2MJU6 Cobalamin (Vitamin B12) biosynthesis CbiB n=1 Ta... 43 0.009 UniRef50_Q3ZY68 Cobalamin biosynthesis protein n=5 Tax=Dehalococ... 43 0.010 UniRef50_P74475 Cobalamin biosynthesis protein cobD n=9 Tax=Cyan... 43 0.010 UniRef50_C7NCQ6 Cobalamin biosynthesis protein CobD n=9 Tax=Fuso... 43 0.011 UniRef50_B9KKH9 Adenosylcobinamide-phosphate synthase n=3 Tax=Rh... 43 0.012 UniRef50_Q0C212 Cobalamin biosynthesis protein CobD n=8 Tax=Rhod... 43 0.013 UniRef50_C6PE10 Cobalamin biosynthesis protein CobD n=3 Tax=Ther... 43 0.013 UniRef50_Q720N7 Cobalamin biosynthesis protein cobD n=17 Tax=Lis... 43 0.014 UniRef50_A3DK66 Adenosylcobinamide-phosphate synthase n=3 Tax=Cl... 43 0.014 UniRef50_A1TME6 Adenosylcobinamide-phosphate synthase n=8 Tax=ce... 43 0.015 UniRef50_Q939K6 CbiB n=6 Tax=Actinomycetales RepID=Q939K6_PROFR 42 0.015 UniRef50_C4ZB09 Cobalamin biosynthesis protein CobD n=3 Tax=Clos... 42 0.019 UniRef50_D1BMI1 Cobalamin biosynthesis protein CobD n=4 Tax=Veil... 42 0.024 UniRef50_A8MCQ2 Cobalamin biosynthesis protein CbiB n=1 Tax=Cald... 42 0.026 UniRef50_C6L9T1 Cobalamin biosynthesis protein CobD n=5 Tax=Clos... 42 0.027 UniRef50_B0TIK7 Cobalamin biosynthesis protein cbib/cobd n=4 Tax... 42 0.028 UniRef50_D0I861 Adenosylcobinamide-phosphate synthase n=1 Tax=Gr... 42 0.029 UniRef50_A3CL57 Cobalamin biosynthesis protein cobD n=1 Tax=Stre... 42 0.030 UniRef50_B2IE17 Cobalamin biosynthesis protein CobD n=16 Tax=Alp... 41 0.035 UniRef50_Q729W0 Cobalamin biosynthesis protein CobD, putative n=... 41 0.036 UniRef50_Q1Z1A5 Adenosylcobinamide-phosphate synthase n=4 Tax=Vi... 41 0.036 UniRef50_Q8KDV4 Cobalamin biosynthesis protein cobD n=11 Tax=Chl... 41 0.041 UniRef50_Q897L3 Cobalamin biosynthesis protein cobD n=13 Tax=Clo... 41 0.041 UniRef50_A9MLR0 Cobalamin biosynthesis protein cbiB n=55 Tax=Ent... 41 0.043 UniRef50_C5D3K3 Cobalamin biosynthesis protein CobD n=3 Tax=Baci... 41 0.043 UniRef50_B8I0R7 Cobalamin biosynthesis protein CobD n=4 Tax=Clos... 41 0.045 UniRef50_C9MYC2 Cobalamin biosynthesis protein CobD n=3 Tax=Fuso... 40 0.059 UniRef50_UPI0001C336B8 adenosylcobinamide-phosphate synthase n=1... 40 0.061 UniRef50_C7PI39 Cobalamin biosynthesis protein CobD n=6 Tax=Bact... 40 0.061 UniRef50_A3QBP9 Cobalamin biosynthesis protein CbiB n=3 Tax=Shew... 40 0.066 UniRef50_Q9KCI3 Cobalamin biosynthesis protein cobD n=4 Tax=Baci... 40 0.067 UniRef50_B5YL82 Cobalamin biosynthesis protein CobD n=1 Tax=Ther... 40 0.070 UniRef50_Q0W1P4 Adenosylcobinamide-phosphate synthase n=2 Tax=Eu... 40 0.073 UniRef50_C0GMN8 Cobalamin biosynthesis protein CobD n=1 Tax=Desu... 40 0.078 UniRef50_B6IPQ1 Cobalamin biosynthesis protein CobD n=1 Tax=Rhod... 40 0.081 UniRef50_A8ZY32 Cobalamin biosynthesis protein CobD n=2 Tax=Desu... 40 0.094 UniRef50_Q75FR2 Cobalamin biosynthesis protein cobD n=4 Tax=Lept... 40 0.095 >UniRef50_P0AE14 Protein ampE n=163 Tax=Enterobacteriaceae RepID=AMPE_ECOLI Length = 284 Score = 296 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA Sbjct: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 Query: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP Sbjct: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 Query: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT Sbjct: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 Query: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA 240 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA Sbjct: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA 240 Query: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV Sbjct: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 >UniRef50_Q15QI4 Signaling modulator of AmpD, AmpE n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15QI4_PSEA6 Length = 270 Score = 240 bits (612), Expect = 4e-62, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 24/288 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHR---LEAFFRRVKHFSLGRTLGMTIIAMGVTFLL 57 MTL + LLVL ER+ +WQ D A +++ S +L ++A+ + ++ Sbjct: 1 MTLISLLLVLFVERVTTKSRYWQADFYSTKYLAAWQKRDGLSSDTSLLFLLVAIVIPPVI 60 Query: 58 LRALQGVLFN-VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 + + ++ I ++C+G VR Y YL AA+R D A + ++ Sbjct: 61 IFCFLSFAVGQIIAFIISTTILMVCMGCPSVRATYKCYLQAANRGDMEACSLYEDQI--- 117 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 CD + L+W N+R Y A + + ++ G G V Y RA Q +A Sbjct: 118 ------CDREQISATFGQNLVWQNYRHYAAVILFFVLLGAPGAVF---YVLARAVQSQMA 168 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 ++ ++HVLDW+PVR+ + + L+GH +ALP W S ++L Sbjct: 169 FENKTANQ-------LMHVLDWLPVRITSLGFLLVGHFSRALPIWLGHFLTPSISAKKLL 221 Query: 237 TRLAQFSLAREPHV-DKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 +++ + EP+ + E P V +AK+ ++ VIA LT+ G L Sbjct: 222 VDVSRAAEDIEPNERNCTEEPCTLVKLAKRNILFLMAVIAGLTLGGWL 269 >UniRef50_A1S2H8 Signaling modulator of AmpD, AmpE n=20 Tax=Shewanella RepID=A1S2H8_SHEAM Length = 286 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 18/293 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV--KHFSLGRT-----LGMTIIAMGV 53 M LF+ L+ ++ ERL L E WQ D + RR+ F+ G+ L ++ + Sbjct: 1 MALFSLLMAILAERLKFLPETWQFDTLISKLHRRLWKDEFTQGQASEFQVLFALLLPAVL 60 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 +L L + G+ + + TL VW+L ++C + R + Y+ AA R D+ A EL Sbjct: 61 VYLALIVVSGIAWGMLTLAVWVLTAMVCFSHQEQRKAFKRYIQAACRGDTQACYRHGSEL 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + A + L+ + ++ WIN+RFY A +LI GPV + Y +R ++ Sbjct: 121 DCSSCLEAVTADELGLK-VGQSVAWINYRFYGAVALYLI---ALGPVAAVLYCSVRYYEQ 176 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 R +DA+L VLDW+P R+ + L G A W D T Sbjct: 177 MQKRSNLQ----LPYVDALLTVLDWLPSRIFAFGFVLAGQFSSAFNRWRKLAFDPSTPAR 232 Query: 234 QVLTRLAQFSLAREP---HVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 Q++T A + + ++ + ++K+ +++ ++LLTI+G + Sbjct: 233 QIVTETATEAESIPQPSSAPVCLQPTLVLLGLSKRNFILLLAAVSLLTIFGII 285 >UniRef50_A3WNI1 Membrane protein required for beta-lactamase induction n=1 Tax=Idiomarina baltica OS145 RepID=A3WNI1_9GAMM Length = 278 Score = 223 bits (567), Expect = 7e-57, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 16/289 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFR----RVKHFSLGRTLGMTIIAMGVTFL 56 MTL L+ L ERL+ L W +D ++ + +V++F + + + L Sbjct: 1 MTLIALLIALSIERLYPLPAVWSIDFYMQRWMNWSQTKVRYFRGQSAWALLLQILLPAAL 60 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 + + + +++ LL + AG RL Y L A R DS A +L Sbjct: 61 AWLLFHWLDSGLVNFIGGIIVLLLVMNAGPERLAYKQLLKTAMRADSAGYQEAAEQLRHY 120 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 +P G ++ A++W+NF +LAP+F+ + T+G ++ Y LR+ Y Sbjct: 121 AHLPEGT-------PVERAVVWLNFVHFLAPIFFFV---TFGIAGVLAYGCLRS-VYRGT 169 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 Q ++ ++ L L+++P R A + AL+GH ALPA A + ++L Sbjct: 170 VQQDFDETARAQVERALWALNFIPARFAALGAALVGHFSHALPAVMAMATNTQDDNPELL 229 Query: 237 TRLAQFSLAREPHV-DKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 ++ + + R H D+ + +++ K+ VVIA+LT+ G +V Sbjct: 230 HQVVEKAEGRSHHPDDRSDAVTHQLNLMKRQHLFWFVVIAVLTLTGTIV 278 >UniRef50_UPI0001AEC65C regulatory protein AmpE n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC65C Length = 300 Score = 219 bits (558), Expect = 7e-56, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 114/294 (38%), Gaps = 28/294 (9%) Query: 13 ERLFKLGEHWQLDHRLEAF---------------FRRVKHFSLGRTLGMTIIAMGVTFLL 57 ERL +W ++ + + + + + +L Sbjct: 13 ERLITKTPNWHIEKYAAQYRAFLQDKGLIKFQEGNEDEEGSKKVSSTALYFYLLLPAVVL 72 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 VL T + +I +CIG +R Y ++L AA R D A + +L Sbjct: 73 GAIEYWVLGAFLTFIEQSIILFICIGCPALRAVYKSFLNAADRGDLQACSMYTDQLGHCA 132 Query: 118 GV-PAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 + + L W+N++ Y A + W I G G + Y+ R+ L Sbjct: 133 SQSDSDGSAGTEGKTFGQHLTWLNYQHYAAVMLWFIAFGAPGALF---YSLSRSTTEALC 189 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 +H L++ ++ LD++PVR+ ++GH +ALP W F Y VL Sbjct: 190 ---DANHPLKAAAGRLMFALDYIPVRVTAFGMLMMGHFSRALPEWIKYALQFDVPAYDVL 246 Query: 237 TRLAQFSLAREPHVDKVE------TPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 T+++ + P +++ PK V +AK+ ++V+ + LT+ G+L Sbjct: 247 TQISSKAEILTPDEQQLQAENAAIEPKVLVKLAKRNVIFLLVITSALTLVGSLA 300 >UniRef50_A0Y6F9 Predicted inner membrane protein n=3 Tax=Alteromonadales RepID=A0Y6F9_9GAMM Length = 283 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 78/292 (26%), Positives = 128/292 (43%), Gaps = 19/292 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 M L + +L LI ERL +WQ+ + + +R G+ AMG L Sbjct: 1 MILVSIILALILERLGARANYWQISYYANGYLKRSHGLLASN--GLFSSAMGFLIWLFLP 58 Query: 61 LQGVL--FNVPTLLVWLL-----IGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + + +N+ ++W L + L+C G K R Y AYL A +R+D A + A ++ Sbjct: 59 VVAMACIYNLSEFVLWELAINIAVLLVCFGCAKQRALYKAYLNALTRDDGTAASLYALQM 118 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 ++++ L W+NFRFY A +FW +V G G V YA +R + Sbjct: 119 GQKR-----TEDQKGGETFGQTLAWVNFRFYCAVIFWFVVLGAPGAV---LYALVRTFAD 170 Query: 174 WLAR-YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 + ++ + I +L LDW+P R+A Y +IG+ K W DF + Sbjct: 171 LVRDNHKVIFAKHFKLIHKLLFWLDWLPARIASFGYLVIGNFNKGTSCWLHYALDFSSPN 230 Query: 233 YQVLTRLAQFSLAREPHVD-KVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 +V+T A + E + + K+ +V+IALLT++G L Sbjct: 231 RKVVTYTALAAEQVEKRYYGCTYEATCMIKLVKRNVLFYLVLIALLTLFGGL 282 >UniRef50_B4RWU8 Putative ampicillin resistance protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RWU8_ALTMD Length = 289 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 17/283 (6%) Query: 13 ERLFKLGEHWQLDHRLEAFFRRVKHFSL----GRTLGMTIIAMGVTFLLLRALQGVLFNV 68 ERL W ++ + ++ + + + LL +L Sbjct: 13 ERLISKTPSWHIEKYASQYRDFLQKKGWLGEKASSAALYFYLLVPALLLGAIEYWLLGAF 72 Query: 69 PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREY 128 T + ++ +CIG +R Y +L AA R D A + +L Sbjct: 73 LTFIEQSIVLFICIGCPVLREIYKNFLNAAQRGDLQACSMYTDQLGHCASQSDSDGSASA 132 Query: 129 -LRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 + L W+N++ Y A + W I G G + Y+ R+ L +H L+ Sbjct: 133 EGKSFGQHLTWLNYQHYAAVMLWFIAFGAPGALF---YSISRSTTEALC---GANHPLKG 186 Query: 188 GIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 ++ LD++PVR+ ++GH +ALP W + F Y VLT ++ + Sbjct: 187 AAGRLMFALDYIPVRVTAFGMLMMGHFSRALPEWLSHALQFDVPAYDVLTHISAKAEVLT 246 Query: 248 PHVDKVE------TPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 P +++ P+ V +AK+ ++V+ + LT+ G+L Sbjct: 247 PEEYQMQAENAAIEPRVLVKLAKRNVIFLLVITSALTLVGSLA 289 >UniRef50_Q5R0P3 Membrane protein required for beta-lactamase induction n=1 Tax=Idiomarina loihiensis RepID=Q5R0P3_IDILO Length = 274 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 78/296 (26%), Positives = 123/296 (41%), Gaps = 40/296 (13%) Query: 1 MTLFTTLLVLIFERLFKLGE--HWQLDHRLEAFFRRVKHFSLGRTLG------------M 46 M L L+ L ERL+ HW F R +H+S R + Sbjct: 1 MVLIALLIALSVERLYHSPAFLHWSF------FLERWQHWSAARLTNEKWKSEPLQLVRL 54 Query: 47 TIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHAR 106 + A+ V FL++ L + + T +V +L LL + R Y AYL AA+R D Sbjct: 55 LVPALAVGFLVVL-LDNL---MVTFIVSILSLLLAMNCEPARKSYKAYLKAANRGDEQQV 110 Query: 107 ATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYA 166 LT G + ++L ++L+WIN+R Y+A +F+ ++ G++G + YA Sbjct: 111 NEHQHALTEFAG-------QHQPKQLSDSLIWINYRQYIAVMFYFVLFGSFGALV---YA 160 Query: 167 FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLG 226 LR A Q + DWVP RLAG ++GH +A P W Sbjct: 161 SLRY-----AEKQISEPESTKLWQQFMWFADWVPARLAGFGLLIVGHFSRAFPVWVKHSL 215 Query: 227 DFHTSQYQVLTRLAQFSLAREPHV-DKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 + ++L +A + H D+ E + + ++ V VIA LT+ G Sbjct: 216 NPQADPDKLLFNVASKAEDIPQHPDDRTEHIACQLRLMRRQQIFWVCVIAALTLTG 271 >UniRef50_Q47US3 Putative inner membrane protein AmpE n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47US3_COLP3 Length = 311 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 117/305 (38%), Gaps = 50/305 (16%) Query: 18 LGEHWQLDHRLEAF---FRRVKHFSLGRTLGMTIIAMGV--TFLLLRALQGVLFNVPTLL 72 + WQ + + + F + G T I + V T+LLL + +V LL Sbjct: 17 SAKVWQFNFYYQHYHHFFSKNFTAKQGTTASAVFIILPVIATYLLLDVIDN---SVLQLL 73 Query: 73 VWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLREL 132 +I ++C G R Y +YL +A R + +L +P Sbjct: 74 FSTVILIVCFGCTTTRKSYKSYLHSAFRGEETTTEMHHEQLLSDKNLPE--------MGF 125 Query: 133 QNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGI--- 189 AL+W+N+R+Y+A + + V G G V + + ++ Q+ + Sbjct: 126 GQALIWLNYRYYIAIMLFFTVFGAAGAVFYRLLTTVIEHKKAKCMASAAENKAQAEVSSV 185 Query: 190 ------------------------------DAVLHVLDWVPVRLAGVVYALIGHGEKALP 219 VL LDW+PVR+A Y +GH KA+P Sbjct: 186 DESDIESEEHHQAVHEGNVAPNIMNGCQNHHDVLFWLDWLPVRIASFGYMFVGHFSKAMP 245 Query: 220 AWFASLGDFHTSQYQVLTRLAQFSLA-REPHVDKVETPKAAVSMAKKTSFVVVVVIALLT 278 W SL D +QVL +A+ S D P V +AK+ +V+ VI++LT Sbjct: 246 VWLESLFDSQKPTHQVLIDVAEKSEDLLVNENDCTAEPCLLVRLAKRNVLLVLAVISILT 305 Query: 279 IYGAL 283 + G L Sbjct: 306 LSGLL 310 >UniRef50_UPI0000E0F474 regulatory protein AmpE n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F474 Length = 274 Score = 209 bits (532), Expect = 9e-53, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 127/288 (44%), Gaps = 20/288 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEH----WQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFL 56 MTL LL L ER+ +H + +D ++ ++ + ++++ + L Sbjct: 1 MTLIYLLLALFAERMLSKPDHCHSNFYIDKYIDWLNKKSYLTQSVSSSVLSLMWLLPGLL 60 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 L+ AL V ++ V L + + IG ++R Y YL AA++ D +L + Sbjct: 61 LVAALTLVNVSIIDFAVTLFVLYMAIGCPELRNTYKCYLQAANQGDIDTCNIYTQQLGLG 120 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 P R L+W+N++ Y AP+ +V G +G V Y LR + Sbjct: 121 QLEP---------RTFGQHLIWLNYQRYAAPMIMFVVFGLFGVV---AYGCLRTLHGY-- 166 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 Q + QS + VLHVLDW+P+R+ + L+GH ALP W L D T VL Sbjct: 167 -SQANNIHAQSSLAKVLHVLDWLPIRITAFGFLLVGHFSNALPKWVGFLFDTSTHAKLVL 225 Query: 237 TRLAQFSLARE-PHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 +A + D P V +AK+ +V ++A+LT+ G + Sbjct: 226 AEVAVAAEDVTSQDGDITTEPTTLVQLAKRNVLFIVAIVAVLTLSGVI 273 >UniRef50_A6FBG6 AmpE protein n=1 Tax=Moritella sp. PE36 RepID=A6FBG6_9GAMM Length = 282 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 137/292 (46%), Gaps = 18/292 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAF-FRRVKHFSLGRTLGMTIIAMGVTFL--- 56 M L + LL L+ ER+ L QLD+ L+ + F + F G G +I L Sbjct: 1 MALISLLLALLIERVVHLSAKLQLDNVLQRYLFPLLPSFINGGLFGTLVIIALPAMLMYS 60 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 LL AL G+ + + TL+ WLL+ L+ G R Y YL A SRND A+ A L + Sbjct: 61 LLDALTGLYYGIFTLVTWLLLLLMSFGGSDYRRDYRQYLKALSRNDLEAKGMYANCLDVN 120 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 + L+WIN+RFY A +F+ +V GP+ L Y R++ Sbjct: 121 SERFCST---LLTTAVAQQLVWINYRFYFAVIFYFVVA---GPIGLTMYVVARSYH---- 170 Query: 177 RYQTPHHRLQ---SGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 +Y HH Q SGI V+ ++DW+P RL +AL+ + ALP S D T ++ Sbjct: 171 KYVIQHHSKQLNRSGIHRVMRIVDWLPARLTMFGFALVAEEQAALPQSLRSWRDLSTPEF 230 Query: 234 QVLTRLAQFSLAREPHVDKV-ETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 +L ++ + DK + V +AK+ V VIALLTI G ++ Sbjct: 231 DLLGKVVYLASKANVETDKCYDYTCYLVQLAKRNIIFFVTVIALLTINGTII 282 >UniRef50_Q12IR5 Signaling modulator of AmpD, AmpE n=1 Tax=Shewanella denitrificans OS217 RepID=Q12IR5_SHEDO Length = 327 Score = 197 bits (500), Expect = 4e-49, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 131/330 (39%), Gaps = 51/330 (15%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRR-VKHFSLGRTLGMTIIAMGVTFLLLR 59 M LF+ L+ ++ ERL L WQ D ++++ +R SL T G + +L Sbjct: 1 MALFSLLIAILVERLRLLPSQWQFDALMQSYHKRFWDRDSLASTSGALLAMALPAIILGL 60 Query: 60 ALQGV---LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 L + F + LL W+ + ++C +R + Y+ AA R+D A A EL Sbjct: 61 ILYLLDGLFFGLFNLLAWIFVSVICFSHQNLRDTFKKYIQAACRSDVQASFRYASELDCC 120 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW-- 174 + A +ER+ ++ WIN+R+Y A +LI GPV + Y +R + Sbjct: 121 ECLDA-VNERDLGAKVGQISAWINYRYYGAVALFLIF---LGPVGAVLYCTVRYYSQREL 176 Query: 175 -----LARYQT--------------------PHHRLQSGIDAVLHVLDWVPVRLAGVVYA 209 L QT P H + + +LDW+P R+ + Sbjct: 177 SLNNQLQHCQTAKQALLEQGVVADNAELADEPSHIKMPLVQEIQKLLDWLPSRIFSFGFV 236 Query: 210 LIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLA----------------REPHVDKV 253 L G + W +H+ ++T A S A + V Sbjct: 237 LSGQFSSGMLIWRKLALQWHSGAKTLITETALASEASIVSEMLADDTLDSDSAKNAPLSV 296 Query: 254 ETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 A + ++K+ +++ V+++LTI+G + Sbjct: 297 RETLALLELSKRNFILLLTVLSVLTIFGVV 326 >UniRef50_A0YEZ0 Membrane protein required for beta-lactamase induction n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YEZ0_9GAMM Length = 291 Score = 196 bits (497), Expect = 9e-49, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 118/298 (39%), Gaps = 23/298 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF--SLGRTLGMTIIAMGVTFLLL 58 M ++V +L+ Q D+ +E R+ S LG I +T L++ Sbjct: 1 MEFLAIVIVYCLSQLWDSAGALQHDNWIERLSRKSTDMFTSSAMRLGFLIAVPSLTILIV 60 Query: 59 RAL-QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 AL +L + L+++++ L +G G + YL + ++ + + A ++ Sbjct: 61 LALVDSMLLGLLMLIIYVITLLFSLGRGDYGEDLYRYLNSWNQGNFESAYENALQIQGFQ 120 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLAR 177 D + ++ A L+ F + A +FW +V G G V + AR Sbjct: 121 PTDTVTDSLSLHQAVKTAFLYYGFERWFAVIFWFLVLGPVGAVGYRVA-------FLSAR 173 Query: 178 YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALP-AWFASLGDFHTSQYQVL 236 ++ V+H LDW+P RL + + L G+ +W D S+ Sbjct: 174 SDVLESDDRALAVRVIHYLDWLPSRLLVLSFTLTGNFVNGFSHSWGEIWSDQSASKLINS 233 Query: 237 TRLAQFSLAREP-------HVDKV-----ETPKAAVSMAKKTSFVVVVVIALLTIYGA 282 +A A +P H +K+ E A S+ +++ ++VIA+LT+ G Sbjct: 234 CAMAALDGAEKPLNEGDRDHSEKIIHHGREQILALKSLMSRSAMCWLIVIAVLTLVGG 291 >UniRef50_B3R5E5 Putative COBALAMIN BIOSYNTHESIS TRANSMEMBRANE PROTEIN, cobD/cbiB family n=3 Tax=cellular organisms RepID=B3R5E5_CUPTR Length = 334 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 18/256 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR 59 MT + LL LI E+ LG + + + A R +H F GR + + V L Sbjct: 1 MTFVSILLALIAEQFRALGRNNPIYEIVRALGDRAEHAFDTGRPRDAALAWLTVVLPLTL 60 Query: 60 ALQGVLF-----NVPTLLVW-LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 A+ V + +V L W +L+ + +G + ++ A +R+D H T+ E Sbjct: 61 AVIVVHYLLASISVALTLAWNVLVLYMTLGFRQFSHYFTDIHEALNRDDVHTARTLLHEW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 T + V E +R A + R FW +V PV G R +Y Sbjct: 121 TGLDTVEMPVSE--IVRHTLEAAIIAVHRHVFGVFFWFLV-----PVGPGGVVLYRTAEY 173 Query: 174 WLARYQTPHHRLQSGIDA----VLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFH 229 + P + ++LDW+P RL + +A++G+ E A+ AW ++ Sbjct: 174 LGRHWNLPSTERSPALGRFAARAFYLLDWIPSRLTSIGFAIVGNFEDAVYAWRNHARKWN 233 Query: 230 TSQYQVLTRLAQFSLA 245 + +L +L Sbjct: 234 DAVNGILLASGGGALG 249 >UniRef50_B8GLX9 Signaling modulator of AmpD, AmpE n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GLX9_THISH Length = 296 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 123/304 (40%), Gaps = 34/304 (11%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAF--FRRVKHFSLGRTLGMTIIAMGVTFLLL 58 M+L T L+ L ER + + L+ + + R + SLG + G + + +L Sbjct: 1 MSLITILIALFLERFAGTLDDLRQFRWLDGYANWIRERMESLGISDGTAVFVATLLPPVL 60 Query: 59 RAL------QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 G + + +++ ++I LLC+G + AY+ A + D + A + Sbjct: 61 LLAIVALLVHGAVLGLLDIVLGVIILLLCLGPKDLNDQVEAYVEAGAMKDEERQKRHARD 120 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 L VP ER L +Q N R + A LFW + G G + L++ Sbjct: 121 LLGQQEVPEDLRER-TLSVVQAMFSEANSRLF-AVLFWFAILGPLGAFIYRLGSLLKSPG 178 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKA-------LPAWFASL 225 + + + ++DW+P RL + YAL+G + A LP +A++ Sbjct: 179 EERP------EGVMAAAARLQALMDWIPARLFALGYALVGSFDTAFAVLTRFLPGSWANM 232 Query: 226 GDFHTSQYQVLTRLAQFSL----AREPHVDKVETPKAAVSMAK----KTSFVVVVVIALL 277 + +TS +L SL R H + A V A +T V + V+AL+ Sbjct: 233 AEENTS---LLREAGSGSLHLDHVRGEHWEDPNEINALVERANHLIMRTLVVFLAVLALM 289 Query: 278 TIYG 281 T+ G Sbjct: 290 TLAG 293 >UniRef50_Q2SXZ6 CobD/CbiB family protein, putative n=62 Tax=Burkholderiaceae RepID=Q2SXZ6_BURTA Length = 346 Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 88/257 (34%), Gaps = 18/257 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR 59 MT F+ LL LI E++ L + ++ H F G+ + + V + Sbjct: 35 MTFFSVLLALIIEQVRALSPSNPVFALFQSHAESAAHGFDAGKKKHGVLAWLVVVLPWVL 94 Query: 60 ALQGVLFN------VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + V F V L + + +G + ++ A + +D + E Sbjct: 95 GVGLVYFLLYKVSFVLAFLWNIAVVYFTLGFRQFSHYFTDIHLALNNDDVPRARDILREW 154 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 T I V E +R + + R FW ++ PV G R +Y Sbjct: 155 TGIDTVDMPVSE--IVRHTLIHAVVASHRHVFGVFFWFVL-----PVGPAGAVLYRIAEY 207 Query: 174 WLARYQTPHHRLQSG----IDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFH 229 + P + V+DWVP RL + +A++G+ E A+ AW + Sbjct: 208 LSRSWSVPADDRTAAFSTFAQRAFFVIDWVPARLTALGFAIVGNFEDAIYAWRNHTRQWP 267 Query: 230 TSQYQVLTRLAQFSLAR 246 VL +L Sbjct: 268 DPNDGVLLAAGSGALGA 284 >UniRef50_C6BBL8 Cobalamin biosynthesis protein CobD n=61 Tax=Proteobacteria RepID=C6BBL8_RALP1 Length = 326 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 96/238 (40%), Gaps = 18/238 (7%) Query: 12 FERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA--LQGVLFNVP 69 F RL K E W R S R +G+ A+ V L+L A L GV +V Sbjct: 42 FGRLAKAIERW--------MNRAPAAVSWSRLVGVVAWAIAVLPLVLLAGWLVGVARDVS 93 Query: 70 TLLVWLLIGL-LCIGAGKVRLHYH-AYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 LV L + L G LH H A + A R+ RA + + DE Sbjct: 94 PWLVAALDAVALYFAIGARSLHEHIAPIALALRDADVPRARALASRIVSRDLTQATDEPI 153 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA-WQYWLARYQTPHHRLQ 186 +++AL + + APLFWL+V G G V L A W Y AR+ T Sbjct: 154 ARAAVESALENGSDAIF-APLFWLVVAGAPGVVLYRLANTLDAMWGYRNARF-TGFGWAA 211 Query: 187 SGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSL 244 + ID VL+W+P RL + YAL+GH AL W + + + SL Sbjct: 212 ARID---DVLNWIPARLTAISYALLGHTADALNCWRTQAPQWSSPNAGPVMAAGAGSL 266 >UniRef50_B9Z6F4 Cobalamin biosynthesis protein CbiB n=2 Tax=Chromobacterium group RepID=B9Z6F4_9NEIS Length = 306 Score = 107 bits (267), Expect = 4e-22, Method: Composition-based stats. Identities = 53/309 (17%), Positives = 100/309 (32%), Gaps = 30/309 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGR--TLGMTIIAMGVTFLLL 58 MTL + + L E+L LG ++ + ++ G+ + LL Sbjct: 1 MTLLSLIFALALEQLRPLGNRNRVWLLFTRYANHLERNLNAGYNRHGVMAWLAAMLPPLL 60 Query: 59 RALQGVLF-----NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 AL G V L +L+ L +G + A + Sbjct: 61 IALGGYYLLAAVSPVLGLAWNVLVLYLTMGFRHFSSSFSEISVALTEGRDFDARQTLAHW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 T +E L Q + ++R +FW ++ GP + Y Sbjct: 121 TGQPTAELSVNEISRLSIEQGVVD--SYRHVFGTMFWFLIL--PGPAGAVLYRLSYILSQ 176 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 + + LDW+PVRL + +A++G E AL W + + + Sbjct: 177 KWGERSSGDDLFGRFAARAMSWLDWIPVRLTAISFAIMGDFEDALYCWRSQARTWGHYAH 236 Query: 234 QVLTRLAQFSLARE-------------------PHVDKVETPKAAVSMAKKTSFVVVVVI 274 +L A +L + + K+AV + +++ + + VI Sbjct: 237 GILLASAAGALGVKLGDPVRQDYTIKFRPELGLGEESDPDYLKSAVGLVWRSALLWLFVI 296 Query: 275 ALLTIYGAL 283 L+++ L Sbjct: 297 LLISVAAQL 305 >UniRef50_A4SW78 Cobalamin biosynthesis protein CbiB n=2 Tax=Polynucleobacter necessarius RepID=A4SW78_POLSQ Length = 319 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 90/257 (35%), Gaps = 16/257 (6%) Query: 1 MTLFTTLLVLIFERLFKL-GEHW-------QLDHRLEAFFRRVKHFSL--GRTLGMTIIA 50 MT F+ L LI E+ + HW LD F + + + G + + Sbjct: 1 MTFFSILFALIAEQYRPVTSSHWIARICARWLDWVAGEFGGKTEEGASPVGARIACMVAF 60 Query: 51 MGVTFLLLRALQGVL--FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARAT 108 + TFL+ + + + L +LI L G + + A A +D A T Sbjct: 61 ILPTFLVFIVYVTCMVTYPILGFLWNVLIAYLFFGFRQFSHSFTAVHEAIEAHDLPAART 120 Query: 109 MAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFL 168 GE + E E + + + LFW ++ GP ++ Y Sbjct: 121 ALGEWYGPELDTSNLSETEVISLALERAIIGSHHHVFGVLFWFMM--PMGPAGVVLYRLA 178 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDF 228 + + L +VLDW+P R+ + +A++G+ E AL W + Sbjct: 179 DIASQRWSERGDFN--LSEASRHFFYVLDWIPARITAMGFAIVGNFEGALYGWRYLTQKW 236 Query: 229 HTSQYQVLTRLAQFSLA 245 S V+ +L Sbjct: 237 SDSLSAVILAAGSGALG 253 >UniRef50_C3XB65 Cobalamin biosynthesis protein CobD n=2 Tax=Oxalobacter formigenes RepID=C3XB65_OXAFO Length = 316 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 95/256 (37%), Gaps = 16/256 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF-SLGRTLGMTIIAMGVTFLLLR 59 M F+ L L+ + + + L A V+ + G + + + +L Sbjct: 1 MFFFSILCALLIDHFRPMRTNNLFLALLRATGAHVRSWCDTGTSHHGCLGWIVANAMLAI 60 Query: 60 ALQGVLFN------VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + V + + LL +LI LC+G ++ A A + + GE Sbjct: 61 PVLMVYWICQLIHPLLGLLWSILILYLCMGFRNYNHYFSAIQMALLNGEQMQARNLLGEW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + ++ AL+ + + +FW ++ +GP + Y R Y Sbjct: 121 CDCDASAMDTAD-ITRMAIEKALISVQ-KDVFGIIFWFVL--PFGPAGAILY---RFSSY 173 Query: 174 WLARYQTPHHRLQSGI--DAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS 231 + P G+ + + +DWVPVRL + +A++G+ E A+ AW G + Sbjct: 174 LQKSWNEPDDSDSFGLFAKKIFYWIDWVPVRLTALSFAIVGNFEDAIYAWRNFAGRWKNR 233 Query: 232 QYQVLTRLAQFSLARE 247 +L A ++ + Sbjct: 234 NIGILLASAGGAMGVK 249 >UniRef50_A6SVI9 Cobalamin biosynthesis protein CobD n=2 Tax=Oxalobacteraceae RepID=A6SVI9_JANMA Length = 318 Score = 103 bits (257), Expect = 6e-21, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 18/257 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGR-------TLGMTIIAMGV 53 MT F+ L+ E+L L + A +++ + I A + Sbjct: 1 MTFFSIFFALLIEQLKPLRADNPVYAGARALAAKLEGSFNAGQAHHGRLAWALMIAAFCI 60 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 LL + L + L+V + + L +G ++ + A + D ++ E Sbjct: 61 PVALLYWISVKLGPLAALIVNVGVVYLTLGFRHYSHYFTSIQLALNNGDEATARSLLAEW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 T E ++ AL+ R FW + GPV + Y R +Y Sbjct: 121 TKRDTAGMDVSE-VARIAVETALV-TTHRNVFGVFFW--ILTPLGPVGAVMY---RVAEY 173 Query: 174 WLARYQTPHHRLQSGIDA----VLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFH 229 + P + + +DW+P RL +A++G+ E A+ AW G + Sbjct: 174 LARVWNEPKMAEREEFGRFASQAFYWIDWIPARLTAAAFAVVGNFEDAIYAWRNFAGRWQ 233 Query: 230 TSQYQVLTRLAQFSLAR 246 ++ ++ Sbjct: 234 DEAIGIILSAGGGAMGI 250 >UniRef50_Q7WVE4 Putative AmpE (Fragment) n=1 Tax=Xenorhabdus nematophila RepID=Q7WVE4_XENNE Length = 119 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 66/119 (55%) Query: 17 KLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLL 76 K+ +HWQL+ L F R+K SL +LGMT + +T+ L+ V F + +++ ++ Sbjct: 1 KMRDHWQLERYLVPAFARLKSHSLWGSLGMTFLVALLTWKLIDISSSVAFGILAIVLGII 60 Query: 77 IGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNA 135 I LLCIGAG++ Y YL A ++D + LTMI G + E LRE+QN+ Sbjct: 61 ISLLCIGAGRLWHDYRGYLQAVRQDDFGQQKKYLARLTMIQGTLPDTTKEERLREIQNS 119 >UniRef50_C1DBX6 Probable cobalamin biosynthesis transmembrane protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBX6_LARHH Length = 307 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 59/311 (18%), Positives = 102/311 (32%), Gaps = 31/311 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLG--RTLGMTIIAMGVTFLLL 58 MTL + L+ L E+L LG +L + R++ G+ + V + Sbjct: 1 MTLISILIALALEQLRPLGSRNRLLLHFTRYANRLERNLNAGESRHGLLAWLLAVVPFVA 60 Query: 59 RALQGVL-----FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 A V LL + + L +G A + H G Sbjct: 61 LAYGIYAALYQVTPVLALLWNVAVLYLTMGFRHFSGAITDISKALADGRVHDARAALGRW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG-GTWGPVTLMGYAFLRAWQ 172 + +E L ++ + +R A LFW +V G G V L +Q Sbjct: 121 SGQSTSELEVNEISRL-TIEQGVTDA-YRHVFATLFWFVVLPGPAGAVLYRLSCML--YQ 176 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 W R P + + LDW+PVRL + +A++G E A+ W A + Sbjct: 177 KWGLREGQPGDQFGLPARKLCEWLDWIPVRLTSISFAVMGDFEDAIYCWRAQAQAWGNRS 236 Query: 233 YQVLTRLAQFSLARE-------------------PHVDKVETPKAAVSMAKKTSFVVVVV 273 + +L A ++ + K A+ + + + + V Sbjct: 237 WGILLASAAGAIGVRLGDPLRQDYTVKYRPELGVGDEADPDYLKRAIGLVWRALVIWLFV 296 Query: 274 IALLTIYGALV 284 I L ++ L Sbjct: 297 ILLFSVARILA 307 >UniRef50_A1WB47 Cobalamin biosynthesis protein CbiB n=2 Tax=Comamonadaceae RepID=A1WB47_ACISJ Length = 328 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 81/258 (31%), Gaps = 17/258 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAF-------FRRVKHFSLGRTLGMTIIAMGV 53 M+ F L L+ E+ L + L A+ F + G+ ++ + Sbjct: 1 MSFFAILFALLIEQARPLARSNPIHAGLRAWAVSVNRNFDAGQSHHGWVAWGLAVLVPPL 60 Query: 54 TFLLLRALQGVLFNVPTLLVW-LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 L + P LVW + + + +G + H+ A D+ + Sbjct: 61 VVLAVHLALLHWLGWPFALVWNVAVLYVTLGFRQFSHHFTGMRDALEEGDAVDARARLAQ 120 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWG--PVTLMGYAFL-- 168 + E +R + + R L W + G P + Y Sbjct: 121 WKQVEVSELPRSE--IVRHVIEYSVIAAHRHVFGVLAWFSILAALGLGPTGAVLYRLAEF 178 Query: 169 --RAWQYWLAR-YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASL 225 R W Q P LQ V+DW+P RL + +A++G E+A+ W Sbjct: 179 VSRYWGARAREATQPPSESLQQAAAQAWTVIDWLPARLTALSFAVVGSFEEAIEGWRFHA 238 Query: 226 GDFHTSQYQVLTRLAQFS 243 F V+ + Sbjct: 239 QRFPNDNDGVVLAATAGA 256 >UniRef50_Q2SKR8 Membrane protein required for beta-lactamase induction n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SKR8_HAHCH Length = 293 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 98/299 (32%), Gaps = 27/299 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFR----RVKHFSLGRTL---GMTIIAMGV 53 M LL I ++ L + D ++F R+ Sbjct: 1 MKFLVLLLTYIMQKRLNLTLSRRHDQWAKSFLTFFELRLPVVRNSAPFYLLIALAAPALA 60 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 F++LR + V F TL V +++ LC+G G ++ YL + E Sbjct: 61 LFIVLRLTEDVFFGFLTLFVHIVMLFLCLGCGFLKQSIDIYLQQWREGRFQSAFRTLEEA 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + + + L+ F Y +FW + G G + Sbjct: 121 EIHIDDAQNMSPAQLHYAACSQYLYQTFVRYFMVIFWYMAIGPVGALLARLAHVA----- 175 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 + P + + V L+W+P RL + +AL G+ A+ + D H + Sbjct: 176 ----GRDPSVYVPQQMTTVYKALEWIPSRLLALSFALAGNFGGAIKHSANDMIDPHADAF 231 Query: 234 QVLTRLAQFSLAREPHVDKVE-----------TPKAAVSMAKKTSFVVVVVIALLTIYG 281 VL + A ++ P E A + + + ++IALLT+ G Sbjct: 232 TVLRKAAGGAVEIYPLAAPSEREGQDVALEVKQMCAIRDLLNRAMIIWFILIALLTVAG 290 >UniRef50_A4BKE4 Membrane protein required for beta-lactamase induction n=1 Tax=Reinekea blandensis MED297 RepID=A4BKE4_9GAMM Length = 267 Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 90/281 (32%), Gaps = 15/281 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 M ++ I + G + + + + L + + A+ +L Sbjct: 1 MGFPAIIIAYIVS-ISLSGHGEPATRWAQRWHKLLSSRKWDPRLVIVLFALLPAVVLGIV 59 Query: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 L + V +V + + +L +G Y D +A + + Sbjct: 60 LGLIGSRVLAFVVSVALLILAFKSGDQPESVADYRRKTEAGDDQGAWQLAVDELGLERQM 119 Query: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 E +Q L ++ + FW I G G + + Sbjct: 120 YEPGEEGIEEGIQAGLAYLYLERFFVHTFWYIAFGAPGILLVWLVTTA-----------V 168 Query: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA 240 + V L W+PVRL AL+GH W + DF +L Sbjct: 169 QGEEADAFCHQVKQALYWIPVRLMTFTLALMGHFAHGFQVWLDQVKDFERDDRMLLVSCL 228 Query: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 + +L +++E +S+ K+T +V IAL+ I+G Sbjct: 229 KSALGPVNEDNQLEET---LSLLKRTQLAWLVGIALMFIFG 266 >UniRef50_A1K7I5 Cobalamin biosynthesis transmembrane protein n=5 Tax=Betaproteobacteria RepID=A1K7I5_AZOSB Length = 308 Score = 99.8 bits (247), Expect = 8e-20, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 82/255 (32%), Gaps = 12/255 (4%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV-KHFSLGRTL-GMTIIAMGVTFLLL 58 MTLF+ + L+ E++ L + L + + F+ G+ G + V L Sbjct: 1 MTLFSLIFALLIEQVRPLPVQQVVQLPLRRLSALLIERFNDGQARHGKAAWWLIVLLASL 60 Query: 59 -----RALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L L + + + L +G + + A + + E Sbjct: 61 GSAVAYFLLWHLHPLLAFAFNVAVLYLTLGFRQESHFFTDIHLALRMGELDRARALLAEW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW-Q 172 A E L ++ AL+ R FW IV GP + Y R + Sbjct: 121 RGGQYHEASSSEVARLA-IEQALV-AAHRNVFGVAFWFIVL--PGPSGAVMYRLARFFAD 176 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 W R V+DW+P RL ++++G E A+ W + Sbjct: 177 EWGQRADIEFGDFGRFASRAFEVIDWLPARLTAASFSVVGDFEDAVYCWRTQAMLWPDKA 236 Query: 233 YQVLTRLAQFSLARE 247 +L +L + Sbjct: 237 SAILIASGAGALGVK 251 >UniRef50_C7RA12 Signaling modulator of AmpD, AmpE n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA12_KANKD Length = 289 Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 93/279 (33%), Gaps = 26/279 (9%) Query: 13 ERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGM-TIIAMGVTFLLLRAL----QGVLFN 67 ER +W + S + + + L+ G + + Sbjct: 23 ERQKYSNANW-FVAYQKRLGESFGEQSWFKGWLAEAALILLPVILIFLLFETFGDGFISS 81 Query: 68 VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 + L + ++I + C+G R Y + +++D A D + Sbjct: 82 LIMLALAVVILVHCLGPESPRKSLREYFSDIAQDDEQGAYEHAVNFAGK----EADDWAQ 137 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 R + A+ R Y A + W ++ G G + Y L + ++ S Sbjct: 138 TQRMVSQAIFTETQRRYAAVVIWFVLLGPAGALL-----------YRLLDWYLANNPEGS 186 Query: 188 GIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLA-- 245 + ++DWV R++ + Y L G + DF+ +++ ++ Sbjct: 187 LSAPLKSIMDWVAGRISVLAYLLAGDMASGVSKIKRKFFDFNVDGMELVEETGVAAIGPV 246 Query: 246 ---REPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 KV A+ + ++T ++ +A++++ G Sbjct: 247 LDCETEQKQKVAENLCALKLTERTGVILFAFVAVMSLLG 285 >UniRef50_A4BU75 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BU75_9GAMM Length = 291 Score = 97.1 bits (240), Expect = 5e-19, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 87/293 (29%), Gaps = 17/293 (5%) Query: 1 MTLFTTLLVLIF----ERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFL 56 M L LL L ++L +L R+ G+ ++ + + Sbjct: 1 MHLIAILLALWAKQYPQQLDRLRVTDSCYRYARWLQARLPVGLWDNRAGVALLLLPPVLV 60 Query: 57 LLRALQGV---LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 LF + +L+ ++ L G +L A D A L Sbjct: 61 AWLIQGWFGDWLFGLGGMLLSVVALLFAFGTEHSDQLVEQFLQAWREGDQAFARQAAASL 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 G + L + LFWL+V G G R + Sbjct: 121 NG--GTLPPTLGEGLPQAAVQGLFCYSHERIFGVLFWLVVLGPVGAFAYHLIVLARRF-- 176 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFH-TSQ 232 + H + V W+P R+ +AL G L W Sbjct: 177 -GDHHPDSGHGFRQSAREFAWVAGWLPARVTAGSFALAGSFIHCLEGWRERRHLPELDGN 235 Query: 233 YQVLTRLAQFSLAREPHVDKVE----TPKAAVSMAKKTSFVVVVVIALLTIYG 281 ++L +L P + T A S+ ++ V +V IALLT++G Sbjct: 236 AELLAATGFGALGLAPSNSLRDLLDQTLNDARSLIRRAIVVWLVAIALLTLFG 288 >UniRef50_Q3SJZ9 Putative cobalamin biosynthesis transmembrane protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJZ9_THIDA Length = 305 Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 95/307 (30%), Gaps = 31/307 (10%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGR--TLGMTIIAMGVTFLLL 58 M F+ L + E L L + F ++ T G + V L+ Sbjct: 1 MVFFSVLAAVALEHLRPLRQPMLHYRHYTRFIHWLEGKLNAGEYTHGAIAWTLAVVPWLV 60 Query: 59 R--ALQGVLFNVPTLLVWL---LIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 A+ VL +V +L W+ + +G + D A G Sbjct: 61 AVWAIFAVLEDVSPVLGWVWNVAVLYFTLGFKYYSDNAERIAHLLRAGDLDAARAQLGLW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + ++ + + R LFW ++ GPV + + RA Sbjct: 121 RGG-DTTHFTSDDITRVTIEQVMAE-SHRQMFGVLFWFVLLAPLGPVGAVLF---RAASI 175 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 R++ R V H+++WVP RL + YA+ G+ E A W + + Sbjct: 176 LSRRWEVSRGRFGLCACRVFHIINWVPARLTALTYAIAGNFEDATYCWRTQAAAWPEEEE 235 Query: 234 QVLTRLAQFSLAR-------------------EPHVDKVETPKAAVSMAKKTSFVVVVVI 274 V+ ++ + +AVSM + + + Sbjct: 236 GVVIAAGAGAMGVRLGQPVTVGGESVWRPELGTGQAPDPDFIASAVSMIWRGLVIWLTAG 295 Query: 275 ALLTIYG 281 L+ I G Sbjct: 296 LLIVIAG 302 >UniRef50_C7I5F9 Adenosylcobinamide-phosphate synthase n=1 Tax=Thiomonas intermedia K12 RepID=C7I5F9_THIIN Length = 324 Score = 93.3 bits (230), Expect = 8e-18, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 105/317 (33%), Gaps = 54/317 (17%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFR-RVKHFSLGRTL-GMTIIAMGVTFLLL 58 M + L+ L+ E+L LG + ++ ++F GR G+ + V L Sbjct: 1 MAFLSVLIALLVEQLKPLGRGSAVYRLRQSLADIAARNFDAGRPHHGVAAWFIAVLLPAL 60 Query: 59 RAL----QGVLFNVPTLLVW-LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L + +++ L W + + +G + ++ A + ND+ ++ + Sbjct: 61 ITLAIYLVALHYSLLLALAWNVAVLYFTLGFRQFSHYFTDIQDALNHNDAATARSLLKQW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + V + + +++AL+ + R+ L FW I+ P+ G R Y Sbjct: 121 KALDTVDMSTSD-VTQQTIEHALVSVQ-RYVLGVFFWFIL-----PIGPAGAVLYRLSDY 173 Query: 174 WLARYQTPHHRLQSGID----AVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFH 229 ++ + +LDW P RL YA++G+ E A+ W + Sbjct: 174 VAGKWNQTDSEASPALQSFSQKAFDLLDWAPARLTASGYAIVGNFEDAVDVWRGYSQLWA 233 Query: 230 TSQYQVLTRLAQFSLAR--------------EPHVDK-------------------VETP 256 V+ A ++ EP + + P Sbjct: 234 NRNTGVMLASAAGAVGIRLGATAAATPAAPTEPSWTQEGENGDLGMSGLAATMPGAIPQP 293 Query: 257 KAA---VSMAKKTSFVV 270 V + ++ + Sbjct: 294 AHLRNVVGLVWRSVLLW 310 >UniRef50_C6P7J7 Cobalamin biosynthesis protein CbiB n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P7J7_9PROT Length = 311 Score = 91.0 bits (224), Expect = 4e-17, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 72/245 (29%), Gaps = 12/245 (4%) Query: 13 ERLFKLGEHWQLDHRLEAF-------FRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVL 65 E+L L L L + F +H + +I V + L Sbjct: 13 EQLHPLSSRKYLYTWLAGYVEFFQRNFNAGQHSHGRIAWLLAVIVPVVLVTSVHCLLLNA 72 Query: 66 FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDE 125 + +L+ L +G + +Y A + G+ E Sbjct: 73 HPIFAWAFSVLVLYLTMGFRQFSHYYTDIHQALRERQLDRARELLGDWLGKSCND-LSHE 131 Query: 126 REYLRELQNALLWINFRFYLAPLFWLIVGG--TWGPVTLMGYAFLRAWQYWLARYQTPH- 182 ++ ALL R +FW ++ GP+ + Y Sbjct: 132 EVARVTIEQALL-CTHRNVFGVVFWFVIFMMLGLGPIGAILYRLALFLNNRWGNQDEADF 190 Query: 183 HRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQF 242 H+++W+P+RL +A++G+ E W + + ++ Sbjct: 191 GSFGEFARQAYHLMEWLPLRLTAGTFAIVGNFEDTAYCWRTQADSWPDPEAGIILSSGAG 250 Query: 243 SLARE 247 +L + Sbjct: 251 ALGVK 255 >UniRef50_C5V172 Cobalamin biosynthesis protein CbiB n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V172_9PROT Length = 312 Score = 90.6 bits (223), Expect = 5e-17, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 88/257 (34%), Gaps = 15/257 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF--SLGRTLGMTIIAMGVTFLLL 58 M+LF+ ++ L+FE+L L L L + + S + G + + +L Sbjct: 1 MSLFSLIVALLFEQLKPLHTRQHLSGWLSGYLEYFQQHFNSGEYSHGKAAWWLAILPILF 60 Query: 59 RALQGVLFNV------PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 A V + + LL +L L G G+ + A M Sbjct: 61 AA-TAVFWGLSYLHPILALLFNILALYLSFGFGRFSHGFTDIQQALQSGKLVEARAMLSA 119 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGG---TWGPVTLMGYAFLR 169 L V E+ ++ +LL + + W ++ G + Y +R Sbjct: 120 LCG-KPVDELNAEQVACVTIETSLL-AALQHLFGVIVWFVIFSLSGAGGAAGALLYCAVR 177 Query: 170 AW-QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDF 228 +W + + ++W+PVRL +A++G+ E + W + + Sbjct: 178 TLRTHWADELNEDESKFCDYACQMSVRIEWLPVRLTAATFAIVGNFEDTVYCWRSQAASW 237 Query: 229 HTSQYQVLTRLAQFSLA 245 S+ +L A + Sbjct: 238 PDSETGILLASAAGASG 254 >UniRef50_B7RSR6 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RSR6_9GAMM Length = 279 Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 104/289 (35%), Gaps = 26/289 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTI---IAMGVTFLL 57 MT ++ L+ ERL L + + + ++ LG L + + + L+ Sbjct: 1 MTFLALIIALVLERLSPLEDWLDGGGWFDRWQGQLASLGLGGGLQAVFSVGVPVVLAHLV 60 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 L ALQ +LF + + +L+ L G + Y + R D A Sbjct: 61 LNALQPLLFGLAWMAAAVLLLLYSFGRSNLGAFQERYRSQCRREDFQAAWLATSSEFKWF 120 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLAR 177 D + +Q L+ N++ + A LF+ ++ G G + Y Sbjct: 121 EPKEQLDAILIHKRIQQGFLYENYQRWFAVLFYFLLLGPLGALAYRL-------LYMTC- 172 Query: 178 YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLT 237 ++ +L +DWVPVRL + L G+ + + +L S +VL Sbjct: 173 ------EGEASRQHILFYVDWVPVRLLAAAFTLTGNFVASADELWDALRAPGMSSSEVLF 226 Query: 238 RLAQFSLAREPHVDKVETPKAA---------VSMAKKTSFVVVVVIALL 277 +A + ++ D+ ++ ++ S V VIA L Sbjct: 227 TVAMAATGQDRVPDEEGGLSGQRAAIENEMFAALVRRASVCWVAVIAGL 275 >UniRef50_A6F578 Membrane protein required for beta-lactamase induction n=1 Tax=Marinobacter algicola DG893 RepID=A6F578_9ALTE Length = 295 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 60/302 (19%), Positives = 99/302 (32%), Gaps = 28/302 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLG---RTLGMTIIAMGVTFLL 57 M L LL + R W + + F RV G +I + + +L Sbjct: 1 MVLVVFLLAYLLRRKLDAANAWCAEPLWRSAFNRVGAGRSGNEASLWKGLVIILVPSLML 60 Query: 58 L---RALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 L V + + + L+ +L +GA R Y + +R D + + Sbjct: 61 AAGEYYLHTVGWRMAAYPLEFLLMVLLMGAPGWRARLEVYSQSWARGDMQSALHHVMDSL 120 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 A E L L+ F + FW VGG + G LR Sbjct: 121 PAEERGAATSPDEMHLALSRTLMVNVFERFFLVAFWYAVGGIAAAFFVRGIIALRDHWPQ 180 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 +A + G + +L+W+P RL + + G + L DF Q Sbjct: 181 VA--------ARPGFARLAEILNWLPSRLLSFTFGVAGDLAGWMKEGKRRLFDFSLRTNQ 232 Query: 235 VLTRLAQFSL---AREPHVDKVETP-----------KAAVSMAKKTSFVVVVVIALLTIY 280 +L A +L A +P P +A + ++ V + ++ALL I Sbjct: 233 LLMGAASAALTGYALDPERFSKIHPDEWADFGGRSLEAIRDLLNRSMLVWICILALLVIA 292 Query: 281 GA 282 G Sbjct: 293 GV 294 >UniRef50_A1WEQ3 Cobalamin biosynthesis protein CbiB n=14 Tax=Burkholderiales RepID=A1WEQ3_VEREI Length = 338 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 95/322 (29%), Gaps = 52/322 (16%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAF---------FRRVKHFSLGRTLGMTIIAM 51 M+ F L L+ E+ L + L A+ + +H L L + + A Sbjct: 11 MSFFAILFALLIEQARPLARSNPIHAGLRAWALSVSRNFDTGKPQHGWLAWCLAVLVPAC 70 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 + L G + +L + + + +G + H+ A D Sbjct: 71 ATLAMHWLLLWGPGWP-FAMLWSVAVLYVTLGFRQFSHHFTGIRDALEGGDEDDARARLA 129 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 RE +R + + R L W V G + G R Sbjct: 130 HWQ--QVDVGLLPRREIVRHVIEYSVLAAHRHVFGVLAWFSVLAALG-LGPTGAVLYRLS 186 Query: 172 QYWLARYQ--------TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFA 223 ++ + LQ V+DW+P RL + +A++G E+A+ W Sbjct: 187 EFVARHWHPRPRMGPALASASLQQASARAWTVIDWLPARLTALSFAVVGSFEEAIEGWRF 246 Query: 224 SLGDFHTSQYQVLTRLAQFS-------LAREPH------------------------VDK 252 F V+ + A + H + Sbjct: 247 HAQRFPNDNDGVVLAATAGAIDVRLGGEALKAHAGMRTSQGLEIDSDMDDSDATPGREPE 306 Query: 253 VETPKAAVSMAKKTSFVVVVVI 274 V ++ V + ++ V ++++ Sbjct: 307 VGHLRSVVGLVWRSVVVWMLLL 328 >UniRef50_Q1YSB1 Inner membrane protein AmpE n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YSB1_9GAMM Length = 319 Score = 85.9 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 94/318 (29%), Gaps = 38/318 (11%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFF--------RRVKHFSLGRTLGMTIIAMG 52 M L+ + Q D ++ + R+ L + + + Sbjct: 1 MHFLIILIAIAVLESNGQLAFIQRDMWVQKWHGALVKLGSSRLPTLHNNSQLRVLVFVLV 60 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 L L + + L L + L C+G G + + RND A A Sbjct: 61 PVAALQLVLWYLGSGILGFLAELAVLLYCLGRGDLSAQISVLQSDIQRNDLQAAFHDAAV 120 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + H + REL L + F A +FW G + A Q Sbjct: 121 FNIGHRAVSAESAGGLFRELAATLPYRLFERSFAVVFWFFFLGAPVALAYRLLALHGDMQ 180 Query: 173 YWLARYQT-----------PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAW 221 A Q + +L L+W+PVR+ + L+G KA Sbjct: 181 LQTADIQIEQGIEEDAAEVLESDRPDEANKLLWYLEWIPVRVLALTLGLMGDFSKATAPL 240 Query: 222 FASLGDFHTSQYQVLTRLAQFSLARE-------------------PHVDKVETPKAAVSM 262 + TS VL R +L + ++ V++ Sbjct: 241 KELVFCAKTSTADVLRRCVFGALNNQTANPSETYEQEREEANSVVDEAAQLSQTGEIVAL 300 Query: 263 AKKTSFVVVVVIALLTIY 280 +++ +V IALL + Sbjct: 301 FRRSMTGWLVAIALLVLT 318 >UniRef50_Q2S8B8 Cobalamin biosynthesis protein CobD n=4 Tax=Gammaproteobacteria RepID=Q2S8B8_HAHCH Length = 334 Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 80/256 (31%), Gaps = 19/256 (7%) Query: 2 TLFTTLLVLIFERLFKLGEHWQLDHRLEAF------FRRVKHFSLGRTLGMTIIAMGVTF 55 TL +L L F+ L + R+ FS + A+ Sbjct: 23 TLLILVLALSFDALLGEPRRLHPLVGFGRYAGWVEGGIRIADFSAPTMRALGAAALTAAI 82 Query: 56 LLLRALQGVL------FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 L A + +L + L IG + H R+D+ A Sbjct: 83 LPWTAFAWLAGEWSESSAWVRILFSAFVLYLAIGWRSLLDHARRVAAPLRRHDADAARRS 142 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLR 169 + + +E ++AL N + A +FW +V G G V L Sbjct: 143 LS-MIVSRDTAGLSEEEIASAATESALENGNDAIFAA-IFWFLVAGIPGVVLYRLSNTLD 200 Query: 170 A-WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDF 228 A W Y ARY + VL+W+P RL YA G + AL W A + Sbjct: 201 AMWGYKNARYVNFG----WAAARLDDVLNWIPARLTAFSYACCGAMDSALQCWRAQGAHW 256 Query: 229 HTSQYQVLTRLAQFSL 244 + + +L Sbjct: 257 KSPNAGPVMAAGAGAL 272 >UniRef50_C1DPK8 Inner membrane protein n=51 Tax=Proteobacteria RepID=C1DPK8_AZOVD Length = 280 Score = 83.6 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 61/291 (20%), Positives = 105/291 (36%), Gaps = 23/291 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH------FSLGRTLGMTIIAMGVT 54 MT LL L+ ER + H Q D RV+ + +++ V Sbjct: 1 MTFLVLLLALLVERFSRWRLHIQQDIFWLRLLDRVETNPDLAGDPRRALFRLVLLSALVL 60 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 +LL L L+ L + + + + +G G + + A R DS A A Sbjct: 61 GVLLALLSLPLYGWLALPLHVFVLVYSLGRGDILTELKPFREAWRRGDSEAACLAAER-- 118 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + LR +Q LLW ++ + A +FW + GPV ++ Y Sbjct: 119 --DLAVGAEESLSLLRRVQGYLLWQAYQSFFAVIFWYAL---LGPVAVLAYRLT-----A 168 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 L T L+ + H+LDW+P R + +AL+G+ L D + Sbjct: 169 LTGEHTSLPALREHSVRLRHLLDWLPARGLALSFALVGNFGAVFRVLLRYLSDREVPAAK 228 Query: 235 VLTRLAQFS-LAREPHVDKVETPKAAV----SMAKKTSFVVVVVIALLTIY 280 V+ + + E V E + + + + VV+AL ++ Sbjct: 229 VVIEAGRAANEGLEAEVLAGEAGLMTLDELWQLLVRAGMLWYVVMALAILF 279 >UniRef50_Q1MZQ5 Membrane protein required for beta-lactamase induction n=1 Tax=Bermanella marisrubri RepID=Q1MZQ5_9GAMM Length = 280 Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 98/292 (33%), Gaps = 23/292 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFF------RRVKHFSLGRTLGMTIIAMGVT 54 M L ++ +R + + + + ++ K + +G+ ++ Sbjct: 1 MKFIVLLFTVLLQRQTRKEGYERNRRWFKRLLSPFHFEQQSKTMQIMMYVGVVVLPCVAL 60 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 L+ + G+L + +LL+ + + L +G V + Y D A A Sbjct: 61 SALIERMDGLLGSFVSLLLQVALLLYILGRDNVSQKFKDYKNHWHNQDYQAAFYCARNFL 120 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + + AL+ F + +FW ++ G G + L W Y Sbjct: 121 SLEEQAQ-TSPYTLHTTVSKALIRAWFMRFFVFVFWYLLAGIGGA----MFCLLSYWFY- 174 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 + +VL ++W+P RL + +L G ++ DF T+ Q Sbjct: 175 -------SESKIPWMKSVLDTMEWLPSRLLALSMSLAGDFNRSFSTVSKLWTDFQTNADQ 227 Query: 235 VLTRLAQ----FSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGA 282 L + T + + + + + ++V+A LTI+ Sbjct: 228 ALGHTLETFNHQQEKGFDEAGAARTIDESNRLMLRCAILWLLVVAFLTIFAG 279 >UniRef50_B7VKP2 Cobalamin biosynthesis protein CobD/CbiB n=2 Tax=Vibrio RepID=B7VKP2_VIBSL Length = 321 Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 75/237 (31%), Gaps = 11/237 (4%) Query: 1 MTLFTTLLVLIFE---RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVT-FL 56 M + +L + R L ++E R FS + + + F Sbjct: 19 MMIAALMLDHLLGEPKRFHPLIGFGYAVEKIEKLLNRATKFSGLIAWIAATVPLCLLSFW 78 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 L L + + L +++ + IG + H S+ D G + Sbjct: 79 LQHTLLSMGNTLGFWLFNIVVLYIAIGQRSLLEHAQWIHQPLSQGDLDLAREKVG-WIVS 137 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA-WQYWL 175 + +++ L N + LFW + G G + L A W Y Sbjct: 138 RNTETMDQRQITSSTIESVLENGNDAIF-GTLFWFALLGAPGALLFRLVNTLDAMWGYKN 196 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 R+ + V V+ W P RL + Y+L+G+ + AL W + Sbjct: 197 ERWLEFGYVAA----KVDDVMGWAPARLTALSYSLLGNTKLALKCWKEQAKHCSSPN 249 >UniRef50_Q21ME0 Signaling modulator of AmpD, AmpE n=2 Tax=Alteromonadales RepID=Q21ME0_SACD2 Length = 281 Score = 81.7 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 95/290 (32%), Gaps = 21/290 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGR-----TLGMTIIAMGVTF 55 M L T ++ + F +++ D + ++ T + ++ + Sbjct: 1 MDLLTLIIAIAFVQVWGAENPLHKDGWFVQWCDGLQARLKASAIREYTWLVAVLVPVLCV 60 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 LL G + L + +++ L +G G+ Y A D + A L + Sbjct: 61 WLLAEAVGAVSAWLLLPISVVVMLYSLGRGEFTNIVSEYTKACYVEDWPSAMERAQRLGV 120 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 D ++ + F +FW ++ GPV + Y L + Sbjct: 121 HTDGVDEGDWSALHEQVLTEAGYRGFERSFVIIFWFLIT---GPVVALLYRLLFIYCQQR 177 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQV 235 P L ++W RL G+ +A G+ L F S +V Sbjct: 178 PSEDLP--------AKCLWAMEWPVTRLLGLSFAFTGNFVGCYNRLKECLICFKRSSQEV 229 Query: 236 LTRLAQFSLAREPHVDKVETPK-----AAVSMAKKTSFVVVVVIALLTIY 280 LT+ +L+ + ++ + + K+T + + AL+ I Sbjct: 230 LTQSILGALSVDENLTQSCEVTRKELDLLSKLYKRTLWFWLASAALIIIV 279 >UniRef50_B8KJ07 Putative uncharacterized protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KJ07_9GAMM Length = 292 Score = 80.9 bits (198), Expect = 4e-14, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 84/277 (30%), Gaps = 41/277 (14%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTI---IAMGVTFLL 57 MT ++ L +++ + Q D L + V + L + + + Sbjct: 1 MTFLAMIIALSLQQVIQPDNFLQRDRWLFLWDDFVAARLSAQILRVLTTLGVIAVAAYWA 60 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAY----------------------- 94 L L G LF + LL + + +G Y Sbjct: 61 LSVLDGWLFGLAELLATAGLFVWSLGRDDFHTVLERYEARASENPQAAGAALEGLWAPEP 120 Query: 95 ---LTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL 151 A D A + + E G G + + L++ + + APLF+ Sbjct: 121 EAMADALHDGDLQADSQDSEEAPGDDGQQEGSTKTPDRDQALQRLVYSGYARWFAPLFYF 180 Query: 152 IVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 V G V A L A G VL DW+P R+ G+ +AL Sbjct: 181 AVAGPIAAVVYRAVALLAADN------------RGPGYLQVLRWADWIPARILGLTFALS 228 Query: 212 GHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREP 248 G + T Q+L LA + +EP Sbjct: 229 GDFMAVSQRAPLAHFADTTPAPQLLCELADVACNQEP 265 >UniRef50_Q5ZVD4 Inner membrane protein AmpE n=6 Tax=Legionella RepID=Q5ZVD4_LEGPH Length = 259 Score = 80.6 bits (197), Expect = 5e-14, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 109/292 (37%), Gaps = 51/292 (17%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAF-------FRRVKHFS--LGRTLGMTIIAM 51 M L +L L+ ER +Q + + K FS + + + + Sbjct: 10 MKLLVIVLCLLSERFLIHSVSYQRFSWFNNYCLFLKKTIDKNKCFSNPWATLIAIILPIV 69 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 +TFL+ +LQ +LF + L++ L I C+G Y A++ ++ A Sbjct: 70 FLTFLVYFSLQSILFGLFGLILSLFIFYYCLG--PQNAFYPILKKQANQTETDAIGEY-- 125 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 +N + + A +FW I+ G +T + Sbjct: 126 ------------------------FAEVNSQLF-AVVFWYIIAGPIAALTYRLITLCKEI 160 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS 231 + + + + + ++L+W+P R+ +++ L+G+ ++ + + + S Sbjct: 161 NF-----------ISTQANQITNILEWIPARITALLFLLVGNFQRGFHLFAQYVLTYPDS 209 Query: 232 QYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 ++L ++ + AA ++ + + V++V IAL T+ L Sbjct: 210 NDKILRGCGLQAVRINDTEEVPMA--AAENLVEHATIVLLVFIALFTLVAWL 259 >UniRef50_A1TZ82 Signaling modulator of AmpD, AmpE n=2 Tax=Marinobacter RepID=A1TZ82_MARAV Length = 295 Score = 80.6 bits (197), Expect = 5e-14, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 88/301 (29%), Gaps = 28/301 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL----GMTIIAMGVTFL 56 M+L L+ + R +H D +F R G+ G ++ + L Sbjct: 1 MSLVVFLIAYVIRRRLDRADHLAGDEVWRNWFHRWGRVEAGQERSVWRGALLVVLPSLAL 60 Query: 57 L--LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 + + L++ ++ +GA R AY A R D A E Sbjct: 61 AGAWALSSEAGYRYALYPLELVLMVVLMGAPGWRKVLRAYSDAWRRGDMQAAWHHVQERL 120 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 A + AL+ F + +FW VGG G L Sbjct: 121 PASERGAALSPEAMHLSVSRALMVSVFERFFLVVFWYAVGGIALAFLARGLVALAG---- 176 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 Q P + ++ W+P RL + L G F Sbjct: 177 ----QWPQAAARERYQRAARLIGWIPSRLLSCTFGLAGDLAGWSREIRKVFPGFGKKTAD 232 Query: 235 VLTRLAQFSLA---------REPHVDKVE-----TPKAAVSMAKKTSFVVVVVIALLTIY 280 VL A SL E H ++ + A + ++ V + ALL I Sbjct: 233 VLMISANGSLTGYALDPARFSELHPEEWPDFGGRSLSAIRDLLNRSMLVWICAFALLVIA 292 Query: 281 G 281 G Sbjct: 293 G 293 >UniRef50_A4VJ38 Cobalamin biosynthesis protein cobD n=67 Tax=Proteobacteria RepID=COBD_PSEU5 Length = 303 Score = 78.6 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 74/211 (35%), Gaps = 7/211 (3%) Query: 36 KHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYL 95 R+ G+T + V L L A L L +++ L +G + H Sbjct: 43 AAGRGWRSHGVTAWCLAVLPLTLLAWLLSLLPGIGWLAEIVLLYLALGLRSLGEHALPVA 102 Query: 96 TAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGG 155 A R+D + + +E ++ L + + A LFW IV G Sbjct: 103 QALWRHDLPEARRRVACI-VSRDTSQLDEEGVARAATESVLENGSDAVFAA-LFWFIVAG 160 Query: 156 TWGPVTLMGYAFLRA-WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG 214 G V L A W Y AR++ + +L++VP RL V YAL+G Sbjct: 161 APGVVLYRLSNTLDAMWGYRNARFERFG----WAAARIDDLLNYVPARLVAVTYALLGRT 216 Query: 215 EKALPAWFASLGDFHTSQYQVLTRLAQFSLA 245 +AL W + + + +L Sbjct: 217 RRALRCWRTQAPLWDSPNAGPVMAAGAGALG 247 >UniRef50_A8FV25 CobD; cobalamin biosynthetic protein n=2 Tax=Shewanella RepID=A8FV25_SHESH Length = 301 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 5/197 (2%) Query: 51 MGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMA 110 + L+L + L+ + L+ L IG + H +A A D Sbjct: 54 VLAVILVLLPILPFLWASRLWWLDALVLYLVIGGRSLSEHGNAVGQALQHGDLDLARKKV 113 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 G + + +++ L++ L N + A LFW V G G + L A Sbjct: 114 G-MIVSRKTENLTEQQVVNATLESVLENGNDALFGA-LFWFCVAGLPGALVYRFSNTLDA 171 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHT 230 + + G +L+++P RL + YAL G+ AL W + Sbjct: 172 MWGYKNQTYLHFGW---GAAKFDDLLNYIPARLCALAYALGGNVTLALSCWREQAPQCAS 228 Query: 231 SQYQVLTRLAQFSLARE 247 V+ SL Sbjct: 229 PNGGVVMAAGAGSLNIT 245 >UniRef50_UPI0001698E73 adenosylcobinamide-phosphate synthase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698E73 Length = 175 Score = 77.1 bits (188), Expect = 6e-13, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 11/159 (6%) Query: 96 TAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGG 155 A R + +A +L E Y + + +L A +FW ++ G Sbjct: 3 EARERGNEDQARVIARQLIGD---EPPTQEPAYSQAVTEGILSQANSRVFAVIFWFLLLG 59 Query: 156 TWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGE 215 G + + L + + H +L +LDW+PVR+ YA+ G E Sbjct: 60 PLGAILYRVASLLPSSRLADESLDFYHASR-----DLLGLLDWLPVRITAFSYAIAGSFE 114 Query: 216 KALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVE 254 AL AW + +L +L +++ E Sbjct: 115 DALFAWRNYSENSSGG---LLVATGSGALRMNNVLEQAE 150 >UniRef50_A9KED3 Beta-lactamase induction protein n=6 Tax=Coxiella burnetii RepID=A9KED3_COXBN Length = 258 Score = 73.6 bits (179), Expect = 7e-12, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 96/287 (33%), Gaps = 42/287 (14%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVK-----HFSLGRTLGMTIIAMGVTF 55 M L LL L+ +R + + + E +++ +K F G+ II + V F Sbjct: 1 MALTAVLLCLVIQRWLHFDSYTRQYNWFEPYYQWLKARFGQTFHWNGLGGVAIIILPVVF 60 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 + + + + + + L + VR + Sbjct: 61 IYILVALFICRTLTIVGYYFLTVAVLWYCMDVRSLAKS---------------------- 98 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 + +L + A +FWL++ G+ G V LR + Sbjct: 99 ------------QSGAVAQKVLIHVYERVFALIFWLLILGSTGVVLYTLVITLRQFLEKS 146 Query: 176 -ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 A+ L S + V VLDW+P+RL G+ +AL+GH W + Sbjct: 147 PAQNNEEGTGLLSAVAIVQGVLDWLPLRLIGITFALVGHFSPTFALWRLKVLTGIDKTPD 206 Query: 235 VLTRLAQFSLAREPHVDKVETPKAAV--SMAKKTSFVVVVVIALLTI 279 + +L + + + + +V +VVIAL TI Sbjct: 207 LAAACGLTALDMNKETKLLSLEELKSLDGLISRALWVWLVVIALFTI 253 >UniRef50_A4A5I5 Transmembrane protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A5I5_9GAMM Length = 261 Score = 73.6 bits (179), Expect = 7e-12, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 22/282 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 MT ++ L ++ + Q D L + R ++ GR + + + Sbjct: 1 MTFLAMIIALSLHQVIQPDSFLQRDTWLLQWNR----WATGRIVSPAVRVAITLIAVTLV 56 Query: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 + L + L LL L G L + TA R ++ A + + Sbjct: 57 VVWALATIDDWLFGLLELLATAGLFVWSLGRADFHTALERFEARAATDPLAATAALEALW 116 Query: 121 AGCDEREYLREL-QNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQ 179 A E E L++ + + APLF+ +GG V + L Sbjct: 117 APIHEPESHEPGPMERLVYSGYARWFAPLFYFALGGVLAAVLYRVVSVL----------- 165 Query: 180 TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRL 239 + S +L DW P R+ G+ +AL G T Q+L L Sbjct: 166 AEREQPPSAYTQLLRWADWAPSRVLGLTFALTGDFMAVSKRAPLKHFADATPASQLLQEL 225 Query: 240 AQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 A + ++ +++ + +V ++++ I+G Sbjct: 226 AGVACNHGESARELGNILY------RSAGLWLVFLSVVLIFG 261 >UniRef50_C6XB70 Cobalamin biosynthesis protein CbiB n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XB70_METSD Length = 305 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 74/252 (29%), Gaps = 13/252 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR 59 M + L L H + + ++ F+ G+ + L Sbjct: 1 MNFIVLVSALALSYYRPHKSLDWLFHICTPYAQLLERNFNGGKNRHGVVAWTLGALLPSI 60 Query: 60 ALQGVLFNVPTL------LVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + + + + L L + + L + + TA + + T+ + Sbjct: 61 VIGFLYYGLMELNVIVGMLFGIAVLYLILRFSRFSQRAERIATALADKNIDEARTLLSQW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 ++ L + P+FW ++ G G + Q Sbjct: 121 EPPLETSHYNAAEVARVSIETTLRRA-HQGLFGPIFWFVLLGPGGALLYRLSHLF--MQS 177 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 W HR LDW+P+R++G +A++G E A+ W + Sbjct: 178 WEPHLDNHFHRF---AHRAFEWLDWLPIRISGACFAIVGDFEDAVYCWRTQAAGWPEQSL 234 Query: 234 QVLTRLAQFSLA 245 ++ +L Sbjct: 235 GIILASGAGALG 246 >UniRef50_D0L1E9 Signaling modulator of AmpD, AmpE n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E9_HALNC Length = 337 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 108/336 (32%), Gaps = 53/336 (15%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEA----FFRRVKHFSLGRTLGMTIIAMGVTFL 56 M LF L+V++ ER + W D ++ +R+ + + + L Sbjct: 1 MKLFILLVVVVLERSWTALARWCADRGVQKRVLSLRQRLSAVLGESLALLVVWFVPPLIL 60 Query: 57 LLRALQGVLFN----------VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHAR 106 + + + L+V + LL + G+ A A + D+ Sbjct: 61 AWFLAWFLAWIDADQGSLLGVLLYLVVSIATLLLLVAPGQAHKKAKALAQACQQEDAEHA 120 Query: 107 ATMAGELTMIHGVP---AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLM 163 A +L P A E ++L ++ + F + A LFW +V G G + Sbjct: 121 AQCRAQLWRDGADPIEQADSIEEASPQQLAERIITLGFNEWFAVLFWFVVLGPAGALFYR 180 Query: 164 ------------------GYAFLRAWQYWLARYQTPHHRLQSGID----AVLHVLDWVPV 201 G +PH + S ID +L +LDW Sbjct: 181 LTDWFAQPPPIINSAVNSGANTTANAGAINESLPSPHAQTGSFIDALPARLLALLDWPIA 240 Query: 202 RLAGVVYALIGHGEKALPAWF----ASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPK 257 RL + L G + L AW + ++ R+ SL E D E Sbjct: 241 RLYAFLLLLAGGFNRGLDAWLNGPIKNDLSLAEKNADLIGRVGNASLELEREDDCAEGAV 300 Query: 258 AAVSMAK----------KTSFVVVVVIALLTIYGAL 283 ++ + + + ++AL T+ G L Sbjct: 301 CLADQSRWYKNASAIVLRALMIGLGIVALFTLSGWL 336 >UniRef50_A1WY59 Adenosylcobinamide-phosphate synthase n=2 Tax=Proteobacteria RepID=A1WY59_HALHL Length = 308 Score = 71.3 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 71/221 (32%), Gaps = 15/221 (6%) Query: 1 MTLFTTLL-VLIFERL-------FKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMG 52 M L+ + +R+ L ++ LE R + R + Sbjct: 1 MPFPALLIGAWLLDRVLGEPRAGHPLNGFARIAGWLERLLNRNNLPAAERRKAGMLAVGI 60 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 + + +V L + LC+G +R H +R D A A A Sbjct: 61 LVGPAVLLTTLFTLGPLGWVVELGLLYLCLGGRSLREHALGVAQPLARGDL-AGARAAVA 119 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA-W 171 + A E ++ L N A LFW +V G G V L A W Sbjct: 120 RIVSRDAQAMDAEDTARATTESTLENGNDA-VFATLFWFLVAGAPGAVAHRLVNTLDALW 178 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 Y R+ + + +L W+P RL + YAL G Sbjct: 179 GYRTPRFTDFGY----AAARLDDLLGWIPARLTALTYALAG 215 >UniRef50_B3PLN3 Putative AmpE n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PLN3_CELJU Length = 329 Score = 70.9 bits (172), Expect = 4e-11, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 23/263 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV---KHFSLGRTLGMTIIAMGVTFLL 57 M + ++VL Q D R+ + L + + + LL Sbjct: 1 MIFLSLVVVLAILHWLGRAGFIQYDGWFRLLVNRLHKIPGIASVPVLALVLALLIPLVLL 60 Query: 58 LRALQGVLFNV---PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 L + N+ +++ + L +G G + AY+ ++ D+ A + L Sbjct: 61 LVIFVLLYHNLGRTSLFFLYVPVLLYSLGRGNLVEDVKAYIELVNKGDNVAASLWVENLR 120 Query: 115 M--------IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYA 166 + D R + + + F A +FW ++ G +G + Sbjct: 121 GNKKPVGKDLDCDIEINDWRSLHTQALKTIAYRGFERTFAVIFWFVIVGPFGALLYRLSV 180 Query: 167 FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLG 226 R + L +L+ VRL GV +A +G+ E +L Sbjct: 181 LYRELAEEGSA-------DAQVAAKWLWLLELPAVRLMGVTWAFVGNFET--SPLRRNLL 231 Query: 227 DFHTSQYQVLTRLAQFSLAREPH 249 D ++ VL + +L + Sbjct: 232 DIESASSSVLNECLRGALGAQTE 254 >UniRef50_A6W1J9 Cobalamin biosynthesis protein CobD n=2 Tax=Marinomonas RepID=A6W1J9_MARMS Length = 330 Score = 69.8 bits (169), Expect = 9e-11, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 93/306 (30%), Gaps = 38/306 (12%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAF---------FRRVKHFSLGRTLGMTIIAMGVTFL 56 + L+ +RL + W + S R +G+ + V Sbjct: 28 LVAALVLDRLLGEPKSWHPLIWFGRWVDLCRQYIQLPLDASASRQRLVGVLAWLVAVLPW 87 Query: 57 LLRALQGVLFNVP--TLLVWLLIGLLCIGAGKVRLH----YHAYLTAASRNDSHARATMA 110 L+ L + +L+ +L+ IG +R H Y + +D A A Sbjct: 88 LMVLLALLWLLPDWLDILLSVLVLYFAIGWQSLREHALAIYQPLSASPLSDDKLDEARRA 147 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 + + +++ L + + AP+FW ++ G G + L A Sbjct: 148 VSYIVSRDTQNLDESAVAKASIESVLENGSDAIF-APIFWFLIFGAPGVLLYRLANTLDA 206 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHT 230 + + VL+++P RL Y GH A+ + + + Sbjct: 207 MWGYKTESLLHFGWFAA---RFDDVLNYIPARLVIYTYGACGHWRAAIRSARRPSARWKS 263 Query: 231 SQYQVLTRLAQFSLAR-------------------EPHVDKVETPKAAVSMAKKTSFVVV 271 + +L E + K K A+ + K+ + Sbjct: 264 PNAGPVMAAGAGALGIQLGGEAPYFGKIETRPILGEGELPKPHHLKEAIWLVDKSVILWG 323 Query: 272 VVIALL 277 +V+ LL Sbjct: 324 LVVCLL 329 >UniRef50_B3PIN7 Cobalamin biosynthesis protein CobD n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PIN7_CELJU Length = 319 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 8/178 (4%) Query: 68 VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 + L ++ +G + H +A ++ S A + + A + + Sbjct: 82 LLALAFGAVVLYASLGWRSLEEHVRDVDSALAQ--SLPAGRAAVQHIVSRDCAAMDESQV 139 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA-WQYWLARYQTPHHRLQ 186 L+ L + PLFW + G G + L A W Y AR+ Sbjct: 140 VRASLETLLENTSDAIV-GPLFWFTLLGPAGALVYRLSNTLDAMWGYRSARFNYFG---- 194 Query: 187 SGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSL 244 +L+ VP RL + +AL+G AL +W + + + +L Sbjct: 195 RAAARWDDLLNLVPARLTALAFALVGDTASALGSWRRFARHWASPNAGPVICAGSGAL 252 >UniRef50_A8PLW8 Transmembrane protein n=1 Tax=Rickettsiella grylli RepID=A8PLW8_9COXI Length = 247 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 85/289 (29%), Gaps = 56/289 (19%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL---------GMTIIAM 51 MT T LL L ER G + E + ++ + + + + Sbjct: 1 MTFITLLLCLGLERFLHRGNFLARFNWFEQYASKIDDLTKNYAWTQHYFIPLLLVVLPIV 60 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 ++ + + L+ + C+G + Sbjct: 61 VPIAVIYSLSAAFIQGLLAFLIGAAVLFYCLGPINLFDS--------------------- 99 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 +E+ + W A +FW+ + G + Sbjct: 100 ------------------KEIHQRIFWQANESLFAVIFWMALLGPIAALIYRLV------ 135 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS 231 A + L V +LDW+P+R+ +++AL G K L + Sbjct: 136 -ERSAHIHASYPALGKSAQQVRALLDWLPIRVFSMLFALAGDFVKTSQYCLDYLFREVSF 194 Query: 232 QYQVLTRLAQFSLAREPHVDKVETP-KAAVSMAKKTSFVVVVVIALLTI 279 +++ + + +L + A+ + ++ + ++++ +T+ Sbjct: 195 NRELIEKSGRIALGLTETAELTNENYSTALKLIDRSLILFLIIVFAVTL 243 >UniRef50_A1TXA8 Adenosylcobinamide-phosphate synthase n=2 Tax=Marinobacter RepID=A1TXA8_MARAV Length = 319 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 76/222 (34%), Gaps = 9/222 (4%) Query: 29 EAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA--LQGVLFNVPTLLVWLLIGLLCIGAGK 86 + + + LG+ + V ++ A LQ +L LL + L I Sbjct: 42 QRLNDQQTFPAQSLLLGVLATLVAVMPAVVLAIFLQFLLEGWLWLLTQVAGVWLAISLRG 101 Query: 87 VRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLA 146 + H A TA + D ARA +A + DE ++ L + + Sbjct: 102 LAEHGRAVSTALACGD-GARARLAVGRIVSRDAAVLSDEGVAAAASESMLENGADAVFSS 160 Query: 147 PLFWLIVGGTWGPVTLMGYAFLRA-WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAG 205 FW +V G G V L A W Y RY + ++WVP RL Sbjct: 161 V-FWYLVAGLPGLVLHRLVNTLDAMWGYRTPRYLYFG----RCAARLDDAMNWVPARLTA 215 Query: 206 VVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 + YAL+G+ A+ W + + + +L Sbjct: 216 LTYALLGNTRLAVKCWREQSRAWDSPNAGPVMAAGAGALGVT 257 >UniRef50_Q1GYJ0 Adenosylcobinamide-phosphate synthase n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GYJ0_METFK Length = 304 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 75/252 (29%), Gaps = 14/252 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR 59 M + L + L + + ++ F+ G L V L Sbjct: 1 MNFIALIGALALTYYRPHRKLDWLQEIVAPLVQLLERNFNGGNRLQGMTAWALVVLLPSL 60 Query: 60 ALQGVLFNVPT------LLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + V + + ++ + + + + + A + + G+ Sbjct: 61 LVGAVYYVLLQVNAILGIVFGVALLYFTLRLSQFGPRAEEIIAALRTGNIDEARLLLGQW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 I + ++ L ++ + AP+FW ++ G G + + Sbjct: 121 EKIDS-DNFTLTQVAQVSVETVLSRSHYGLF-APIFWFVILGPAGALFYRLSHIV--TME 176 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 W TP + V L+W P + +A++G E A+ W + + Sbjct: 177 WQPEEATPFND---WARKVFRWLNWPPAFVTAGSFAIVGDFEDAIYCWRSQAETWPDKAM 233 Query: 234 QVLTRLAQFSLA 245 ++ +L Sbjct: 234 GMILASGAGALG 245 >UniRef50_A0Z7A0 AmpE protein n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z7A0_9GAMM Length = 268 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 83/270 (30%), Gaps = 23/270 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF---LL 57 MT L+ G D EA RV LG ++ + L+ Sbjct: 1 MTYLAFLVATGLYLAIGSGGPLHNDRWYEALQGRVAALEPDFWLGFVLLVVVPCAGFTLV 60 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT--M 115 + + LL+ G + + + + + D M Sbjct: 61 YAIFEEMFGAAAVLLLGTPALFFSFGRLQWPELVNRFKSRVAAGDVEGALLALDAAGYRM 120 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 + A ER+ R LL+ F+ + +P+F+ + G + V Sbjct: 121 LQVDDAISAERDGAR----FLLYEGFQRWFSPVFYFLFFGPFFAVGYRLVVL-------- 168 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQV 235 I +L+ LDW+P R+ + + IG+ E P + + D ++ Sbjct: 169 -----GAGDRNGPISRLLYFLDWLPARILLLTFGAIGNFESIRPLFMNKVLDADIQTNEL 223 Query: 236 LTRLAQFSLAREPHVDKVETPKAAVSMAKK 265 L + + + + + + K+ Sbjct: 224 LMQGFELASPVTETALD-QQIERVRELLKR 252 >UniRef50_C3MJX6 Cobalamin biosynthesis protein CobD n=12 Tax=Sulfolobaceae RepID=C3MJX6_SULIL Length = 305 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 6/172 (3%) Query: 41 GRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASR 100 G + G+ + M V L + + + + L+I + + + SR Sbjct: 41 GYSYGVLLWIMSVLPPLFIFVYLPVEAPIPIYLNLIILAFSLKTTFSIKMLYDIVKKGSR 100 Query: 101 NDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPV 160 D AR A ++ + + D+ L +L +P+FW ++ G +G + Sbjct: 101 LDEQARY-YAQQI--VRRDLSKSDKGHIASALIESLFESTVDGIASPIFWFLIFGIFGAM 157 Query: 161 TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 + + + + ID +L+++P RL G++ G Sbjct: 158 LQRLANTMDSMVGYKTPELRKEGWFSAKID---TILNYIPARLTGMIMLTSG 206 >UniRef50_Q3ZX56 Cobalamin biosynthesis protein cobD n=5 Tax=Dehalococcoides RepID=COBD_DEHSC Length = 308 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 63/178 (35%), Gaps = 9/178 (5%) Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 + LL LQG+ ++ ++V ++ +C +R + D A+A Sbjct: 66 VPVYFLLDWLQGIN-SIVYIIVSAILFKMCFTVTGLRKA-ALLIKRLLEKDDIAQARFEL 123 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 + + +++ I ++APLF+ ++ G G + + + Sbjct: 124 RSLVSRDTSKLPQPKLVAAAVESVAESIGDG-FVAPLFFFLIFGVPGVMAYRVVSTFDSM 182 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALP--AWFASLGD 227 + +Y L VL+++P RL+ + + + P AW D Sbjct: 183 VGYRGKY----EYLGKFAARFDDVLNFIPARLSALCILVASFFGRYSPAGAWRIMWRD 236 >UniRef50_Q12UB2 Adenosylcobinamide-phosphate synthase n=4 Tax=Methanosarcinaceae RepID=Q12UB2_METBU Length = 331 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 64/194 (32%), Gaps = 10/194 (5%) Query: 28 LEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKV 87 L FF++ + +T G+ + + F A +L + + ++ L+ K Sbjct: 42 LIGFFKKKVPATHKKTYGVVFALIVILFAASIAYVVLLIANLSFIPEFVVLLIEAYFLKS 101 Query: 88 RLHYHAYLTAAS-------RNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWIN 140 L AA + D + + + + + ++ Sbjct: 102 TFAIRRLLEAAMEVYGELVKGDLVSARKKLS-MYVSRDTSQLTEGQVSSSVIETCSENFV 160 Query: 141 FRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVP 200 L+PLF+ ++ G +G + + + + + + VL+W+P Sbjct: 161 DGI-LSPLFYYVIFGPYGLIGAYIFKAVSTLDSMVGYMNEKYREIGYFSAKTDDVLNWIP 219 Query: 201 VRLAGVVYALIGHG 214 R+ V + + G Sbjct: 220 ARICVV-FIMAGSF 232 >UniRef50_B0K304 Cobalamin biosynthesis protein CobD n=7 Tax=Thermoanaerobacter RepID=B0K304_THEPX Length = 313 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 61/185 (32%), Gaps = 7/185 (3%) Query: 24 LDHRLEAFFRRVKHFSLGR--TLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLC 81 L+ L + + + + G+T+ +L + G++ +LI C Sbjct: 33 LESILRKYAKSNRALKIAGFILCGLTVTLAFAATYVLLYIAGLIHPYLKYAFDVLIIYTC 92 Query: 82 IGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINF 141 + + A ++ D + + + E ++ I+ Sbjct: 93 LATKDLGKAAGRVYEALAKGDIVEARRRLSYI-VSRDIDRLDVENISRGAIETVAENISD 151 Query: 142 RFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPV 201 +AP+F+ +GG V + L + + + L + +L+++P Sbjct: 152 GI-IAPMFYAFIGGAPLAVFYKAASTLDSMVGYG---NEKYLDLGFASAKLDDILNFIPA 207 Query: 202 RLAGV 206 R+ G Sbjct: 208 RITGF 212 >UniRef50_Q6ALU7 Cobalamin biosynthesis protein cobD n=1 Tax=Desulfotalea psychrophila RepID=COBD_DESPS Length = 330 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 23/233 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQ---------LDHRLEAFFRRVKHFSLGRTLGM--TII 49 M LL +I + + ++ + + RV L + + Sbjct: 1 MFSIKILLAIILDLFLGDPSCYPHPVRCIGLAINRWEKFYRPRVAQPFWAGVLTVCSVLT 60 Query: 50 AMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 + +T + L + + T +L+ + ++ A A + + + Sbjct: 61 LVILTLAVFFTLLAIFPPIVTDFAAVLLLYTTVAIKDLKKESMAVYRALIQGEDLPKTRK 120 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGP---------- 159 + ++ + +APLFW + + P Sbjct: 121 LLARIVGRDTENLDRPAIIRATVETVGENLADGI-IAPLFWAVALSIFAPLLGVKAIVLA 179 Query: 160 -VTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 V M Y + L + + +W+P R + I Sbjct: 180 SVGAMSYKAINTMDSMLGYKNERYILFGRAAARLDDWANWLPARCTALGIVAI 232 >UniRef50_Q87D61 Transmembrane protein n=21 Tax=Bacteria RepID=Q87D61_XYLFT Length = 314 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 21/260 (8%) Query: 1 MTLFTTLLVLIFE-----RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF 55 +T+ ++ L ++ L L R + + L +T +A+ Sbjct: 20 ITVIAVIVALALGHLIPVQVAALRSFDWFGRWLAWIGRLPQTYDLWQTSYGLWLALAPLL 79 Query: 56 LLLRAL----QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 + L GV + +LL + + G + A + A ND+ AR Sbjct: 80 FGVMMLQWWLDGVWHGLFSLLFGVAVVSWTWGPRDLDRDVEAVIDA---NDASARHLAVK 136 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 +L G + NAL R +LA LFW ++ G +G V A A Sbjct: 137 KLQAAGGSLYEDIPSLVEAVVLNAL-----RRWLALLFWFLLLGPFGAVLYRLTAL--AV 189 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS 231 + L+ Y +P +R G L +++W +L + AL+G+ + AW + G+ Sbjct: 190 ESRLSAYLSPANRR--GASRFLSMMEWPVAQLMALSMALVGNFDTVFRAWREAGGNRFNF 247 Query: 232 QYQVLTRLAQFSLAREPHVD 251 L +A+ S+ E + Sbjct: 248 GLAFLGDVARASVRGEVREE 267 >UniRef50_A8MIW5 Cobalamin biosynthesis protein CobD n=3 Tax=Clostridia RepID=A8MIW5_ALKOO Length = 316 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 6/195 (3%) Query: 22 WQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA--LQGVLFNVPTLLVWLLIGL 79 W + + R + +G L + FL + G++ + + + + Sbjct: 34 WIISKYEKIIRRSGINLKIGGFLLLGFSMGTTLFLATAIKNIVGLIHPMVSFIFTTYLLY 93 Query: 80 LCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWI 139 C+ A + L A D L DE +R + + Sbjct: 94 TCLAAKCLDLEARKVYEAVYEKDIEKGRKRLSYLVGRDTSNLTMDE--IIRGVIETVAEN 151 Query: 140 NFRFYLAPLFWLIVGGTWG--PVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLD 197 LAPLF+++VG +G +GY + + Q P+ + + +++ Sbjct: 152 TIDGVLAPLFYMMVGMYFGYPLEFALGYKVINTLDSMVGYVQEPYREIGYASAKLDDIVN 211 Query: 198 WVPVRLAGVVYALIG 212 ++P R+ ++ G Sbjct: 212 YIPARIGSILMVFAG 226 >UniRef50_Q97CS1 Probable cobalamin biosynthesis protein cobD n=2 Tax=Thermoplasma RepID=COBD_THEVO Length = 304 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 6/180 (3%) Query: 28 LEAFFRRVK-HFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGK 86 +E +FR+ F G + +I + L V ++V ++I Sbjct: 35 IEGYFRKFDNRFRAGILFSIAVIVLTAIPYFLAVYLSSFILVVYVVVSMVILKTTFSITS 94 Query: 87 VRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLA 146 + H + + + + + + +++ + Y+ Sbjct: 95 MGEHIKLITDSLKKGNIMEARMHLS-MIVRRDTSRLNENEISSAAIESIAEGLVDG-YIT 152 Query: 147 PLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 PLF+ + G G L + + R R + +D V+ +++P R++ Sbjct: 153 PLFFFVFFGLPGAFIARIINTLDSMYGYKDRKNFEFGRFSAFMDTVI---NYIPARISWF 209 >UniRef50_A6UUW7 Probable cobalamin biosynthesis protein cobD n=9 Tax=Methanococcales RepID=COBD_META3 Length = 311 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 82/247 (33%), Gaps = 22/247 (8%) Query: 3 LFTTLLVLIFERLFKL--GEHWQ------LDHRLEAFFRRVKH----FSLGRTLGMTIIA 50 + ++ IF L + W + L++ + K+ F T+ + I Sbjct: 8 FLSIIIDRIFGELPEKIHPTVWIGNIISFFEKILKSTHSKNKYKDFIFGTLTTISVLFIV 67 Query: 51 MGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMA 110 G + + + + +V+ + IG + L D + Sbjct: 68 FGAIYGVEILINNIQNIYIKYIVYSFLISTTIGYKSLLQFSKTPLNHIKNKDIESAKKSV 127 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 + + + +++A I +APLF+ I G G + A Sbjct: 128 QCI-VSRNTDKLDTKHILSASIESASENITDSI-IAPLFYAIFFGLEGAFIYRAINTMDA 185 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASL 225 + + + +L + +D + +++P R++G++ L G+ +KAL + Sbjct: 186 MLGYRNKKYEYYGKLPAILD---DIANFIPSRISGILLVLFAPLYGGNIKKALNGFIKEG 242 Query: 226 GDFHTSQ 232 + Sbjct: 243 HKTPSPN 249 >UniRef50_A6GTD6 Adenosylcobinamide-phosphate synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GTD6_9BURK Length = 331 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 82/266 (30%), Gaps = 29/266 (10%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVK-----HFSLGRTLGMTIIAMGVTF 55 M+ L+ ++ E G + ++ F + ++ + G T ++ M + Sbjct: 1 MSYLALLIAVVCETFLPDGLFTRARDWVDRFNQELEINLEALGAPGYTHLQWLVPMLIWI 60 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTA---ASRNDSHARATMAGE 112 L + L VL+ + L L L + + R + A ++ D + Sbjct: 61 LGVYFLYQVLWTISPLAAGFLSVFLLLYGLRFRHFAVVFTNAQLFLNQGDFFRARELLLT 120 Query: 113 LTMIHGVPAGCDEREYLRELQN--ALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 + R R Y + FW +V GP+ L+ Y Sbjct: 121 WMKEYDGSEPVVHRPGELVFHAIYHGTERALRQYFSLFFWFLVL--PGPMGLVVYMMAHW 178 Query: 171 WQYWLARY---QTPHHRLQSGIDA--------------VLHVLDWVPVRLAGVVYALIGH 213 Q H + +A VL ++W+P RL + L+ Sbjct: 179 SVIRERDVWQAQAFAHERPTMQEAWESNKLKAAISPRFVLFAMEWLPARLLALTVGLVAQ 238 Query: 214 GEKALPAWFASLGDFHTSQYQVLTRL 239 + A AW + S LT + Sbjct: 239 LDDAALAWRTAKNHSRFSNRAPLTAV 264 >UniRef50_Q1GDE9 Cobalamin biosynthesis protein cobD n=19 Tax=Rhodobacterales RepID=COBD_SILST Length = 303 Score = 50.5 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 9/185 (4%) Query: 27 RLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGK 86 ++A R+ + G+ +A+ V LL G + + LV +LI + I Sbjct: 37 LVQALDDRLNEGDGRQVKGVIAVAVLVFVGLLL---GWILSWFGSLVSVLIAAILIAQRS 93 Query: 87 VRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLA 146 + H A + +ND A A + + + +++ + +A Sbjct: 94 LIDHVRA-VATGLQNDLDA-GRSAVAMIVSRDTATMTGPQIARSAIESGAENFSDG-VIA 150 Query: 147 PLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 P FW +V G G + + + + +D VL+ +P RL+ + Sbjct: 151 PAFWFLVAGLPGLLIYKLINTADSMIGYRTEAYEDFGWAAARLD---DVLNILPARLSAL 207 Query: 207 VYALI 211 + AL+ Sbjct: 208 LIALV 212 >UniRef50_B2A0G4 Cobalamin biosynthesis protein CobD n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A0G4_NATTJ Length = 324 Score = 50.5 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 17/235 (7%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ 62 L L+ ++E++ + W + LE + +TII +GVTF L L Sbjct: 33 LIALLINFLWEKIVTISTSWGFNFLLEG--NNFSGLAKFAGFLITIIVVGVTFTLSYYLA 90 Query: 63 GVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAG 122 + ++ +L+ + + H L S D ++ V Sbjct: 91 SMH-----FIIDILLIYFALSYKSLVEHLARVLCPLSHGDLIKAREELSKIVG-RDVDYL 144 Query: 123 CDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPH 182 + ++ + + +APLF+ +GG +M Y + + P+ Sbjct: 145 EEAEIARGGIETSAESLCDGI-IAPLFFAFIGGAP---LVMSYKAVNTLDSMIGYNFYPY 200 Query: 183 HRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFHTSQ 232 L + VL+ +P RL V + + K L + Sbjct: 201 KDLGFASAKLDDVLNLIPARLTAVFILITSLLTKKNFVKGLQVMRHDASKHPSPN 255 >UniRef50_A0LJ23 Adenosylcobinamide-phosphate synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ23_SYNFM Length = 322 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 76/220 (34%), Gaps = 10/220 (4%) Query: 31 FFRRVKHFSLGRTLGMTIIAMGVTFL--LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVR 88 F L R G+ A+ VT + VL ++P L + L R Sbjct: 42 FHDAEASPLLQRLAGICFWALVVTLVGTATMLFVSVLTHLPPYLEHAGVVWLAYTTLATR 101 Query: 89 LHYH--AYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLA 146 + +++ A R++ A + A +ER+ +R L + +A Sbjct: 102 SLHKESSHVARALRDNDIPLARECLGRLVSRDT-AHLEERDIVRALVETVSESVSDGIVA 160 Query: 147 PLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 PLF+L VGG G + + + + ++ + D V +W+P RL+ Sbjct: 161 PLFYLAVGGPLGGMIYKAVSTMDSMVGYMNDRYRYFGWFAARAD---DVANWIPARLS-- 215 Query: 207 VYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 L+G W + ++ + A F A Sbjct: 216 GVLLVGAAASLGLDWRGAWRIMRRDARKMKSPNAGFPEAA 255 >UniRef50_A9KMP3 Cobalamin biosynthesis protein CobD n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMP3_CLOPH Length = 339 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 63/179 (35%), Gaps = 7/179 (3%) Query: 33 RRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVR-LHY 91 +R + + + I G+ +L + G++ + LLV ++ + +R Sbjct: 50 KRGELVAGAVLCFIVISISGLIPFVLLYIAGIIHPMVRLLVETVMCYQILATKSLRVESM 109 Query: 92 HAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL 151 Y + RA + + + +E ++ + +AP+ +L Sbjct: 110 KVYREL--EKEDIVRARYQLSMIVGRDTDSLTEEGIIKAAVETVAENTSDGI-IAPMLYL 166 Query: 152 IVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYAL 210 +G GP+ Y + +A + + V +++P R+A ++ + Sbjct: 167 AIG---GPILGFIYKAINTMDSMVAYKNERYLYFGRVAARLDDVANFIPSRIAALLMII 222 >UniRef50_B5JDR8 Cobalamin biosynthesis protein CobD n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JDR8_9BACT Length = 312 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 11/206 (5%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGM-TIIAMGVTFLLLRALQ 62 L +F ++ + L RV SLGR++ I+ +GV + L A Sbjct: 11 IGVALDFVFGDPRRMPHLVRFVGWLAVQGERVLVASLGRSVFAGLILWLGVIGVCLAAYA 70 Query: 63 GVLFNVPTLLVWL---LIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE--LTMIH 117 G+ + + + W L L+ R L A + + + Sbjct: 71 GLAWGLGLIGHWAKLGLDALVVFQCVAYRDLVKHVL-AVKTGLETSLSEGRRRVSWIVGR 129 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLAR 177 + +++ +N +APLFW GPV + + + Sbjct: 130 DTDRMEADDVCRAAIESGAENLNDA-VVAPLFW---AAFLGPVGALVFRVSNTMDAMVGH 185 Query: 178 YQTPHHRLQSGIDAVLHVLDWVPVRL 203 L + L++VP RL Sbjct: 186 RTERFELLGKVSARIDDGLNFVPARL 211 >UniRef50_O27460 Probable cobalamin biosynthesis protein cobD n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=COBD_METTH Length = 297 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 15/166 (9%) Query: 43 TLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIG--LLCIGAGKVRLHYHAYLTAASR 100 T+ + FL+ + + ++L+ +I +L A +V + A R Sbjct: 52 TIAVAAPFTLPLFLINHLQDPLNLIISSILLSAVISIRMLVTSALEVGGSLKEDIEDARR 111 Query: 101 NDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPV 160 + + + DE+ ++ I AP+F+ I+ G G Sbjct: 112 K---------LSMLVSRDTTSLSDEQITSAAIETLTENITDS-VTAPIFYFILLGLPGAF 161 Query: 161 TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 L A +L + +D +L+++P R+ GV Sbjct: 162 LYRVVNTLDAMVGYLDSENRDIGWFPARLD---DILNYIPSRITGV 204 >UniRef50_B2UXD7 Cobalamin biosynthesis protein CobD n=4 Tax=Clostridium RepID=B2UXD7_CLOBA Length = 316 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 12/216 (5%) Query: 23 QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCI 82 +L+ F++ T + I A + + + +L+ +I CI Sbjct: 33 KLEMLTRKLFKKCLKIGGLITWLIVISATFIVNFFILKIASGFNKYLGILLSGVIIYFCI 92 Query: 83 GA-GKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINF 141 A G V Y + RND A + + ++ ++ Sbjct: 93 SAKGLVTEGYKVI--SLVRNDDIKAARKQLSFIVGRDTENLEKQDIIRAVIETIAENMSD 150 Query: 142 RFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPV 201 +AP+F+ G G M Y + + + V +++P Sbjct: 151 GI-IAPIFY---AGLGGAPLAMAYKAVNTLDSMFGYKNDKYMEFGYFSAKLDDVFNYIPA 206 Query: 202 RLAGV-----VYALIGHGEKALPAWFASLGDFHTSQ 232 R+ G+ L +++L + + + Sbjct: 207 RITGILIILSSMILGYDFKRSLKIYKRDRYNHSSPN 242 >UniRef50_A6X053 Cobalamin biosynthesis protein cobD n=46 Tax=Rhizobiales RepID=COBD_OCHA4 Length = 327 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 5/192 (2%) Query: 15 LFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVW 74 LF W G L + ++ V L+ L + Sbjct: 34 LFGKAISWGEKRWNNRNLSASVLRRNGMWLTIGLVMACVVLGLVLELSLPFAGTAGAVAE 93 Query: 75 LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQN 134 +LI + + + H A + A R + A + + P DE R Sbjct: 94 ILIVTVLLAQKSLADHVQA-VALALREEGIEGGRRAVSMIVGRN-PEHLDEGGVSRAAIE 151 Query: 135 ALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLH 194 +L +AP FW +VGG G L Y + + + + Sbjct: 152 SLAENASDGIVAPAFWFLVGGLPG---LFAYKLINTADSMIGHLNDRYRDFGRFAAKLDD 208 Query: 195 VLDWVPVRLAGV 206 V +++P RL G+ Sbjct: 209 VANYIPARLTGL 220 >UniRef50_A5VM86 Adenosylcobinamide-phosphate synthase n=8 Tax=Lactobacillus reuteri RepID=A5VM86_LACRD Length = 319 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 69/216 (31%), Gaps = 18/216 (8%) Query: 2 TLFTTLLVLIFERLFKLGEHWQ---------LDHRLEAFFRRVKHFSLGRTLGMTIIAMG 52 L +L IF+ L W + + + F R + G + Sbjct: 3 ILIMVILAFIFDFLLGDPHSWPHPVKAMGHLIAYLTKKFNRSNYSTKRKKWFGALTWLIT 62 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIG----LLCIGAGKVRLHYHAYLTAASRNDSHARAT 108 V L + F +++++G C+ ++ + + + +N+ + Sbjct: 63 VGGSGLITYILMRFAAINYYLYMIVGTYLCYTCLSMRQLAIEAEKIMKSLQQNNLNKARQ 122 Query: 109 MAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFL 168 G + + E ++ + +APLF+L++G GPV + Y + Sbjct: 123 QVG-MIVGRDTNQLSAEEVTKATIETVAENTSDG-VIAPLFFLVIG---GPVLGIMYKAI 177 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLA 204 + + + ++VP R+ Sbjct: 178 NTLDSMIGYQNEKFRAFGEVSARIDDIANYVPARIT 213 >UniRef50_C4RPJ0 Cobalamin biosynthesis protein cobD (Fragment) n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RPJ0_9ACTO Length = 332 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 72/244 (29%), Gaps = 28/244 (11%) Query: 6 TLLVLIFERLFKLGEHWQ----LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRAL 61 + + L W A RRV + R G T A+ V +L + Sbjct: 75 LVAGYALDSLLGDPRRWHPVAGFGRAAGALERRV--YRPDRAAGTTFTALAVGVPVLVGV 132 Query: 62 QGVL----FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 + V ++ +G +R A D A G L Sbjct: 133 AATVATRRRPVGRAVLMAAATWTVLGGRTLRHEAKMMGRALRGGDLPAARRRLGHLCGRD 192 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY---- 173 P+ DE E R ++ +APL W V G G + L A Sbjct: 193 --PSTLDEPELARATVESVAENTSDAVVAPLLWGAVAGLPGLLGYRAANTLDAMVGHRSP 250 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASLGDF 228 AR+ TP + +L+ P RL G++ + G +A W D Sbjct: 251 RYARFGTPS-------ARLDDLLNLAPSRLTGLLTIAVAPAAHGDRGRAWRVWLRDRNDH 303 Query: 229 HTSQ 232 + Sbjct: 304 PSPN 307 >UniRef50_Q5JI24 Probable cobalamin biosynthesis protein cobD n=9 Tax=Euryarchaeota RepID=COBD_PYRKO Length = 294 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 10/187 (5%) Query: 26 HRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAG 85 + RR L ++ + FLL F + L L Sbjct: 36 FIDSRYKRRSPVLDFTAGLLTALVVITFAFLLSIVPFYAPFPLNYFLAAYL-LKSSFAIK 94 Query: 86 KVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYL 145 + H +T D A + + + +++ +N + Sbjct: 95 SLHEHVSRTIT-----DDIEEKRRAVSMIVSRNTKVLDEAHLNSAAIESLAENLNDS-VV 148 Query: 146 APLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAG 205 APLF+ ++ G G V L A + + + +D L+++P RL Sbjct: 149 APLFYFLLFGLQGAVIYRAVNTLDAMLGYRNERYEFFGKFSARLD---DALNFIPARLTV 205 Query: 206 VVYALIG 212 ++Y +G Sbjct: 206 LLYLPLG 212 >UniRef50_C9RHK7 Cobalamin biosynthesis protein CobD n=3 Tax=Methanocaldococcus RepID=C9RHK7_METVM Length = 314 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 11/206 (5%) Query: 33 RRVKHFSLGRTLGM-TIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHY 91 + + F G + + TI +G+T + L +L + + ++ IG + Sbjct: 48 NKTRDFIFGTLIALITITTVGITSFFIEKLIFLLPTPINYITYGIVLSTAIGYKSLFDFC 107 Query: 92 HAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL 151 + + A + + +E +++ I A LF+ Sbjct: 108 KRPVNLLKEGNLEKARE-AVQHVVSRDTSQLDEEHVLSASIESLSENITDSIIGA-LFYA 165 Query: 152 IVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 + G G L A + + + V++++P RL+G++ + Sbjct: 166 TLFGMPGAFVYRAINTLDA---MMGYKNEKYLWYGKFSARLDDVVNFIPSRLSGILLIVT 222 Query: 212 -----GHGEKALPAWFASLGDFHTSQ 232 G + A+ + + Sbjct: 223 SPLYGGSVKGAIYGFLREANKVSSPN 248 >UniRef50_Q15YJ2 Adenosylcobinamide-phosphate synthase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YJ2_PSEA6 Length = 298 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 71/206 (34%), Gaps = 7/206 (3%) Query: 42 RTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRN 101 R G + ++ + + + L ++ L+ + V +A Sbjct: 42 RISGTLAPLVLISPVAVILAIFINMAEFPLFFDAMLLLVALQYQHVMTRGKKVYSALLSG 101 Query: 102 DSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVT 161 A + ++ +++ L + ++ + +L+ +GPVT Sbjct: 102 -KKTLARQTLKPMVLRETELLSQVGLVKATIESMTLRFHQQYLCTAMLFLL----FGPVT 156 Query: 162 LMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAW 221 + Y + + + T L V+ WVP+RL ++ L+G A+ AW Sbjct: 157 ALCYRLVYEFSHCWNTKLTQFTYFGQPSAKTLLVVQWVPLRLTSFLFTLMGSVTSAISAW 216 Query: 222 FASLGDFHTSQYQVLTRLAQFSLARE 247 +S +QVL L +L E Sbjct: 217 R--ALPRSSSAHQVLLALHGGALGIE 240 >UniRef50_Q73JM8 Cobalamin biosynthesis protein CobD n=1 Tax=Treponema denticola RepID=Q73JM8_TREDE Length = 357 Score = 47.0 bits (110), Expect = 6e-04, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 16/221 (7%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF------- 55 +L I + + L + + F G+ + Sbjct: 22 FCAIILDFILGDPYSFPHPVKFIGSLIKKEKVLARFCFSSPRGLKFAGFLIVIFNVSLSF 81 Query: 56 -LLLRALQGVL-FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L+ L+ + + + + + I C+ A ++ TA + R +A + Sbjct: 82 CLVFFFLKLLYPYKILYFVFSVWISYTCLAARCLQKESIKVFTALQMSLEEGRKQIANIV 141 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 DE+ R + +APLF++++ GP + Y + Sbjct: 142 GRDA---EPLDEKGVSRACVETIAENTSDGVIAPLFFMML---LGPAGGIAYKAVNTMDS 195 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG 214 L + L V +++++P RL+ + L G Sbjct: 196 MLGYKNEKYADLGFFPAKVDDIVNYIPARLSAL-LILAGSF 235 >UniRef50_C4V0Y6 Cobalamin biosynthesis protein CbiB n=2 Tax=Selenomonas RepID=C4V0Y6_9FIRM Length = 319 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 67/193 (34%), Gaps = 7/193 (3%) Query: 22 WQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVP--TLLVWLLIGL 79 W H ++ + F++G L + ++++ L V ++ +++ Sbjct: 38 WLDRHLYPSYGGDGRKFAMGTLLVLIVLSISYAAAEGLILAARHLPVAWGADVLEIILLY 97 Query: 80 LCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWI 139 CI + H ++ G + A DE + R + Sbjct: 98 FCISPRSLAKAGHEIYALLDGDNLVGARVRVGYIVGRD--TAELDEEDAARAAIETVAEN 155 Query: 140 NFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWV 199 ++PLF+ ++GG V + + + R+ + +D VL++V Sbjct: 156 TVDGVISPLFFFLLGGAPLAVLYRAANTMDSMLGYKNDRYLYFGRMAARVD---DVLNYV 212 Query: 200 PVRLAGVVYALIG 212 P R+ +++ + Sbjct: 213 PARITSILFVMAA 225 >UniRef50_Q15WT1 Adenosylcobinamide-phosphate synthase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15WT1_PSEA6 Length = 351 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 53/186 (28%), Gaps = 15/186 (8%) Query: 36 KHFSLGRTLGMTIIAMGVTFLLL--------RALQGVLFNVPTLLVWLLIGLLCIGAGKV 87 F + ++ + +T +L + VL L+ I L IG + Sbjct: 62 TRFKGALCWLILVLPLPMTLWVLNYGVMQYAMSNDAVLLAGCMFLLNASILYLAIGMQSL 121 Query: 88 RLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAP 147 + H + D A+A + +++ L +A Sbjct: 122 KEHAMQIYQPLAEGDL-AQARHFTSYMVSRDTTELTPNNMSRAAVESVLEN-GHDGVIAS 179 Query: 148 LFWLIVGGTWGPVTLMGYAFLRA-WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 LF+ +GG V L A W Y R+ L W+ + Sbjct: 180 LFYFAIGGAPLAVLHRLSNTLDAMWGYKSPRFLHFGWWAA----RTDDHLGWLSAYCTSL 235 Query: 207 VYALIG 212 +Y L Sbjct: 236 LYVLAA 241 >UniRef50_B7ATE5 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ATE5_9BACE Length = 326 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 8/192 (4%) Query: 33 RRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIG-LLCIGAGKVRLHY 91 R + + G +I + F L+ + N+ V + I A ++ Sbjct: 52 SRKRKIARGALTAAAVIVISTAFPLIIEIISFNINIWLFFVAETVMDYFVIAAKSLKKES 111 Query: 92 HAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL 151 A D+ + D+ ++ + + +AP+F+ Sbjct: 112 MLVCAAMEAGDTEGARRAVSMIVGRD--TKVLDKEGIIKAAVETVAENSSDGVIAPVFYT 169 Query: 152 IVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 + G G Y + L + + VL+++P RL+ + Sbjct: 170 ALCGAAG---GFFYKSVNTMDSMLGYINDRYEAFGKAAARLDDVLNYIPSRLSALFIIAA 226 Query: 212 GHGE--KALPAW 221 A AW Sbjct: 227 AKFTGLNAAGAW 238 >UniRef50_C1TM10 Cobalamin biosynthesis protein CobD n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM10_9BACT Length = 303 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 10/171 (5%) Query: 48 IIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLL--CIGAGKVRLHYHAYLTAASRNDSHA 105 +I + L++ + V + + + L + + A D Sbjct: 53 LIVLSGISLVMVVVSAVYSLPLVFSLPISVWFLKGTFSLSGLLEAGGSIDRALKSGDLSR 112 Query: 106 RATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGY 165 + G + +++ APLF+ + G G + Y Sbjct: 113 GRRLLGYHLVSRETSKLSSSEVAGAAIESLAENFGDGLV-APLFFFALFGLPGALV---Y 168 Query: 166 AFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV----VYALIG 212 F+ L + +L+W+P RLA + A++G Sbjct: 169 RFVNTCDSMLGYRGGDFESGGKFAARLDDLLNWIPARLASLLILAGAAIVG 219 >UniRef50_B1HXM0 Cobalamin biosynthesis protein n=2 Tax=Bacillaceae RepID=B1HXM0_LYSSC Length = 318 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 11/197 (5%) Query: 19 GEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNV-PTLLVWLLI 77 W + +++ + GM + V + +L + +L+ +L+ Sbjct: 27 PVRW-IGKLIQSQTALWNRGKWRKLRGMVMALAVVGTTMFVVTLILLLSYQVSLIFGILV 85 Query: 78 GLLCIGAGKVRLHYH----AYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQ 133 L IG G + A + D + G DE +R Sbjct: 86 EGLLIGIGLAQRSLKEAALAVYEPLVKGDFAEARVKLSWIVGRDTEKLGEDE--IVRGFV 143 Query: 134 NALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVL 193 + APLF+ V G G L + + + +D Sbjct: 144 ETVSENTSDGVTAPLFYAFVFGAIGLWGYKAVNTLDSMVGYQYETFKDFGMFSAKLD--- 200 Query: 194 HVLDWVPVRLAGVVYAL 210 VL+++P R+ G + L Sbjct: 201 DVLNFIPSRITGFLMVL 217 >UniRef50_C9KJ54 Cobalamin biosynthesis protein CobD n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJ54_9FIRM Length = 316 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 60/193 (31%), Gaps = 12/193 (6%) Query: 27 RLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLF-------NVPTLLVWLLIGL 79 LE + R + + I+ + V F+ G+++ T+ V L+ Sbjct: 33 FLERIYYREEDSDQKKFFCGAILVLLVLFITYDVAAGIIYFSYSIPWEWGTMAVEALLLA 92 Query: 80 LCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWI 139 I + N+ G + + ++ Sbjct: 93 FTISPKSLAKAGRGIYALLLTNELDKARKAVG-WIVGRDTAKLDESEVARATVETIAENT 151 Query: 140 NFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWV 199 +APLF+ ++GG V + + + + + +D VL+++ Sbjct: 152 VDG-VIAPLFFFMLGGVPLAVLYRAANTMDSMIGYKNEKYLYFGKAAAKLD---DVLNYI 207 Query: 200 PVRLAGVVYALIG 212 P R+ V++ + Sbjct: 208 PARITAVLFIIAA 220 >UniRef50_Q3A7A1 Adenosylcobinamide-phosphate synthase n=2 Tax=Desulfuromonadales RepID=Q3A7A1_PELCD Length = 314 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 19/217 (8%) Query: 1 MTL-FTTLLVLIFERLFKLGEHWQLD---------HRLEAFFRRVKHFSLGRTLGMTIIA 50 MTL L + + L+ RR+ + L + I+ Sbjct: 1 MTLEMQILAAIGLDLLWGDPRRLPHPVKGMGQLAMALEAPLRRRIANPRLAGIVTAMIVV 60 Query: 51 MGVTFLLLRALQGVLFNVPTLL---VWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 + L + + + +L+ CI A + H L A + Sbjct: 61 TATAAISALLLSA-AYRLHPWAGDALSILLLSTCIAARDLAAHAWQVLKALRLGNLELAR 119 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 G L P D +R ++ APLFW ++ G G + + Sbjct: 120 QRVGWLVGRDTAP--LDRSGVVRAAVESVAENTVDGVTAPLFWAVLLGPIGAMAYKAAST 177 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLA 204 L + + + + +D VL+++P RL Sbjct: 178 LDSTFGYKNERYLQYGWASARLD---DVLNYLPARLT 211 >UniRef50_Q3ILJ8 Putative cobalamin biosynthesis protein n=2 Tax=Alteromonadales RepID=Q3ILJ8_PSEHT Length = 314 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 71/215 (33%), Gaps = 13/215 (6%) Query: 3 LFTTLLVLIFERLFKLGEHWQ--------LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVT 54 ++ L+ ER L + + ++ + S + ++ Sbjct: 12 FIVFIMALLAERFLPLVSWYHPNTALTAIFSAIGKRIYKVAEPNSYQYLAATLASTLILS 71 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 +L+ + + F L+ LI LC+ + + +N A + L Sbjct: 72 VVLIIIVLLLEFAFYPELLAGLILYLCLESKAIDKKALRIAKLTKQNQKSAARELLKPLV 131 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 ++ L +L+ R+Y +F +V GP+ + Y L + Sbjct: 132 ARDVTK--LSGAGIIKALIESLILRTARYYFVVIFVFLV---LGPIAALAYRLLTLIEQA 186 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYA 209 P+ + L +++++P+RL + A Sbjct: 187 WRSNIKPNSPFLKPLKITLFIIEFIPMRLLALTIA 221 >UniRef50_A1AMC9 Cobalamin biosynthesis protein cobD n=13 Tax=Bacteria RepID=COBD_PELPD Length = 323 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 10/180 (5%) Query: 38 FSLGRTLGMTIIAMGVT-----FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYH 92 + R G+ ++A+ VT L+ L + L+V L+ C+ A ++ Sbjct: 47 MANERIAGVLLLALTVTSAASVTWLMVWGSARLHALAGLMVAALLSSTCLAARSLQRESC 106 Query: 93 AYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLI 152 A D + + V DE E R L + +APLFWL Sbjct: 107 LVADALDAGDIASARVKLSYIVGRDTVD--LDEEEIWRALIETVAENTTDGIIAPLFWLA 164 Query: 153 VGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 +G GPV M + + + + RL + +++++P RL ++ ++ Sbjct: 165 LG---GPVAGMAFKAVSTLDSMVGYKNERYLRLGWASARMDDLVNYIPARLTALLMVMVA 221 >UniRef50_Q52683 Cobalamin biosynthesis protein cobD n=6 Tax=Alphaproteobacteria RepID=COBD_RHOCA Length = 314 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 60/196 (30%), Gaps = 10/196 (5%) Query: 15 LFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVW 74 + L + + RR++ + + T + + + L + +L W Sbjct: 34 IGALIARLEKGWNFKGRLRRLRGVLVALAVIGTTVVIALAVQLWLPAGWPGVLIGGILAW 93 Query: 75 LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQN 134 + L + H A D + P+ D+ R Sbjct: 94 PFVALRSM-----HDHVAAVAKPLIAGDLPGARQAVSMIVGRD--PSQLDQPGVARAALE 146 Query: 135 ALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLH 194 +L + +APLFW V G G L + + ID Sbjct: 147 SLAENSSDGIVAPLFWGCVAGLPGIAGYKAINTLDSMIGHRTDRYEEFGWASARID---D 203 Query: 195 VLDWVPVRLAGVVYAL 210 +++ +P RL G+ +AL Sbjct: 204 LVNLIPARLTGLFFAL 219 >UniRef50_O28933 Probable cobalamin biosynthesis protein cobD n=1 Tax=Archaeoglobus fulgidus RepID=COBD_ARCFU Length = 290 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 16/177 (9%) Query: 45 GMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSH 104 G + +TF L+ +L + F P +W + L + + + A Sbjct: 53 GAFCCLIVITFALILSL--LPFPYPLNFLWAVYLLFS------SISVKSMVNHARVCVES 104 Query: 105 ARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMG 164 A ++ + +E+ +++ +APLF+ + G G V Sbjct: 105 GVDRKAVQMIVSRNTEELSEEQLCSAVIESVAENYVDG-VVAPLFYFSIFGVAGAVVYRA 163 Query: 165 YAFLRA-WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI--GHGEKAL 218 A Y RY+ + +L+++P RL+ + + L+ G L Sbjct: 164 VNTCDAMVGYRKGRYEAFG----KFAARLDDILNYIPARLSLLFFELLKRGAFSYGL 216 >UniRef50_B2RK82 Cobalamin biosynthesis protein n=29 Tax=Bacteria RepID=B2RK82_PORG3 Length = 340 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 7/171 (4%) Query: 62 QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPA 121 V F V +L++ + I C+ + A R+ R + + A Sbjct: 97 IAVAFAVASLILAIGI-FFCLAGTTLIREVRMVFEAVDRSLEEGRKQVTR--IVGRDTAA 153 Query: 122 GCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTP 181 + L+ ++ +AP+FW + G G + L + + Sbjct: 154 LSAQEVRTAALETLSENLSDG-VVAPMFWYMWLGLPGMMAYKMINTLDSMIGYKTARYFL 212 Query: 182 HHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 R+ + ID V +++P RL + L+ + Sbjct: 213 FGRIAAKID---DVANYIPARLTAWLMILVSGKLHLFSFVRRYGRQHASPN 260 >UniRef50_A7HMT4 Cobalamin biosynthesis protein CobD n=4 Tax=Thermotogaceae RepID=A7HMT4_FERNB Length = 294 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 56/216 (25%), Gaps = 26/216 (12%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ 62 L ++ L F + + + R+ +G+ L++ + Sbjct: 11 LLALIIDLFFGEF---PSVIHPVVYMGRVGKFFDNIYKSRSSKAVSFVLGMISLIVELII 67 Query: 63 GVLFNVP----------TLLVWLLIGLLCIGAGKVRLHYH-AYLTAASRNDSHARATMAG 111 ++ + I + H Y D Sbjct: 68 WGGLGYFLQSFSKRFTIAMIFEVCILKSTFSIRSLYEHVKRCYTN-----DVELLRKNVS 122 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA- 170 + + Y +++ I+ PLF+ ++ G G V A Sbjct: 123 -MIVSRDTSKLDKSHLYSAAVESLAENISDSI-TGPLFYYVLFGLPGAVVYRVVNTYDAL 180 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 + Y ARY +L+ VP RL + Sbjct: 181 FGYRNARY----EWFGKFPARFDDLLNLVPSRLTAL 212 >UniRef50_A4J805 Adenosylcobinamide-phosphate synthase n=2 Tax=Clostridiales RepID=A4J805_DESRM Length = 315 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 11/188 (5%) Query: 33 RRVKHFSLGRTLGMTIIAMGVTF------LLLRALQGVLFNVPTLLVWLLIGLLCIGAGK 86 R+ G LG ++ +GV +L L ++ L+V L + + Sbjct: 40 RKFAGGPTGLRLGGILLVLGVVTITFMGTWILIRLAEMIHPYLGLIVHLWLLSTTLAVKS 99 Query: 87 VRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLA 146 + H A +R D + L + + ++ ++ Sbjct: 100 LSQHAMAVAEPLARGDLNTA-RSKVALIVGRDTDKLNERGIARATVETVAENTVDGI-IS 157 Query: 147 PLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 PLF+ +GG M Y + + + L + + +++P RLAG Sbjct: 158 PLFYAFIGGAP---LAMVYKAINTMDSMIGHRDEKYLHLGWAAARLDDLANYLPARLAGF 214 Query: 207 VYALIGHG 214 +Y + Sbjct: 215 LYPWLAVF 222 >UniRef50_B8FH76 Cobalamin biosynthesis protein CobD n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH76_DESAA Length = 319 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 60/178 (33%), Gaps = 8/178 (4%) Query: 29 EAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLL---VWLLIGLLCIGAG 85 E FRR+ ++ T+ + + ++ + + L + ++I I Sbjct: 44 EPRFRRLPIPTVWAGALFTLCLVALVWISAWIVLAAGAAMHPWLGAGLEIIILYFSIAPR 103 Query: 86 KVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYL 145 + +A + D+ +A + + + ++ L Sbjct: 104 CLDKAAYAVEKPLRQGDAE-KARAELSMIVGRETKDLTPTQMSRAAVETVAENFVDG-VL 161 Query: 146 APLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRL 203 +PLFW+ VGG + + L + + + + +D V +++P RL Sbjct: 162 SPLFWIAVGGAPAAMAFKMASTLDSMVGYKNEQYILFGKASARLD---DVANFIPARL 216 >UniRef50_A7C0E6 Cobalamin biosynthesis protein CbiB n=1 Tax=Beggiatoa sp. PS RepID=A7C0E6_9GAMM Length = 305 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 15/234 (6%) Query: 1 MTLFTTLLVLIFERLF-----KLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF 55 M LL + ++ F K W + ++AF R ++ + + + VTF Sbjct: 1 MFFDIALLAYLIDKYFGEFPIKHPVVW-MGEFIQAFEARFYQDTILSGGLLVVGLLSVTF 59 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 L+ L + +P++L WL++ ++ G HA + D + A + + Sbjct: 60 LITSGLVYLASFLPSVLEWLILSVIA-STGIAMQMLHASVKQVLMADDPKK---ALSMLV 115 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 D Y L+ ++ +APLF+L++ G G L + + Sbjct: 116 SRDTQQMNDTEIYKTCLETWAENLSDG-VIAPLFYLMLFGLEGLALYKAINTLDSMVGYK 174 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFH 229 R+ + +D + +++P RL ++ L G++A AW D H Sbjct: 175 TPRYNRFGRIAAKLD---DIANYLPARLTALLIVLF-SGQQAKVAWKIVWRDGH 224 >UniRef50_C1SKG0 Cobalamin biosynthesis protein CobD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKG0_9BACT Length = 256 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 58/172 (33%), Gaps = 6/172 (3%) Query: 48 IIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 + + + ++ + +L +V LI I + H A S Sbjct: 1 MAMVVLATCIILGIAKLLGGFIYFMVSSLIMYFSISIKSMTDHAEAVFRPLSDGHIETAG 60 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 + + E +++ ++P+F+ + G G VT + Sbjct: 61 QKLA-MIVSRDTDGMDSEMIVRSCIESVSENFTDG-VVSPIFYSVFFGGVGAVTFKAVST 118 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALP 219 L + + R + D +L+++P RL+ ++ ++ G K +P Sbjct: 119 LDSMVGYRNERYELFGRASAKAD---DLLNFIPARLSVLIISVAG-FVKGVP 166 >UniRef50_B6BH68 Cobalamin biosynthesis protein CobD n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BH68_9PROT Length = 301 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 54/143 (37%), Gaps = 11/143 (7%) Query: 69 PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREY 128 +++ I + + + L + ++ + A+ + V + Y Sbjct: 78 VNIIISSFIASMFLAHRMLYDSVKDVLVSQNKQEVIAK-------LVSRDVEQMSESDIY 130 Query: 129 LRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSG 188 ++ ++ +APLF+L++ G G + + + + + ++ + Sbjct: 131 KASIETYAENLSDG-VIAPLFYLLLFGLPGIIIYKAINTMDSMVGYRNDKYENYGKVAAK 189 Query: 189 IDAVLHVLDWVPVRLAGVVYALI 211 +D + +++P R+ V+ L+ Sbjct: 190 LD---DIANYIPSRVTAVLIMLL 209 >UniRef50_C7N893 Cobalamin biosynthesis protein CobD n=4 Tax=Bacteria RepID=C7N893_SLAHD Length = 323 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 59/183 (32%), Gaps = 8/183 (4%) Query: 24 LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLC-- 81 L++ L F + + +T++ G++ L + L + + L+C Sbjct: 38 LENPLRRAFPKTDKGEFWAGVCLTVLVAGISTACAAGLIWACGLISGWLAFGVECLVCYQ 97 Query: 82 -IGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWIN 140 + +++ A A + + + ++ + Sbjct: 98 MLACKSLKVESMKVYDALVGGSLEDA-RHAVSMIVGRDTRNLDAQGITKATVETIAENAS 156 Query: 141 FRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVP 200 +APL ++ + GPV + Y + + + + + VL+++P Sbjct: 157 DG-VVAPLLYMALF---GPVGAVAYKSVNTMDSMVGYVNDRYRHFGTAAAKLDDVLNFLP 212 Query: 201 VRL 203 R+ Sbjct: 213 ARI 215 >UniRef50_UPI0001AEBF52 adenosylcobinamide-phosphate synthase n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBF52 Length = 315 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%) Query: 34 RVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHA 93 R +H+ G + ++A V + + + +I + + G R Y Sbjct: 57 RSQHYISGSLAALVLLAPLVVCVAILVYMAQY----PVFFEAIILVALLDYGYQRQQYKK 112 Query: 94 YLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRF-YLAPLFWLI 152 L + RN MA +T + + LW+ F + Y +F+ + Sbjct: 113 VLASVGRNKKSLAREMAQTITARQC---DSLSDIGIAKAAIESLWLKFLYLYCGVIFYFV 169 Query: 153 VGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 V G G + L +WQ+ + ++++L+ P + G+ L+ Sbjct: 170 VAGPIGALIYRL-LLLTSWQWHYRTPAMTFFAKP--VRKLVYLLNVPPAVIGGLATLLVS 226 Query: 213 HGEKAL 218 H K Sbjct: 227 HPIKGF 232 >UniRef50_A9GM39 Cobalamin biosynthesis protein cobD n=2 Tax=Bacteria RepID=COBD_SORC5 Length = 314 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 6/120 (5%) Query: 81 CIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWIN 140 +R + A D L P+ DE + ++ Sbjct: 93 TFALRALRDAAYGVRDALEAGDVTGARGALRSL--CSRDPSELDEPALVAASVESVAENA 150 Query: 141 FRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVP 200 ++APLF+ + G G + L A + RY L + L++VP Sbjct: 151 SDSFVAPLFYFALFGLPGALFYRAVNTLDAMVGYHGRY----EYLGKASARLDDALNFVP 206 >UniRef50_Q3ZWV9 Cobalamin biosynthesis protein n=3 Tax=Dehalococcoides RepID=Q3ZWV9_DEHSC Length = 318 Score = 44.7 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 15/200 (7%) Query: 42 RTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLL------CIGA-GKVRLHYHAY 94 L + +L L + +++++ L C ++ L Y Sbjct: 55 GMLASLFLIALFGWLSYWLL--AYLGGISFVLYIIAAFLLLKPTFCFKFNARMSLLVEKY 112 Query: 95 LTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG 154 L A + LT + + +L F +APLF+ ++ Sbjct: 113 LKGGDYRIESADKEIRYLLTTVEREKGDEFAPPMISSTIRSLSENASDFLVAPLFYFLIL 172 Query: 155 GTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG 214 G G V L Y L + +L+++P RL G+++ L Sbjct: 173 GVPGAVAYRVSNTLDGMLGHRGEY----EYLGKFAACLDDILNYIPARLTGLMFVLSAFV 228 Query: 215 E--KALPAWFASLGDFHTSQ 232 AW +L D ++ Sbjct: 229 SGLDGKNAWKMALRDQSKTE 248 >UniRef50_Q1Q2T8 Similar to cobalamin biosynthesis protein cbiB n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q2T8_9BACT Length = 328 Score = 44.7 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 50/163 (30%), Gaps = 8/163 (4%) Query: 68 VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 V ++ +I I + + ND +M + E+ Sbjct: 85 VCQVITGGIIVYFAISIKNLADEAKKVINMLRINDLKNARSMLSRIVG-RDTADLNREQI 143 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 ++ LAPLF+ +G GPV +M Y + + + +L Sbjct: 144 IRAAIETVAESCVDGI-LAPLFYCFIG---GPVAVMTYRAVNTLDSMVGYKNEKYIKLGW 199 Query: 188 GIDAVLHVLDWVPVRLAGVVYALIGHG--EKALPAWFASLGDF 228 + + +++P RL+ + + + + + Sbjct: 200 ASARLDDMANYIPARLSAL-FIPVASFLCGHGFQSSLRTAFQE 241 >UniRef50_A6TU69 Cobalamin biosynthesis protein CobD n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TU69_ALKMQ Length = 314 Score = 44.7 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 53/165 (32%), Gaps = 8/165 (4%) Query: 45 GMTIIAMGVTFLLLRALQGVLFNVPTLL---VWLLIGLLCIGAGKVRLHYHAYLTAASRN 101 + I + ++++L L + + + ++ V + + + + + A Sbjct: 53 FVAFIVIALSYILTSRLIYIGYRIHPIIGGSVSIFLAYTVLATKSLDVETRKVYQALKEG 112 Query: 102 DSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVT 161 + L + + ++ I+ AP+F+L +GG Sbjct: 113 NLSLARRNLSYL-VSRQTDELEEIEIARGAVETIAENISDGIV-APMFYLFIGGVP---L 167 Query: 162 LMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 M Y + + + V V ++VP RLA + Sbjct: 168 AMAYKAVNTLDSMIGYRNEKYEYFGKVAARVDDVANYVPARLAVM 212 >UniRef50_Q97LH9 Cobalamin biosynthesis protein cobD n=21 Tax=Bacteria RepID=COBD_CLOAB Length = 315 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 10/189 (5%) Query: 28 LEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTL-----LVWLLIGLLCI 82 LE RR + I + V+ + +L V ++ + + Sbjct: 34 LEKLGRRFFKQDKWLLVFGGFIVIIVSSISFLIPFIILQGVKKFQVIYHVINIFFLWTVL 93 Query: 83 GAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFR 142 A + TA + D + G ++E +R + + Sbjct: 94 AAKSLHKEGKKVYTALEKKDIEDARLKLSYIVGRQ--TEGLSKKEIIRADVETIAENSSD 151 Query: 143 FYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVR 202 +APL + ++GG M Y + L + + + + +++P R Sbjct: 152 GIIAPLLFAMLGGAP---LAMMYKGINTMDSMLGYMNFKYRYIGFFPAKIDDLFNFIPAR 208 Query: 203 LAGVVYALI 211 + G++ L+ Sbjct: 209 VTGIIMCLV 217 >UniRef50_C0Z7H8 Cobalamin biosynthesis protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7H8_BREBN Length = 316 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 53/185 (28%), Gaps = 7/185 (3%) Query: 24 LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFN--VPTLLVWLLIGLLC 81 L+ + + + H L L +I G ++ L G F V ++ + Sbjct: 37 LEQVIRSLVKEESHLKLAGVLFPVVIVGGSYAVVWLILWGATFIHPVLAWILGAWLISTT 96 Query: 82 IGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINF 141 I + D A + + + ++ I Sbjct: 97 IATKGLADAGMEIARHLVAGDMEAARRSLS-MVVGRDTEQLDEPEVCRGAVETVAENIVD 155 Query: 142 RFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPV 201 +PL + +GG + L + + + ID VL+++P Sbjct: 156 AIV-SPLIFAAIGGAPLAMAYRAANTLDSMVGYKNEKYLNLGWASARID---DVLNYIPA 211 Query: 202 RLAGV 206 RL + Sbjct: 212 RLTAL 216 >UniRef50_Q180T1 Cobalamin biosynthesis protein n=9 Tax=Clostridium RepID=Q180T1_CLOD6 Length = 323 Score = 44.3 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 70/227 (30%), Gaps = 19/227 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLD--------HRLEAFFRRVKHFSLGRTLGMTIIAM- 51 M++ + + + + + + + + R+V G I+ + Sbjct: 1 MSILSIYIGYVTDLIVGDPYSFPHPVRFIGKLINFTQGIIRKVSKNDRQLKFGGFILWLI 60 Query: 52 --GVTFLLLRALQGVLF--NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 G+T+L A+ + + +++V I + ++ + ++ Sbjct: 61 TVGITYLTTYAIVKLFSFNILLSIVVNSFIIYTTLATKCLKDEALKIYNVLKTENIE-KS 119 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 + + + ++ +AP+F+ +GG M Y Sbjct: 120 RIQLSYIVGRDTTNLSEPEIIRATVETVAENTVDGI-IAPMFYAFIGGAP---LAMAYKA 175 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG 214 + + + + + + +++P R++ + IG Sbjct: 176 INTLDSTVGYKNKKYKDIGFASAKIDDIANYIPARISVI-LMTIGSF 221 >UniRef50_C9S015 Cobalamin biosynthesis protein CobD n=5 Tax=Bacillaceae RepID=C9S015_GEOSY Length = 324 Score = 44.3 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 8/190 (4%) Query: 22 WQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLC 81 W + RR K + + + + + + V V + + Sbjct: 36 WLDRRWNQGTKRRAKGAAAVAVVLAAVYGVSALVVYVGYALSVYVGVAIEAALIFTTIAT 95 Query: 82 IGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINF 141 + L A D + DE R + Sbjct: 96 KSLAEAAEDVRRPLEA---GDLPEARRALSMIVGRD--TERLDEAGITRACVETVAENTS 150 Query: 142 RFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPV 201 APLF+ +GG M Y + L + + L+++P Sbjct: 151 DGITAPLFYAALGGAP---LAMLYRAVNTCDSMLGYKNETYREFGWAAARLDDALNYIPA 207 Query: 202 RLAGVVYALI 211 R+ +V L+ Sbjct: 208 RMTALVMVLV 217 >UniRef50_C6BSX1 Cobalamin biosynthesis protein CobD n=2 Tax=Desulfovibrio RepID=C6BSX1_DESAD Length = 319 Score = 44.0 bits (102), Expect = 0.005, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 8/178 (4%) Query: 38 FSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTA 97 FS G + + + F ++ +F + L+ L + + A Sbjct: 46 FSTGMSRKIMGGVGVLVFAIVVWSVLKIFLAIPFVGVLIALYLAYAGLALGSLLSEHKNA 105 Query: 98 ASRND---SHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG 154 A+ D EL + V + ++ +N ++AP F+L+V Sbjct: 106 AAMLDSGRIEDARKAIAEL-VSRDVSELDENGLRKALAESTSENLNDG-FVAPFFYLVVT 163 Query: 155 GTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 GP + Y + VL ++P R+ G + G Sbjct: 164 ---GPAGMWVYKTISTMDSMWGYKNEEFKEFGYYAAKADDVLAFIPARITGFMMLAAG 218 >UniRef50_Q3AE10 Cobalamin biosynthesis protein CobD n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AE10_CARHZ Length = 319 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 38/314 (12%), Positives = 88/314 (28%), Gaps = 38/314 (12%) Query: 2 TLFTTLLVLIFERLFKLGEH---------WQLDHRLEAFFRRVKHFSLGRTLGMTIIAMG 52 T ++ LI + +FK + + + + G ++ + Sbjct: 4 IFITVVIALILDIVFKDPGQDYHPVALIGRYIAFIEKKLYPKKPAKKALILCGGLLVGLT 63 Query: 53 VTFLLLRALQGVLFNV-PTLLVWLLI----GLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 + + A F L ++ I + + + Sbjct: 64 LLPVSFIAFIYQHFTQKLPFLFQVVFQGGGLFFAIAPTGLAFSVNTIKNHLKDGNLAEAR 123 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 G + E +R +L +AP+FW ++GG G Sbjct: 124 KSLGMIVSRDTRELPVTE--VVRGSLESLAENTGDGVVAPIFWYLIGGLPGVWFYRTVNT 181 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWF 222 L + + + R+ + +D +L+++P R+ GV+ L ++A+ W Sbjct: 182 LDSMVGYKSERYLYFGRIAAKLD---DLLNYLPARITGVLMVLAAFILRYDWKRAIKTWL 238 Query: 223 ASLGDFHTSQYQVLTRLAQFSLAREPHVDKVET--------------PKAAVSMAKKTSF 268 + + + SL + + P + K Sbjct: 239 RDAKKHPSPNGGIPESVLAGSLGVRLGGENIYHGQKSFRAYLGEPLNPLTPEVIDKALKL 298 Query: 269 VVVVVIALLTIYGA 282 V ++ ++G Sbjct: 299 FWFTVFLMVLLFGG 312 >UniRef50_C0GDW1 Cobalamin biosynthesis protein CobD n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDW1_9FIRM Length = 316 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 7/159 (4%) Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 V F++ A ++ V + V +++ + + + + D A A Sbjct: 65 AVLFMVWAA--SLIHPVAGVAVSVVLLSTTLAVRSLSEAAQDVIKPLASGDL-PGARYAV 121 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 + + A DE E R + APLF+ +VGG M Y + Sbjct: 122 SMIVGRDT-ALMDEPEVARATVETVAENTVDGVTAPLFYALVGGLP---LAMAYKAVNTM 177 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYAL 210 L + + V +W+P R+ V + Sbjct: 178 DSMLGYKNDRYLYFGRAAAKLDDVANWLPARINVVAMLV 216 >UniRef50_A9A601 Cobalamin biosynthesis protein CobD n=4 Tax=Thaumarchaeota RepID=A9A601_NITMS Length = 323 Score = 43.6 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 85/274 (31%), Gaps = 42/274 (15%) Query: 43 TLGMTIIAMGVTFLLLRALQGVLFNVPTL-----------LVWLLIGLLCIGAGKVRLHY 91 G + +++ L + F + L ++ L+ I + + Sbjct: 52 RFGGIFVVTIPAGIVVTLLLTLDFGISLLSTDWITLIVSVVIGALLLKTTIAIKGLERYA 111 Query: 92 HAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL 151 A + + N+ + + + + D+ + + ++ PLF+ Sbjct: 112 MAVVESLEMNNLDSARENLSMI--VKRNTSNLDKNHVISGVLESVSENTVDGITGPLFYY 169 Query: 152 IVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 + G G + + + D VL+++P RL G+V + Sbjct: 170 AIFGLPGAFVYRIINTADSMIGYKTDIFKNLGWFAATCD---TVLNYIPSRLTGLVMIIS 226 Query: 212 G-----HGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKV------------- 253 + +++ + +A + A +KV Sbjct: 227 AAILQNNWKESYKIMIRDGKKTESPNAG--YPMAALAGALGTKFEKVNHYELGSGELTLT 284 Query: 254 -ETPKAAVSMAKKTSFVV-----VVVIALLTIYG 281 E +A+S+ K TS + V ++ +LT+ G Sbjct: 285 KEHVHSAISIMKLTSILFFGLVIVPIVTVLTLIG 318 >UniRef50_A1UIE7 Adenosylcobinamide-phosphate synthase n=31 Tax=Actinomycetales RepID=A1UIE7_MYCSK Length = 344 Score = 43.6 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 47/155 (30%), Gaps = 10/155 (6%) Query: 96 TAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGG 155 D A + L P+ D R ++ +APL W V G Sbjct: 109 EVLDTGDIEAGRDLLPSLCGRD--PSVLDAGGLTRAAVESIAENTSDAQVAPLVWAAVAG 166 Query: 156 TWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI---- 211 G + G L A + + +D L+++P RL G++ AL Sbjct: 167 VPGLLVYRGANTLDAMIGNRSPRYARFGWAAARLD---DALNYLPARLTGLLAALCAPVV 223 Query: 212 -GHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLA 245 G A+ AW + V +L Sbjct: 224 GGSPVAAMHAWRRDAHRHPSPNAGVAEATFAGALG 258 >UniRef50_A4CCJ7 Putative cobalamin biosynthesis protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CCJ7_9GAMM Length = 316 Score = 43.6 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 19/219 (8%) Query: 3 LFTTLLVLIFERLFKLGEHWQ-----------LDHRLEAFFRRVKHFSLGRTLGMTIIAM 51 L L+ + ER L + + + R+ + L TLG + A Sbjct: 12 LIILLVAICAERFLPLAKSYHPLTLYQLIIQNIRTRIYQANNPTWYQYLAGTLGAVLPAA 71 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 V L + + P LI + + ++ + N + Sbjct: 72 LVLALCFGIISFAHY--PQWFAG-LILYISLDFQPLKQSLAKIPSLLMHNQKSTARDILK 128 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 ++ L R Y +F + G + +GY L+ Sbjct: 129 PWLRRQTDT--LSSLGIIKASIETLTLRFARHYFVIVFLYLFFGAY---VALGYRLLQIT 183 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYAL 210 + ++ + L +D +++++++VP+RL + L Sbjct: 184 RQTWSKKTPINSPLLRPVDTLIYLIEFVPIRLLCLSLIL 222 >UniRef50_D2MJU6 Cobalamin (Vitamin B12) biosynthesis CbiB n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJU6_9BACT Length = 290 Score = 43.2 bits (100), Expect = 0.009, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 9/196 (4%) Query: 25 DHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLL---VWLLIGLLC 81 + + +F + L G++FL + F V L +W+++G Sbjct: 9 ELLIRTWFISATSRRIAGLLLAVF-VPGLSFLAAWGSLRLAFLVHPWLGHLLWIVLGYTT 67 Query: 82 IGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINF 141 + A + H A L + + +++ + Sbjct: 68 LAAKDLADHAWEVHRRLHAGSLQEA-RQAVSLMVGRDTGRLTETEIAGAAIESVAENTSD 126 Query: 142 RFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPV 201 +APLF+L +GG + Y L + + + + + + +P Sbjct: 127 G-VIAPLFYLAIGGPP---LALAYKALNTLDSMIGYRDASYRDIGWASAKLDDLANVIPA 182 Query: 202 RLAGVVYALIGHGEKA 217 RL+ + L H A Sbjct: 183 RLSAGLLVLSSHFRHA 198 >UniRef50_Q3ZY68 Cobalamin biosynthesis protein n=5 Tax=Dehalococcoides RepID=Q3ZY68_DEHSC Length = 307 Score = 43.2 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 18/197 (9%) Query: 27 RLEAFFRRVKHFSLGR------TLGMTIIAMGVTFLLLRALQGVLF-----NVPTLLVWL 75 L F + FS R T G + + V+ + + +L Sbjct: 29 WLGKFISLLDRFSPSRNPKIQFTYGAFLSILTVSVTFTAVFFILGYLKEFNTALYVLAGG 88 Query: 76 LIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI--HGVPAGCDEREYLRELQ 133 LI + + +N S A L H E ++ Sbjct: 89 LILKPAFCLREQWVIALKIKKLLEKNRSGAPPKELETLLGTVPHAEDGPSREDVISASIR 148 Query: 134 NALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVL 193 + + F++APLF+ I G G L + + +Y L + Sbjct: 149 SISENASD-FFVAPLFYFIFLGVPGAFAYRAINTLDSMIGYHGKY----EYLGKFAARLD 203 Query: 194 HVLDWVPVRLAGVVYAL 210 V ++VP RL +++ + Sbjct: 204 DVANFVPARLTALLFVI 220 >UniRef50_P74475 Cobalamin biosynthesis protein cobD n=9 Tax=Cyanobacteria RepID=COBD_SYNY3 Length = 342 Score = 43.2 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 7/190 (3%) Query: 27 RLEAFFRRVKHFSLGRTLGM-TIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAG 85 + + G LG+ II+ G L+ L + V +++ ++ C Sbjct: 51 IIRKVNDKNSRRLWGIFLGLKIIISSGFLAWLIVYLAEKVSPVLAVIIQIIGVASCFAGH 110 Query: 86 KVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYL 145 + + + D ERE LR ++ Sbjct: 111 SLAQAAQSVIEPLKAGDLPTARQKLALFVGRD--TNNLSEREILRATVESVAENTVDGVT 168 Query: 146 APLFWLIVGGTWGPVTL----MGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPV 201 +PLF+ ++G + V + Y + + P+ L + L W+P Sbjct: 169 SPLFYALLGILFPFVGPWPLAIAYKAASTLDSMVGYKREPYTDLGWFSARLEDYLTWLPC 228 Query: 202 RLAGVVYALI 211 RL + A++ Sbjct: 229 RLTVFMLAIL 238 >UniRef50_C7NCQ6 Cobalamin biosynthesis protein CobD n=9 Tax=Fusobacteriaceae RepID=C7NCQ6_LEPBD Length = 323 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 29/257 (11%), Positives = 77/257 (29%), Gaps = 20/257 (7%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEA---------FFRRVKHFSLGRTLGMTIIAMGV 53 L+ + + +F ++ ++ R+ F G L + +++ Sbjct: 7 FIKILIAYVLDLIFGDPQNVVHPVQVIGKIISAGEKVLLRKKYKFLAGAALNIFTVSITY 66 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 T + + V +V +++ + + + + D L Sbjct: 67 TSM-YLISKSVKISVFFMIIEIYLMYTIFSINSLAREGNRVYRILKEGDIERARKDLSYL 125 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 DE+ +R + +AP+F++ +GG +T L + Sbjct: 126 VSRDTETM--DEKMIIRSTMETISENTVDGIVAPMFYMFLGGMPLAMTYKAINTLDSMVG 183 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV-----VYALIGHGEKALPAWFASLGDF 228 + + + +D V +++P R+ G+ L + +L + + Sbjct: 184 YKNEKYMDFGKFSAKVD---DVANFIPARITGILIVLASMILGYDYKNSLKIFLRDRKNH 240 Query: 229 HTSQYQVLTRLAQFSLA 245 + +L Sbjct: 241 SSPNSAHSEASVAGALG 257 >UniRef50_B9KKH9 Adenosylcobinamide-phosphate synthase n=3 Tax=Rhodobacter sphaeroides RepID=B9KKH9_RHOSK Length = 325 Score = 42.8 bits (99), Expect = 0.012, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 66/220 (30%), Gaps = 12/220 (5%) Query: 19 GEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPT--LLVWLL 76 W + + A R S + A+ VT L +L ++ LL +L Sbjct: 44 PVVW-IGRIISALDERWNRGSEAERRRGGVAALLVTVLAAALPAALLQSLLPGGLLGAVL 102 Query: 77 IGLLCIGAGKVR---LHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQ 133 GLL +R H A D + P+ D R Sbjct: 103 TGLLAWPLVALRSMHEHVEAVAVPLDAGDLPGARRAVSMIVGRD--PSQLDGAGVTRAAL 160 Query: 134 NALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVL 193 +L + +APLFW ++ G G L + + D Sbjct: 161 ESLAENSSDGIVAPLFWGVLLGLPGIAAYKAINTLDSMIGHRTPRHEAFGWASARTD--- 217 Query: 194 HVLDWVPVRLAGVVYALI-GHGEKALPAWFASLGDFHTSQ 232 ++ +P RL GV++A G +AL + Sbjct: 218 DWVNLIPARLTGVLFAFASGRPREALAVMRRDARAHRSPN 257 >UniRef50_Q0C212 Cobalamin biosynthesis protein CobD n=8 Tax=Rhodobacterales RepID=Q0C212_HYPNA Length = 316 Score = 42.8 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 5/186 (2%) Query: 47 TIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHAR 106 + T+L + + + +V I + + + H A S D A Sbjct: 64 LLAVTLATWLAVLLVHSLPDGWTGYVVQAAIASSLLASRSLYQHVAAVAVPLSVGDQSAA 123 Query: 107 ATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYA 166 + P+ DE R +L +APLFW + G G V Y Sbjct: 124 RKAVSLIVGRD--PSRLDEAGIARASIESLAENASDGVIAPLFWGALFGIPGLV---AYK 178 Query: 167 FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLG 226 + + + + V + +P R+ G+ + AL Sbjct: 179 TINTLDSIIGHRNERYEAFGGFAARLDDVANLIPARMTGLFVVIASMRFSALAIVVRDAR 238 Query: 227 DFHTSQ 232 + Sbjct: 239 KHRSPN 244 >UniRef50_C6PE10 Cobalamin biosynthesis protein CobD n=3 Tax=Thermoanaerobacterales RepID=C6PE10_CLOTS Length = 320 Score = 42.8 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 12/189 (6%) Query: 24 LDHRLEAFFRRVKHFSLGRTLGMTIIAMGV------TFLLLRALQGVLFNVPTLLVWLLI 77 + + K R G + A+ V + ++ L+ V + + +L+ Sbjct: 32 ISFIERNLRKITKTGRQERIAGYFLCAIVVFTSYISGYFIIYMLKEVNVYLGK-ISEVLL 90 Query: 78 GLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALL 137 C+ + + RND M + ++ Sbjct: 91 IYTCLATNDLAKSANKVYEPLKRNDLVEARKMLS-FIVSRDTENLDLGDIIRGTVETVAE 149 Query: 138 WINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLD 197 I+ +APLF+ +GG + Y + + + + VL+ Sbjct: 150 NISDGI-IAPLFYAFIGGVP---LALAYKASSTLDSMVGYRNEKYEDIGYASAKLDDVLN 205 Query: 198 WVPVRLAGV 206 ++P R+ G+ Sbjct: 206 FIPSRITGL 214 >UniRef50_Q720N7 Cobalamin biosynthesis protein cobD n=17 Tax=Listeria RepID=COBD_LISMF Length = 315 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 16/199 (8%) Query: 21 HWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ-----GVLFNVPTLLVWL 75 W + F + +F+ G +T+ GV + L + V L + Sbjct: 34 KWLTIILRKIFHGKSLYFAGGLLFVLTVGMTGVVSWFILFLSAKIAYWLYVAVFVYLGYT 93 Query: 76 LIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNA 135 + + C+ + + + A A + + + E ++ Sbjct: 94 TLAMTCLAKEARK------IQRTLADGDLAAARVQVGMIVGRDTDKLTAEEISKATIETV 147 Query: 136 LLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHV 195 +APLF+L +G GPV + Y + + + + + + Sbjct: 148 AENTADG-VIAPLFYLFIG---GPVLALMYKAVNTLDSMVGYKNEKYRAIGFVSAKMDDI 203 Query: 196 LDWVPVRLAGVVYALIGHG 214 +++P RLA + +I Sbjct: 204 ANFIPARLAWF-FLVIASF 221 >UniRef50_A3DK66 Adenosylcobinamide-phosphate synthase n=3 Tax=Clostridium thermocellum RepID=A3DK66_CLOTH Length = 351 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 10/180 (5%) Query: 44 LGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLL---IGLLCIGAGKV-RLHYHAYLTAAS 99 + ++ + L++ AL + + +L + + L G+ V + Y + Sbjct: 78 VAFVLVMTTLVALIVAALLELSMFIDPILFHAVNTCLIYLSFGSRAVAKESYKVFDALKE 137 Query: 100 RNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFW--LIVGGTW 157 R+ AR +A + + DE+E ++ + ++P+F+ L + Sbjct: 138 RDVFKARNMLAAVIGIK---TENLDEKEIIKRTVESTAEDTADRVISPIFYASLASFFSL 194 Query: 158 GPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKA 217 G + Y + + + + +++++P RL G+ + G Sbjct: 195 GATIVWIYKTINILDRMVGYKNDEYRHFGWATAKLDDIVNFIPARLTGI-LIVAGAFLTG 253 >UniRef50_A1TME6 Adenosylcobinamide-phosphate synthase n=8 Tax=cellular organisms RepID=A1TME6_ACIAC Length = 342 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 4/125 (3%) Query: 87 VRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLA 146 +R A A +++ R + V A + +++ +N +A Sbjct: 119 LRDEVVAVEEALAQSLEAGRER--LSRLVSRDVHALQAVQVRESAIESLAENLNDS-VVA 175 Query: 147 PLFWLIVGGTWGPVTLMGYAFLRA-WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAG 205 PLFW + G G A W Y R VL WVP R+ Sbjct: 176 PLFWFALLGLPGAALYRFANTADAMWGYPGMRGGRYWQWAGKWAARADDVLSWVPARITA 235 Query: 206 VVYAL 210 V+ AL Sbjct: 236 VLLAL 240 >UniRef50_Q939K6 CbiB n=6 Tax=Actinomycetales RepID=Q939K6_PROFR Length = 548 Score = 42.4 bits (98), Expect = 0.015, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 12/210 (5%) Query: 4 FTTLLVLIFERLFKLGEH-WQ----LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLL 58 + + +RL + W +++ S+G+ ++A+ L Sbjct: 220 VGLISAVTADRLIPDPANPWHPVAWFGTWAGWLEKKMWRDSVGQGAAYLVVALLPVATLG 279 Query: 59 RALQGVLFN--VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 A++ + G L IG+ + +D A L Sbjct: 280 VAVEAATRRHPLAHATATAAAGWLVIGSQSLATEGEQMADELEGDDLSAARDRLPHLCGR 339 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 +P E+E R +L +A L+W V G G + L A + Sbjct: 340 --IPDTMPEQELARGTIESLAENTADSGVASLWWGSVAGIPGMLIHRASNTLDA---MVG 394 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 + + LDW+P RL G+ Sbjct: 395 HHNEHFEHFGKCAARLDDGLDWIPERLTGI 424 >UniRef50_C4ZB09 Cobalamin biosynthesis protein CobD n=3 Tax=Clostridiales RepID=C4ZB09_EUBR3 Length = 330 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 67/206 (32%), Gaps = 13/206 (6%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ 62 L +L+ + +RL + + + + + L T+ AM V ++ Sbjct: 30 LIGSLISFLDKRLNCDAGYN-ISEKKLNLIKYKRGMLLAFTVIFATFAMSVIIIVAAYSI 88 Query: 63 GVLFNVPT--LLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 + V ++ W ++ C+ +R++ A R D A + + Sbjct: 89 NLYAGVIAEAVMTWQILATKCLRVESMRVY------DALRTDGVDAGRRAVSMIVGRDTS 142 Query: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 ++ + +AP+ + +G GPV Y + L Sbjct: 143 VLDAAGVTRAAVETIAENTSDG-VIAPMLYTAIG---GPVLGFVYKAVNTMDSMLGYKND 198 Query: 181 PHHRLQSGIDAVLHVLDWVPVRLAGV 206 + + V++++P R++ Sbjct: 199 KYMYFGRFAARLDDVVNFIPARISAY 224 >UniRef50_D1BMI1 Cobalamin biosynthesis protein CobD n=4 Tax=Veillonellaceae RepID=D1BMI1_VEIPT Length = 330 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 47/177 (26%), Gaps = 5/177 (2%) Query: 38 FSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTA 97 + G +G+ +I++ + LL L GV+ ++I + I + Sbjct: 65 WYGGIAVGLILISVYIIVSLLLWLGGVVDEWVYYAFEVVILYIAISPRSLAGAGFTISQL 124 Query: 98 ASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTW 157 + + + + ++ + Sbjct: 125 IKQGNIVEARKRLS-WIVGRDTEDLDESEITRATVETIAENTVD----GIIAPFFFFIIG 179 Query: 158 GPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG 214 GP+ + Y L + +L+W+P R+ V+ + Sbjct: 180 GPMGAILYRTANTMDSMLGYKNQKYLYFGRVAARFDDILNWIPARITFVLIVISAFF 236 >UniRef50_A8MCQ2 Cobalamin biosynthesis protein CbiB n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MCQ2_CALMQ Length = 320 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 17/222 (7%) Query: 3 LFTTLLVLIFERLFKLGEHWQL----DHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLL 58 L T + LI + L+ + + H R+ GR G+ + VT +LL Sbjct: 6 LVTLTIALIMDYLYPMHKGLLYLIHPVHLTYGLAVRLYRPYSGRLWGVAVWFSSVTPILL 65 Query: 59 RALQGVLFNVPTLLVWLLIGLLCIGA--------GKVRLHYHAYLTAASRNDSHARATMA 110 ++ + + LLI L+ G + Y A + + +A Sbjct: 66 IYSAPIISIPLSNPILLLIILVYAGFIVKLSISLRLLLSLVEDYGKAINEGYLNEARGVA 125 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 +L + D + +L + +PLF+L++ G G + + + Sbjct: 126 QQL--VRRNVWVIDIGHVNSAVVESLFESLVDGFTSPLFYLLLFGPIGALLQRLSNTMDS 183 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 L P+ R+ V +++ P RL ++ L G Sbjct: 184 A---LGYTDEPYRRIGWFSAKVDTAMNYAPARLTALLIVLAG 222 >UniRef50_C6L9T1 Cobalamin biosynthesis protein CobD n=5 Tax=Clostridia RepID=C6L9T1_9FIRM Length = 349 Score = 41.6 bits (96), Expect = 0.027, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 16/205 (7%) Query: 29 EAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLC---IGAG 85 E F +R + + +I+ GV LLL A Q V L ++ LLC + Sbjct: 75 EKFHKREFAAGTLLAVCVVLISAGVPLLLLLAAQMVH----PYLRLVIESLLCWQLLATK 130 Query: 86 KVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYL 145 +R +ND + D + + + Sbjct: 131 SLRDESMKVYRVLQKNDIKGARKAVSMIVGRD--TENLDAAGVTKAAVETVAENTSDGVI 188 Query: 146 APLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAG 205 AP+F++ +G G V Y + L + + V++++P RL+ Sbjct: 189 APMFYMAIG---GAVLGFFYKAINTMDSMLGYKNDRYLYFGRFAAKLDDVVNFLPARLSA 245 Query: 206 VVYALIGHG---EKALPAWFASLGD 227 + + + A AW D Sbjct: 246 L-FMIAASFLLRMDAKNAWRIFRRD 269 >UniRef50_B0TIK7 Cobalamin biosynthesis protein cbib/cobd n=4 Tax=Bacteria RepID=B0TIK7_HELMI Length = 346 Score = 41.6 bits (96), Expect = 0.028, Method: Composition-based stats. Identities = 22/211 (10%), Positives = 54/211 (25%), Gaps = 16/211 (7%) Query: 46 MTIIAMGVTFLLLRALQGVLFNVPTL------LVWLLIGLLCIGAGKVRLHYHAYLTAAS 99 ++ A+ + L L + NV T L + + + Sbjct: 81 FSVAALVMLALHLAGFSTAVDNVLTWPALLGKLAAATLLGIAFAGRCLAEAALEIKGLLE 140 Query: 100 RNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGP 159 + D + + ++ +PLF+ ++ G G Sbjct: 141 QGDLVEARRKLS-WIVGRDTVNLGESEIVRATVETVAENTVDGI-TSPLFYALLLGIPGA 198 Query: 160 VTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGH-----G 214 Y + + + + +++P RL G+ L Sbjct: 199 ---YAYKAINTLDSMIGYRNERYLWFGRFAARLDDAANYIPARLTGLSMVLAATMMGFPF 255 Query: 215 EKALPAWFASLGDFHTSQYQVLTRLAQFSLA 245 ++ + AW + + + +L Sbjct: 256 KRMIAAWREDARRHPSPNSGIPESIMAGALG 286 >UniRef50_D0I861 Adenosylcobinamide-phosphate synthase n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I861_VIBHO Length = 321 Score = 41.6 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 10/208 (4%) Query: 24 LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIG 83 + ++ + L L + I+ + V LL+ Q V + L+ L + L Sbjct: 49 ISDKVNHAEDTPEQQRLAGALSLAIMWLTVAVLLVALKQLVWIDWLFELLLLWLALGWKP 108 Query: 84 AGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRF 143 + L A SR+D T+ T ++ + LL R Sbjct: 109 VTNLALEVER---ALSRDDKPQARTLLA--TALNRQTYSLSPVGIAKAGCETLLVGYVRG 163 Query: 144 YLAPLFWLIVGGTWGPVTLMGYA-FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVR 202 + LFW V G G A R W Y + +L +LDW+P R Sbjct: 164 LIGILFWYAVAGGIGAFLYALVAQLTRTWPPRKQEYAQFGLPTSA----MLSLLDWLPSR 219 Query: 203 LAGVVYALIGHGEKALPAWFASLGDFHT 230 L ++ A + AL A ++ Sbjct: 220 LFALLIAAGHRFQPALTAIREQGQNWSV 247 >UniRef50_A3CL57 Cobalamin biosynthesis protein cobD n=1 Tax=Streptococcus sanguinis SK36 RepID=COBD_STRSV Length = 316 Score = 41.6 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 57/215 (26%), Gaps = 16/215 (7%) Query: 1 MTLFTTLLVLIFERL------FKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVT 54 MTL L ++ + L + W + + K G + V Sbjct: 1 MTLIAIFLAVLLDWLIGDPYSWPHPVKWMGSYIYLCMRLQEKKQFSPYLFGFFLWLTTVG 60 Query: 55 FLL-----LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 L L L G+ V LVW+ + + A + Sbjct: 61 LALGVSCGLLWLAGLAHPVLYWLVWIYLAYASLAAKSLAFEAQKVYHTLKFGTLEEARKQ 120 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLR 169 G + + E ++ + + L+ GP+ M Y + Sbjct: 121 VG-MIVGRETSQLTPEEISKATIETVAENTSD----GVIGPLLCLFLGGPILAMTYKAIN 175 Query: 170 AWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLA 204 + + ++ + + + +P RL Sbjct: 176 TLDSMVGYKTEKYRKIGLISAKMDDLANLIPARLT 210 >UniRef50_B2IE17 Cobalamin biosynthesis protein CobD n=16 Tax=Alphaproteobacteria RepID=B2IE17_BEII9 Length = 337 Score = 41.3 bits (95), Expect = 0.035, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 10/184 (5%) Query: 29 EAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRAL---QGVLFNVPTLLVWLLIGLLCIGAG 85 F R F+ R G I+ + F+ L A +L ++ + LC + Sbjct: 50 RNFNRLHDSFATRRLAGFLILTALLFFVFLVASFVQDLLLHGGMPFVIGFPLLALCASSL 109 Query: 86 KVRLHYHAYLTA---ASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFR 142 + H ++ A A N+ A + V + +++ + Sbjct: 110 LAQRSLHDHVQAVGDALANEGIEAGRSAVARIVGRDVTQLDEAGILRAAVESLAENFSDG 169 Query: 143 FYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVR 202 AP FWL +GG G L Y + + H + V++W R Sbjct: 170 IV-APAFWLALGGLPG---LCLYKTINTADSMIGHRTERHEAFGFSAAKLDDVVNWPAAR 225 Query: 203 LAGV 206 LA + Sbjct: 226 LAAL 229 >UniRef50_Q729W0 Cobalamin biosynthesis protein CobD, putative n=3 Tax=Desulfovibrio vulgaris RepID=Q729W0_DESVH Length = 320 Score = 41.3 bits (95), Expect = 0.036, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 5/198 (2%) Query: 24 LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIG 83 + H L R + R G+ + V + V LV L + + Sbjct: 34 IGHLLGPLERLGRALGATRPAGVVCTVLAVLCAGVVVTLAGALPVVGALVSLWLAYAGLA 93 Query: 84 AGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRF 143 G + A L A A + + A + + N Sbjct: 94 LGCLLREGRAALHAVEHGSLEE-GRAALAMLVSRDTSALDRDGLRRALAETLAENFNDG- 151 Query: 144 YLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRL 203 ++AP WL+ G GPV L Y + RL + VL WVP R Sbjct: 152 FVAPFLWLVAG---GPVGLWCYKTVSTMDSMWGYRTERWERLGWACARLDDVLAWVPARC 208 Query: 204 AGVVYALIGHGEKALPAW 221 V+ + W Sbjct: 209 CVVLLWVTAPFAGVPGQW 226 >UniRef50_Q1Z1A5 Adenosylcobinamide-phosphate synthase n=4 Tax=Vibrionaceae RepID=Q1Z1A5_PHOPR Length = 318 Score = 41.3 bits (95), Expect = 0.036, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 8/192 (4%) Query: 27 RLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGK 86 + + G A+ LL+ + +L L + + + Sbjct: 46 LADKVNNPNDNHKQRLFSGTLTWALIWGTLLILLIALYQLVWVDILFQLTLLWVALDWRN 105 Query: 87 VRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLA 146 +++A ++ D + + L + R Sbjct: 106 TAKLSQHFISAYAKEDKVRCRQLLEYPLNRNTQNLSLLGLGKAGAETQLLSYG--RLVAG 163 Query: 147 PLFWLIVGGTWGPVTL-MGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAG 205 LFW + G G + + RAW +Y +L +LD +P+R+ Sbjct: 164 VLFWYAIAGGIGAIMYRVAICLARAWSPSRHQYNIFGLPA----VRILAMLDIIPLRILA 219 Query: 206 VVYALIGHGEKA 217 + +G+ KA Sbjct: 220 L-LITVGNNSKA 230 >UniRef50_Q8KDV4 Cobalamin biosynthesis protein cobD n=11 Tax=Chlorobiaceae RepID=COBD_CHLTE Length = 319 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 5/146 (3%) Query: 64 VLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGC 123 +L + ++V +L+ I + H A A D + + Sbjct: 76 LLHPLAGVVVSVLLLYFAIAPRDLYNHGSAVRDALRAGDLELARQKVAMMVGRD--TSML 133 Query: 124 DEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHH 183 DE R ++ APLF+ ++ G G L + + Sbjct: 134 DEEGVARAAVESVAENTSDGVTAPLFYGLLFGPAGAWLYKASNTLDSMFGYRNERYREFG 193 Query: 184 RLQSGIDAVLHVLDWVPVRLAGVVYA 209 + ++++P RL + A Sbjct: 194 WASA---RFDDFMNYLPSRLTVLAVA 216 >UniRef50_Q897L3 Cobalamin biosynthesis protein cobD n=13 Tax=Clostridium RepID=COBD_CLOTE Length = 317 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 18/168 (10%) Query: 52 GVTFLLLRALQGVLFNVPTLLVW-------------LLIGLLCIGAGKVRLHYHAYLTAA 98 + L++ + F +P L++W +++ + A +++ A Sbjct: 52 TLGGLVVLTIAITSFGIPFLILWMVKDSFWIFHFLNIILIWTTLAAKSLKVEGKRVYYAL 111 Query: 99 SRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWG 158 D + +E +++ + +APLF+ ++GG Sbjct: 112 KNEDIQEAREKLSYIVG-RDTRNLTEEEIIRADIETIMENTADG-VIAPLFYAMIGGAP- 168 Query: 159 PVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 M Y + L + L V V +++P R++GV Sbjct: 169 --FAMMYKGINTMDSMLGYMNDKYIHLGFFPAKVDDVFNFIPARISGV 214 >UniRef50_A9MLR0 Cobalamin biosynthesis protein cbiB n=55 Tax=Enterobacteriaceae RepID=CBIB_SALAR Length = 319 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 25/220 (11%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLD--------HRLEAFFRRVKHFSLGRTLGMTIIAMG 52 MT+ + + + + +HW ++ RR H +G ++ + Sbjct: 1 MTILAWCIAWVLDFIIGDPQHWPHPVRWIGRLITFVQHIVRRYCHSDKALRIGGGVMWIV 60 Query: 53 VTFLLLRALQGVLFNVP-------TLLVWLLIGLLCIGAGKVRLHYHAY--LTAASRNDS 103 V G+ + V L W + + R A + R + Sbjct: 61 VVGATW----GMAWGVLALAQRIHPWLGWSVEVWMIFTVLAGRSLARAAQDVERPLREND 116 Query: 104 HARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLM 163 A + + + E+ ++ +APLF+L +GG M Sbjct: 117 LAESRIKLSWIVGRDTSQLQPEQINRAVVETVAENTVDGI-IAPLFFLFLGGAP---LAM 172 Query: 164 GYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRL 203 Y + + + + + V +++P RL Sbjct: 173 AYKAVNTLDSMVGYKHEKYRAIGMVSARMDDVANYLPARL 212 >UniRef50_C5D3K3 Cobalamin biosynthesis protein CobD n=3 Tax=Bacillaceae RepID=C5D3K3_GEOSW Length = 323 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 61/209 (29%), Gaps = 10/209 (4%) Query: 24 LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNV-PTLLVWL----LIG 78 + + F +R+ R G+ +A + A V + + + + ++ Sbjct: 30 IGSFISFFDKRLNQGRYRRMKGIITVAAVAGMVYCLASLVVYISYSLSWIFGVMMEAVLI 89 Query: 79 LLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLW 138 I ++ L + + DE E +R + Sbjct: 90 FTTIATKSLQEAAWNVLIPLEQGKIEKARRELSMIVGRD--TENLDEPEIVRACVETVAE 147 Query: 139 INFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDW 198 APLF+ +GG + Y + L + + V+++ Sbjct: 148 NTSDGITAPLFYAFIGGAP---LALFYRAVNTCDSMLGYKNEAYREFGWASARLDDVVNY 204 Query: 199 VPVRLAGVVYALIGHGEKALPAWFASLGD 227 VP RL +V + G++ D Sbjct: 205 VPARLTAMVMIFVHSGKRLRYCLRVLFRD 233 >UniRef50_B8I0R7 Cobalamin biosynthesis protein CobD n=4 Tax=Clostridiales RepID=B8I0R7_CLOCE Length = 320 Score = 40.9 bits (94), Expect = 0.045, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 64/208 (30%), Gaps = 17/208 (8%) Query: 43 TLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND 102 T G +I + + + L + + V +L + ++ + +R++YH ++ Sbjct: 64 TAGTFVIPLLLLYFLGKVSIYIEVAVASLFCYQILATKSLKTESMRVYYH------LKDH 117 Query: 103 SHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTL 162 A A + +E ++ + +APL +L++GG Sbjct: 118 DMANARKYLSWIVGRDTQNLTEEGIARAAVETVAENTSDG-VIAPLIFLVLGGAP---LG 173 Query: 163 MGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGE------K 216 Y + + + VL+++P L+ + Sbjct: 174 FLYKAVNTMDSMIGYKNDKYLYFGKFAARFDDVLNFIPAVLSAY-MIIAASFVCGLDYKN 232 Query: 217 ALPAWFASLGDFHTSQYQVLTRLAQFSL 244 AL + + + + +L Sbjct: 233 ALRIYKRDKRNHSSPNSAKTEAVCAGAL 260 >UniRef50_C9MYC2 Cobalamin biosynthesis protein CobD n=3 Tax=Fusobacteriaceae RepID=C9MYC2_9FUSO Length = 334 Score = 40.5 bits (93), Expect = 0.059, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 77/251 (30%), Gaps = 14/251 (5%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGV---TFLLLRA 60 +L LIF K+ Q+ ++ F + + G +G T++ + V TFL++ Sbjct: 9 IAFILDLIFGDPEKITHPVQIIGKMITFLEKKLYGKKGSFIGGTVLGILVVASTFLVMYG 68 Query: 61 LQGVLFNVPTL-LVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGV 119 + V L ++ + + + + L + Sbjct: 69 FVKLTKIVKVLEILEIYLMYTVFSVKSLAREGKRVYKILKLGNLKVAREKLSYL-VSRDT 127 Query: 120 PAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQ 179 ++ + +AP+F++ VGG M Y + L Sbjct: 128 EKMDKVMIIRSTMETISENMVDG-VIAPMFYMFVGGLP---LAMAYKAINTLDSMLGYKN 183 Query: 180 TPHHRLQSGIDAVLHVLDWVPVR-----LAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 + + + + V++++P R + Y L + + A + + + Sbjct: 184 EKYAKFGTFSAKLDDVVNFIPARISGIFITAASYILRYNYKNAWKIFKRDRKNHASPNSG 243 Query: 235 VLTRLAQFSLA 245 +L Sbjct: 244 HSESAVAGALG 254 >UniRef50_UPI0001C336B8 adenosylcobinamide-phosphate synthase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C336B8 Length = 327 Score = 40.5 bits (93), Expect = 0.061, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 66/193 (34%), Gaps = 7/193 (3%) Query: 25 DHRLEAFFRRVKHFSLGRTLGMTIIA-MGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIG 83 + L++F +R G LG+ ++ GV ++ ++ + +++ + C Sbjct: 42 NFLLKSFKKRFMRRCTGIVLGLLLVVGSGVFGWMIGLIKYHFSPLIGVVIESIFLASCFA 101 Query: 84 AGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRF 143 +RL + +R + + ++ R + + + Sbjct: 102 GRSLRLAAYDVFIPLNRKKINLARIKLSQYVGRSTT--HLSQKNIWRTVLETISENSIDG 159 Query: 144 YLAPLFWLIVGGTW----GPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWV 199 +APLF+ I+G + Y + + P + + +L W+ Sbjct: 160 VMAPLFYAIIGALLPHTNSLAFALAYKASSTLDSTIGYKKEPFADIGWFSANLEDILTWI 219 Query: 200 PVRLAGVVYALIG 212 P RL + A++ Sbjct: 220 PCRLGVLTLAILA 232 >UniRef50_C7PI39 Cobalamin biosynthesis protein CobD n=6 Tax=Bacteroidetes/Chlorobi group RepID=C7PI39_CHIPD Length = 317 Score = 40.5 bits (93), Expect = 0.061, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 12/233 (5%) Query: 7 LLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLF 66 LL L L +L L +F + + GR L I+++ + + G+ F Sbjct: 17 LLDLALGDPRWLPHPIRLFGHLISFGTKTLNRGKGRFLKGMILSVLLCAICWLFFAGMQF 76 Query: 67 NVPTL-------LVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGV 119 + + L + + + A S A + Sbjct: 77 WLLRIQTPAFYYLFTSIFVFFALANKSLLQEGREVFDALSSQGLDAGRKRLS-WIVGRET 135 Query: 120 PAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQ 179 + + + ++ +APLF+ VGG +M Y + + + Sbjct: 136 KNLGENQIRTAVFETLSENLSDG-VIAPLFYYAVGGLP---AMMTYKMINTLDSMIGYKK 191 Query: 180 TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 + + V +++P R+ ++ L+ + L F + Sbjct: 192 EEYFWFGKFAARLDDVANFIPARITALLMVLVAFSRRGLTYIFRYGHQHASPN 244 >UniRef50_A3QBP9 Cobalamin biosynthesis protein CbiB n=3 Tax=Shewanella RepID=A3QBP9_SHELP Length = 327 Score = 40.5 bits (93), Expect = 0.066, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 45/174 (25%), Gaps = 10/174 (5%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFRRV--------KHFSLGRTLGMTIIAMGVTFLL 57 L+ + L L +Q + R + + + R G + + V Sbjct: 21 LLVAIFMALLAPLPREYQAFYWFSQLARSLSAKVARADRSANQQRVAGSLSVLLLVLPFW 80 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 L + L LC+ + A +R D + + Sbjct: 81 LILSFLLELAAFPWFFECLFLYLCLCDEQFHKVAEETGQALARQDKQRARRLLSQWVYRD 140 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 E + + L+ + +A + + VGG + L Sbjct: 141 TRE--LSEVGMSKTVIEKLMTTSIYGTVATILFFAVGGAPLVLGARMVKQLEYT 192 >UniRef50_Q9KCI3 Cobalamin biosynthesis protein cobD n=4 Tax=Bacillaceae RepID=COBD_BACHD Length = 319 Score = 40.5 bits (93), Expect = 0.067, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 8/180 (4%) Query: 32 FRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHY 91 +RR K L T+ + + A+ + + L +L V + + + G + Sbjct: 48 WRREKGVLLLLTVLLIVTALSLALVWLSYQVHLLLGVIVEALLIASTIAAKGLKEAAEEV 107 Query: 92 HAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL 151 L A+RN AR + ++ ++ + APLF+ Sbjct: 108 ARPL--ATRNLLEARRK--LSYIVGRDTDQLDEKEIARGAIETVAENTSDG-VTAPLFYA 162 Query: 152 IVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 ++GG + + + + D VL+WVP R+ GV+ L+ Sbjct: 163 LIGGAPLALLYRATNTCDSMVGYKNERYRDFGWASAKFD---DVLNWVPSRITGVLMLLL 219 >UniRef50_B5YL82 Cobalamin biosynthesis protein CobD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL82_THEYD Length = 325 Score = 40.5 bits (93), Expect = 0.070, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 69/186 (37%), Gaps = 10/186 (5%) Query: 33 RRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYH 92 R++ G L + + F ++ + + + WL +L AG + + Sbjct: 47 RKLNGRFGGFLLFLFVAVSVFLFSVIFVYFLNKLSSLSEITWLFSCILLAVAGSLFIALR 106 Query: 93 AYLTAASR------NDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLA 146 + A R +S +A ++ + + ++ + +++ ++ +A Sbjct: 107 GLIEEAKRINRLLNEESLEQARISLKALVGRDTDNLSADKIRIAIIESLAENLSDG-VIA 165 Query: 147 PLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 PLF+ ++GG + L + + + +D + +++P R+ G+ Sbjct: 166 PLFYFLIGGFPFLLLYKTVNTLDSMVGYKNEIYRKFGWFSAKMDDIF---NYIPARITGL 222 Query: 207 VYALIG 212 + LI Sbjct: 223 LIVLIA 228 >UniRef50_Q0W1P4 Adenosylcobinamide-phosphate synthase n=2 Tax=Euryarchaeota RepID=Q0W1P4_UNCMA Length = 315 Score = 40.5 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 97/309 (31%), Gaps = 43/309 (13%) Query: 3 LFTTLLVLIFE--RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLR- 59 + L+ L R + W R K F G ++A VT ++ Sbjct: 6 ILALLIDLFIGEPRTYAHPVVWIGTLIGYLKERAPKRFRFA--FGFFLMAFSVTLFVVAG 63 Query: 60 -ALQGVLFNVPTLLVWLLIGLL-------CIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 AL + + + +L L+ G L G R Y R D A Sbjct: 64 CALSILSYMISPVLGLLVTGYLLKSTFSLSFLWGISREIYEDL--KYGRFDLAKAKLPAL 121 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 + + G + L + + +APL + + G G + L + Sbjct: 122 VGRDVSKLNEGQMSSCVVESLGESFVDG----IMAPLLYFTLFGLPGALAYRAINTLDS- 176 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLA----GVVYALIGHGEKALPAWFASLGD 227 + H + + +++++P RL+ V GH +A+ Sbjct: 177 --MVGYKDEKHREMGFASAKMDDLVNYIPARLSLLLISVAAIATGHPLRAVKIGLRDARK 234 Query: 228 FHTSQYQVLTRLAQFSLAREPHVDKVET--------PKAAVSMAKK-------TSFVVVV 272 +A F+ ++K+ P A + + ++ ++V+ Sbjct: 235 P--PSTNSGFPMATFAGGLGVRLEKLNYYVLGEGLKPCAVSDIPRAIWFNRIISALLLVI 292 Query: 273 VIALLTIYG 281 ++A++ + G Sbjct: 293 ILAIMVMTG 301 >UniRef50_C0GMN8 Cobalamin biosynthesis protein CobD n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMN8_9DELT Length = 329 Score = 40.1 bits (92), Expect = 0.078, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 17/181 (9%) Query: 41 GRTLGMTIIAMGVTFLLLRALQGVLFNV----PTLLVWLLIGLLCIGAGKVRLHYHAYLT 96 GR GM + A ++ + + A G+ + + + C+G + H Sbjct: 49 GRGGGMILTAAMLSGVSILAAAGIFLASMVPGLEFIFMVFLVYSCMGLKDLVGHTRPIAR 108 Query: 97 AASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGT 156 A D RA ++ + A +++ +LA FW + G Sbjct: 109 ALEEGDL-GRARQKLQMIVGRDPSALDSSGVARAAVESVAENFVDG-FLALAFWFVAGCI 166 Query: 157 WGPV-----------TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAG 205 G V Y + + + + + + VL+ VP RL+ Sbjct: 167 LGQVLGVEPAFAGVLLAANYRMVNTLDAMVGYRSSRYMQFGRFAARLDDVLNHVPARLSI 226 Query: 206 V 206 + Sbjct: 227 L 227 >UniRef50_B6IPQ1 Cobalamin biosynthesis protein CobD n=1 Tax=Rhodospirillum centenum SW RepID=B6IPQ1_RHOCS Length = 336 Score = 40.1 bits (92), Expect = 0.081, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 55/191 (28%), Gaps = 4/191 (2%) Query: 15 LFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVW 74 L W LD RL R L L + + + + ++ Sbjct: 41 LAARAGDW-LDRRLNRIERSDATRRLRGLLTVLFLMLTALAVGTAVTVVARLLPYGWMLE 99 Query: 75 LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQN 134 LL+ L C+ + L A S D+ A + + D +R Sbjct: 100 LLLVLRCVAVRQPWAGMRGVLDALSGPDASLEAGRSALAEISDRQSWRLDLHGVVRAAAE 159 Query: 135 ALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLH 194 A R +AP FW + G G + L A + ++ Sbjct: 160 AGARDLARRVVAPAFWYALLGMPGMLAWTVADALAATIGHDTPRYADFGAAAARTGRIMV 219 Query: 195 VLDWVPVRLAG 205 W+P RL G Sbjct: 220 ---WLPARLTG 227 >UniRef50_A8ZY32 Cobalamin biosynthesis protein CobD n=2 Tax=Desulfobacteraceae RepID=A8ZY32_DESOH Length = 321 Score = 40.1 bits (92), Expect = 0.094, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 8/183 (4%) Query: 26 HRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLL---VWLLIGLLCI 82 + LE FR++ + I + T+L+ + L + + +++ CI Sbjct: 43 NTLEPVFRKLSRNPVLAGGLFAIALIAGTWLVALFMLAFLEEISPAVRVAGEVVLLFFCI 102 Query: 83 GAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFR 142 A + A L ++ D + L + V ++ ++ + Sbjct: 103 SARSLEKGARAVLVPLAKGDIYRARE-GLCLIVGRDVHRLDEKGVARATVETVAENLVDG 161 Query: 143 FYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVR 202 ++PLF+ ++GG + Y + + + + +++P R Sbjct: 162 -VISPLFFAVIGGVP---LALAYKMVNTLDSMVGYKDDRYEAFGKASARIDDGANFIPAR 217 Query: 203 LAG 205 L+ Sbjct: 218 LSV 220 >UniRef50_Q75FR2 Cobalamin biosynthesis protein cobD n=4 Tax=Leptospira RepID=COBD_LEPIC Length = 315 Score = 40.1 bits (92), Expect = 0.095, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 61/218 (27%), Gaps = 12/218 (5%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF--SLGRTLGMTIIAMGVTFLLLRAL 61 + L+ LI L + +L + S G+ + + Sbjct: 7 ISILVDLILGDPKDLPHPVRAIGKLARALEKFFRNNCSSEEIAGILTSCLVYLISFIIPF 66 Query: 62 QGVLFN-----VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 V F + L+ ++I I + H A + + ++ + Sbjct: 67 LSVQFANQLHWILGELLSIMIIYTTIAIRDMIDHSKEVYDALVQTNLPLARKKVSKI-VA 125 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 + +++ + PLF+ + G GP M Y + Sbjct: 126 RDTENLSESEIIRACVESTAENLVDGI-TTPLFYAVFG---GPAWAMLYRSINTLDSLFG 181 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG 214 + R S + + +++P R+ + L Sbjct: 182 YKNKKYLRFGSFPARIDDLANYLPARITSYILVLSSLF 219 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AE14 Protein ampE n=163 Tax=Enterobacteriaceae RepID=... 213 6e-54 UniRef50_B9Z6F4 Cobalamin biosynthesis protein CbiB n=2 Tax=Chro... 202 9e-51 UniRef50_Q15QI4 Signaling modulator of AmpD, AmpE n=1 Tax=Pseudo... 200 3e-50 UniRef50_A0Y6F9 Predicted inner membrane protein n=3 Tax=Alterom... 195 1e-48 UniRef50_C1DBX6 Probable cobalamin biosynthesis transmembrane pr... 195 2e-48 UniRef50_UPI0001AEC65C regulatory protein AmpE n=1 Tax=Alteromon... 190 6e-47 UniRef50_B4RWU8 Putative ampicillin resistance protein n=1 Tax=A... 188 2e-46 UniRef50_Q3SJZ9 Putative cobalamin biosynthesis transmembrane pr... 187 3e-46 UniRef50_Q2SXZ6 CobD/CbiB family protein, putative n=62 Tax=Burk... 185 1e-45 UniRef50_Q5R0P3 Membrane protein required for beta-lactamase ind... 185 1e-45 UniRef50_A1S2H8 Signaling modulator of AmpD, AmpE n=20 Tax=Shewa... 184 3e-45 UniRef50_C6P7J7 Cobalamin biosynthesis protein CbiB n=1 Tax=Side... 184 3e-45 UniRef50_B3R5E5 Putative COBALAMIN BIOSYNTHESIS TRANSMEMBRANE PR... 184 4e-45 UniRef50_UPI0000E0F474 regulatory protein AmpE n=1 Tax=Glaciecol... 181 2e-44 UniRef50_A3WNI1 Membrane protein required for beta-lactamase ind... 179 1e-43 UniRef50_A1K7I5 Cobalamin biosynthesis transmembrane protein n=5... 178 1e-43 UniRef50_A4SW78 Cobalamin biosynthesis protein CbiB n=2 Tax=Poly... 177 3e-43 UniRef50_B7VKP2 Cobalamin biosynthesis protein CobD/CbiB n=2 Tax... 176 6e-43 UniRef50_Q47US3 Putative inner membrane protein AmpE n=1 Tax=Col... 176 9e-43 UniRef50_A6W1J9 Cobalamin biosynthesis protein CobD n=2 Tax=Mari... 174 2e-42 UniRef50_A1WB47 Cobalamin biosynthesis protein CbiB n=2 Tax=Coma... 174 3e-42 UniRef50_A0YEZ0 Membrane protein required for beta-lactamase ind... 172 1e-41 UniRef50_C3XB65 Cobalamin biosynthesis protein CobD n=2 Tax=Oxal... 172 2e-41 UniRef50_A6FBG6 AmpE protein n=1 Tax=Moritella sp. PE36 RepID=A6... 170 4e-41 UniRef50_Q2S8B8 Cobalamin biosynthesis protein CobD n=4 Tax=Gamm... 170 7e-41 UniRef50_C6XB70 Cobalamin biosynthesis protein CbiB n=1 Tax=Meth... 167 3e-40 UniRef50_A1WEQ3 Cobalamin biosynthesis protein CbiB n=14 Tax=Bur... 167 5e-40 UniRef50_A6SVI9 Cobalamin biosynthesis protein CobD n=2 Tax=Oxal... 167 5e-40 UniRef50_A8FV25 CobD; cobalamin biosynthetic protein n=2 Tax=She... 165 1e-39 UniRef50_B8GLX9 Signaling modulator of AmpD, AmpE n=1 Tax=Thioal... 165 2e-39 UniRef50_A4VJ38 Cobalamin biosynthesis protein cobD n=67 Tax=Pro... 164 2e-39 UniRef50_C6BBL8 Cobalamin biosynthesis protein CobD n=61 Tax=Pro... 164 3e-39 UniRef50_Q2SKR8 Membrane protein required for beta-lactamase ind... 162 2e-38 UniRef50_C7I5F9 Adenosylcobinamide-phosphate synthase n=1 Tax=Th... 161 3e-38 UniRef50_Q1YSB1 Inner membrane protein AmpE n=1 Tax=gamma proteo... 160 4e-38 UniRef50_A4BU75 Putative uncharacterized protein n=1 Tax=Nitroco... 159 8e-38 UniRef50_Q21ME0 Signaling modulator of AmpD, AmpE n=2 Tax=Altero... 158 1e-37 UniRef50_Q12IR5 Signaling modulator of AmpD, AmpE n=1 Tax=Shewan... 158 2e-37 UniRef50_C5V172 Cobalamin biosynthesis protein CbiB n=1 Tax=Gall... 155 1e-36 UniRef50_A4BKE4 Membrane protein required for beta-lactamase ind... 154 3e-36 UniRef50_Q1GYJ0 Adenosylcobinamide-phosphate synthase n=1 Tax=Me... 153 5e-36 UniRef50_A1TXA8 Adenosylcobinamide-phosphate synthase n=2 Tax=Ma... 153 6e-36 UniRef50_B0K304 Cobalamin biosynthesis protein CobD n=7 Tax=Ther... 148 3e-34 UniRef50_Q1MZQ5 Membrane protein required for beta-lactamase ind... 143 5e-33 UniRef50_Q5ZVD4 Inner membrane protein AmpE n=6 Tax=Legionella R... 142 1e-32 UniRef50_B3PIN7 Cobalamin biosynthesis protein CobD n=1 Tax=Cell... 142 1e-32 UniRef50_A1WY59 Adenosylcobinamide-phosphate synthase n=2 Tax=Pr... 141 3e-32 UniRef50_A6F578 Membrane protein required for beta-lactamase ind... 140 8e-32 UniRef50_C9KJ54 Cobalamin biosynthesis protein CobD n=1 Tax=Mits... 139 1e-31 UniRef50_C7RA12 Signaling modulator of AmpD, AmpE n=1 Tax=Kangie... 138 2e-31 UniRef50_Q6ALU7 Cobalamin biosynthesis protein cobD n=1 Tax=Desu... 138 2e-31 UniRef50_B2UXD7 Cobalamin biosynthesis protein CobD n=4 Tax=Clos... 138 3e-31 UniRef50_C9RHK7 Cobalamin biosynthesis protein CobD n=3 Tax=Meth... 136 6e-31 UniRef50_B8KJ07 Putative uncharacterized protein n=1 Tax=gamma p... 136 9e-31 UniRef50_B7RSR6 Putative uncharacterized protein n=1 Tax=marine ... 136 9e-31 UniRef50_A6UUW7 Probable cobalamin biosynthesis protein cobD n=9... 135 1e-30 UniRef50_C4RPJ0 Cobalamin biosynthesis protein cobD (Fragment) n... 134 3e-30 UniRef50_Q73JM8 Cobalamin biosynthesis protein CobD n=1 Tax=Trep... 133 5e-30 UniRef50_A1TZ82 Signaling modulator of AmpD, AmpE n=2 Tax=Marino... 133 5e-30 UniRef50_Q12UB2 Adenosylcobinamide-phosphate synthase n=4 Tax=Me... 133 6e-30 UniRef50_O27460 Probable cobalamin biosynthesis protein cobD n=1... 133 6e-30 UniRef50_Q15WT1 Adenosylcobinamide-phosphate synthase n=1 Tax=Ps... 133 9e-30 UniRef50_B2A0G4 Cobalamin biosynthesis protein CobD n=1 Tax=Natr... 133 9e-30 UniRef50_A8MIW5 Cobalamin biosynthesis protein CobD n=3 Tax=Clos... 132 1e-29 UniRef50_A5VM86 Adenosylcobinamide-phosphate synthase n=8 Tax=La... 132 2e-29 UniRef50_B1HXM0 Cobalamin biosynthesis protein n=2 Tax=Bacillace... 131 2e-29 UniRef50_A4A5I5 Transmembrane protein n=1 Tax=Congregibacter lit... 130 5e-29 UniRef50_A9KMP3 Cobalamin biosynthesis protein CobD n=1 Tax=Clos... 130 7e-29 UniRef50_B7ATE5 Putative uncharacterized protein n=1 Tax=Bactero... 129 8e-29 UniRef50_A9KED3 Beta-lactamase induction protein n=6 Tax=Coxiell... 127 4e-28 UniRef50_B3PLN3 Putative AmpE n=1 Tax=Cellvibrio japonicus Ueda1... 127 4e-28 UniRef50_Q3ZX56 Cobalamin biosynthesis protein cobD n=5 Tax=Deha... 127 5e-28 UniRef50_C4V0Y6 Cobalamin biosynthesis protein CbiB n=2 Tax=Sele... 125 2e-27 UniRef50_A0LJ23 Adenosylcobinamide-phosphate synthase n=1 Tax=Sy... 125 2e-27 UniRef50_A6X053 Cobalamin biosynthesis protein cobD n=46 Tax=Rhi... 124 4e-27 UniRef50_A7HMT4 Cobalamin biosynthesis protein CobD n=4 Tax=Ther... 122 1e-26 UniRef50_Q3A7A1 Adenosylcobinamide-phosphate synthase n=2 Tax=De... 121 2e-26 UniRef50_C3MJX6 Cobalamin biosynthesis protein CobD n=12 Tax=Sul... 121 3e-26 UniRef50_A8PLW8 Transmembrane protein n=1 Tax=Rickettsiella gryl... 121 3e-26 UniRef50_C1DPK8 Inner membrane protein n=51 Tax=Proteobacteria R... 120 6e-26 UniRef50_Q97CS1 Probable cobalamin biosynthesis protein cobD n=2... 119 1e-25 UniRef50_D0L1E9 Signaling modulator of AmpD, AmpE n=1 Tax=Haloth... 118 2e-25 UniRef50_Q1GDE9 Cobalamin biosynthesis protein cobD n=19 Tax=Rho... 117 5e-25 UniRef50_Q5JI24 Probable cobalamin biosynthesis protein cobD n=9... 116 8e-25 UniRef50_C1TM10 Cobalamin biosynthesis protein CobD n=1 Tax=Deth... 116 1e-24 UniRef50_UPI0001698E73 adenosylcobinamide-phosphate synthase n=1... 116 1e-24 UniRef50_Q52683 Cobalamin biosynthesis protein cobD n=6 Tax=Alph... 115 1e-24 UniRef50_Q15YJ2 Adenosylcobinamide-phosphate synthase n=1 Tax=Ps... 115 2e-24 UniRef50_A1AMC9 Cobalamin biosynthesis protein cobD n=13 Tax=Bac... 115 2e-24 UniRef50_A6GTD6 Adenosylcobinamide-phosphate synthase n=1 Tax=Li... 115 3e-24 UniRef50_B2RK82 Cobalamin biosynthesis protein n=29 Tax=Bacteria... 111 3e-23 UniRef50_O28933 Probable cobalamin biosynthesis protein cobD n=1... 110 5e-23 UniRef50_B5JDR8 Cobalamin biosynthesis protein CobD n=1 Tax=Verr... 106 9e-22 UniRef50_A0Z7A0 AmpE protein n=2 Tax=unclassified Gammaproteobac... 103 6e-21 UniRef50_Q3ILJ8 Putative cobalamin biosynthesis protein n=2 Tax=... 103 7e-21 UniRef50_Q87D61 Transmembrane protein n=21 Tax=Bacteria RepID=Q8... 98 2e-19 UniRef50_Q7WVE4 Putative AmpE (Fragment) n=1 Tax=Xenorhabdus nem... 73 2e-11 Sequences not found previously or not previously below threshold: UniRef50_C7NCQ6 Cobalamin biosynthesis protein CobD n=9 Tax=Fuso... 140 5e-32 UniRef50_C6PE10 Cobalamin biosynthesis protein CobD n=3 Tax=Ther... 136 7e-31 UniRef50_C9MYC2 Cobalamin biosynthesis protein CobD n=3 Tax=Fuso... 134 3e-30 UniRef50_Q75FR2 Cobalamin biosynthesis protein cobD n=4 Tax=Lept... 133 6e-30 UniRef50_Q180T1 Cobalamin biosynthesis protein n=9 Tax=Clostridi... 131 3e-29 UniRef50_A4J805 Adenosylcobinamide-phosphate synthase n=2 Tax=Cl... 131 3e-29 UniRef50_Q3AE10 Cobalamin biosynthesis protein CobD n=1 Tax=Carb... 131 4e-29 UniRef50_C0GDW1 Cobalamin biosynthesis protein CobD n=1 Tax=Deth... 130 8e-29 UniRef50_A9A601 Cobalamin biosynthesis protein CobD n=4 Tax=Thau... 129 1e-28 UniRef50_C0Z7H8 Cobalamin biosynthesis protein n=1 Tax=Brevibaci... 129 1e-28 UniRef50_Q897L3 Cobalamin biosynthesis protein cobD n=13 Tax=Clo... 129 1e-28 UniRef50_A6TU69 Cobalamin biosynthesis protein CobD n=1 Tax=Alka... 129 1e-28 UniRef50_B8I0R7 Cobalamin biosynthesis protein CobD n=4 Tax=Clos... 127 5e-28 UniRef50_Q2NDZ9 CobD n=1 Tax=Methanosphaera stadtmanae DSM 3091 ... 126 8e-28 UniRef50_D1BMI1 Cobalamin biosynthesis protein CobD n=4 Tax=Veil... 125 1e-27 UniRef50_UPI00016C0C98 cobalamin biosynthesis protein CobD n=1 T... 125 1e-27 UniRef50_C5D3K3 Cobalamin biosynthesis protein CobD n=3 Tax=Baci... 125 1e-27 UniRef50_C7PI39 Cobalamin biosynthesis protein CobD n=6 Tax=Bact... 125 2e-27 UniRef50_B0TIK7 Cobalamin biosynthesis protein cbib/cobd n=4 Tax... 124 3e-27 UniRef50_Q9KCI3 Cobalamin biosynthesis protein cobD n=4 Tax=Baci... 123 5e-27 UniRef50_C9LWB5 Cobalamin biosynthesis protein CobD n=1 Tax=Sele... 123 8e-27 UniRef50_C6L9T1 Cobalamin biosynthesis protein CobD n=5 Tax=Clos... 122 1e-26 UniRef50_C7N893 Cobalamin biosynthesis protein CobD n=4 Tax=Bact... 121 2e-26 UniRef50_B8FH76 Cobalamin biosynthesis protein CobD n=1 Tax=Desu... 121 3e-26 UniRef50_Q939K6 CbiB n=6 Tax=Actinomycetales RepID=Q939K6_PROFR 121 3e-26 UniRef50_A3CL57 Cobalamin biosynthesis protein cobD n=1 Tax=Stre... 120 7e-26 UniRef50_C1SKG0 Cobalamin biosynthesis protein CobD n=1 Tax=Deni... 120 7e-26 UniRef50_Q8KDV4 Cobalamin biosynthesis protein cobD n=11 Tax=Chl... 120 8e-26 UniRef50_Q1Q2T8 Similar to cobalamin biosynthesis protein cbiB n... 119 1e-25 UniRef50_A9MLR0 Cobalamin biosynthesis protein cbiB n=55 Tax=Ent... 119 1e-25 UniRef50_C4Z7P3 Adenosylcobinamide-phosphate synthase CobD n=8 T... 119 1e-25 UniRef50_B5YL82 Cobalamin biosynthesis protein CobD n=1 Tax=Ther... 118 2e-25 UniRef50_C9S015 Cobalamin biosynthesis protein CobD n=5 Tax=Baci... 118 2e-25 UniRef50_B9KKH9 Adenosylcobinamide-phosphate synthase n=3 Tax=Rh... 118 2e-25 UniRef50_B8G243 Cobalamin biosynthesis protein CobD n=2 Tax=Desu... 118 3e-25 UniRef50_C0ERM5 Putative uncharacterized protein n=1 Tax=Eubacte... 116 7e-25 UniRef50_Q720N7 Cobalamin biosynthesis protein cobD n=17 Tax=Lis... 116 8e-25 UniRef50_Q97LH9 Cobalamin biosynthesis protein cobD n=21 Tax=Bac... 116 8e-25 UniRef50_D2MJU6 Cobalamin (Vitamin B12) biosynthesis CbiB n=1 Ta... 115 2e-24 UniRef50_A5UMP3 Cobalamin biosynthesis protein D, CobD n=3 Tax=M... 114 4e-24 UniRef50_A5TUS7 Cobalamin biosynthesis protein CbiB n=8 Tax=Fuso... 113 5e-24 UniRef50_Q486X9 Putative cobalamin biosynthesis protein D n=2 Ta... 113 6e-24 UniRef50_C4ZB09 Cobalamin biosynthesis protein CobD n=3 Tax=Clos... 113 6e-24 UniRef50_A3DK66 Adenosylcobinamide-phosphate synthase n=3 Tax=Cl... 112 1e-23 UniRef50_A7I470 Cobalamin biosynthesis protein CobD n=5 Tax=Meth... 111 2e-23 UniRef50_A1UIE7 Adenosylcobinamide-phosphate synthase n=31 Tax=A... 111 3e-23 UniRef50_D1B938 Cobalamin biosynthesis protein CobD n=1 Tax=Ther... 111 3e-23 UniRef50_C4LHY4 Cobalamin biosynthesis protein n=5 Tax=Corynebac... 108 2e-22 UniRef50_Q0C212 Cobalamin biosynthesis protein CobD n=8 Tax=Rhod... 108 2e-22 UniRef50_C6D295 Cobalamin biosynthesis protein CobD n=4 Tax=Firm... 106 9e-22 UniRef50_C6BSX1 Cobalamin biosynthesis protein CobD n=2 Tax=Desu... 106 1e-21 UniRef50_A5ZUK0 Putative uncharacterized protein n=2 Tax=Clostri... 105 1e-21 UniRef50_C0GMN8 Cobalamin biosynthesis protein CobD n=1 Tax=Desu... 105 1e-21 UniRef50_A8ZY32 Cobalamin biosynthesis protein CobD n=2 Tax=Desu... 105 1e-21 UniRef50_Q7VEN1 Cobalamin biosynthesis protein cobD n=24 Tax=Act... 105 2e-21 UniRef50_C8W3Q8 Cobalamin biosynthesis protein CobD n=1 Tax=Desu... 105 2e-21 UniRef50_D1WX30 Cobalamin biosynthesis protein CobD n=7 Tax=Stre... 105 3e-21 UniRef50_D1PMB8 Cobalamin biosynthesis protein CobD n=7 Tax=Bact... 104 3e-21 UniRef50_A1HPW4 Cobalamin biosynthesis protein CobD n=1 Tax=Ther... 104 4e-21 UniRef50_B9QU45 Cobalamin biosynthesis protein CobD n=4 Tax=Rhod... 104 4e-21 UniRef50_Q3ZY68 Cobalamin biosynthesis protein n=5 Tax=Dehalococ... 103 5e-21 UniRef50_A7C0E6 Cobalamin biosynthesis protein CbiB n=1 Tax=Begg... 103 5e-21 UniRef50_Q2GBK1 Adenosylcobinamide-phosphate synthase n=4 Tax=Al... 103 8e-21 UniRef50_C9R8D5 Cobalamin biosynthesis protein CobD n=1 Tax=Ammo... 103 1e-20 UniRef50_Q0W1P4 Adenosylcobinamide-phosphate synthase n=2 Tax=Eu... 102 2e-20 UniRef50_Q0RLS4 Cobalamin biosynthesis protein cobD n=10 Tax=Act... 101 2e-20 UniRef50_UPI0001C41EAA cobalamin biosynthesis protein CbiB n=1 T... 100 8e-20 UniRef50_C9M653 Cobalamin biosynthesis protein CobD n=1 Tax=Jonq... 100 9e-20 UniRef50_A8MCQ2 Cobalamin biosynthesis protein CbiB n=1 Tax=Cald... 100 1e-19 UniRef50_A8RKD6 Putative uncharacterized protein n=4 Tax=Clostri... 100 1e-19 UniRef50_C3MDQ7 Cobalamin biosynthesis protein cobD n=25 Tax=Pro... 99 1e-19 UniRef50_C8S6M2 Cobalamin biosynthesis protein CobD n=1 Tax=Ferr... 99 2e-19 UniRef50_Q2JIW3 Cobalamin biosynthesis protein CobD n=3 Tax=Cyan... 99 2e-19 UniRef50_A0B5W6 Probable cobalamin biosynthesis protein cobD n=1... 98 2e-19 UniRef50_P74475 Cobalamin biosynthesis protein cobD n=9 Tax=Cyan... 98 3e-19 UniRef50_A5UQT3 Adenosylcobinamide-phosphate synthase n=8 Tax=Ba... 98 3e-19 UniRef50_B1I5R1 Cobalamin biosynthesis protein CobD n=1 Tax=Cand... 98 3e-19 UniRef50_B9JXA3 Cobalamin biosynthesis protein CobD n=2 Tax=Rhiz... 96 1e-18 UniRef50_B6BH68 Cobalamin biosynthesis protein CobD n=1 Tax=Camp... 95 2e-18 UniRef50_UPI000038E15E cobalamin biosynthesis protein n=1 Tax=Fe... 95 2e-18 UniRef50_C1A5M4 Cobalamin biosynthesis protein CobD n=1 Tax=Gemm... 95 3e-18 UniRef50_B0BZ20 Cobalamin biosynthesis protein CbiB n=19 Tax=Cya... 94 6e-18 UniRef50_Q9RZV1 Cobalamin biosynthesis protein CobD, putative n=... 93 7e-18 UniRef50_C8QWR6 Cobalamin biosynthesis protein CobD n=1 Tax=Desu... 93 1e-17 UniRef50_B2UM56 Cobalamin biosynthesis protein CobD n=1 Tax=Akke... 93 1e-17 UniRef50_B2IE17 Cobalamin biosynthesis protein CobD n=16 Tax=Alp... 92 1e-17 UniRef50_A9GM39 Cobalamin biosynthesis protein cobD n=2 Tax=Bact... 91 4e-17 UniRef50_Q3ZWV9 Cobalamin biosynthesis protein n=3 Tax=Dehalococ... 90 6e-17 UniRef50_Q729W0 Cobalamin biosynthesis protein CobD, putative n=... 90 8e-17 UniRef50_C7M3A5 Cobalamin biosynthesis protein CobD n=1 Tax=Acid... 90 1e-16 UniRef50_Q0FDG7 Cobalamin biosynthesis protein CobD n=1 Tax=Rhod... 90 1e-16 UniRef50_UPI0001C336B8 adenosylcobinamide-phosphate synthase n=1... 89 1e-16 UniRef50_Q1NTQ0 Cobalamin biosynthesis protein CbiB n=2 Tax=delt... 89 2e-16 UniRef50_Q2WAM8 Cobalamin biosynthesis protein CobD/CbiB n=7 Tax... 88 3e-16 UniRef50_Q8TV77 Cobalamin biosynthesis protein CobD/CbiB n=1 Tax... 87 8e-16 UniRef50_B8DL86 Cobalamin biosynthesis protein CbiB n=2 Tax=Desu... 87 9e-16 UniRef50_A1TME6 Adenosylcobinamide-phosphate synthase n=8 Tax=ce... 86 1e-15 UniRef50_A9BVS9 Cobalamin biosynthesis protein CobD n=10 Tax=Pro... 85 2e-15 UniRef50_A3MWE1 Adenosylcobinamide-phosphate synthase n=1 Tax=Py... 85 4e-15 UniRef50_C6HZY1 Cobalamin biosynthesis protein CobD/CbiB n=1 Tax... 84 5e-15 UniRef50_A8I5C2 Cobalamin biosynthesis protein n=10 Tax=Rhizobia... 83 7e-15 UniRef50_B5INX6 Cobalamin biosynthesis protein CobD n=1 Tax=Cyan... 83 7e-15 UniRef50_Q1Z1A5 Adenosylcobinamide-phosphate synthase n=4 Tax=Vi... 83 7e-15 UniRef50_A4CCJ7 Putative cobalamin biosynthesis protein n=1 Tax=... 83 8e-15 UniRef50_D2L565 Cobalamin biosynthesis protein CobD n=1 Tax=Desu... 83 9e-15 UniRef50_B6WXS0 Putative uncharacterized protein n=1 Tax=Desulfo... 83 1e-14 UniRef50_C7LUP6 Cobalamin biosynthesis protein CobD n=2 Tax=Desu... 82 2e-14 UniRef50_Q319H2 Adenosylcobinamide-phosphate synthase n=8 Tax=Pr... 78 3e-13 UniRef50_C5SBC8 Cobalamin biosynthesis protein CobD n=1 Tax=Allo... 78 3e-13 UniRef50_Q7VAR7 Cobalamin biosynthesis protein CobD/CbiB n=2 Tax... 77 7e-13 UniRef50_D0I861 Adenosylcobinamide-phosphate synthase n=1 Tax=Gr... 77 9e-13 UniRef50_A8H190 Cobalamin biosynthesis protein CbiB n=2 Tax=Shew... 76 1e-12 UniRef50_Q6L0V6 Cobalmin biosynthesis protein n=1 Tax=Picrophilu... 76 2e-12 UniRef50_A5GRI7 Cobalamin biosynthesis protein CobD/CbiB n=1 Tax... 76 2e-12 UniRef50_Q07YV8 CobD-related protein n=1 Tax=Shewanella frigidim... 76 2e-12 UniRef50_A3QBP9 Cobalamin biosynthesis protein CbiB n=3 Tax=Shew... 76 2e-12 UniRef50_Q9YAA0 Probable cobalamin biosynthesis protein cobD n=1... 75 2e-12 UniRef50_C7MVP2 Cobalamin biosynthesis protein cobD/CbiB n=2 Tax... 75 2e-12 UniRef50_A3EVG3 Cobalamin biosynthesis protein (CbiB) n=2 Tax=Le... 75 3e-12 UniRef50_Q12KE5 CobD-related protein n=4 Tax=Shewanella RepID=Q1... 75 4e-12 UniRef50_UPI0001AEBF52 adenosylcobinamide-phosphate synthase n=1... 74 4e-12 UniRef50_Q18KB2 Cobalamine biosynthesis protein (Adenosylcobinam... 74 6e-12 UniRef50_B7VJ20 Cobalamin biosynthesis protein n=54 Tax=Vibriona... 73 9e-12 UniRef50_D0Z030 Adenosylcobinamide-phosphate synthase n=1 Tax=Ph... 73 1e-11 UniRef50_B8CQP3 CobD-like protein n=1 Tax=Shewanella piezotolera... 72 2e-11 UniRef50_B1YBA3 Cobalamin biosynthesis protein CbiB n=2 Tax=Ther... 72 3e-11 UniRef50_B6IPQ1 Cobalamin biosynthesis protein CobD n=1 Tax=Rhod... 71 5e-11 UniRef50_Q3ALC6 Cobalamin biosynthesis protein CobD n=13 Tax=Cya... 70 6e-11 UniRef50_Q47UY6 CobD/cbiB family protein n=1 Tax=Colwellia psych... 70 9e-11 UniRef50_Q0HG71 Cobalamin biosynthesis protein CbiB n=9 Tax=Shew... 69 2e-10 UniRef50_Q46JF5 Adenosylcobinamide-phosphate synthase n=2 Tax=Pr... 68 3e-10 UniRef50_Q0VRX9 Inner membrane protein AmpE n=2 Tax=Alcanivorax ... 67 5e-10 UniRef50_D1N4N3 Cobalamin biosynthesis protein CobD n=1 Tax=Vict... 67 5e-10 UniRef50_B4RX46 Adenosylcobinamide-phosphate synthase n=1 Tax=Al... 67 6e-10 UniRef50_Q5E2X2 Adenosylcobinamide-phosphate synthase n=3 Tax=Vi... 67 7e-10 UniRef50_Q5R043 Cobalamin biosynthesis membrane protein n=1 Tax=... 67 8e-10 UniRef50_C0G2L5 Cobalamin biosynthesis protein CbiB n=2 Tax=Halo... 65 3e-09 UniRef50_Q1ZH13 Adenosylcobinamide-phosphate synthase n=1 Tax=Ps... 64 6e-09 UniRef50_Q8ZZ88 Cobalamin biosynthesis protein B (CbiB) n=1 Tax=... 63 8e-09 UniRef50_B8J3Z1 Cobalamin biosynthesis protein CbiB n=1 Tax=Desu... 63 9e-09 UniRef50_D2RXI0 Cobalamin biosynthesis protein CobD n=1 Tax=Halo... 61 3e-08 UniRef50_Q53WA0 Cobalamin biosynthesis protein CbiB n=2 Tax=Ther... 60 1e-07 UniRef50_C0R144 Cobalamin biosynthesis protein B n=3 Tax=Brachys... 59 1e-07 UniRef50_B9LRL4 Cobalamin biosynthesis protein CobD n=7 Tax=Halo... 57 6e-07 UniRef50_UPI0000383675 COG1270: Cobalamin biosynthesis protein C... 50 8e-05 UniRef50_A6FEH0 Putative cobalamin biosynthesis protein n=1 Tax=... 48 4e-04 UniRef50_A4SP54 Cobalamin biosynthesis protein CbiB n=2 Tax=Aero... 41 0.030 UniRef50_B7AB17 Cobalamin biosynthesis protein CobD n=1 Tax=Ther... 41 0.043 UniRef50_A3YE32 Nicotinate-nucleotide pyrophosphorylase n=1 Tax=... 41 0.065 >UniRef50_P0AE14 Protein ampE n=163 Tax=Enterobacteriaceae RepID=AMPE_ECOLI Length = 284 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 284/284 (100%), Positives = 284/284 (100%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA Sbjct: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 Query: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP Sbjct: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 Query: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT Sbjct: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 Query: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA 240 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA Sbjct: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA 240 Query: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV Sbjct: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 >UniRef50_B9Z6F4 Cobalamin biosynthesis protein CbiB n=2 Tax=Chromobacterium group RepID=B9Z6F4_9NEIS Length = 306 Score = 202 bits (515), Expect = 9e-51, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 99/309 (32%), Gaps = 30/309 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGR--TLGMTIIAMGVTFLLL 58 MTL + + L E+L LG ++ + ++ G+ + LL Sbjct: 1 MTLLSLIFALALEQLRPLGNRNRVWLLFTRYANHLERNLNAGYNRHGVMAWLAAMLPPLL 60 Query: 59 RALQGVLF-----NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 AL G V L +L+ L +G + A + Sbjct: 61 IALGGYYLLAAVSPVLGLAWNVLVLYLTMGFRHFSSSFSEISVALTEGRDFDARQTLAHW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 T ++ ++ ++R +FW ++ GP + Y Sbjct: 121 TG-QPTAELSVNEISRLSIEQGVVD-SYRHVFGTMFWFLIL--PGPAGAVLYRLSYILSQ 176 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 + + LDW+PVRL + +A++G E AL W + + + Sbjct: 177 KWGERSSGDDLFGRFAARAMSWLDWIPVRLTAISFAIMGDFEDALYCWRSQARTWGHYAH 236 Query: 234 QVLTRLAQFSLARE-------------------PHVDKVETPKAAVSMAKKTSFVVVVVI 274 +L A +L + + K+AV + +++ + + VI Sbjct: 237 GILLASAAGALGVKLGDPVRQDYTIKFRPELGLGEESDPDYLKSAVGLVWRSALLWLFVI 296 Query: 275 ALLTIYGAL 283 L+++ L Sbjct: 297 LLISVAAQL 305 >UniRef50_Q15QI4 Signaling modulator of AmpD, AmpE n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15QI4_PSEA6 Length = 270 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 24/288 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHR----LEAFFRRVKHFSLGRTLGMTIIAMGVTFL 56 MTL + LLVL ER+ +WQ D L A+ +R S L + + + + Sbjct: 1 MTLISLLLVLFVERVTTKSRYWQADFYSTKYLAAWQKRDGLSSDTSLLFLLVAIVIPPVI 60 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 + L + + ++ I ++C+G VR Y YL AA+R D A + ++ Sbjct: 61 IFCFLSFAVGQIIAFIISTTILMVCMGCPSVRATYKCYLQAANRGDMEACSLYEDQIC-- 118 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 D + L+W N+R Y A + + ++ G G V + + Sbjct: 119 -------DREQISATFGQNLVWQNYRHYAAVILFFVLLGAPGAVFYVLARAV-------- 163 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 Q+ + ++HVLDW+PVR+ + + L+GH +ALP W S ++L Sbjct: 164 --QSQMAFENKTANQLMHVLDWLPVRITSLGFLLVGHFSRALPIWLGHFLTPSISAKKLL 221 Query: 237 TRLAQFSLAREP-HVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 +++ + EP + E P V +AK+ ++ VIA LT+ G L Sbjct: 222 VDVSRAAEDIEPNERNCTEEPCTLVKLAKRNILFLMAVIAGLTLGGWL 269 >UniRef50_A0Y6F9 Predicted inner membrane protein n=3 Tax=Alteromonadales RepID=A0Y6F9_9GAMM Length = 283 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 116/289 (40%), Gaps = 13/289 (4%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL-----GMTIIAMGVTF 55 M L + +L LI ERL +WQ+ + + +R L G I Sbjct: 1 MILVSIILALILERLGARANYWQISYYANGYLKRSHGLLASNGLFSSAMGFLIWLFLPVV 60 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 + F + L + + + L+C G K R Y AYL A +R+D A + A ++ Sbjct: 61 AMACIYNLSEFVLWELAINIAVLLVCFGCAKQRALYKAYLNALTRDDGTAASLYALQMGQ 120 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 ++++ L W+NFRFY A +FW +V G G V Sbjct: 121 KR-----TEDQKGGETFGQTLAWVNFRFYCAVIFWFVVLGAPGAVLYALVRTFADLV--R 173 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQV 235 ++ + I +L LDW+P R+A Y +IG+ K W DF + +V Sbjct: 174 DNHKVIFAKHFKLIHKLLFWLDWLPARIASFGYLVIGNFNKGTSCWLHYALDFSSPNRKV 233 Query: 236 LTRLAQFSLAREPHVD-KVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 +T A + E + + K+ +V+IALLT++G L Sbjct: 234 VTYTALAAEQVEKRYYGCTYEATCMIKLVKRNVLFYLVLIALLTLFGGL 282 >UniRef50_C1DBX6 Probable cobalamin biosynthesis transmembrane protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBX6_LARHH Length = 307 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 57/311 (18%), Positives = 99/311 (31%), Gaps = 31/311 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLG--RTLGMTIIAMGVTFLLL 58 MTL + L+ L E+L LG +L + R++ G+ + V + Sbjct: 1 MTLISILIALALEQLRPLGSRNRLLLHFTRYANRLERNLNAGESRHGLLAWLLAVVPFVA 60 Query: 59 RALQGVL-----FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 A V LL + + L +G A + H G Sbjct: 61 LAYGIYAALYQVTPVLALLWNVAVLYLTMGFRHFSGAITDISKALADGRVHDARAALGRW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG-GTWGPVTLMGYAFLRAWQ 172 + ++ + +R A LFW +V G G V L +Q Sbjct: 121 SG-QSTSELEVNEISRLTIEQGVTD-AYRHVFATLFWFVVLPGPAGAVLYRLSCML--YQ 176 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 W R P + + LDW+PVRL + +A++G E A+ W A + Sbjct: 177 KWGLREGQPGDQFGLPARKLCEWLDWIPVRLTSISFAVMGDFEDAIYCWRAQAQAWGNRS 236 Query: 233 YQVLTRLAQFSLARE-------------------PHVDKVETPKAAVSMAKKTSFVVVVV 273 + +L A ++ + K A+ + + + + V Sbjct: 237 WGILLASAAGAIGVRLGDPLRQDYTVKYRPELGVGDEADPDYLKRAIGLVWRALVIWLFV 296 Query: 274 IALLTIYGALV 284 I L ++ L Sbjct: 297 ILLFSVARILA 307 >UniRef50_UPI0001AEC65C regulatory protein AmpE n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC65C Length = 300 Score = 190 bits (482), Expect = 6e-47, Method: Composition-based stats. Identities = 61/294 (20%), Positives = 112/294 (38%), Gaps = 28/294 (9%) Query: 13 ERLFKLGEHWQLDHRLEAFFRRV---------------KHFSLGRTLGMTIIAMGVTFLL 57 ERL +W ++ + + + + + + +L Sbjct: 13 ERLITKTPNWHIEKYAAQYRAFLQDKGLIKFQEGNEDEEGSKKVSSTALYFYLLLPAVVL 72 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 VL T + +I +CIG +R Y ++L AA R D A + +L Sbjct: 73 GAIEYWVLGAFLTFIEQSIILFICIGCPALRAVYKSFLNAADRGDLQACSMYTDQLGHCA 132 Query: 118 GVPAGCDEREYL-RELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 + L W+N++ Y A + W I G G + + R+ L Sbjct: 133 SQSDSDGSAGTEGKTFGQHLTWLNYQHYAAVMLWFIAFGAPGALFY---SLSRSTTEALC 189 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 P L++ ++ LD++PVR+ ++GH +ALP W F Y VL Sbjct: 190 DANHP---LKAAAGRLMFALDYIPVRVTAFGMLMMGHFSRALPEWIKYALQFDVPAYDVL 246 Query: 237 TRLAQFSLAREPHVDKVE------TPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 T+++ + P +++ PK V +AK+ ++V+ + LT+ G+L Sbjct: 247 TQISSKAEILTPDEQQLQAENAAIEPKVLVKLAKRNVIFLLVITSALTLVGSLA 300 >UniRef50_B4RWU8 Putative ampicillin resistance protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RWU8_ALTMD Length = 289 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 109/283 (38%), Gaps = 17/283 (6%) Query: 13 ERLFKLGEHWQLDHRLEAFFRRVKHFSL----GRTLGMTIIAMGVTFLLLRALQGVLFNV 68 ERL W ++ + ++ + + + LL +L Sbjct: 13 ERLISKTPSWHIEKYASQYRDFLQKKGWLGEKASSAALYFYLLVPALLLGAIEYWLLGAF 72 Query: 69 PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREY 128 T + ++ +CIG +R Y +L AA R D A + +L Sbjct: 73 LTFIEQSIVLFICIGCPVLREIYKNFLNAAQRGDLQACSMYTDQLGHCASQSDSDGSASA 132 Query: 129 L-RELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 + L W+N++ Y A + W I G G + + R+ L P L+ Sbjct: 133 EGKSFGQHLTWLNYQHYAAVMLWFIAFGAPGALFY---SISRSTTEALCGANHP---LKG 186 Query: 188 GIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 ++ LD++PVR+ ++GH +ALP W + F Y VLT ++ + Sbjct: 187 AAGRLMFALDYIPVRVTAFGMLMMGHFSRALPEWLSHALQFDVPAYDVLTHISAKAEVLT 246 Query: 248 PHVDKVE------TPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 P +++ P+ V +AK+ ++V+ + LT+ G+L Sbjct: 247 PEEYQMQAENAAIEPRVLVKLAKRNVIFLLVITSALTLVGSLA 289 >UniRef50_Q3SJZ9 Putative cobalamin biosynthesis transmembrane protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJZ9_THIDA Length = 305 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 89/309 (28%), Gaps = 31/309 (10%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLG--RTLGMTIIAMGVTFLLL 58 M F+ L + E L L + F ++ T G + V L+ Sbjct: 1 MVFFSVLAAVALEHLRPLRQPMLHYRHYTRFIHWLEGKLNAGEYTHGAIAWTLAVVPWLV 60 Query: 59 RALQGVL-----FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 V + + + +G + D A G Sbjct: 61 AVWAIFAVLEDVSPVLGWVWNVAVLYFTLGFKYYSDNAERIAHLLRAGDLDAARAQLGLW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + ++ + + R LFW ++ GPV + + RA Sbjct: 121 RGG-DTTHFTSDDITRVTIEQVMAE-SHRQMFGVLFWFVLLAPLGPVGAVLF---RAASI 175 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 R++ R V H+++WVP RL + YA+ G+ E A W + + Sbjct: 176 LSRRWEVSRGRFGLCACRVFHIINWVPARLTALTYAIAGNFEDATYCWRTQAAAWPEEEE 235 Query: 234 QVLTRLAQFSLAR-------------------EPHVDKVETPKAAVSMAKKTSFVVVVVI 274 V+ ++ + +AVSM + + + Sbjct: 236 GVVIAAGAGAMGVRLGQPVTVGGESVWRPELGTGQAPDPDFIASAVSMIWRGLVIWLTAG 295 Query: 275 ALLTIYGAL 283 L+ I G + Sbjct: 296 LLIVIAGWV 304 >UniRef50_Q2SXZ6 CobD/CbiB family protein, putative n=62 Tax=Burkholderiaceae RepID=Q2SXZ6_BURTA Length = 346 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 103/315 (32%), Gaps = 36/315 (11%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR 59 MT F+ LL LI E++ L + ++ H F G+ + + V + Sbjct: 35 MTFFSVLLALIIEQVRALSPSNPVFALFQSHAESAAHGFDAGKKKHGVLAWLVVVLPWVL 94 Query: 60 ALQGVLFNV------PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + V F + L + + +G + ++ A + +D + E Sbjct: 95 GVGLVYFLLYKVSFVLAFLWNIAVVYFTLGFRQFSHYFTDIHLALNNDDVPRARDILREW 154 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIV-GGTWGPVTLMGYAFLRAWQ 172 T I V E + + + R FW ++ G G V +L + Sbjct: 155 TGIDTVDMPVSEIVRHTLIHAVVA--SHRHVFGVFFWFVLPVGPAGAVLYRIAEYL--SR 210 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 W + V+DWVP RL + +A++G+ E A+ AW + Sbjct: 211 SWSVPADDRTAAFSTFAQRAFFVIDWVPARLTALGFAIVGNFEDAIYAWRNHTRQWPDPN 270 Query: 233 YQVLTRLAQFSLARE------------------------PHVDKVETPKAAVSMAKKTSF 268 VL +L T ++AV + + Sbjct: 271 DGVLLAAGSGALGARLAGPLAEPSSVDALAAGDSGPITVGDDCSPRTLQSAVGLVWRAVI 330 Query: 269 VVVVVIALLTIYGAL 283 + ++++ +LTI + Sbjct: 331 LWMLLLLMLTIAVWV 345 >UniRef50_Q5R0P3 Membrane protein required for beta-lactamase induction n=1 Tax=Idiomarina loihiensis RepID=Q5R0P3_IDILO Length = 274 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 20/288 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFR----RVKHFSLGRTLGMTIIAMGVTFL 56 M L L+ L ERL+ LE + R+ + + + Sbjct: 1 MVLIALLIALSVERLYHSPAFLHWSFFLERWQHWSAARLTNEKWKSEPLQLVRLLVPALA 60 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 + + + + T +V +L LL + R Y AYL AA+R D LT Sbjct: 61 VGFLVVLLDNLMVTFIVSILSLLLAMNCEPARKSYKAYLKAANRGDEQQVNEHQHALTEF 120 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 G ++L ++L+WIN+R Y+A +F+ ++ G++G + A Sbjct: 121 AGQHQP-------KQLSDSLIWINYRQYIAVMFYFVLFGSFGALVY--------ASLRYA 165 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 Q + DWVP RLAG ++GH +A P W + ++L Sbjct: 166 EKQISEPESTKLWQQFMWFADWVPARLAGFGLLIVGHFSRAFPVWVKHSLNPQADPDKLL 225 Query: 237 TRLAQFSLAREPHVDK-VETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 +A + H D E + + ++ V VIA LT+ G + Sbjct: 226 FNVASKAEDIPQHPDDRTEHIACQLRLMRRQQIFWVCVIAALTLTGWV 273 >UniRef50_A1S2H8 Signaling modulator of AmpD, AmpE n=20 Tax=Shewanella RepID=A1S2H8_SHEAM Length = 286 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 18/293 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV-------KHFSLGRTLGMTIIAMGV 53 M LF+ L+ ++ ERL L E WQ D + RR+ S + L ++ + Sbjct: 1 MALFSLLMAILAERLKFLPETWQFDTLISKLHRRLWKDEFTQGQASEFQVLFALLLPAVL 60 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 +L L + G+ + + TL VW+L ++C + R + Y+ AA R D+ A EL Sbjct: 61 VYLALIVVSGIAWGMLTLAVWVLTAMVCFSHQEQRKAFKRYIQAACRGDTQACYRHGSEL 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + A + L+ + ++ WIN+RFY A +LI GPV + Y +R ++ Sbjct: 121 DCSSCLEAVTADELGLK-VGQSVAWINYRFYGAVALYLI---ALGPVAAVLYCSVRYYEQ 176 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 R +DA+L VLDW+P R+ + L G A W D T Sbjct: 177 MQKRSNLQ----LPYVDALLTVLDWLPSRIFAFGFVLAGQFSSAFNRWRKLAFDPSTPAR 232 Query: 234 QVLTRLAQFSLAREP---HVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 Q++T A + + ++ + ++K+ +++ ++LLTI+G + Sbjct: 233 QIVTETATEAESIPQPSSAPVCLQPTLVLLGLSKRNFILLLAAVSLLTIFGII 285 >UniRef50_C6P7J7 Cobalamin biosynthesis protein CbiB n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P7J7_9PROT Length = 311 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 80/289 (27%), Gaps = 31/289 (10%) Query: 13 ERLFKLGEHWQLDHRLEAF-------FRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVL 65 E+L L L L + F +H + +I V + L Sbjct: 13 EQLHPLSSRKYLYTWLAGYVEFFQRNFNAGQHSHGRIAWLLAVIVPVVLVTSVHCLLLNA 72 Query: 66 FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDE 125 + +L+ L +G + +Y A + G+ E Sbjct: 73 HPIFAWAFSVLVLYLTMGFRQFSHYYTDIHQALRERQLDRARELLGDWLGKSCND-LSHE 131 Query: 126 REYLRELQNALLWINFRFYLAPLFWLIVGGTWG--PVTLMGYAFLRAWQYWLARYQT-PH 182 ++ ALL R +FW ++ G P+ + Y Sbjct: 132 EVARVTIEQALL-CTHRNVFGVVFWFVIFMMLGLGPIGAILYRLALFLNNRWGNQDEADF 190 Query: 183 HRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQF 242 H+++W+P+RL +A++G+ E W + + ++ Sbjct: 191 GSFGEFARQAYHLMEWLPLRLTAGTFAIVGNFEDTAYCWRTQADSWPDPEAGIILSSGAG 250 Query: 243 SLARE-------------------PHVDKVETPKAAVSMAKKTSFVVVV 272 +L + + ++A+ + + + Sbjct: 251 ALGVKLGQTILQDQQPVFRPELGIGDEADTDFMQSAIGLVWRALVFWLF 299 >UniRef50_B3R5E5 Putative COBALAMIN BIOSYNTHESIS TRANSMEMBRANE PROTEIN, cobD/cbiB family n=3 Tax=cellular organisms RepID=B3R5E5_CUPTR Length = 334 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 118/337 (35%), Gaps = 58/337 (17%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR 59 MT + LL LI E+ LG + + + A R +H F GR + + V L Sbjct: 1 MTFVSILLALIAEQFRALGRNNPIYEIVRALGDRAEHAFDTGRPRDAALAWLTVVLPLTL 60 Query: 60 ALQGVLFNV------PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 A+ V + + TL +L+ + +G + ++ A +R+D H T+ E Sbjct: 61 AVIVVHYLLASISVALTLAWNVLVLYMTLGFRQFSHYFTDIHEALNRDDVHTARTLLHEW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ- 172 T + V E +R A + R FW +V GP ++ Y Sbjct: 121 TGLDTVEMPVSE--IVRHTLEAAIIAVHRHVFGVFFWFLV--PVGPGGVVLYRTAEYLGR 176 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 +W L ++LDW+P RL + +A++G+ E A+ AW ++ + Sbjct: 177 HWNLPSTERSPALGRFAARAFYLLDWIPSRLTSIGFAIVGNFEDAVYAWRNHARKWNDAV 236 Query: 233 YQVLTRLAQFSLARE--------------------------------------------- 247 +L +L Sbjct: 237 NGILLASGGGALGVRLGTPLAEDDSTVVLRTSVAGPAVDYAPGMEDADGANGGPEPAPPE 296 Query: 248 -PHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 V T ++AV + + + ++++A++++ + Sbjct: 297 FGTEPGVRTLQSAVGLVWRAVVLWMLLLAMVSLALWV 333 >UniRef50_UPI0000E0F474 regulatory protein AmpE n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F474 Length = 274 Score = 181 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 123/288 (42%), Gaps = 20/288 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQ----LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFL 56 MTL LL L ER+ +H +D ++ ++ + ++++ + L Sbjct: 1 MTLIYLLLALFAERMLSKPDHCHSNFYIDKYIDWLNKKSYLTQSVSSSVLSLMWLLPGLL 60 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 L+ AL V ++ V L + + IG ++R Y YL AA++ D +L + Sbjct: 61 LVAALTLVNVSIIDFAVTLFVLYMAIGCPELRNTYKCYLQAANQGDIDTCNIYTQQLGLG 120 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 P R L+W+N++ Y AP+ +V G +G V L Sbjct: 121 QLEP---------RTFGQHLIWLNYQRYAAPMIMFVVFGLFGVVAYGCLRTLH------G 165 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 Q + QS + VLHVLDW+P+R+ + L+GH ALP W L D T VL Sbjct: 166 YSQANNIHAQSSLAKVLHVLDWLPIRITAFGFLLVGHFSNALPKWVGFLFDTSTHAKLVL 225 Query: 237 TRLAQFSLARE-PHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 +A + D P V +AK+ +V ++A+LT+ G + Sbjct: 226 AEVAVAAEDVTSQDGDITTEPTTLVQLAKRNVLFIVAIVAVLTLSGVI 273 >UniRef50_A3WNI1 Membrane protein required for beta-lactamase induction n=1 Tax=Idiomarina baltica OS145 RepID=A3WNI1_9GAMM Length = 278 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 16/289 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFR----RVKHFSLGRTLGMTIIAMGVTFL 56 MTL L+ L ERL+ L W +D ++ + +V++F + + + L Sbjct: 1 MTLIALLIALSIERLYPLPAVWSIDFYMQRWMNWSQTKVRYFRGQSAWALLLQILLPAAL 60 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 + + + +++ LL + AG RL Y L A R DS A +L Sbjct: 61 AWLLFHWLDSGLVNFIGGIIVLLLVMNAGPERLAYKQLLKTAMRADSAGYQEAAEQLRHY 120 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 +P G ++ A++W+NF +LAP+F+ + G G + + Y Sbjct: 121 AHLPEGT-------PVERAVVWLNFVHFLAPIFFFVTFGIAGVLAYGCLRSV----YRGT 169 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 Q ++ ++ L L+++P R A + AL+GH ALPA A + ++L Sbjct: 170 VQQDFDETARAQVERALWALNFIPARFAALGAALVGHFSHALPAVMAMATNTQDDNPELL 229 Query: 237 TRLAQFSLAREPHVDK-VETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 ++ + + R H D + +++ K+ VVIA+LT+ G +V Sbjct: 230 HQVVEKAEGRSHHPDDRSDAVTHQLNLMKRQHLFWFVVIAVLTLTGTIV 278 >UniRef50_A1K7I5 Cobalamin biosynthesis transmembrane protein n=5 Tax=Betaproteobacteria RepID=A1K7I5_AZOSB Length = 308 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 94/310 (30%), Gaps = 31/310 (10%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV--KHFSLGRTLGMTIIAMGVTFL-- 56 MTLF+ + L+ E++ L + L + + G + V Sbjct: 1 MTLFSLIFALLIEQVRPLPVQQVVQLPLRRLSALLIERFNDGQARHGKAAWWLIVLLASL 60 Query: 57 ---LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + L L + + + L +G + + A + + E Sbjct: 61 GSAVAYFLLWHLHPLLAFAFNVAVLYLTLGFRQESHFFTDIHLALRMGELDRARALLAEW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW-Q 172 A E ++ AL+ R FW IV GP + Y R + Sbjct: 121 RGGQYHEASSSE-VARLAIEQALV-AAHRNVFGVAFWFIVL--PGPSGAVMYRLARFFAD 176 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 W R V+DW+P RL ++++G E A+ W + Sbjct: 177 EWGQRADIEFGDFGRFASRAFEVIDWLPARLTAASFSVVGDFEDAVYCWRTQAMLWPDKA 236 Query: 233 YQVLTRLAQFSLARE-------------------PHVDKVETPKAAVSMAKKTSFVVVVV 273 +L +L + + ++ V + + V +++ Sbjct: 237 SAILIASGAGALGVKLGMPVHESGEIVERPEMGIGDEADADYMQSTVGLVWRALVVCLLM 296 Query: 274 IALLTIYGAL 283 +ALL + G + Sbjct: 297 LALLGVAGWV 306 >UniRef50_A4SW78 Cobalamin biosynthesis protein CbiB n=2 Tax=Polynucleobacter necessarius RepID=A4SW78_POLSQ Length = 319 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 57/322 (17%), Positives = 103/322 (31%), Gaps = 43/322 (13%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRT----------LGMTIIA 50 MT F+ L LI E+ + + + V G+T + + Sbjct: 1 MTFFSILFALIAEQYRPVTSSHWIARICARWLDWVAGEFGGKTEEGASPVGARIACMVAF 60 Query: 51 MGVTFLLLRALQ--GVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARAT 108 + TFL+ V + + L +LI L G + + A A +D A T Sbjct: 61 ILPTFLVFIVYVTCMVTYPILGFLWNVLIAYLFFGFRQFSHSFTAVHEAIEAHDLPAART 120 Query: 109 MAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFL 168 GE + E E + + + LFW ++ GP ++ Y Sbjct: 121 ALGEWYGPELDTSNLSETEVISLALERAIIGSHHHVFGVLFWFMM--PMGPAGVVLYRLA 178 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDF 228 + + L +VLDW+P R+ + +A++G+ E AL W + Sbjct: 179 DIASQRWSERGDFN--LSEASRHFFYVLDWIPARITAMGFAIVGNFEGALYGWRYLTQKW 236 Query: 229 HTSQYQVLTRLAQFSLAREPHVDKVE---------------------------TPKAAVS 261 S V+ +L E + ++AV Sbjct: 237 SDSLSAVILAAGSGALGVRLGEPLSEPDSDEALRMAEAGEPVVYEVGLEPTERSMRSAVG 296 Query: 262 MAKKTSFVVVVVIALLTIYGAL 283 + + + ++ +LTI L Sbjct: 297 LVWRLVIAWMALLLMLTIALWL 318 >UniRef50_B7VKP2 Cobalamin biosynthesis protein CobD/CbiB n=2 Tax=Vibrio RepID=B7VKP2_VIBSL Length = 321 Score = 176 bits (447), Expect = 6e-43, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 89/297 (29%), Gaps = 28/297 (9%) Query: 1 MTLFTTLLVLIFE---RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVT-FL 56 M + +L + R L ++E R FS + + + F Sbjct: 19 MMIAALMLDHLLGEPKRFHPLIGFGYAVEKIEKLLNRATKFSGLIAWIAATVPLCLLSFW 78 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 L L + + L +++ + IG + H S+ D G + Sbjct: 79 LQHTLLSMGNTLGFWLFNIVVLYIAIGQRSLLEHAQWIHQPLSQGDLDLAREKVG-WIVS 137 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 + +++ L N LFW + G G + L A Sbjct: 138 RNTETMDQRQITSSTIESVLENGNDAI-FGTLFWFALLGAPGALLFRLVNTLDAM---WG 193 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 V V+ W P RL + Y+L+G+ + AL W + + Sbjct: 194 YKNERWLEFGYVAAKVDDVMGWAPARLTALSYSLLGNTKLALKCWKEQAKHCSSPNGGPV 253 Query: 237 TRLAQFSLAR-------------------EPHVDKVETPKAAVSMAKKTSFVVVVVI 274 +L + ++ +E A+S+ +KTS + +V+ Sbjct: 254 MTSGAGALQIIIGGDTYYHGKLVKKRPMGKGNIATLEDIPRAISLVQKTSVLWAIVM 310 >UniRef50_Q47US3 Putative inner membrane protein AmpE n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47US3_COLP3 Length = 311 Score = 176 bits (446), Expect = 9e-43, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 110/302 (36%), Gaps = 44/302 (14%) Query: 18 LGEHWQLDHRLEAFFRRVKHF--SLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWL 75 + WQ + + + + T + + L + +V LL Sbjct: 17 SAKVWQFNFYYQHYHHFFSKNFTAKQGTTASAVFIILPVIATYLLLDVIDNSVLQLLFST 76 Query: 76 LIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNA 135 +I ++C G R Y +YL +A R + +L +P A Sbjct: 77 VILIVCFGCTTTRKSYKSYLHSAFRGEETTTEMHHEQLLSDKNLPEM--------GFGQA 128 Query: 136 LLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGI------ 189 L+W+N+R+Y+A + + V G G V + + ++ Q+ + Sbjct: 129 LIWLNYRYYIAIMLFFTVFGAAGAVFYRLLTTVIEHKKAKCMASAAENKAQAEVSSVDES 188 Query: 190 ---------------------------DAVLHVLDWVPVRLAGVVYALIGHGEKALPAWF 222 VL LDW+PVR+A Y +GH KA+P W Sbjct: 189 DIESEEHHQAVHEGNVAPNIMNGCQNHHDVLFWLDWLPVRIASFGYMFVGHFSKAMPVWL 248 Query: 223 ASLGDFHTSQYQVLTRLAQFSLA-REPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 SL D +QVL +A+ S D P V +AK+ +V+ VI++LT+ G Sbjct: 249 ESLFDSQKPTHQVLIDVAEKSEDLLVNENDCTAEPCLLVRLAKRNVLLVLAVISILTLSG 308 Query: 282 AL 283 L Sbjct: 309 LL 310 >UniRef50_A6W1J9 Cobalamin biosynthesis protein CobD n=2 Tax=Marinomonas RepID=A6W1J9_MARMS Length = 330 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 94/311 (30%), Gaps = 38/311 (12%) Query: 2 TLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF---------SLGRTLGMTIIAMG 52 T + L+ +RL + W + + + S R +G+ + Sbjct: 24 TSLILVAALVLDRLLGEPKSWHPLIWFGRWVDLCRQYIQLPLDASASRQRLVGVLAWLVA 83 Query: 53 VTFLLLRALQGVLFNVPT--LLVWLLIGLLCIGAGKVRLHYHAYLTAASR----NDSHAR 106 V L+ L + +L+ +L+ IG +R H A S +D Sbjct: 84 VLPWLMVLLALLWLLPDWLDILLSVLVLYFAIGWQSLREHALAIYQPLSASPLSDDKLDE 143 Query: 107 ATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYA 166 A A + + +++ L + AP+FW ++ G G + Sbjct: 144 ARRAVSYIVSRDTQNLDESAVAKASIESVLENGSDAI-FAPIFWFLIFGAPGVLLYRLAN 202 Query: 167 FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLG 226 L A + VL+++P RL Y GH A+ + Sbjct: 203 TLDAMWGYKTESLLHFGWF---AARFDDVLNYIPARLVIYTYGACGHWRAAIRSARRPSA 259 Query: 227 DFHTSQYQVLTRLAQFSLAR-------------------EPHVDKVETPKAAVSMAKKTS 267 + + + +L E + K K A+ + K+ Sbjct: 260 RWKSPNAGPVMAAGAGALGIQLGGEAPYFGKIETRPILGEGELPKPHHLKEAIWLVDKSV 319 Query: 268 FVVVVVIALLT 278 + +V+ LL Sbjct: 320 ILWGLVVCLLV 330 >UniRef50_A1WB47 Cobalamin biosynthesis protein CbiB n=2 Tax=Comamonadaceae RepID=A1WB47_ACISJ Length = 328 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 52/329 (15%), Positives = 100/329 (30%), Gaps = 48/329 (14%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAF-------FRRVKHFSLGRTLGMTIIAMGV 53 M+ F L L+ E+ L + L A+ F + G+ ++ + Sbjct: 1 MSFFAILFALLIEQARPLARSNPIHAGLRAWAVSVNRNFDAGQSHHGWVAWGLAVLVPPL 60 Query: 54 TFLLLRALQGVLFNV-PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 L + L+ + + + +G + H+ A D+ + Sbjct: 61 VVLAVHLALLHWLGWPFALVWNVAVLYVTLGFRQFSHHFTGMRDALEEGDAVDARARLAQ 120 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG-----GTWGPVTLMGYAF 167 + E +R + + R L W + G G V F Sbjct: 121 WKQVEVSELPRSE--IVRHVIEYSVIAAHRHVFGVLAWFSILAALGLGPTGAVLYRLAEF 178 Query: 168 LRAWQYWLARY--QTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASL 225 + + AR Q P LQ V+DW+P RL + +A++G E+A+ W Sbjct: 179 VSRYWGARAREATQPPSESLQQAAAQAWTVIDWLPARLTALSFAVVGSFEEAIEGWRFHA 238 Query: 226 GDFHTSQYQVLTRLAQFSLAR-------------------------------EPHVDKVE 254 F V+ ++ +V Sbjct: 239 QRFPNDNDGVVLAATAGAINVRLGGEALRSRAGAQVQPGFEVDADIGDSDSTPGREPEVG 298 Query: 255 TPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 ++ V + ++ V ++++ALLT L Sbjct: 299 HLRSVVGLVWRSVVVWMLLLALLTFARLL 327 >UniRef50_A0YEZ0 Membrane protein required for beta-lactamase induction n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YEZ0_9GAMM Length = 291 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 55/300 (18%), Positives = 110/300 (36%), Gaps = 27/300 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 M ++V +L+ Q D+ +E R+ + + + + +L Sbjct: 1 MEFLAIVIVYCLSQLWDSAGALQHDNWIERLSRKSTDMFTSSAMRLGFLIAVPSLTILIV 60 Query: 61 LQGV---LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 L V L + L+++++ L +G G + YL + ++ + + A ++ Sbjct: 61 LALVDSMLLGLLMLIIYVITLLFSLGRGDYGEDLYRYLNSWNQGNFESAYENALQIQGFQ 120 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLAR 177 D + ++ A L+ F + A +FW +V G G V + AR Sbjct: 121 PTDTVTDSLSLHQAVKTAFLYYGFERWFAVIFWFLVLGPVGAVGYRVA-------FLSAR 173 Query: 178 YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALP-AWFASLGDFHTSQYQVL 236 ++ V+H LDW+P RL + + L G+ +W D S +++ Sbjct: 174 SDVLESDDRALAVRVIHYLDWLPSRLLVLSFTLTGNFVNGFSHSWGEIWSD--QSASKLI 231 Query: 237 TRLAQFSLAREPHVDK--------------VETPKAAVSMAKKTSFVVVVVIALLTIYGA 282 A +L E A S+ +++ ++VIA+LT+ G Sbjct: 232 NSCAMAALDGAEKPLNEGDRDHSEKIIHHGREQILALKSLMSRSAMCWLIVIAVLTLVGG 291 >UniRef50_C3XB65 Cobalamin biosynthesis protein CobD n=2 Tax=Oxalobacter formigenes RepID=C3XB65_OXAFO Length = 316 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 88/255 (34%), Gaps = 14/255 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF-SLGRTLGMTIIAMGVTFLLLR 59 M F+ L L+ + + + L A V+ + G + + + +L Sbjct: 1 MFFFSILCALLIDHFRPMRTNNLFLALLRATGAHVRSWCDTGTSHHGCLGWIVANAMLAI 60 Query: 60 ALQGVLF------NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + V + + LL +LI LC+G ++ A A + + GE Sbjct: 61 PVLMVYWICQLIHPLLGLLWSILILYLCMGFRNYNHYFSAIQMALLNGEQMQARNLLGEW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIV-GGTWGPVTLMGYAFLRAWQ 172 + ++ AL+ + +FW ++ G G + ++ Sbjct: 121 CDCDASAMDTAD-ITRMAIEKALISVQKD-VFGIIFWFVLPFGPAGAILYRFS----SYL 174 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 + + +DWVPVRL + +A++G+ E A+ AW G + Sbjct: 175 QKSWNEPDDSDSFGLFAKKIFYWIDWVPVRLTALSFAIVGNFEDAIYAWRNFAGRWKNRN 234 Query: 233 YQVLTRLAQFSLARE 247 +L A ++ + Sbjct: 235 IGILLASAGGAMGVK 249 >UniRef50_A6FBG6 AmpE protein n=1 Tax=Moritella sp. PE36 RepID=A6FBG6_9GAMM Length = 282 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 82/277 (29%), Positives = 123/277 (44%), Gaps = 12/277 (4%) Query: 13 ERLFKLGEHWQLDHRLEAF-FRRVKHFSLGRTLGMTIIAMGVTFL---LLRALQGVLFNV 68 ER+ L QLD+ L+ + F + F G G +I L LL AL G+ + + Sbjct: 13 ERVVHLSAKLQLDNVLQRYLFPLLPSFINGGLFGTLVIIALPAMLMYSLLDALTGLYYGI 72 Query: 69 PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREY 128 TL+ WLL+ L+ G R Y YL A SRND A+ A L + Sbjct: 73 FTLVTWLLLLLMSFGGSDYRRDYRQYLKALSRNDLEAKGMYANCLDVNSERFCST---LL 129 Query: 129 LRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSG 188 + L+WIN+RFY A +F+ +V G G + + Q +SG Sbjct: 130 TTAVAQQLVWINYRFYFAVIFYFVVAGPIGLTMYVVARSYHKYVIQHHSKQLN----RSG 185 Query: 189 IDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREP 248 I V+ ++DW+P RL +AL+ + ALP S D T ++ +L ++ + Sbjct: 186 IHRVMRIVDWLPARLTMFGFALVAEEQAALPQSLRSWRDLSTPEFDLLGKVVYLASKANV 245 Query: 249 HVDKV-ETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 DK + V +AK+ V VIALLTI G ++ Sbjct: 246 ETDKCYDYTCYLVQLAKRNIIFFVTVIALLTINGTII 282 >UniRef50_Q2S8B8 Cobalamin biosynthesis protein CobD n=4 Tax=Gammaproteobacteria RepID=Q2S8B8_HAHCH Length = 334 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 86/306 (28%), Gaps = 36/306 (11%) Query: 2 TLFTTLLVLIFERLFKLGEHWQLDHRLEAFFR------RVKHFSLGRTLGMTIIAMGVTF 55 TL +L L F+ L + R+ FS + A+ Sbjct: 23 TLLILVLALSFDALLGEPRRLHPLVGFGRYAGWVEGGIRIADFSAPTMRALGAAALTAAI 82 Query: 56 LLLRALQGVL------FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 L A + +L + L IG + H R+D+ A Sbjct: 83 LPWTAFAWLAGEWSESSAWVRILFSAFVLYLAIGWRSLLDHARRVAAPLRRHDADAARRS 142 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLR 169 + + +E ++AL N A +FW +V G G V L Sbjct: 143 LS-MIVSRDTAGLSEEEIASAATESALENGNDAI-FAAIFWFLVAGIPGVVLYRLSNTLD 200 Query: 170 AWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFH 229 A + + VL+W+P RL YA G + AL W A + Sbjct: 201 AM---WGYKNARYVNFGWAAARLDDVLNWIPARLTAFSYACCGAMDSALQCWRAQGAHWK 257 Query: 230 TSQYQVLTRLAQFSLARE-------------------PHVDKVETPKAAVSMAKKTSFVV 270 + + +L ++ + A ++ + + Sbjct: 258 SPNAGPVMAAGAGALRVRLGGAATYHGSLQQRPLLGCGDAASAQSIEGACALINRALALW 317 Query: 271 VVVIAL 276 +AL Sbjct: 318 TATVAL 323 >UniRef50_C6XB70 Cobalamin biosynthesis protein CbiB n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XB70_METSD Length = 305 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 34/253 (13%), Positives = 74/253 (29%), Gaps = 13/253 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR 59 M + L L H + + ++ F+ G+ + L Sbjct: 1 MNFIVLVSALALSYYRPHKSLDWLFHICTPYAQLLERNFNGGKNRHGVVAWTLGALLPSI 60 Query: 60 ALQGVLFNV------PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + + + + +L + + L + + TA + + T+ + Sbjct: 61 VIGFLYYGLMELNVIVGMLFGIAVLYLILRFSRFSQRAERIATALADKNIDEARTLLSQW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 ++ L + P+FW ++ G G + Q Sbjct: 121 EPPLETSHYNAAEVARVSIETTL-RRAHQGLFGPIFWFVLLGPGGALLYRLSHL--FMQS 177 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 W HR LDW+P+R++G +A++G E A+ W + Sbjct: 178 WEPHLDNHFHRF---AHRAFEWLDWLPIRISGACFAIVGDFEDAVYCWRTQAAGWPEQSL 234 Query: 234 QVLTRLAQFSLAR 246 ++ +L Sbjct: 235 GIILASGAGALGV 247 >UniRef50_A1WEQ3 Cobalamin biosynthesis protein CbiB n=14 Tax=Burkholderiales RepID=A1WEQ3_VEREI Length = 338 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 90/318 (28%), Gaps = 50/318 (15%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFF---------RRVKHFSLGRTLGMTIIAM 51 M+ F L L+ E+ L + L A+ + +H L L + + A Sbjct: 11 MSFFAILFALLIEQARPLARSNPIHAGLRAWALSVSRNFDTGKPQHGWLAWCLAVLVPAC 70 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 + L G + +L + + + +G + H+ A D Sbjct: 71 ATLAMHWLLLWGPGWP-FAMLWSVAVLYVTLGFRQFSHHFTGIRDALEGGDEDDARARLA 129 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG-----GTWGPVTLMGYA 166 RE +R + + R L W V G G V Sbjct: 130 HW--QQVDVGLLPRREIVRHVIEYSVLAAHRHVFGVLAWFSVLAALGLGPTGAVLYRLSE 187 Query: 167 FLRAWQYWLARYQ--TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFAS 224 F+ + R LQ V+DW+P RL + +A++G E+A+ W Sbjct: 188 FVARHWHPRPRMGPALASASLQQASARAWTVIDWLPARLTALSFAVVGSFEEAIEGWRFH 247 Query: 225 LGDFHTSQYQVLTRLAQFSLAR-------------------------------EPHVDKV 253 F V+ ++ +V Sbjct: 248 AQRFPNDNDGVVLAATAGAIDVRLGGEALKAHAGMRTSQGLEIDSDMDDSDATPGREPEV 307 Query: 254 ETPKAAVSMAKKTSFVVV 271 ++ V + ++ V + Sbjct: 308 GHLRSVVGLVWRSVVVWM 325 >UniRef50_A6SVI9 Cobalamin biosynthesis protein CobD n=2 Tax=Oxalobacteraceae RepID=A6SVI9_JANMA Length = 318 Score = 167 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 81/254 (31%), Gaps = 12/254 (4%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGR-------TLGMTIIAMGV 53 MT F+ L+ E+L L + A +++ + I A + Sbjct: 1 MTFFSIFFALLIEQLKPLRADNPVYAGARALAAKLEGSFNAGQAHHGRLAWALMIAAFCI 60 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 LL + L + L+V + + L +G ++ + A + D ++ E Sbjct: 61 PVALLYWISVKLGPLAALIVNVGVVYLTLGFRHYSHYFTSIQLALNNGDEATARSLLAEW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 T ++ AL+ R FW + GPV + Y Sbjct: 121 TK-RDTAGMDVSEVARIAVETALV-TTHRNVFGVFFW--ILTPLGPVGAVMYRVAEYLAR 176 Query: 174 WLAR-YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 + +DW+P RL +A++G+ E A+ AW G + Sbjct: 177 VWNEPKMAEREEFGRFASQAFYWIDWIPARLTAAAFAVVGNFEDAIYAWRNFAGRWQDEA 236 Query: 233 YQVLTRLAQFSLAR 246 ++ ++ Sbjct: 237 IGIILSAGGGAMGI 250 >UniRef50_A8FV25 CobD; cobalamin biosynthetic protein n=2 Tax=Shewanella RepID=A8FV25_SHESH Length = 301 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 78/240 (32%), Gaps = 8/240 (3%) Query: 8 LVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFN 67 L L+ +R+ + L + VK T + + L+L + L+ Sbjct: 14 LALVLDRVLGEMTRFHPLVGLGRYAGWVKRTLWRPTK---VRGVLAVILVLLPILPFLWA 70 Query: 68 VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 + L+ L IG + H +A A D G + + +++ Sbjct: 71 SRLWWLDALVLYLVIGGRSLSEHGNAVGQALQHGDLDLARKKVG-MIVSRKTENLTEQQV 129 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 L++ L N + A LFW V G G + L A + Sbjct: 130 VNATLESVLENGNDALFGA-LFWFCVAGLPGALVYRFSNTLDAM---WGYKNQTYLHFGW 185 Query: 188 GIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 G +L+++P RL + YAL G+ AL W + V+ SL Sbjct: 186 GAAKFDDLLNYIPARLCALAYALGGNVTLALSCWREQAPQCASPNGGVVMAAGAGSLNIT 245 >UniRef50_B8GLX9 Signaling modulator of AmpD, AmpE n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GLX9_THISH Length = 296 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 60/302 (19%), Positives = 110/302 (36%), Gaps = 28/302 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF--SLGRTLGMTIIAMGVTFLLL 58 M+L T L+ L ER + + L+ + ++ SLG + G + + +L Sbjct: 1 MSLITILIALFLERFAGTLDDLRQFRWLDGYANWIRERMESLGISDGTAVFVATLLPPVL 60 Query: 59 RAL------QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 G + + +++ ++I LLC+G + AY+ A + D + A + Sbjct: 61 LLAIVALLVHGAVLGLLDIVLGVIILLLCLGPKDLNDQVEAYVEAGAMKDEERQKRHARD 120 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 L VP ER + A+ A LFW + G G + L++ Sbjct: 121 LLGQQEVPEDLRERTLS--VVQAMFSEANSRLFAVLFWFAILGPLGAFIYRLGSLLKSPG 178 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFAS----LGDF 228 + + + ++DW+P RL + YAL+G + A + Sbjct: 179 EERPE------GVMAAAARLQALMDWIPARLFALGYALVGSFDTAFAVLTRFLPGSWANM 232 Query: 229 HTSQYQVLTRLAQFSLARE----PHVDKVETPKAAVS----MAKKTSFVVVVVIALLTIY 280 +L SL + H + A V + +T V + V+AL+T+ Sbjct: 233 AEENTSLLREAGSGSLHLDHVRGEHWEDPNEINALVERANHLIMRTLVVFLAVLALMTLA 292 Query: 281 GA 282 G Sbjct: 293 GW 294 >UniRef50_A4VJ38 Cobalamin biosynthesis protein cobD n=67 Tax=Proteobacteria RepID=COBD_PSEU5 Length = 303 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 87/299 (29%), Gaps = 30/299 (10%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVK------HFSLGRTLGMTIIAMGVTFL 56 + + L+ + L + R++ R+ G+T + V L Sbjct: 4 FLSVIGALLLDALLGEPKRAHPLVAFGRLADRLEQHFNGAAGRGWRSHGVTAWCLAVLPL 63 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 L A L L +++ L +G + H A R+D + Sbjct: 64 TLLAWLLSLLPGIGWLAEIVLLYLALGLRSLGEHALPVAQALWRHDLPEARRRVAC-IVS 122 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 +E ++ L + A LFW IV G G V L A Sbjct: 123 RDTSQLDEEGVARAATESVLENGSDA-VFAALFWFIVAGAPGVVLYRLSNTLDAM---WG 178 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 R + +L++VP RL V YAL+G +AL W + + + Sbjct: 179 YRNARFERFGWAAARIDDLLNYVPARLVAVTYALLGRTRRALRCWRTQAPLWDSPNAGPV 238 Query: 237 TRLAQFSLAR-------------------EPHVDKVETPKAAVSMAKKTSFVVVVVIAL 276 +L + + A+ + V ++V+ Sbjct: 239 MAAGAGALGVVLGGAAIYHGELHARPELGRGSAPQARHIEHALDLVWAGVGVWLLVLLF 297 >UniRef50_C6BBL8 Cobalamin biosynthesis protein CobD n=61 Tax=Proteobacteria RepID=C6BBL8_RALP1 Length = 326 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 82/257 (31%), Gaps = 18/257 (7%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF--------SLGRTLGMTIIAMGVTF 55 L ++ +RLF W + ++ + S R +G+ A+ V Sbjct: 18 LAALAGVLLDRLFGEVPRWHPLVGFGRLAKAIERWMNRAPAAVSWSRLVGVVAWAIAVLP 77 Query: 56 LLLRALQGVL-----FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMA 110 L+L A V + + IGA + H A D Sbjct: 78 LVLLAGWLVGVARDVSPWLVAALDAVALYFAIGARSLHEHIAPIALALRDADVPRAR-AL 136 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 + + DE +++AL + APLFWL+V G G V L A Sbjct: 137 ASRIVSRDLTQATDEPIARAAVESALENGSDAI-FAPLFWLVVAGAPGVVLYRLANTLDA 195 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHT 230 + VL+W+P RL + YAL+GH AL W + + Sbjct: 196 M---WGYRNARFTGFGWAAARIDDVLNWIPARLTAISYALLGHTADALNCWRTQAPQWSS 252 Query: 231 SQYQVLTRLAQFSLARE 247 + SL + Sbjct: 253 PNAGPVMAAGAGSLRVQ 269 >UniRef50_Q2SKR8 Membrane protein required for beta-lactamase induction n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SKR8_HAHCH Length = 293 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 100/299 (33%), Gaps = 27/299 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVK-------HFSLGRTLGMTIIAMGV 53 M LL I ++ L + D ++F + + + L Sbjct: 1 MKFLVLLLTYIMQKRLNLTLSRRHDQWAKSFLTFFELRLPVVRNSAPFYLLIALAAPALA 60 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 F++LR + V F TL V +++ LC+G G ++ YL + E Sbjct: 61 LFIVLRLTEDVFFGFLTLFVHIVMLFLCLGCGFLKQSIDIYLQQWREGRFQSAFRTLEEA 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + + + L+ F Y +FW + G G + Sbjct: 121 EIHIDDAQNMSPAQLHYAACSQYLYQTFVRYFMVIFWYMAIGPVGALLARLAHVA----- 175 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 + P + + V L+W+P RL + +AL G+ A+ + D H + Sbjct: 176 ----GRDPSVYVPQQMTTVYKALEWIPSRLLALSFALAGNFGGAIKHSANDMIDPHADAF 231 Query: 234 QVLTRLAQFSLAREPHVDKVE-----------TPKAAVSMAKKTSFVVVVVIALLTIYG 281 VL + A ++ P E A + + + ++IALLT+ G Sbjct: 232 TVLRKAAGGAVEIYPLAAPSEREGQDVALEVKQMCAIRDLLNRAMIIWFILIALLTVAG 290 >UniRef50_C7I5F9 Adenosylcobinamide-phosphate synthase n=1 Tax=Thiomonas intermedia K12 RepID=C7I5F9_THIIN Length = 324 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 12/254 (4%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAF-------FRRVKHFSLGRTLGMTIIAMGV 53 M + L+ L+ E+L LG + ++ F + + ++ + Sbjct: 1 MAFLSVLIALLVEQLKPLGRGSAVYRLRQSLADIAARNFDAGRPHHGVAAWFIAVLLPAL 60 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L + + + L + + +G + ++ A + ND+ ++ + Sbjct: 61 ITLAIYLVALHYSLLLALAWNVAVLYFTLGFRQFSHYFTDIQDALNHNDAATARSLLKQW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + V + ++ L R+ L FW I+ GP + Y Sbjct: 121 KALDTVDMSTSD--VTQQTIEHALVSVQRYVLGVFFWFIL--PIGPAGAVLYRLSDYVAG 176 Query: 174 WLARYQ-TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 + LQS +LDW P RL YA++G+ E A+ W + Sbjct: 177 KWNQTDSEASPALQSFSQKAFDLLDWAPARLTASGYAIVGNFEDAVDVWRGYSQLWANRN 236 Query: 233 YQVLTRLAQFSLAR 246 V+ A ++ Sbjct: 237 TGVMLASAAGAVGI 250 >UniRef50_Q1YSB1 Inner membrane protein AmpE n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YSB1_9GAMM Length = 319 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 93/318 (29%), Gaps = 38/318 (11%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFF--------RRVKHFSLGRTLGMTIIAMG 52 M L+ + Q D ++ + R+ L + + + Sbjct: 1 MHFLIILIAIAVLESNGQLAFIQRDMWVQKWHGALVKLGSSRLPTLHNNSQLRVLVFVLV 60 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 L L + + L L + L C+G G + + RND A A Sbjct: 61 PVAALQLVLWYLGSGILGFLAELAVLLYCLGRGDLSAQISVLQSDIQRNDLQAAFHDAAV 120 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + H + REL L + F A +FW G + A Q Sbjct: 121 FNIGHRAVSAESAGGLFRELAATLPYRLFERSFAVVFWFFFLGAPVALAYRLLALHGDMQ 180 Query: 173 YWLARYQTPHH-----------RLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAW 221 A Q + +L L+W+PVR+ + L+G KA Sbjct: 181 LQTADIQIEQGIEEDAAEVLESDRPDEANKLLWYLEWIPVRVLALTLGLMGDFSKATAPL 240 Query: 222 FASLGDFHTSQYQVLTRLAQFSLA-------------------REPHVDKVETPKAAVSM 262 + TS VL R +L ++ V++ Sbjct: 241 KELVFCAKTSTADVLRRCVFGALNNQTANPSETYEQEREEANSVVDEAAQLSQTGEIVAL 300 Query: 263 AKKTSFVVVVVIALLTIY 280 +++ +V IALL + Sbjct: 301 FRRSMTGWLVAIALLVLT 318 >UniRef50_A4BU75 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BU75_9GAMM Length = 291 Score = 159 bits (403), Expect = 8e-38, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 87/295 (29%), Gaps = 17/295 (5%) Query: 1 MTLFTTLLVLIF----ERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFL 56 M L LL L ++L +L R+ G+ ++ + + Sbjct: 1 MHLIAILLALWAKQYPQQLDRLRVTDSCYRYARWLQARLPVGLWDNRAGVALLLLPPVLV 60 Query: 57 LLRALQG---VLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 LF + +L+ ++ L G +L A D A L Sbjct: 61 AWLIQGWFGDWLFGLGGMLLSVVALLFAFGTEHSDQLVEQFLQAWREGDQAFARQAAASL 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + L + LFWL+V G G R + Sbjct: 121 NGG--TLPPTLGEGLPQAAVQGLFCYSHERIFGVLFWLVVLGPVGAFAYHLIVLARRFG- 177 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFH-TSQ 232 + H + V W+P R+ +AL G L W Sbjct: 178 --DHHPDSGHGFRQSAREFAWVAGWLPARVTAGSFALAGSFIHCLEGWRERRHLPELDGN 235 Query: 233 YQVLTRLAQFSLAREPHVDKVE----TPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 ++L +L P + T A S+ ++ V +V IALLT++G + Sbjct: 236 AELLAATGFGALGLAPSNSLRDLLDQTLNDARSLIRRAIVVWLVAIALLTLFGWV 290 >UniRef50_Q21ME0 Signaling modulator of AmpD, AmpE n=2 Tax=Alteromonadales RepID=Q21ME0_SACD2 Length = 281 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 95/290 (32%), Gaps = 21/290 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLG-----RTLGMTIIAMGVTF 55 M L T ++ + F +++ D + ++ T + ++ + Sbjct: 1 MDLLTLIIAIAFVQVWGAENPLHKDGWFVQWCDGLQARLKASAIREYTWLVAVLVPVLCV 60 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 LL G + L + +++ L +G G+ Y A D + A L + Sbjct: 61 WLLAEAVGAVSAWLLLPISVVVMLYSLGRGEFTNIVSEYTKACYVEDWPSAMERAQRLGV 120 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 D ++ + F +FW ++ GPV + Y L + Sbjct: 121 HTDGVDEGDWSALHEQVLTEAGYRGFERSFVIIFWFLIT---GPVVALLYRLLFIYCQQR 177 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQV 235 P L ++W RL G+ +A G+ L F S +V Sbjct: 178 PSEDLP--------AKCLWAMEWPVTRLLGLSFAFTGNFVGCYNRLKECLICFKRSSQEV 229 Query: 236 LTRLAQFSLAREPHVDKVETPK-----AAVSMAKKTSFVVVVVIALLTIY 280 LT+ +L+ + ++ + + K+T + + AL+ I Sbjct: 230 LTQSILGALSVDENLTQSCEVTRKELDLLSKLYKRTLWFWLASAALIIIV 279 >UniRef50_Q12IR5 Signaling modulator of AmpD, AmpE n=1 Tax=Shewanella denitrificans OS217 RepID=Q12IR5_SHEDO Length = 327 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 72/330 (21%), Positives = 127/330 (38%), Gaps = 51/330 (15%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRR-VKHFSLGRTLGMTIIAMGVTFLLLR 59 M LF+ L+ ++ ERL L WQ D ++++ +R SL T G + +L Sbjct: 1 MALFSLLIAILVERLRLLPSQWQFDALMQSYHKRFWDRDSLASTSGALLAMALPAIILGL 60 Query: 60 ALQGV---LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 L + F + LL W+ + ++C +R + Y+ AA R+D A A EL Sbjct: 61 ILYLLDGLFFGLFNLLAWIFVSVICFSHQNLRDTFKKYIQAACRSDVQASFRYASELDCC 120 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 + A +ER+ ++ WIN+R+Y A +LI G G V Y +R + Sbjct: 121 ECLDA-VNERDLGAKVGQISAWINYRYYGAVALFLIFLGPVGAV---LYCTVRYYSQREL 176 Query: 177 RYQ---------------------------TPHHRLQSGIDAVLHVLDWVPVRLAGVVYA 209 P H + + +LDW+P R+ + Sbjct: 177 SLNNQLQHCQTAKQALLEQGVVADNAELADEPSHIKMPLVQEIQKLLDWLPSRIFSFGFV 236 Query: 210 LIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLA----------------REPHVDKV 253 L G + W +H+ ++T A S A + V Sbjct: 237 LSGQFSSGMLIWRKLALQWHSGAKTLITETALASEASIVSEMLADDTLDSDSAKNAPLSV 296 Query: 254 ETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 A + ++K+ +++ V+++LTI+G + Sbjct: 297 RETLALLELSKRNFILLLTVLSVLTIFGVV 326 >UniRef50_C5V172 Cobalamin biosynthesis protein CbiB n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V172_9PROT Length = 312 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 17/259 (6%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF--SLGRTLGMTIIAMGVTFLLL 58 M+LF+ ++ L+FE+L L L L + + S + G + + +L Sbjct: 1 MSLFSLIVALLFEQLKPLHTRQHLSGWLSGYLEYFQQHFNSGEYSHGKAAWWLAILPILF 60 Query: 59 RAL-----QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 A L + LL +L L G G+ + A M L Sbjct: 61 AATAVFWGLSYLHPILALLFNILALYLSFGFGRFSHGFTDIQQALQSGKLVEARAMLSAL 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGT------WGPVTLMGYAF 167 V E+ ++ +LL + + W ++ G + Sbjct: 121 CG-KPVDELNAEQVACVTIETSLL-AALQHLFGVIVWFVIFSLSGAGGAAGALLYCAVRT 178 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGD 227 LR +W + + ++W+PVRL +A++G+ E + W + Sbjct: 179 LRT--HWADELNEDESKFCDYACQMSVRIEWLPVRLTAATFAIVGNFEDTVYCWRSQAAS 236 Query: 228 FHTSQYQVLTRLAQFSLAR 246 + S+ +L A + Sbjct: 237 WPDSETGILLASAAGASGV 255 >UniRef50_A4BKE4 Membrane protein required for beta-lactamase induction n=1 Tax=Reinekea blandensis MED297 RepID=A4BKE4_9GAMM Length = 267 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 90/281 (32%), Gaps = 15/281 (5%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 M ++ I + G + + + + L + + A+ +L Sbjct: 1 MGFPAIIIAYIVS-ISLSGHGEPATRWAQRWHKLLSSRKWDPRLVIVLFALLPAVVLGIV 59 Query: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 L + V +V + + +L +G Y D +A + + Sbjct: 60 LGLIGSRVLAFVVSVALLILAFKSGDQPESVADYRRKTEAGDDQGAWQLAVDELGLERQM 119 Query: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 E +Q L ++ + FW I G G + + Sbjct: 120 YEPGEEGIEEGIQAGLAYLYLERFFVHTFWYIAFGAPGILLVWLVTTA-----------V 168 Query: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA 240 + V L W+PVRL AL+GH W + DF +L Sbjct: 169 QGEEADAFCHQVKQALYWIPVRLMTFTLALMGHFAHGFQVWLDQVKDFERDDRMLLVSCL 228 Query: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 + +L +++E +S+ K+T +V IAL+ I+G Sbjct: 229 KSALGPVNEDNQLEET---LSLLKRTQLAWLVGIALMFIFG 266 >UniRef50_Q1GYJ0 Adenosylcobinamide-phosphate synthase n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GYJ0_METFK Length = 304 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 38/309 (12%), Positives = 90/309 (29%), Gaps = 33/309 (10%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR 59 M + L + L + + ++ F+ G L V L Sbjct: 1 MNFIALIGALALTYYRPHRKLDWLQEIVAPLVQLLERNFNGGNRLQGMTAWALVVLLPSL 60 Query: 60 ALQGVLF------NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + V + + ++ + + + + + A + + G+ Sbjct: 61 LVGAVYYVLLQVNAILGIVFGVALLYFTLRLSQFGPRAEEIIAALRTGNIDEARLLLGQW 120 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 I + ++ L ++ AP+FW ++ G G + + Sbjct: 121 EKI-DSDNFTLTQVAQVSVETVLSRSHYG-LFAPIFWFVILGPAGALFYRLSHIV--TME 176 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 W TP + V L+W P + +A++G E A+ W + + Sbjct: 177 WQPEEATPFND---WARKVFRWLNWPPAFVTAGSFAIVGDFEDAIYCWRSQAETWPDKAM 233 Query: 234 QVLTRLAQFSLARE-------------------PHVDKVETPKAAVSMAKKTSFVVVVVI 274 ++ +L + ++AV + + +++ ++ Sbjct: 234 GMILASGAGALGVRIGEPLPMNGILVFRPEIGLGDAADADYLRSAVGLVWRVLVLLIGLL 293 Query: 275 ALLTIYGAL 283 LLT L Sbjct: 294 LLLTFAHWL 302 >UniRef50_A1TXA8 Adenosylcobinamide-phosphate synthase n=2 Tax=Marinobacter RepID=A1TXA8_MARAV Length = 319 Score = 153 bits (387), Expect = 6e-36, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 75/249 (30%), Gaps = 15/249 (6%) Query: 9 VLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGR----------TLGMTIIAMGVTFLLL 58 ++ + L W + ++ + + T++A+ +L Sbjct: 14 AVLLDWLMGEPRRWHPLVGFGRWASLLEQRLNDQQTFPAQSLLLGVLATLVAVMPAVVLA 73 Query: 59 RALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHG 118 LQ +L LL + L I + H A TA + D G + Sbjct: 74 IFLQFLLEGWLWLLTQVAGVWLAISLRGLAEHGRAVSTALACGDGARARLAVGR-IVSRD 132 Query: 119 VPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARY 178 DE ++ L + +FW +V G G V L A + Sbjct: 133 AAVLSDEGVAAAASESMLENGADA-VFSSVFWYLVAGLPGLVLHRLVNTLDAMWGYRTPR 191 Query: 179 QTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTR 238 + ++WVP RL + YAL+G+ A+ W + + + Sbjct: 192 YL---YFGRCAARLDDAMNWVPARLTALTYALLGNTRLAVKCWREQSRAWDSPNAGPVMA 248 Query: 239 LAQFSLARE 247 +L Sbjct: 249 AGAGALGVT 257 >UniRef50_B0K304 Cobalamin biosynthesis protein CobD n=7 Tax=Thermoanaerobacter RepID=B0K304_THEPX Length = 313 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 77/261 (29%), Gaps = 24/261 (9%) Query: 6 TLLVLIFERLFKLGEHW------------QLDHRLEAFFRRVKHFSLGR--TLGMTIIAM 51 +L + + L E + L+ L + + + + G+T+ Sbjct: 3 VVLAYLLDLLIGDPEGYPHPVRIIGKVVSHLESILRKYAKSNRALKIAGFILCGLTVTLA 62 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 +L + G++ +LI C+ + A ++ D Sbjct: 63 FAATYVLLYIAGLIHPYLKYAFDVLIIYTCLATKDLGKAAGRVYEALAKGDIVEARRRLS 122 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 + + E ++ I+ +AP+F+ +GG V + L + Sbjct: 123 Y-IVSRDIDRLDVENISRGAIETVAENISDGI-IAPMFYAFIGGAPLAVFYKAASTLDSM 180 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVV-----YALIGHGEKALPAWFASLG 226 + + L + +L+++P R+ G + + L + + + Sbjct: 181 VGYG---NEKYLDLGFASAKLDDILNFIPARITGFLIVIAAFLLGYDYKNSWRIFLRDRL 237 Query: 227 DFHTSQYQVLTRLAQFSLARE 247 + +L + Sbjct: 238 KHQSPNSAHGEAAVAGALNIQ 258 >UniRef50_Q1MZQ5 Membrane protein required for beta-lactamase induction n=1 Tax=Bermanella marisrubri RepID=Q1MZQ5_9GAMM Length = 280 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 98/292 (33%), Gaps = 23/292 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFF------RRVKHFSLGRTLGMTIIAMGVT 54 M L ++ +R + + + + ++ K + +G+ ++ Sbjct: 1 MKFIVLLFTVLLQRQTRKEGYERNRRWFKRLLSPFHFEQQSKTMQIMMYVGVVVLPCVAL 60 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 L+ + G+L + +LL+ + + L +G V + Y D A A Sbjct: 61 SALIERMDGLLGSFVSLLLQVALLLYILGRDNVSQKFKDYKNHWHNQDYQAAFYCARNFL 120 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + + AL+ F + +FW ++ G G + L W Y Sbjct: 121 SLEEQAQ-TSPYTLHTTVSKALIRAWFMRFFVFVFWYLLAGIGGAMF----CLLSYWFY- 174 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 + +VL ++W+P RL + +L G ++ DF T+ Q Sbjct: 175 -------SESKIPWMKSVLDTMEWLPSRLLALSMSLAGDFNRSFSTVSKLWTDFQTNADQ 227 Query: 235 VLTRLAQ----FSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGA 282 L + T + + + + + ++V+A LTI+ Sbjct: 228 ALGHTLETFNHQQEKGFDEAGAARTIDESNRLMLRCAILWLLVVAFLTIFAG 279 >UniRef50_Q5ZVD4 Inner membrane protein AmpE n=6 Tax=Legionella RepID=Q5ZVD4_LEGPH Length = 259 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 105/292 (35%), Gaps = 51/292 (17%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFF---------RRVKHFSLGRTLGMTIIAM 51 M L +L L+ ER +Q + + + + + + Sbjct: 10 MKLLVIVLCLLSERFLIHSVSYQRFSWFNNYCLFLKKTIDKNKCFSNPWATLIAIILPIV 69 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 +TFL+ +LQ +LF + L++ L I C+G Y A++ ++ Sbjct: 70 FLTFLVYFSLQSILFGLFGLILSLFIFYYCLGPQN--AFYPILKKQANQTETD------- 120 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 + +N + A +FW I+ G +T + Sbjct: 121 -------------------AIGEYFAEVNSQ-LFAVVFWYIIAGPIAALTYRLITLCKEI 160 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS 231 + + + + + ++L+W+P R+ +++ L+G+ ++ + + + S Sbjct: 161 NF-----------ISTQANQITNILEWIPARITALLFLLVGNFQRGFHLFAQYVLTYPDS 209 Query: 232 QYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGAL 283 ++L ++ + AA ++ + + V++V IAL T+ L Sbjct: 210 NDKILRGCGLQAVRINDTEEVP--MAAAENLVEHATIVLLVFIALFTLVAWL 259 >UniRef50_B3PIN7 Cobalamin biosynthesis protein CobD n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PIN7_CELJU Length = 319 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 73/247 (29%), Gaps = 19/247 (7%) Query: 13 ERLFKLGEHWQ----LDHRLEAFFRRVKHFSLGRTLGMT------IIAMGVTFLLLRALQ 62 +RL + + A R+ R L + ++ + L L Sbjct: 14 DRLLGEPRRFHPLVGFGNLASALEARLNTHPGQRGLALLKGAVALVLLVVPLGLASALLW 73 Query: 63 GVLF---NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGV 119 L + L ++ +G + H +A ++ S A + + Sbjct: 74 WWLVAQVPLLALAFGAVVLYASLGWRSLEEHVRDVDSALAQ--SLPAGRAAVQHIVSRDC 131 Query: 120 PAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQ 179 A + + L+ L + PLFW + G G + L A Sbjct: 132 AAMDESQVVRASLETLLENTSDAIV-GPLFWFTLLGPAGALVYRLSNTLDAM---WGYRS 187 Query: 180 TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRL 239 + +L+ VP RL + +AL+G AL +W + + + Sbjct: 188 ARFNYFGRAAARWDDLLNLVPARLTALAFALVGDTASALGSWRRFARHWASPNAGPVICA 247 Query: 240 AQFSLAR 246 +L Sbjct: 248 GSGALNI 254 >UniRef50_A1WY59 Adenosylcobinamide-phosphate synthase n=2 Tax=Proteobacteria RepID=A1WY59_HALHL Length = 308 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 72/242 (29%), Gaps = 14/242 (5%) Query: 1 MTLFTTLL-VLIFERLF-------KLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMG 52 M L+ + +R+ L ++ LE R + R + Sbjct: 1 MPFPALLIGAWLLDRVLGEPRAGHPLNGFARIAGWLERLLNRNNLPAAERRKAGMLAVGI 60 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 + + +V L + LC+G +R H +R D A Sbjct: 61 LVGPAVLLTTLFTLGPLGWVVELGLLYLCLGGRSLREHALGVAQPLARGDLAGAR-AAVA 119 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + A E ++ L N A LFW +V G G V L A Sbjct: 120 RIVSRDAQAMDAEDTARATTESTLENGNDA-VFATLFWFLVAGAPGAVAHRLVNTLDALW 178 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKAL-PAWFASLGDFHTS 231 + + +L W+P RL + YAL G +A+ A A + S Sbjct: 179 GYRTPR---FTDFGYAAARLDDLLGWIPARLTALTYALAGLRPQAVWSAVRAQAPQWPGS 235 Query: 232 QY 233 Sbjct: 236 NP 237 >UniRef50_C7NCQ6 Cobalamin biosynthesis protein CobD n=9 Tax=Fusobacteriaceae RepID=C7NCQ6_LEPBD Length = 323 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 23/258 (8%), Positives = 66/258 (25%), Gaps = 18/258 (6%) Query: 3 LFTTLLVLIFERLFKLG-EHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRAL 61 L+ + + +F + + L + A F + Sbjct: 7 FIKILIAYVLDLIFGDPQNVVHPVQVIGKIISAGEKVLLRKKYKFLAGAALNIFTVSITY 66 Query: 62 QGVLF-------NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 + +V +++ + + + + D L Sbjct: 67 TSMYLISKSVKISVFFMIIEIYLMYTIFSINSLAREGNRVYRILKEGDIERARKDLSYL- 125 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + ++ ++ AP+F++ +GG +T L + + Sbjct: 126 VSRDTETMDEKMIIRSTMETISENTVDGIV-APMFYMFLGGMPLAMTYKAINTLDSMVGY 184 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFH 229 + V V +++P R+ G++ L + +L + + Sbjct: 185 ---KNEKYMDFGKFSAKVDDVANFIPARITGILIVLASMILGYDYKNSLKIFLRDRKNHS 241 Query: 230 TSQYQVLTRLAQFSLARE 247 + +L + Sbjct: 242 SPNSAHSEASVAGALGVQ 259 >UniRef50_A6F578 Membrane protein required for beta-lactamase induction n=1 Tax=Marinobacter algicola DG893 RepID=A6F578_9ALTE Length = 295 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 60/302 (19%), Positives = 98/302 (32%), Gaps = 28/302 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLG---RTLGMTIIAMGVTFLL 57 M L LL + R W + + F RV G +I + + +L Sbjct: 1 MVLVVFLLAYLLRRKLDAANAWCAEPLWRSAFNRVGAGRSGNEASLWKGLVIILVPSLML 60 Query: 58 L---RALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 L V + + + L+ +L +GA R Y + +R D + + Sbjct: 61 AAGEYYLHTVGWRMAAYPLEFLLMVLLMGAPGWRARLEVYSQSWARGDMQSALHHVMDSL 120 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 A E L L+ F + FW VGG + G LR Sbjct: 121 PAEERGAATSPDEMHLALSRTLMVNVFERFFLVAFWYAVGGIAAAFFVRGIIALRDHW-- 178 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 P + G + +L+W+P RL + + G + L DF Q Sbjct: 179 ------PQVAARPGFARLAEILNWLPSRLLSFTFGVAGDLAGWMKEGKRRLFDFSLRTNQ 232 Query: 235 VLTRLAQFSL---AREPHVDKVETP-----------KAAVSMAKKTSFVVVVVIALLTIY 280 +L A +L A +P P +A + ++ V + ++ALL I Sbjct: 233 LLMGAASAALTGYALDPERFSKIHPDEWADFGGRSLEAIRDLLNRSMLVWICILALLVIA 292 Query: 281 GA 282 G Sbjct: 293 GV 294 >UniRef50_C9KJ54 Cobalamin biosynthesis protein CobD n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJ54_9FIRM Length = 316 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 35/310 (11%), Positives = 81/310 (26%), Gaps = 41/310 (13%) Query: 4 FTTLLVLIFE----RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLR 59 F ++ I R + +L LE + R + + I+ + V F+ Sbjct: 6 FAFIIDTIIGDPRSRFHPVVLIGKLISFLERIYYREEDSDQKKFFCGAILVLLVLFITYD 65 Query: 60 ALQGVL-------FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 G++ + T+ V L+ I + N+ G Sbjct: 66 VAAGIIYFSYSIPWEWGTMAVEALLLAFTISPKSLAKAGRGIYALLLTNELDKARKAVG- 124 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + + ++ +APLF+ ++GG V + + Sbjct: 125 WIVGRDTAKLDESEVARATVETIAENTVDG-VIAPLFFFMLGGVPLAVLYRAANTMDSMI 183 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGD 227 + + + VL+++P R+ V++ + AL Sbjct: 184 GY---KNEKYLYFGKAAAKLDDVLNYIPARITAVLFIIAAWLLGFDSRNALRMMRRDAAK 240 Query: 228 FHTSQYQVLTRLAQFSL--------------------AREPHVDKVETPKAAVSMAKKTS 267 + +L + A+ M + Sbjct: 241 HPSPNGGYAEATVAGALHIRLGGINSYFGKKTFRAYMGEAIERTAPKHIMEAIRMMYTAT 300 Query: 268 FVVVVVIALL 277 + ++ + L Sbjct: 301 VLFLIFVYAL 310 >UniRef50_C7RA12 Signaling modulator of AmpD, AmpE n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA12_KANKD Length = 289 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 87/274 (31%), Gaps = 25/274 (9%) Query: 19 GEHWQLDHRLEAFFRRVKHFSLGRTLGM-TIIAMGVTFLLLRAL----QGVLFNVPTLLV 73 + S + + + L+ G + ++ L + Sbjct: 28 SNANWFVAYQKRLGESFGEQSWFKGWLAEAALILLPVILIFLLFETFGDGFISSLIMLAL 87 Query: 74 WLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQ 133 ++I + C+G R Y + +++D A D + R + Sbjct: 88 AVVILVHCLGPESPRKSLREYFSDIAQDDEQGAYEHAVNFAG----KEADDWAQTQRMVS 143 Query: 134 NALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVL 193 A+ R Y A + W ++ G G + + ++ S + Sbjct: 144 QAIFTETQRRYAAVVIWFVLLGPAGALLYRLL-----------DWYLANNPEGSLSAPLK 192 Query: 194 HVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLA-----REP 248 ++DWV R++ + Y L G + DF+ +++ ++ Sbjct: 193 SIMDWVAGRISVLAYLLAGDMASGVSKIKRKFFDFNVDGMELVEETGVAAIGPVLDCETE 252 Query: 249 HVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGA 282 KV A+ + ++T ++ +A++++ G Sbjct: 253 QKQKVAENLCALKLTERTGVILFAFVAVMSLLGW 286 >UniRef50_Q6ALU7 Cobalamin biosynthesis protein cobD n=1 Tax=Desulfotalea psychrophila RepID=COBD_DESPS Length = 330 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 29/273 (10%), Positives = 67/273 (24%), Gaps = 28/273 (10%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQ---------LDHRLEAFFRRVKHFSLGRTLGM--TII 49 M LL +I + + ++ + + RV L + + Sbjct: 1 MFSIKILLAIILDLFLGDPSCYPHPVRCIGLAINRWEKFYRPRVAQPFWAGVLTVCSVLT 60 Query: 50 AMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 + +T + L + + T +L+ + ++ A A + + + Sbjct: 61 LVILTLAVFFTLLAIFPPIVTDFAAVLLLYTTVAIKDLKKESMAVYRALIQGEDLPKTRK 120 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGP---------- 159 + ++ + +APLFW + + P Sbjct: 121 LLARIVGRDTENLDRPAIIRATVETVGENLADGI-IAPLFWAVALSIFAPLLGVKAIVLA 179 Query: 160 -VTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEK-- 216 V M Y + L + + +W+P R + I Sbjct: 180 SVGAMSYKAINTMDSMLGYKNERYILFGRAAARLDDWANWLPARCTALGIVAISFMAGYN 239 Query: 217 ---ALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 A + + +L Sbjct: 240 GPQAWKIFKRDRYQHTSPNAGHPEAALAGALNI 272 >UniRef50_B2UXD7 Cobalamin biosynthesis protein CobD n=4 Tax=Clostridium RepID=B2UXD7_CLOBA Length = 316 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 27/257 (10%), Positives = 71/257 (27%), Gaps = 18/257 (7%) Query: 4 FTTLLVLIFERLFKLGEHWQL--------DHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF 55 L LI ++ + F++ T + I A + Sbjct: 6 IGFFLDLILGDPENPIHPVRIIGKFASKLEMLTRKLFKKCLKIGGLITWLIVISATFIVN 65 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 + + +L+ +I CI A + + ++ +D A + Sbjct: 66 FFILKIASGFNKYLGILLSGVIIYFCISAKGLVTEGYKVISLVRNDDIKAARKQLS-FIV 124 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 + ++ ++ +AP+F+ +GG + L + + Sbjct: 125 GRDTENLEKQDIIRAVIETIAENMSDGI-IAPIFYAGLGGAPLAMAYKAVNTLDSMFGY- 182 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV-----VYALIGHGEKALPAWFASLGDFHT 230 + + V +++P R+ G+ L +++L + + + Sbjct: 183 --KNDKYMEFGYFSAKLDDVFNYIPARITGILIILSSMILGYDFKRSLKIYKRDRYNHSS 240 Query: 231 SQYQVLTRLAQFSLARE 247 L + Sbjct: 241 PNSAHPEAAMAGILGIQ 257 >UniRef50_C9RHK7 Cobalamin biosynthesis protein CobD n=3 Tax=Methanocaldococcus RepID=C9RHK7_METVM Length = 314 Score = 136 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 67/224 (29%), Gaps = 11/224 (4%) Query: 32 FRRVKHFSLGRTLGM-TIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLH 90 + + F G + + TI +G+T + L +L + + ++ IG + Sbjct: 47 RNKTRDFIFGTLIALITITTVGITSFFIEKLIFLLPTPINYITYGIVLSTAIGYKSLFDF 106 Query: 91 YHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFW 150 + + A + + +E +++ I A LF+ Sbjct: 107 CKRPVNLLKEGNLEKARE-AVQHVVSRDTSQLDEEHVLSASIESLSENITDSIIGA-LFY 164 Query: 151 LIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYAL 210 + G G L A + + + V++++P RL+G++ + Sbjct: 165 ATLFGMPGAFVYRAINTLDAM---MGYKNEKYLWYGKFSARLDDVVNFIPSRLSGILLIV 221 Query: 211 I-----GHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPH 249 G + A+ + + +L Sbjct: 222 TSPLYGGSVKGAIYGFLREANKVSSPNSGYTMATLANALNITLE 265 >UniRef50_C6PE10 Cobalamin biosynthesis protein CobD n=3 Tax=Thermoanaerobacterales RepID=C6PE10_CLOTS Length = 320 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 29/258 (11%), Positives = 72/258 (27%), Gaps = 20/258 (7%) Query: 5 TTLLVLIFERLFKLGEHWQLDH----RLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 +L LI +L +E R++ + + V F + Sbjct: 8 AYILDLIIGDPQGYPHPVRLIGKLISFIERNLRKITKTGRQERIAGYFLCAIVVFTSYIS 67 Query: 61 LQGVLFNV------PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 +++ + + +L+ C+ + + RND M Sbjct: 68 GYFIIYMLKEVNVYLGKISEVLLIYTCLATNDLAKSANKVYEPLKRNDLVEARKMLS-FI 126 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + ++ I+ +APLF+ +GG + + L + + Sbjct: 127 VSRDTENLDLGDIIRGTVETVAENISDGI-IAPLFYAFIGGVPLALAYKASSTLDSMVGY 185 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV-----VYALIGHGEKALPAWFASLGDFH 229 + + + VL+++P R+ G+ + L + + Sbjct: 186 ---RNEKYEDIGYASAKLDDVLNFIPSRITGLLIVASSFLLGYDYKNSFYILKRDRLKHE 242 Query: 230 TSQYQVLTRLAQFSLARE 247 + +L + Sbjct: 243 SPNSAHGEAAIAGALGVK 260 >UniRef50_B8KJ07 Putative uncharacterized protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KJ07_9GAMM Length = 292 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 95/310 (30%), Gaps = 47/310 (15%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTI---IAMGVTFLL 57 MT ++ L +++ + Q D L + V + L + + + Sbjct: 1 MTFLAMIIALSLQQVIQPDNFLQRDRWLFLWDDFVAARLSAQILRVLTTLGVIAVAAYWA 60 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAY----------------------- 94 L L G LF + LL + + +G Y Sbjct: 61 LSVLDGWLFGLAELLATAGLFVWSLGRDDFHTVLERYEARASENPQAAGAALEGLWAPEP 120 Query: 95 ---LTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL 151 A D A + + E G G + + L++ + + APLF+ Sbjct: 121 EAMADALHDGDLQADSQDSEEAPGDDGQQEGSTKTPDRDQALQRLVYSGYARWFAPLFYF 180 Query: 152 IVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 V G V A L A G VL DW+P R+ G+ +AL Sbjct: 181 AVAGPIAAVVYRAVALLAA------------DNRGPGYLQVLRWADWIPARILGLTFALS 228 Query: 212 GHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVV 271 G + T Q+L LA + +EP +++ + + Sbjct: 229 GDFMAVSQRAPLAHFADTTPAPQLLCELADVACNQEPGARVFGDILY------RSAGLWL 282 Query: 272 VVIALLTIYG 281 + ++ + I G Sbjct: 283 LGLSAVLILG 292 >UniRef50_B7RSR6 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RSR6_9GAMM Length = 279 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 102/291 (35%), Gaps = 26/291 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFL---L 57 MT ++ L+ ERL L + + + ++ LG L L + Sbjct: 1 MTFLALIIALVLERLSPLEDWLDGGGWFDRWQGQLASLGLGGGLQAVFSVGVPVVLAHLV 60 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 L ALQ +LF + + +L+ L G + Y + R D A Sbjct: 61 LNALQPLLFGLAWMAAAVLLLLYSFGRSNLGAFQERYRSQCRREDFQAAWLATSSEFKWF 120 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLAR 177 D + +Q L+ N++ + A LF+ ++ G G + Y Sbjct: 121 EPKEQLDAILIHKRIQQGFLYENYQRWFAVLFYFLLLGPLGALAYRL-------LYMTCE 173 Query: 178 YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLT 237 + + +L +DWVPVRL + L G+ + + +L S +VL Sbjct: 174 GE-------ASRQHILFYVDWVPVRLLAAAFTLTGNFVASADELWDALRAPGMSSSEVLF 226 Query: 238 RLAQFSLAREPHVDKVETPKAAV---------SMAKKTSFVVVVVIALLTI 279 +A + ++ D+ ++ ++ S V VIA L + Sbjct: 227 TVAMAATGQDRVPDEEGGLSGQRAAIENEMFAALVRRASVCWVAVIAGLVV 277 >UniRef50_A6UUW7 Probable cobalamin biosynthesis protein cobD n=9 Tax=Methanococcales RepID=COBD_META3 Length = 311 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 81/264 (30%), Gaps = 22/264 (8%) Query: 3 LFTTLLVLIFERL--FKLGEHWQ------LDHRLEAFFRRVKH----FSLGRTLGMTIIA 50 + ++ IF L W + L++ + K+ F T+ + I Sbjct: 8 FLSIIIDRIFGELPEKIHPTVWIGNIISFFEKILKSTHSKNKYKDFIFGTLTTISVLFIV 67 Query: 51 MGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMA 110 G + + + + +V+ + IG + L D + Sbjct: 68 FGAIYGVEILINNIQNIYIKYIVYSFLISTTIGYKSLLQFSKTPLNHIKNKDIESAKKSV 127 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 + + +++A I +APLF+ I G G + A Sbjct: 128 QC-IVSRNTDKLDTKHILSASIESASENITDSI-IAPLFYAIFFGLEGAFIYRAINTMDA 185 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASL 225 + + + +L + + +++P R++G++ L G+ +KAL + Sbjct: 186 MLGYRNKKYEYYGKLP---AILDDIANFIPSRISGILLVLFAPLYGGNIKKALNGFIKEG 242 Query: 226 GDFHTSQYQVLTRLAQFSLAREPH 249 + + SL Sbjct: 243 HKTPSPNSGYTMAVMANSLNMTLE 266 >UniRef50_C9MYC2 Cobalamin biosynthesis protein CobD n=3 Tax=Fusobacteriaceae RepID=C9MYC2_9FUSO Length = 334 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 76/261 (29%), Gaps = 19/261 (7%) Query: 1 MTL-----FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF 55 M +L LIF K+ Q+ ++ F + + G +G T++ + V Sbjct: 1 MNFLIKIWIAFILDLIFGDPEKITHPVQIIGKMITFLEKKLYGKKGSFIGGTVLGILVVA 60 Query: 56 LLLRALQGV--LFNVPTLL--VWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 + G L + +L + + + + + Sbjct: 61 STFLVMYGFVKLTKIVKVLEILEIYLMYTVFSVKSLAREGKRVYKILKLGNLKVAREKLS 120 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 L + ++ + +AP+F++ VGG + L + Sbjct: 121 YL-VSRDTEKMDKVMIIRSTMETISENMVDG-VIAPMFYMFVGGLPLAMAYKAINTLDSM 178 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVR-----LAGVVYALIGHGEKALPAWFASLG 226 L + + + + V++++P R + Y L + + A + Sbjct: 179 ---LGYKNEKYAKFGTFSAKLDDVVNFIPARISGIFITAASYILRYNYKNAWKIFKRDRK 235 Query: 227 DFHTSQYQVLTRLAQFSLARE 247 + + +L + Sbjct: 236 NHASPNSGHSESAVAGALGVQ 256 >UniRef50_C4RPJ0 Cobalamin biosynthesis protein cobD (Fragment) n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RPJ0_9ACTO Length = 332 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 63/252 (25%), Gaps = 16/252 (6%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF------SLGRTLGMTIIAMGVTFLLLR 59 + + L W ++ + G T + + V + Sbjct: 75 LVAGYALDSLLGDPRRWHPVAGFGRAAGALERRVYRPDRAAGTTFTALAVGVPVLVGVAA 134 Query: 60 ALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGV 119 + V ++ +G +R A D A G L Sbjct: 135 TVATRRRPVGRAVLMAAATWTVLGGRTLRHEAKMMGRALRGGDLPAARRRLGHLCG-RDP 193 Query: 120 PAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQ 179 + +++ + +APL W V G G + L A Sbjct: 194 STLDEPELARATVESVAENTSDA-VVAPLLWGAVAGLPGLLGYRAANTLDAMV---GHRS 249 Query: 180 TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASLGDFHTSQYQ 234 + R + + +L+ P RL G++ + G +A W D + Sbjct: 250 PRYARFGTPSARLDDLLNLAPSRLTGLLTIAVAPAAHGDRGRAWRVWLRDRNDHPSPNAG 309 Query: 235 VLTRLAQFSLAR 246 L Sbjct: 310 QCEAAMAGVLGV 321 >UniRef50_Q73JM8 Cobalamin biosynthesis protein CobD n=1 Tax=Treponema denticola RepID=Q73JM8_TREDE Length = 357 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 72/268 (26%), Gaps = 43/268 (16%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF------- 55 +L I + + L + + F G+ + Sbjct: 22 FCAIILDFILGDPYSFPHPVKFIGSLIKKEKVLARFCFSSPRGLKFAGFLIVIFNVSLSF 81 Query: 56 -LLLRALQGVL-FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L+ L+ + + + + + I C+ A ++ TA + R +A Sbjct: 82 CLVFFFLKLLYPYKILYFVFSVWISYTCLAARCLQKESIKVFTALQMSLEEGRKQIAN-- 139 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + DE+ R + +APLF++++ G G + Sbjct: 140 IVGRD-AEPLDEKGVSRACVETIAENTSDGVIAPLFFMMLLGPAGGIAYKAVNT---MDS 195 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG------------------- 214 L + L V +++++P RL+ ++ L G Sbjct: 196 MLGYKNEKYADLGFFPAKVDDIVNYIPARLSALL-ILAGSFFCKLRRPAQEGSQKRISNK 254 Query: 215 --------EKALPAWFASLGDFHTSQYQ 234 ++ W + Sbjct: 255 IIPKLATIKRGFKIWRRDCRKHSSPNSA 282 >UniRef50_A1TZ82 Signaling modulator of AmpD, AmpE n=2 Tax=Marinobacter RepID=A1TZ82_MARAV Length = 295 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 88/301 (29%), Gaps = 28/301 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV------KHFSLGRTLGMTIIAMGVT 54 M+L L+ + R +H D +F R + S+ R + ++ Sbjct: 1 MSLVVFLIAYVIRRRLDRADHLAGDEVWRNWFHRWGRVEAGQERSVWRGALLVVLPSLAL 60 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 + + L++ ++ +GA R AY A R D A E Sbjct: 61 AGAWALSSEAGYRYALYPLELVLMVVLMGAPGWRKVLRAYSDAWRRGDMQAAWHHVQERL 120 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 A + AL+ F + +FW VGG G L Sbjct: 121 PASERGAALSPEAMHLSVSRALMVSVFERFFLVVFWYAVGGIALAFLARGLVAL------ 174 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 Q P + ++ W+P RL + L G F Sbjct: 175 --AGQWPQAAARERYQRAARLIGWIPSRLLSCTFGLAGDLAGWSREIRKVFPGFGKKTAD 232 Query: 235 VLTRLAQFSLAR---------EPHVDKVE-----TPKAAVSMAKKTSFVVVVVIALLTIY 280 VL A SL E H ++ + A + ++ V + ALL I Sbjct: 233 VLMISANGSLTGYALDPARFSELHPEEWPDFGGRSLSAIRDLLNRSMLVWICAFALLVIA 292 Query: 281 G 281 G Sbjct: 293 G 293 >UniRef50_Q75FR2 Cobalamin biosynthesis protein cobD n=4 Tax=Leptospira RepID=COBD_LEPIC Length = 315 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 25/256 (9%), Positives = 67/256 (26%), Gaps = 17/256 (6%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHF--SLGRTLGMTIIAMGVTFLLLRAL 61 + L+ LI L + +L + S G+ + + Sbjct: 7 ISILVDLILGDPKDLPHPVRAIGKLARALEKFFRNNCSSEEIAGILTSCLVYLISFIIPF 66 Query: 62 QGVLFN-----VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 V F + L+ ++I I + H A + + + + Sbjct: 67 LSVQFANQLHWILGELLSIMIIYTTIAIRDMIDHSKEVYDALVQTNLPLARKKVSK-IVA 125 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 + +++ + PLF+ + GG + L + + Sbjct: 126 RDTENLSESEIIRACVESTAENLVDGI-TTPLFYAVFGGPAWAMLYRSINTLDSLFGYKN 184 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFHTS 231 + + + +++P R+ + L + + +L + Sbjct: 185 KKYLRFGSFP---ARIDDLANYLPARITSYILVLSSLFLGYNFKNSLYILQRDGKKHPSP 241 Query: 232 QYQVLTRLAQFSLARE 247 + +L + Sbjct: 242 NSGLTEAAVAGALEIQ 257 >UniRef50_Q12UB2 Adenosylcobinamide-phosphate synthase n=4 Tax=Methanosarcinaceae RepID=Q12UB2_METBU Length = 331 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 36/311 (11%), Positives = 88/311 (28%), Gaps = 33/311 (10%) Query: 4 FTTLLVLIFERLFK-LGEHWQLDHR---LEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLR 59 F +L F+ L L FF++ + +T G+ + + F Sbjct: 14 FVLILATGFDLLIGEPPTALHPVVWIGNLIGFFKKKVPATHKKTYGVVFALIVILFAASI 73 Query: 60 ALQGVLFNVPTLLVWLLIGLL-------CIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 A +L + + ++ L+ ++ + D + Sbjct: 74 AYVVLLIANLSFIPEFVVLLIEAYFLKSTFAIRRLLEAAMEVYGELVKGDLVSARKKLS- 132 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + + + + ++ L+PLF+ ++ G +G + + + Sbjct: 133 MYVSRDTSQLTEGQVSSSVIETCSENFVDGI-LSPLFYYVIFGPYGLIGAYIFKAVSTLD 191 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG-------------EKALP 219 + + + VL+W+P R+ V + + G A Sbjct: 192 SMVGYMNEKYREIGYFSAKTDDVLNWIPARICVV-FIMAGSFLSSVLLKSKGLDHMGAFR 250 Query: 220 AWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSM-----AKKTS-FVVVVV 273 + +L +S+ KK + + + Sbjct: 251 CASTDCMTTPSPNSGYPMAAIAGTLGVRLEKPNTYVIGKNLSLPKTEDIKKAAEVIGMSS 310 Query: 274 IALLTIYGALV 284 I ++ I+ AL+ Sbjct: 311 IFVVIIFVALI 321 >UniRef50_O27460 Probable cobalamin biosynthesis protein cobD n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=COBD_METTH Length = 297 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 30/281 (10%), Positives = 75/281 (26%), Gaps = 25/281 (8%) Query: 19 GEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLF--NVPTLLVWLL 76 + + +++ + I+ + V L + + L++ + Sbjct: 21 PHRLHPVVWMGSAVEWMRNILGNSRISGIILTIAVAAPFTLPLFLINHLQDPLNLIISSI 80 Query: 77 IGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNAL 136 + I + + D + + + DE+ ++ Sbjct: 81 LLSAVISIRMLVTSALEVGGSLKE-DIEDARRKLS-MLVSRDTTSLSDEQITSAAIETLT 138 Query: 137 LWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVL 196 I AP+F+ I+ G G L A +L + +L Sbjct: 139 ENITDS-VTAPIFYFILLGLPGAFLYRVVNTLDAMVGYLDSENRDIGWFP---ARLDDIL 194 Query: 197 DWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVD 251 +++P R+ GV+ + + + A +L+ + Sbjct: 195 NYIPSRITGVLMVPAALLLGMNWRGSFRILLRDARRTPSPNSGFTMAAAAGALSVQLEKP 254 Query: 252 ------------KVETPKAAVSMAKKTSFVVVVVIALLTIY 280 E AV ++ T + + A + + Sbjct: 255 GVYVLGDPCDGLDNEKLLDAVKLSSLTLILFTLAAAGVMLV 295 >UniRef50_Q15WT1 Adenosylcobinamide-phosphate synthase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15WT1_PSEA6 Length = 351 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 31/272 (11%), Positives = 64/272 (23%), Gaps = 36/272 (13%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFRRVK------------------HFSLGRTLGMT 47 L L+ +++ + + R++ F + Sbjct: 14 MLFALLLDKVLGEPKRFHPLVGFGHLANRLEAKANAQLFTAQQTSLVKTRFKGALCWLIL 73 Query: 48 IIAMGVTFLLL--------RALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAAS 99 ++ + +T +L + VL L+ I L IG ++ H + Sbjct: 74 VLPLPMTLWVLNYGVMQYAMSNDAVLLAGCMFLLNASILYLAIGMQSLKEHAMQIYQPLA 133 Query: 100 RNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGP 159 D + + +++ L +A LF+ +GG Sbjct: 134 EGDLAQARHFTSYM-VSRDTTELTPNNMSRAAVESVLEN-GHDGVIASLFYFAIGGAPLA 191 Query: 160 VTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG----HGE 215 V L A L W+ ++Y L Sbjct: 192 VLHRLSNTLDAM---WGYKSPRFLHFGWWAARTDDHLGWLSAYCTSLLYVLAAPAPIRFT 248 Query: 216 KALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 AW + + +L Sbjct: 249 HLARAW-QQAKGYKSKNGGRCMATGAGALGFT 279 >UniRef50_B2A0G4 Cobalamin biosynthesis protein CobD n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A0G4_NATTJ Length = 324 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 79/250 (31%), Gaps = 17/250 (6%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ 62 L L+ ++E++ + W + LE + +TII +GVTF L L Sbjct: 33 LIALLINFLWEKIVTISTSWGFNFLLEG--NNFSGLAKFAGFLITIIVVGVTFTLSYYLA 90 Query: 63 GVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAG 122 + ++ +L+ + + H L S D + + V Sbjct: 91 SMH-----FIIDILLIYFALSYKSLVEHLARVLCPLSHGDLIKAREELSK-IVGRDVDYL 144 Query: 123 CDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPH 182 + ++ + + +APLF+ +GG ++ L + + P+ Sbjct: 145 EEAEIARGGIETSAESLCDGI-IAPLFFAFIGGAPLVMSYKAVNTLDSMIGYNFY---PY 200 Query: 183 HRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFHTSQYQVLT 237 L + VL+ +P RL V + + K L + Sbjct: 201 KDLGFASAKLDDVLNLIPARLTAVFILITSLLTKKNFVKGLQVMRHDASKHPSPNAGFSE 260 Query: 238 RLAQFSLARE 247 + L + Sbjct: 261 SVMAGILNIK 270 >UniRef50_A8MIW5 Cobalamin biosynthesis protein CobD n=3 Tax=Clostridia RepID=A8MIW5_ALKOO Length = 316 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 30/265 (11%), Positives = 77/265 (29%), Gaps = 23/265 (8%) Query: 1 MTLFTTL-LVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSL-----GRTLGMTIIAMGVT 54 M L + + L + + + + + ++ S G L + Sbjct: 7 MVLGSVIFLDYVLGDPPNWPHPIRYIGWIISKYEKIIRRSGINLKIGGFLLLGFSMGTTL 66 Query: 55 FLLLRA--LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 FL + G++ + + + + C+ A + L A D Sbjct: 67 FLATAIKNIVGLIHPMVSFIFTTYLLYTCLAAKCLDLEARKVYEAVYEKDIEKGRKRLSY 126 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWG-----PVTLMGYAF 167 L + + ++ LAPLF+++VG +G + Sbjct: 127 L-VGRDTSNLTMDEIIRGVIETVAEN-TIDGVLAPLFYMMVGMYFGYPLEFALGYKVINT 184 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGH-----GEKALPAWF 222 L + ++ Q P+ + + +++++P R+ ++ G ++ Sbjct: 185 LDSMVGYV---QEPYREIGYASAKLDDIVNYIPARIGSILMVFAGGALGHPMKEGFRILR 241 Query: 223 ASLGDFHTSQYQVLTRLAQFSLARE 247 + + L + Sbjct: 242 RDRRNHKSPNCGYPESAVAGLLQIQ 266 >UniRef50_A5VM86 Adenosylcobinamide-phosphate synthase n=8 Tax=Lactobacillus reuteri RepID=A5VM86_LACRD Length = 319 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 77/261 (29%), Gaps = 23/261 (8%) Query: 2 TLFTTLLVLIFERLFKLGEHWQ---------LDHRLEAFFRRVKHFSLGRTLGMTIIAMG 52 L +L IF+ L W + + + F R + G + Sbjct: 3 ILIMVILAFIFDFLLGDPHSWPHPVKAMGHLIAYLTKKFNRSNYSTKRKKWFGALTWLIT 62 Query: 53 VTFLLLRALQGVLFN----VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARAT 108 V L + F ++V + C+ ++ + + + +N+ + Sbjct: 63 VGGSGLITYILMRFAAINYYLYMIVGTYLCYTCLSMRQLAIEAEKIMKSLQQNNLNKARQ 122 Query: 109 MAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFL 168 G + + E ++ + +APLF+L++G GPV + Y + Sbjct: 123 QVG-MIVGRDTNQLSAEEVTKATIETVAENTSDG-VIAPLFFLVIG---GPVLGIMYKAI 177 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFA 223 + + + ++VP R+ ++ + +A+ Sbjct: 178 NTLDSMIGYQNEKFRAFGEVSARIDDIANYVPARITWLLLIISSWLLRDDTREAIAVGER 237 Query: 224 SLGDFHTSQYQVLTRLAQFSL 244 + + +L Sbjct: 238 DCEKHLSPNSAFSEAVVAGAL 258 >UniRef50_B1HXM0 Cobalamin biosynthesis protein n=2 Tax=Bacillaceae RepID=B1HXM0_LYSSC Length = 318 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 63/243 (25%), Gaps = 17/243 (6%) Query: 16 FKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGV-----TFLLLRALQGVLFNVPT 70 W + +++ + GM + V L+ L + + Sbjct: 24 LPHPVRW-IGKLIQSQTALWNRGKWRKLRGMVMALAVVGTTMFVVTLILLLSYQVSLIFG 82 Query: 71 LLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLR 130 +LV L+ + + ++ A + D + ++ Sbjct: 83 ILVEGLLIGIGLAQRSLKEAALAVYEPLVKGDFAEARVKLS-WIVGRDTEKLGEDEIVRG 141 Query: 131 ELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGID 190 ++ + APLF+ V G G L + + Sbjct: 142 FVETVSENTSDG-VTAPLFYAFVFGAIGLWGYKAVNTLDSMVGYQ---YETFKDFGMFSA 197 Query: 191 AVLHVLDWVPVRLAGVVYAL------IGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSL 244 + VL+++P R+ G + L + L W + L L Sbjct: 198 KLDDVLNFIPSRITGFLMVLGTKNETSYSFGQRLKRWAQDAKKHPSPNSGYLEAATAVQL 257 Query: 245 ARE 247 + Sbjct: 258 GVQ 260 >UniRef50_Q180T1 Cobalamin biosynthesis protein n=9 Tax=Clostridium RepID=Q180T1_CLOD6 Length = 323 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 20/266 (7%), Positives = 68/266 (25%), Gaps = 25/266 (9%) Query: 1 MTLFTTLL----VLIFERLFKLGEHWQLDHRL----EAFFRRVKHFSLGRTLGMTIIAMG 52 M++ + + LI + + +L + R+V G I+ + Sbjct: 1 MSILSIYIGYVTDLIVGDPYSFPHPVRFIGKLINFTQGIIRKVSKNDRQLKFGGFILWLI 60 Query: 53 VTFLLLRALQGV-----LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 + + + +++V I + ++ + Sbjct: 61 TVGITYLTTYAIVKLFSFNILLSIVVNSFIIYTTLATKCLKDEALKIYNVLKTENIEKSR 120 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 + + ++ +AP+F+ +GG + Sbjct: 121 IQLSY-IVGRDTTNLSEPEIIRATVETVAENTVDGI-IAPMFYAFIGGAPLAMAYKAINT 178 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG------EKALPAW 221 L + + + + + + +++P R++ ++ + G Sbjct: 179 LDSTVGY---KNKKYKDIGFASAKIDDIANYIPARISVILMTI-GSFFLNYNYRNCFKIS 234 Query: 222 FASLGDFHTSQYQVLTRLAQFSLARE 247 + + +L + Sbjct: 235 IRDRKNHKSPNCAFSEGAVSGALGIQ 260 >UniRef50_A4J805 Adenosylcobinamide-phosphate synthase n=2 Tax=Clostridiales RepID=A4J805_DESRM Length = 315 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 16/226 (7%) Query: 33 RRVKHFSLGRTLGMTIIAMGVTF------LLLRALQGVLFNVPTLLVWLLIGLLCIGAGK 86 R+ G LG ++ +GV +L L ++ L+V L + + Sbjct: 40 RKFAGGPTGLRLGGILLVLGVVTITFMGTWILIRLAEMIHPYLGLIVHLWLLSTTLAVKS 99 Query: 87 VRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLA 146 + H A +R D + + L + + ++ ++ Sbjct: 100 LSQHAMAVAEPLARGDLNTARSKVA-LIVGRDTDKLNERGIARATVETVAENTVDGI-IS 157 Query: 147 PLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 PLF+ +GG + + + L + + +++P RLAG Sbjct: 158 PLFYAFIGGAPLAMVYKAINT---MDSMIGHRDEKYLHLGWAAARLDDLANYLPARLAGF 214 Query: 207 VY--ALI---GHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 +Y + G + A + + +L + Sbjct: 215 LYPWLAVFYPGGFFATVRAILRDAPKHPSPNSGIPEAAVAGALGIQ 260 >UniRef50_Q3AE10 Cobalamin biosynthesis protein CobD n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AE10_CARHZ Length = 319 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 35/317 (11%), Positives = 82/317 (25%), Gaps = 44/317 (13%) Query: 2 TLFTTLLVLIFERLFKLGEHWQ---------LDHRLEAFFRRVKHFSLGRTLGMTIIAMG 52 T ++ LI + +FK + + + + G ++ + Sbjct: 4 IFITVVIALILDIVFKDPGQDYHPVALIGRYIAFIEKKLYPKKPAKKALILCGGLLVGLT 63 Query: 53 VTFLLLRALQGVLFNV-PTLLVWLLI----GLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 + + A F L ++ I + + + Sbjct: 64 LLPVSFIAFIYQHFTQKLPFLFQVVFQGGGLFFAIAPTGLAFSVNTIKNHLKDGNLAEAR 123 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 G + + L++ +AP+FW ++GG G Sbjct: 124 KSLG-MIVSRDTRELPVTEVVRGSLESLAENTGDG-VVAPIFWYLIGGLPGVWFYRTVNT 181 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWF 222 L + + + + +L+++P R+ GV+ L ++A+ W Sbjct: 182 LDSMVGYKSERYL---YFGRIAAKLDDLLNYLPARITGVLMVLAAFILRYDWKRAIKTWL 238 Query: 223 ASLGDFHTSQYQVLTRLAQFSLARE-----------------PHVDKVETPKAAVSMAKK 265 + + + SL TP+ K Sbjct: 239 RDAKKHPSPNGGIPESVLAGSLGVRLGGENIYHGQKSFRAYLGEPLNPLTPEVIDKALK- 297 Query: 266 TSFVVVVVIALLTIYGA 282 V ++ ++G Sbjct: 298 --LFWFTVFLMVLLFGG 312 >UniRef50_A4A5I5 Transmembrane protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A5I5_9GAMM Length = 261 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 22/282 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 MT ++ L ++ + Q D L + R ++ GR + + + Sbjct: 1 MTFLAMIIALSLHQVIQPDSFLQRDTWLLQWNR----WATGRIVSPAVRVAITLIAVTLV 56 Query: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 + L + L LL L G L + TA R ++ A + + Sbjct: 57 VVWALATIDDWLFGLLELLATAGLFVWSLGRADFHTALERFEARAATDPLAATAALEALW 116 Query: 121 AGCDEREYLREL-QNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQ 179 A E E L++ + + APLF+ +GG V + L Sbjct: 117 APIHEPESHEPGPMERLVYSGYARWFAPLFYFALGGVLAAVLYRVVSVL----------- 165 Query: 180 TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRL 239 + S +L DW P R+ G+ +AL G T Q+L L Sbjct: 166 AEREQPPSAYTQLLRWADWAPSRVLGLTFALTGDFMAVSKRAPLKHFADATPASQLLQEL 225 Query: 240 AQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYG 281 A + ++ +++ + +V ++++ I+G Sbjct: 226 AGVACNHGESARELGNILY------RSAGLWLVFLSVVLIFG 261 >UniRef50_A9KMP3 Cobalamin biosynthesis protein CobD n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMP3_CLOPH Length = 339 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 30/240 (12%) Query: 33 RRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYH 92 +R + + + I G+ +L + G++ + LLV ++ + +R+ Sbjct: 50 KRGELVAGAVLCFIVISISGLIPFVLLYIAGIIHPMVRLLVETVMCYQILATKSLRVESM 109 Query: 93 AYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLI 152 + D + + + +E ++ + +AP+ +L Sbjct: 110 KVYRELEKEDIVRARYQLS-MIVGRDTDSLTEEGIIKAAVETVAENTSDGI-IAPMLYLA 167 Query: 153 VGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI- 211 +G GP+ Y + +A + + V +++P R+A ++ + Sbjct: 168 IG---GPILGFIYKAINTMDSMVAYKNERYLYFGRVAARLDDVANFIPSRIAALLMIIAS 224 Query: 212 ---------------------GHG---EKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 G ++A + + + +L + Sbjct: 225 GICEVLDFIFSKRISTSSNKDGKFYSMKRAAKTFLRDRYQHASPNSAQTEAVCAGALGIQ 284 >UniRef50_C0GDW1 Cobalamin biosynthesis protein CobD n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDW1_9FIRM Length = 316 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 10/199 (5%) Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L + ++ V + V +++ + + + + D A + Sbjct: 65 AVLFMVWAASLIHPVAGVAVSVVLLSTTLAVRSLSEAAQDVIKPLASGDLPGAR-YAVSM 123 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + + ++ APLF+ +VGG + Sbjct: 124 IVGRDTALMDEPEVARATVETVAENTVDG-VTAPLFYALVGGLPLAMAYKAVNT---MDS 179 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDF 228 L + + V +W+P R+ V + + A A Sbjct: 180 MLGYKNDRYLYFGRAAAKLDDVANWLPARINVVAMLVASRLLSLNTGNAWQAVKTDGQKH 239 Query: 229 HTSQYQVLTRLAQFSLARE 247 + + L +L Sbjct: 240 PSPNSGLAEALTAGALDIT 258 >UniRef50_B7ATE5 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ATE5_9BACE Length = 326 Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats. Identities = 29/265 (10%), Positives = 64/265 (24%), Gaps = 24/265 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEH---------WQLDHRLEAFFR----RVKHFSLGRTLGMT 47 M + I + + + A + R + + G Sbjct: 7 MQMLALPAAFILDMILGDPHTGMHPICLIGNLIAMLDSALNKENVSRKRKIARGALTAAA 66 Query: 48 IIAMGVTFLLLRALQGVLFNVPTLLVWLLIG-LLCIGAGKVRLHYHAYLTAASRNDSHAR 106 +I + F L+ + N+ V + I A ++ A D+ Sbjct: 67 VIVISTAFPLIIEIISFNINIWLFFVAETVMDYFVIAAKSLKKESMLVCAAMEAGDTEGA 126 Query: 107 ATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYA 166 A + + E ++ + +AP+F+ + G G Sbjct: 127 RR-AVSMIVGRDTKVLDKEGIIKAAVETVAENSSDG-VIAPVFYTALCGAAGGFFYKSVN 184 Query: 167 FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG-----EKALPAW 221 L + + VL+++P RL+ + A + Sbjct: 185 T---MDSMLGYINDRYEAFGKAAARLDDVLNYIPSRLSALFIIAAAKFTGLNAAGAWKIF 241 Query: 222 FASLGDFHTSQYQVLTRLAQFSLAR 246 + +L Sbjct: 242 RRDRMKHASPNSAQTESACAGALDV 266 >UniRef50_A9A601 Cobalamin biosynthesis protein CobD n=4 Tax=Thaumarchaeota RepID=A9A601_NITMS Length = 323 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 36/324 (11%), Positives = 90/324 (27%), Gaps = 47/324 (14%) Query: 1 MTLFTTLL---VLIFERLFKLG-EHWQLDHRLEAFFRRVKHFSLGR-----TLGMTIIAM 51 M L + ++ L+ + +F + + ++ + G + Sbjct: 1 MILESLIIVGFALVIDLVFGDPKNRYHPTAWIGGLIAKLTPLGQNQNQKLERFGGIFVVT 60 Query: 52 GVTFLLLRALQGVLFNVPTL-----------LVWLLIGLLCIGAGKVRLHYHAYLTAASR 100 +++ L + F + L ++ L+ I + + A + + Sbjct: 61 IPAGIVVTLLLTLDFGISLLSTDWITLIVSVVIGALLLKTTIAIKGLERYAMAVVESLEM 120 Query: 101 NDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPV 160 N+ + + + L++ PLF+ + G G Sbjct: 121 NNLDSARENLS-MIVKRNTSNLDKNHVISGVLESVSENTVDGI-TGPLFYYAIFGLPGAF 178 Query: 161 TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGE 215 + + L VL+++P RL G+V + + + Sbjct: 179 VYRIINTADSMIGYKTDI---FKNLGWFAATCDTVLNYIPSRLTGLVMIISAAILQNNWK 235 Query: 216 KALPAWFASLGDFHTSQYQVLTRLAQFSLAREPH------------VDKVETPKAAVSMA 263 ++ + +L + E +A+S+ Sbjct: 236 ESYKIMIRDGKKTESPNAGYPMAALAGALGTKFEKVNHYELGSGELTLTKEHVHSAISIM 295 Query: 264 KKTSFVVVV-----VIALLTIYGA 282 K TS + ++ +LT+ G Sbjct: 296 KLTSILFFGLVIVPIVTVLTLIGW 319 >UniRef50_C0Z7H8 Cobalamin biosynthesis protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7H8_BREBN Length = 316 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 27/258 (10%), Positives = 62/258 (24%), Gaps = 20/258 (7%) Query: 5 TTLLVLIFERLFKLGEH-----WQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGV-----T 54 L+ + L W + + VK S + G+ + V Sbjct: 10 AYLIDRVVGDPRGLPHPVIIMGWWITRLEQVIRSLVKEESHLKLAGVLFPVVIVGGSYAV 69 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 L+ + V ++ + I + D A + Sbjct: 70 VWLILWGATFIHPVLAWILGAWLISTTIATKGLADAGMEIARHLVAGDMEAARRSLS-MV 128 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + + ++ I +PL + +GG + L + + Sbjct: 129 VGRDTEQLDEPEVCRGAVETVAENIVDAIV-SPLIFAAIGGAPLAMAYRAANTLDSMVGY 187 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG--HGEKALPAW---FASLGDFH 229 + L + VL+++P RL ++ W Sbjct: 188 ---KNEKYLNLGWASARIDDVLNYIPARLTALLLVTASWLQRLDGKQCWAMIRRDAHLHP 244 Query: 230 TSQYQVLTRLAQFSLARE 247 + + +L + Sbjct: 245 SPNSGLPEAGVAGALGVQ 262 >UniRef50_Q897L3 Cobalamin biosynthesis protein cobD n=13 Tax=Clostridium RepID=COBD_CLOTE Length = 317 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 29/265 (10%), Positives = 77/265 (29%), Gaps = 23/265 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRL------------EAFFRRVKHFSLGRTLGMTI 48 M L ++ ++ + + F+ K L + Sbjct: 1 MGLIDIIVAVLLDFAIGDPYWFPHPVIYIGKLISYLEEVGRKHFKSNKGLKTLGGLVVLT 60 Query: 49 IAMGVTFLLLRALQGVLFNVPTL-LVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 IA+ + L V + + +++ + A +++ A D Sbjct: 61 IAITSFGIPFLILWMVKDSFWIFHFLNIILIWTTLAAKSLKVEGKRVYYALKNEDIQEAR 120 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 + +E +++ + +APLF+ ++GG + G Sbjct: 121 EKLSY-IVGRDTRNLTEEEIIRADIETIMENTADG-VIAPLFYAMIGGAPFAMMYKGINT 178 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWF 222 + + ++ + L V V +++P R++GV+ L G+ ++ Sbjct: 179 MDSMLGYM---NDKYIHLGFFPAKVDDVFNFIPARISGVLICLSAPIVKGNIIRSFKVML 235 Query: 223 ASLGDFHTSQYQVLTRLAQFSLARE 247 + + + + Sbjct: 236 RDRKNHKSPNCAYPEGAGAGVMGIQ 260 >UniRef50_A6TU69 Cobalamin biosynthesis protein CobD n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TU69_ALKMQ Length = 314 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 28/263 (10%), Positives = 74/263 (28%), Gaps = 21/263 (7%) Query: 1 MTLF-TTLLVLIFE--RLFKLGEHW---QLDHRLEAFFRRVKHFSLGRTLG--MTIIAMG 52 M L ++ LI + F + + + + G + I + Sbjct: 1 MILMSAFIIDLIIGDPQWFPHPVRLMGKLILFLEKQCLNKKNKKASQLIAGAFVAFIVIA 60 Query: 53 VTFLLLRALQGVLFNVPTLL---VWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 ++++L L + + + ++ V + + + + + A + Sbjct: 61 LSYILTSRLIYIGYRIHPIIGGSVSIFLAYTVLATKSLDVETRKVYQALKEGNLSLARRN 120 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLR 169 L + + ++ I+ AP+F+L +GG + L Sbjct: 121 LSYL-VSRQTDELEEIEIARGAVETIAENISDGIV-APMFYLFIGGVPLAMAYKAVNTLD 178 Query: 170 AWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFAS 224 + + + V V ++VP RLA + ++ ++ + Sbjct: 179 SMIGY---RNEKYEYFGKVAARVDDVANYVPARLAVMFISMAALPMGKDFKRGVQTALQD 235 Query: 225 LGDFHTSQYQVLTRLAQFSLARE 247 + L + Sbjct: 236 GNKHSSPNAGYPEAAMAGVLGIQ 258 >UniRef50_A9KED3 Beta-lactamase induction protein n=6 Tax=Coxiella burnetii RepID=A9KED3_COXBN Length = 258 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 95/294 (32%), Gaps = 48/294 (16%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV-----KHFSLGRTLGMTIIAMGVTF 55 M L LL L+ +R + + + E +++ + + F G+ II + V F Sbjct: 1 MALTAVLLCLVIQRWLHFDSYTRQYNWFEPYYQWLKARFGQTFHWNGLGGVAIIILPVVF 60 Query: 56 LLLRALQGVLFNV---PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 + + + + + + + C+ + Sbjct: 61 IYILVALFICRTLTIVGYYFLTVAVLWYCMDVRSLAKS---------------------- 98 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + +L + A +FWL++ G+ G V LR + Sbjct: 99 ---------------QSGAVAQKVLIHVYERVFALIFWLLILGSTGVVLYTLVITLRQFL 143 Query: 173 YWLA-RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS 231 + L S + V VLDW+P+RL G+ +AL+GH W + Sbjct: 144 EKSPAQNNEEGTGLLSAVAIVQGVLDWLPLRLIGITFALVGHFSPTFALWRLKVLTGIDK 203 Query: 232 QYQVLTRLAQFSLAREPHVDKVETPKAAV--SMAKKTSFVVVVVIALLTIYGAL 283 + +L + + + + +V +VVIAL TI + Sbjct: 204 TPDLAAACGLTALDMNKETKLLSLEELKSLDGLISRALWVWLVVIALFTIGRWI 257 >UniRef50_B3PLN3 Putative AmpE n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PLN3_CELJU Length = 329 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 45/337 (13%), Positives = 96/337 (28%), Gaps = 66/337 (19%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 M + ++VL Q D R+ ++ + + + + L+ Sbjct: 1 MIFLSLVVVLAILHWLGRAGFIQYDGWFRLLVNRLHKIPGIASVPVLALVLALLIPLVLL 60 Query: 61 LQGVLFNV------PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 L + +++ + L +G G + AY+ ++ D+ A + L Sbjct: 61 LVIFVLLYHNLGRTSLFFLYVPVLLYSLGRGNLVEDVKAYIELVNKGDNVAASLWVENLR 120 Query: 115 M--------IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYA 166 + D R + + + F A +FW ++ G +G + Sbjct: 121 GNKKPVGKDLDCDIEINDWRSLHTQALKTIAYRGFERTFAVIFWFVIVGPFGALLYRLSV 180 Query: 167 FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLG 226 R L +L+ VRL GV +A +G+ E +L Sbjct: 181 LYRELA-------EEGSADAQVAAKWLWLLELPAVRLMGVTWAFVGNFET--SPLRRNLL 231 Query: 227 DFHTSQYQVLTRLAQFSLAREPHVDKV--------------------------------- 253 D ++ VL + +L + Sbjct: 232 DIESASSSVLNECLRGALGAQTEHSNAAMAAMNPEQQAEYQEELEEETQDIIEDLTGDLV 291 Query: 254 ----------ETPKAAVSMAKKTSFVVVVVIALLTIY 280 K+++ + ++ V IA T++ Sbjct: 292 TTHNEPGYSFALIKSSLPLYNRSLLFWVCAIAFATLF 328 >UniRef50_B8I0R7 Cobalamin biosynthesis protein CobD n=4 Tax=Clostridiales RepID=B8I0R7_CLOCE Length = 320 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 68/261 (26%), Gaps = 23/261 (8%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV------KHFSLGRTLGMTIIAMG----- 52 +L LIF L +L + ++ K G + + Sbjct: 9 IGFILDLIFGDPPWLPHPIRLIGWFVSKGEKLLRQAFPKTQKGEFVAGAVLAILITAGTF 68 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 V LLL G + + V L + ++ +D Sbjct: 69 VIPLLLLYFLGKVSIYIEVAVASLFCYQILATKSLKTESMRVYYHLKDHDMANARKYLS- 127 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + +E ++ + +APL +L++GG Y + Sbjct: 128 WIVGRDTQNLTEEGIARAAVETVAENTSDG-VIAPLIFLVLGGAP---LGFLYKAVNTMD 183 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG------EKALPAWFASLG 226 + + VL+++P L+ + + AL + Sbjct: 184 SMIGYKNDKYLYFGKFAARFDDVLNFIPAVLSAY-MIIAASFVCGLDYKNALRIYKRDKR 242 Query: 227 DFHTSQYQVLTRLAQFSLARE 247 + + + +L + Sbjct: 243 NHSSPNSAKTEAVCAGALNVQ 263 >UniRef50_Q3ZX56 Cobalamin biosynthesis protein cobD n=5 Tax=Dehalococcoides RepID=COBD_DEHSC Length = 308 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 37/313 (11%), Positives = 91/313 (29%), Gaps = 37/313 (11%) Query: 2 TLFTTLLVLIFERLFKLG-EHWQLDHRLEAFFRRVKHFSLGRTLG------------MTI 48 L LL L+ + +F + + + G Sbjct: 3 ILLIFLLALVIDMVFGDPPNAFHPVAYMGKVISLFERAGFKGGKGYQFVYGIVMVIFTMA 62 Query: 49 IAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARAT 108 + + LL LQG+ ++ ++V ++ +C +R ++D Sbjct: 63 LFFVPVYFLLDWLQGIN-SIVYIIVSAILFKMCFTVTGLRKAALLIKRLLEKDDIAQARF 121 Query: 109 MAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFL 168 L + + +++ I ++APLF+ ++ G G + + Sbjct: 122 ELRSL-VSRDTSKLPQPKLVAAAVESVAESIGDG-FVAPLFFFLIFGVPGVMAYRVVSTF 179 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALP--AWFASLG 226 + + + L VL+++P RL+ + + + P AW Sbjct: 180 DSMVGYRG----KYEYLGKFAARFDDVLNFIPARLSALCILVASFFGRYSPAGAWRIMWR 235 Query: 227 DF---HTSQYQVLTRLAQFSLAR------------EPHVDKVETPKAAVSMAKKTSFVVV 271 D + A +L + +T ++ + + V Sbjct: 236 DHGKTQSPNAGWPMATAAGALEVCLEKVGHYSLGDDIRPLLPQTISCSLVLINNAGCIWV 295 Query: 272 VVIALLTIYGALV 284 ++ + + + Sbjct: 296 LISVGVIYFARIA 308 >UniRef50_Q2NDZ9 CobD n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NDZ9_METST Length = 319 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 34/306 (11%), Positives = 84/306 (27%), Gaps = 34/306 (11%) Query: 2 TLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRAL 61 L+ +I + + R+K++ +I + F+++ Sbjct: 13 IFLAILIDMILGEV---PTKIHPVVYMGNIISRLKNYLPNTRFSGLLIVLTTNFIVVVVT 69 Query: 62 QGVLFN------VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 L L+ LI + + D + L + Sbjct: 70 LLFLIILMLINQWLYLIFAALILSTTFSINFLIKSVQDIQNDLNE-DINKARKSMSYL-V 127 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGG-TWGP----VTLMGYAFLRA 170 + R ++ I ++PLF+ + G +G + M Y Sbjct: 128 SRDTTQLTESRITSAAIETLSENITDSI-ISPLFYTALLGLPFGIFFSILFAMIYRASNT 186 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAG-----VVYALIGHGEKALPAWFASL 225 L + + +L+++P R+ G + L +++ Sbjct: 187 MDAMLGYKTKELIDVGYYPAKLDDLLNYIPARITGYYVIFAAFILKYDYKQSYDVMKKYA 246 Query: 226 GDFHTSQYQVLTRLAQFSLAREPHVDKVET------------PKAAVSMAKKTSFVVVVV 273 + +L + + V A+++ K TS + ++ Sbjct: 247 LKTPSPNSGYSMAATAGALNIKLTKENVYELGYGTDKLTKDKITQAINITKVTSILFIIT 306 Query: 274 IALLTI 279 I ++ + Sbjct: 307 ILVIYL 312 >UniRef50_D1BMI1 Cobalamin biosynthesis protein CobD n=4 Tax=Veillonellaceae RepID=D1BMI1_VEIPT Length = 330 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 31/256 (12%), Positives = 65/256 (25%), Gaps = 20/256 (7%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV----------KHFSLGRTLGMTIIAMGV 53 LL LI + R+ +FF V K + G +G+ +I++ + Sbjct: 21 LAFLLDLIIGDPNSKYHPVAIIGRIISFFEAVLYKDTDNDTKKLWYGGIAVGLILISVYI 80 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 LL L GV+ ++I + I + + + Sbjct: 81 IVSLLLWLGGVVDEWVYYAFEVVILYIAISPRSLAGAGFTISQLIKQGNIVEARKRLS-W 139 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + + ++ GP+ + Y Sbjct: 140 IVGRDTEDLDESEITRATVETIAENTVDGIIAPF----FFFIIGGPMGAILYRTANTMDS 195 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG-----EKALPAWFASLGDF 228 L + +L+W+P R+ V+ + +KA+ Sbjct: 196 MLGYKNQKYLYFGRVAARFDDILNWIPARITFVLIVISAFFLRFDAKKAIQIGLRDAKKH 255 Query: 229 HTSQYQVLTRLAQFSL 244 + +L Sbjct: 256 PSPNGGYAEAPVAGAL 271 >UniRef50_UPI00016C0C98 cobalamin biosynthesis protein CobD n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C98 Length = 306 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 23/263 (8%), Positives = 66/263 (25%), Gaps = 22/263 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQ-----LDHRLEAFFRRVKHF------SLGRTLGMTII 49 M L+ + LF + + + + ++ + + + Sbjct: 1 MNF-VILIAFGLDALFGDPAYIPHPVSMIGKLITKTEKYLRERIPDEVRAGAYLVAIVCS 59 Query: 50 AMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 L++ A+ L V + + A ++ A S + Sbjct: 60 ISFFVPLIILAVLHAFNPWVALAVDIFFCFQILAAKSLKTAALRVFDAVSCGKPNEARKA 119 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLR 169 + + ++ +APLF++ +GG + Sbjct: 120 LSH-IVGRDTKNLDRDGVIKATIETVSENTTDG-VVAPLFYMAIGGAPLAFMYKAINTMD 177 Query: 170 AWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG-----EKALPAWFAS 224 + + + V + +++P R+A ++ + A + Sbjct: 178 SMIGY---KNDKYLLFGKCAAKVDDLANFLPARIAALLMIAASAFLSLDPKNAFKIYIRD 234 Query: 225 LGDFHTSQYQVLTRLAQFSLARE 247 + +L + Sbjct: 235 HKKHASPNSAHTEAACAGALGIQ 257 >UniRef50_C5D3K3 Cobalamin biosynthesis protein CobD n=3 Tax=Bacillaceae RepID=C5D3K3_GEOSW Length = 323 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 63/242 (26%), Gaps = 14/242 (5%) Query: 14 RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNV-PTLL 72 R + + F +R+ R G+ +A + A V + + + Sbjct: 21 RWLPHPVR-GIGSFISFFDKRLNQGRYRRMKGIITVAAVAGMVYCLASLVVYISYSLSWI 79 Query: 73 VWL----LIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREY 128 + ++ I ++ L + + + + Sbjct: 80 FGVMMEAVLIFTTIATKSLQEAAWNVLIPLEQGKIEKARRELS-MIVGRDTENLDEPEIV 138 Query: 129 LRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSG 188 ++ + APLF+ +GG + + L + Sbjct: 139 RACVETVAENTSDGI-TAPLFYAFIGGAPLALFYRAVNTCDSM---LGYKNEAYREFGWA 194 Query: 189 IDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWF---ASLGDFHTSQYQVLTRLAQFSLA 245 + V+++VP RL +V + G++ + L L Sbjct: 195 SARLDDVVNYVPARLTAMVMIFVHSGKRLRYCLRVLFRDARKHPSPNSGWLESAMAALLG 254 Query: 246 RE 247 + Sbjct: 255 VQ 256 >UniRef50_C4V0Y6 Cobalamin biosynthesis protein CbiB n=2 Tax=Selenomonas RepID=C4V0Y6_9FIRM Length = 319 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 32/299 (10%), Positives = 78/299 (26%), Gaps = 37/299 (12%) Query: 14 RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFN------ 67 RL + + L+ + T++ + V + A +G++ Sbjct: 25 RLHPVAFLGRFIGWLDRHLYPSYGGDGRKFAMGTLLVLIVLSISYAAAEGLILAARHLPV 84 Query: 68 -VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDER 126 ++ +++ CI + H ++ G + +E Sbjct: 85 AWGADVLEIILLYFCISPRSLAKAGHEIYALLDGDNLVGARVRVGY-IVGRDTAELDEED 143 Query: 127 EYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQ 186 ++ ++PLF+ ++GG V L + Sbjct: 144 AARAAIETVAENTVDG-VISPLFFFLLGGAPLAVLYRAANT---MDSMLGYKNDRYLYFG 199 Query: 187 SGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFHTSQYQVLTRLAQ 241 V VL++VP R+ +++ + AL + Sbjct: 200 RMAARVDDVLNYVPARITSILFVMAAFLLRYDARNALFILRRDAAGHPSPNGGYAEAPVA 259 Query: 242 FSL--------------------AREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIY 280 +L + AV + + + ++ L ++Y Sbjct: 260 GALHIRLGGINYYFGQKHFRAYMGDAHMDIAPKHILGAVRLMYTATVLFLLFAYLFSLY 318 >UniRef50_A0LJ23 Adenosylcobinamide-phosphate synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ23_SYNFM Length = 322 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 68/248 (27%), Gaps = 20/248 (8%) Query: 14 RLFKLGEHWQLDHRLEA----FFRRVKHFSLGRTLGMTIIAMGVTFL--LLRALQGVLFN 67 + W + ++ F L R G+ A+ VT + VL + Sbjct: 22 QWLPHPVRW-IGRLIQRAEAIFHDAEASPLLQRLAGICFWALVVTLVGTATMLFVSVLTH 80 Query: 68 VPTLLVWLLIG---LLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCD 124 +P L + + + A ND G L + + Sbjct: 81 LPPYLEHAGVVWLAYTTLATRSLHKESSHVARALRDNDIPLARECLGRL-VSRDTAHLEE 139 Query: 125 EREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHR 184 ++ ++ APLF+L VGG G + + + + ++ Sbjct: 140 RDIVRALVETVSESVSDGIV-APLFYLAVGGPLGGMIYKAVSTMDSMVGYMNDRYRYFGW 198 Query: 185 LQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFHTSQYQVLTRL 239 V +W+P RL+GV+ A + Sbjct: 199 F---AARADDVANWIPARLSGVLLVGAAASLGLDWRGAWRIMRRDARKMKSPNAGFPEAA 255 Query: 240 AQFSLARE 247 A ++ + Sbjct: 256 AAGAMGVQ 263 >UniRef50_C7PI39 Cobalamin biosynthesis protein CobD n=6 Tax=Bacteroidetes/Chlorobi group RepID=C7PI39_CHIPD Length = 317 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 66/243 (27%), Gaps = 12/243 (4%) Query: 7 LLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLF 66 LL L L +L L +F + + GR L I+++ + + G+ F Sbjct: 17 LLDLALGDPRWLPHPIRLFGHLISFGTKTLNRGKGRFLKGMILSVLLCAICWLFFAGMQF 76 Query: 67 -------NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGV 119 L + + + A S A + Sbjct: 77 WLLRIQTPAFYYLFTSIFVFFALANKSLLQEGREVFDALSSQGLDAGRKRLS-WIVGRET 135 Query: 120 PAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQ 179 + + + ++ +APLF+ VGG +T L + + Sbjct: 136 KNLGENQIRTAVFETLSENLSDG-VIAPLFYYAVGGLPAMMTYKMINTLDSMIGYKKEEY 194 Query: 180 TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRL 239 + V +++P R+ ++ L+ + L F + Sbjct: 195 F---WFGKFAARLDDVANFIPARITALLMVLVAFSRRGLTYIFRYGHQHASPNSGYPEAA 251 Query: 240 AQF 242 Sbjct: 252 LAG 254 >UniRef50_B0TIK7 Cobalamin biosynthesis protein cbib/cobd n=4 Tax=Bacteria RepID=B0TIK7_HELMI Length = 346 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 19/216 (8%), Positives = 51/216 (23%), Gaps = 14/216 (6%) Query: 41 GRTLGMTIIAMGVTFLLLRAL----QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLT 96 T + + M L + + L + + + Sbjct: 78 ASTFSVAALVMLALHLAGFSTAVDNVLTWPALLGKLAAATLLGIAFAGRCLAEAALEIKG 137 Query: 97 AASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGT 156 + D + + ++ +PLF+ ++ G Sbjct: 138 LLEQGDLVEARRKLS-WIVGRDTVNLGESEIVRATVETVAENTVDGI-TSPLFYALLLGI 195 Query: 157 WGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGH--- 213 G L + + + + +++P RL G+ L Sbjct: 196 PGAYAYKAINTLDSMIGY---RNERYLWFGRFAARLDDAANYIPARLTGLSMVLAATMMG 252 Query: 214 --GEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 ++ + AW + + + +L + Sbjct: 253 FPFKRMIAAWREDARRHPSPNSGIPESIMAGALGVQ 288 >UniRef50_A6X053 Cobalamin biosynthesis protein cobD n=46 Tax=Rhizobiales RepID=COBD_OCHA4 Length = 327 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 58/227 (25%), Gaps = 12/227 (5%) Query: 15 LFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVW 74 LF W G L + ++ V L+ L + Sbjct: 34 LFGKAISWGEKRWNNRNLSASVLRRNGMWLTIGLVMACVVLGLVLELSLPFAGTAGAVAE 93 Query: 75 LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQN 134 +LI + + + H A A A + + + +++ Sbjct: 94 ILIVTVLLAQKSLADHVQAVALALREEGIEGGRR-AVSMIVGRNPEHLDEGGVSRAAIES 152 Query: 135 ALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLH 194 + AP FW +VGG G + + + + Sbjct: 153 LAENASDGIV-APAFWFLVGGLPGLFAYKLINTADSM---IGHLNDRYRDFGRFAAKLDD 208 Query: 195 VLDWVPVRLAGVVYALIGHGEK-------ALPAWFASLGDFHTSQYQ 234 V +++P RL G++ +L K A + Sbjct: 209 VANYIPARLTGLLASLATAITKDRLSGKEAFSVMRRDARLHRSPNAG 255 >UniRef50_Q9KCI3 Cobalamin biosynthesis protein cobD n=4 Tax=Bacillaceae RepID=COBD_BACHD Length = 319 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 66/247 (26%), Gaps = 21/247 (8%) Query: 4 FTTLLVLIFERLFKLGEHWQL-----DHRLEAFFRRVKHFSLGRTLGMTIIAMG-----V 53 + I ++ + + F RR R G+ ++ Sbjct: 7 IAIVSAFILDKWLGDPKWLPHPVVGMGKLITYFERRWNCGRWRREKGVLLLLTVLLIVTA 66 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L L L + + ++V L+ I A ++ + + Sbjct: 67 LSLALVWLSYQVHLLLGVIVEALLIASTIAAKGLKEAAEEVARPLATRNLLEARRKLSY- 125 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + ++ ++ + APLF+ ++GG + + Sbjct: 126 IVGRDTDQLDEKEIARGAIETVAENTSDG-VTAPLFYALIGGAPLALLYRATNTCDSMVG 184 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI------GHGEKALPAWFASLGD 227 + + VL+WVP R+ GV+ L+ ++L Sbjct: 185 Y---KNERYRDFGWASAKFDDVLNWVPSRITGVLMLLLHRKRRQAPLGQSLKMLAREAKK 241 Query: 228 FHTSQYQ 234 + Sbjct: 242 HPSPNSG 248 >UniRef50_C9LWB5 Cobalamin biosynthesis protein CobD n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LWB5_9FIRM Length = 321 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 66/245 (26%), Gaps = 17/245 (6%) Query: 14 RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFL-------LLRALQGVLF 66 R + L LE F R + + + L ++A+ V + +LR L + Sbjct: 20 RFHPVVLMGNLIAWLEHCFYRPEDTNEKKLLCGGMLALIVLVVCYEAAWCILRLLGLIPL 79 Query: 67 NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDER 126 + + L+ I + D G + Sbjct: 80 PHVGMALEALLLAFMISPKSLAAAGMEIRALLKAGDLPEARRKVG-WIVGRDTEKLSVPE 138 Query: 127 EYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQ 186 ++ LAPLF+ ++GG V L + Sbjct: 139 VSRAAIETVAENTVDG-VLAPLFFYLIGGLPLAVLYRAANT---MDSMLGYKNAKYLYFG 194 Query: 187 SGIDAVLHVLDWVPVRLAGVVYALIGHGE--KALPAWF---ASLGDFHTSQYQVLTRLAQ 241 + VL+++P R+AGV++ L AW + Sbjct: 195 RVAARLDDVLNYIPARIAGVLFVLAAFFLGFDGRGAWRMLHRDAAKHPSPNGGHAEAPTA 254 Query: 242 FSLAR 246 +L Sbjct: 255 GALGI 259 >UniRef50_A7HMT4 Cobalamin biosynthesis protein CobD n=4 Tax=Thermotogaceae RepID=A7HMT4_FERNB Length = 294 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 58/232 (25%), Gaps = 23/232 (9%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ 62 L ++ L F + + + R+ +G+ L++ + Sbjct: 11 LLALIIDLFFGEF---PSVIHPVVYMGRVGKFFDNIYKSRSSKAVSFVLGMISLIVELII 67 Query: 63 GVLFNVP----------TLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 ++ + I + H ND Sbjct: 68 WGGLGYFLQSFSKRFTIAMIFEVCILKSTFSIRSLYEHVKR----CYTNDVELLRKNVS- 122 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + + Y +++ I+ PLF+ ++ G G V A Sbjct: 123 MIVSRDTSKLDKSHLYSAAVESLAENISDSI-TGPLFYYVLFGLPGAVVYRVVNTYDALF 181 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFAS 224 + + +L+ VP RL + + + +++ Sbjct: 182 GY---RNARYEWFGKFPARFDDLLNLVPSRLTALFISFF-NFKRSWEYIKKY 229 >UniRef50_C6L9T1 Cobalamin biosynthesis protein CobD n=5 Tax=Clostridia RepID=C6L9T1_9FIRM Length = 349 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 13/219 (5%) Query: 36 KHFSLGRTLGMTIIAMGV-TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAY 94 + F+ G L + ++ + LLL ++ L++ L+ + +R Sbjct: 80 REFAAGTLLAVCVVLISAGVPLLLLLAAQMVHPYLRLVIESLLCWQLLATKSLRDESMKV 139 Query: 95 LTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG 154 +ND A + + ++ + +AP+F++ +G Sbjct: 140 YRVLQKNDIKGARK-AVSMIVGRDTENLDAAGVTKAAVETVAENTSDG-VIAPMFYMAIG 197 Query: 155 GTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG 214 G V Y + L + + V++++P RL+ + + + Sbjct: 198 ---GAVLGFFYKAINTMDSMLGYKNDRYLYFGRFAAKLDDVVNFLPARLSAL-FMIAASF 253 Query: 215 ------EKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 + A + + + +L + Sbjct: 254 LLRMDAKNAWRIFRRDRLRHASPNSAQTEAVMAGALDVQ 292 >UniRef50_Q3A7A1 Adenosylcobinamide-phosphate synthase n=2 Tax=Desulfuromonadales RepID=Q3A7A1_PELCD Length = 314 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 69/264 (26%), Gaps = 22/264 (8%) Query: 1 MTL-FTTLLVLIFERLFKLGEHWQLD---------HRLEAFFRRVKHFSLGRTLGMTIIA 50 MTL L + + L+ RR+ + L + I+ Sbjct: 1 MTLEMQILAAIGLDLLWGDPRRLPHPVKGMGQLAMALEAPLRRRIANPRLAGIVTAMIVV 60 Query: 51 MGVTFL--LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARAT 108 + LL + L + +L+ CI A + H L A + Sbjct: 61 TATAAISALLLSAAYRLHPWAGDALSILLLSTCIAARDLAAHAWQVLKALRLGNLELARQ 120 Query: 109 MAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFL 168 G + +++ APLFW ++ G G + + L Sbjct: 121 RVG-WLVGRDTAPLDRSGVVRAAVESVAENTVDG-VTAPLFWAVLLGPIGAMAYKAASTL 178 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLA-----GVVYALIGHGEKALPAWFA 223 + + + + VL+++P RL L + Sbjct: 179 DSTFGYKNERYLQYGW---ASARLDDVLNYLPARLTLPLTVAASALLGLRPQHTWRIALR 235 Query: 224 SLGDFHTSQYQVLTRLAQFSLARE 247 + + +L + Sbjct: 236 DWRNHPSPNSGWSEAATAGALGIQ 259 >UniRef50_C7N893 Cobalamin biosynthesis protein CobD n=4 Tax=Bacteria RepID=C7N893_SLAHD Length = 323 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 26/258 (10%), Positives = 70/258 (27%), Gaps = 21/258 (8%) Query: 6 TLLVLIFERLFKLGEHWQ-----LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 + L+F + L + + R G + + V + Sbjct: 12 FVADLLFGDPYSLPHPVRWIGRLIAALENPLRRAFPKTDKGEFWAGVCLTVLVAGISTAC 71 Query: 61 LQGVLF------NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 G+++ V L+ + +++ A A + Sbjct: 72 AAGLIWACGLISGWLAFGVECLVCYQMLACKSLKVESMKVYDALVGGSLEDAR-HAVSMI 130 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + + ++ + +APL ++ + G G V + + + Sbjct: 131 VGRDTRNLDAQGITKATVETIAENASDG-VVAPLLYMALFGPVGAVAYKSVNTMDSMVGY 189 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVY----ALIG-HGEKALPAWFASLGDFH 229 + + + + VL+++P R+ G + L+G + A + Sbjct: 190 V---NDRYRHFGTAAAKLDDVLNFLPARIGGALMCAAAGLVGQDPKGAWRMFRRDRLKHP 246 Query: 230 TSQYQVLTRLAQFSLARE 247 + +L + Sbjct: 247 SPNSAHTEAACAGALGIQ 264 >UniRef50_B8FH76 Cobalamin biosynthesis protein CobD n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH76_DESAA Length = 319 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 30/268 (11%), Positives = 74/268 (27%), Gaps = 17/268 (6%) Query: 4 FTTLLVLIFERLFKLGEHWQL-DHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ 62 +L +I + +L +E + R + + + + + L+ + Sbjct: 15 IAFILDMILGDPQGMPHPIRLMGRLIEGWEPRFRRLPIPTVWAGALFTLCLVALVWISAW 74 Query: 63 GVL------FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 VL + ++I I + +A + D+ + + Sbjct: 75 IVLAAGAAMHPWLGAGLEIIILYFSIAPRCLDKAAYAVEKPLRQGDAEKARAELS-MIVG 133 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 + ++ L+PLFW+ VGG + + L + + Sbjct: 134 RETKDLTPTQMSRAAVETVAENFVDG-VLSPLFWIAVGGAPAAMAFKMASTLDSMVGY-- 190 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG-----EKALPAWFASLGDFHTS 231 + + V +++P RL+ + AL + A + + Sbjct: 191 -KNEQYILFGKASARLDDVANFIPARLSIPIIALAARLLGLSHKAAFKTAVLEGKNHKSP 249 Query: 232 QYQVLTRLAQFSLAREPHVDKVETPKAA 259 +L + V + Sbjct: 250 NAGYPEAAFAGALEIRLNGPAVYHGELL 277 >UniRef50_C3MJX6 Cobalamin biosynthesis protein CobD n=12 Tax=Sulfolobaceae RepID=C3MJX6_SULIL Length = 305 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 98/293 (33%), Gaps = 23/293 (7%) Query: 3 LFTTLLVLIFER-LFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRAL 61 LF L LI++ + + + + G + G+ + M V L + Sbjct: 2 LFVLALALIWDLTISEPPIYIHPVVWTGKISEALIKPYKGYSYGVLLWIMSVLPPLFIFV 61 Query: 62 QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPA 121 + + + L+I + + + SR D A ++ + Sbjct: 62 YLPVEAPIPIYLNLIILAFSLKTTFSIKMLYDIVKKGSRLDEQ-ARYYAQQIV--RRDLS 118 Query: 122 GCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTP 181 D+ L +L +P+FW ++ G +G + + + + Sbjct: 119 KSDKGHIASALIESLFESTVDGIASPIFWFLIFGIFGAMLQRLANTMDSMVGYKTPELRK 178 Query: 182 HHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFHTSQYQVL 236 + +L+++P RL G++ G + ++ + + ++Y + Sbjct: 179 EGWF---SAKIDTILNYIPARLTGMIMLTSGFILGLNVKQGWKTLREAKMESINAKYPIA 235 Query: 237 TRLAQFSLARE---------PHVDKVETPKAAVSMAKKTSFVVVVVIALLTIY 280 +++ E ++ + K A+ + K + + ++I LTIY Sbjct: 236 IAAGLLNVSLEKVGHYRIGNGNLPDEKDVKNALKLFKLSLILYFLLI--LTIY 286 >UniRef50_Q939K6 CbiB n=6 Tax=Actinomycetales RepID=Q939K6_PROFR Length = 548 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 63/254 (24%), Gaps = 17/254 (6%) Query: 6 TLLVLIFERLFKLG-EHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGV 64 + + +RL W + ++ ++G + V L + L Sbjct: 222 LISAVTADRLIPDPANPWHPVAWFGTWAGWLEKKMWRDSVGQGAAYLVVALLPVATLGVA 281 Query: 65 L------FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHG 118 + + G L IG+ + +D A L Sbjct: 282 VEAATRRHPLAHATATAAAGWLVIGSQSLATEGEQMADELEGDDLSAARDRLPHLCGRIP 341 Query: 119 VPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARY 178 E +++ A L+W V G G + L A + Sbjct: 342 DTMPEQE-LARGTIESLAENTADSGV-ASLWWGSVAGIPGMLIHRASNTLDAMV---GHH 396 Query: 179 QTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASLGDFHTSQY 233 + LDW+P RL G++ A+ G + + Sbjct: 397 NEHFEHFGKCAARLDDGLDWIPERLTGILGAICAPSVGGRVVTTARIVARDARNHPSPNG 456 Query: 234 QVLTRLAQFSLARE 247 +L + Sbjct: 457 GWCESAWAGALGVQ 470 >UniRef50_A8PLW8 Transmembrane protein n=1 Tax=Rickettsiella grylli RepID=A8PLW8_9COXI Length = 247 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 85/289 (29%), Gaps = 56/289 (19%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL---------GMTIIAM 51 MT T LL L ER G + E + ++ + + + + Sbjct: 1 MTFITLLLCLGLERFLHRGNFLARFNWFEQYASKIDDLTKNYAWTQHYFIPLLLVVLPIV 60 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 ++ + + L+ + C+G + Sbjct: 61 VPIAVIYSLSAAFIQGLLAFLIGAAVLFYCLGPINLFDS--------------------- 99 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 +E+ + W A +FW+ + G + Sbjct: 100 ------------------KEIHQRIFWQANESLFAVIFWMALLGPIAALIYRLV------ 135 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS 231 A + L V +LDW+P+R+ +++AL G K L + Sbjct: 136 -ERSAHIHASYPALGKSAQQVRALLDWLPIRVFSMLFALAGDFVKTSQYCLDYLFREVSF 194 Query: 232 QYQVLTRLAQFSLAREPHVDKVETP-KAAVSMAKKTSFVVVVVIALLTI 279 +++ + + +L + A+ + ++ + ++++ +T+ Sbjct: 195 NRELIEKSGRIALGLTETAELTNENYSTALKLIDRSLILFLIIVFAVTL 243 >UniRef50_C1DPK8 Inner membrane protein n=51 Tax=Proteobacteria RepID=C1DPK8_AZOVD Length = 280 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 99/291 (34%), Gaps = 23/291 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFS------LGRTLGMTIIAMGVT 54 MT LL L+ ER + H Q D RV+ + +++ V Sbjct: 1 MTFLVLLLALLVERFSRWRLHIQQDIFWLRLLDRVETNPDLAGDPRRALFRLVLLSALVL 60 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 +LL L L+ L + + + + +G G + + A R DS A A Sbjct: 61 GVLLALLSLPLYGWLALPLHVFVLVYSLGRGDILTELKPFREAWRRGDSEAACLAAER-- 118 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + LR +Q LLW ++ + A +FW + G + A Sbjct: 119 --DLAVGAEESLSLLRRVQGYLLWQAYQSFFAVIFWYALLGPVAVLAYRLTALTGEHTSL 176 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 L+ + H+LDW+P R + +AL+G+ L D + Sbjct: 177 --------PALREHSVRLRHLLDWLPARGLALSFALVGNFGAVFRVLLRYLSDREVPAAK 228 Query: 235 VLTRLAQFS-LAREPH----VDKVETPKAAVSMAKKTSFVVVVVIALLTIY 280 V+ + + E + T + + + VV+AL ++ Sbjct: 229 VVIEAGRAANEGLEAEVLAGEAGLMTLDELWQLLVRAGMLWYVVMALAILF 279 >UniRef50_A3CL57 Cobalamin biosynthesis protein cobD n=1 Tax=Streptococcus sanguinis SK36 RepID=COBD_STRSV Length = 316 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 70/263 (26%), Gaps = 21/263 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHW-QLDHRLEAFFRRVKHFS-----LGRTLGMTIIAMGVT 54 MTL L ++ + L W + ++ G + V Sbjct: 1 MTLIAIFLAVLLDWLIGDPYSWPHPVKWMGSYIYLCMRLQEKKQFSPYLFGFFLWLTTVG 60 Query: 55 FLL-----LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 L L L G+ V LVW+ + + A + Sbjct: 61 LALGVSCGLLWLAGLAHPVLYWLVWIYLAYASLAAKSLAFEAQKVYHTLKFGTLEEARKQ 120 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLR 169 G + + E ++ + + PL L +GG +T L Sbjct: 121 VG-MIVGRETSQLTPEEISKATIETVAENTSDG-VIGPLLCLFLGGPILAMTYKAINTLD 178 Query: 170 AWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVV-----YALIGHGEKALPAWFAS 224 + + + ++ + + + +P RL + L+ + AL + Sbjct: 179 SMVGYKTEK---YRKIGLISAKMDDLANLIPARLTWLFLILSSQILLLDVKGALRIGWRD 235 Query: 225 LGDFHTSQYQVLTRLAQFSLARE 247 + + +L + Sbjct: 236 RYQHASPNSAFSEAVVAGALGIQ 258 >UniRef50_C1SKG0 Cobalamin biosynthesis protein CobD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKG0_9BACT Length = 256 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 55/204 (26%), Gaps = 10/204 (4%) Query: 49 IAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARAT 108 + + ++ + +L +V LI I + H A S Sbjct: 2 AMVVLATCIILGIAKLLGGFIYFMVSSLIMYFSISIKSMTDHAEAVFRPLSDGHIETAGQ 61 Query: 109 MAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFL 168 + + E +++ ++P+F+ + G G VT + L Sbjct: 62 KLA-MIVSRDTDGMDSEMIVRSCIESVSENFTDG-VVSPIFYSVFFGGVGAVTFKAVSTL 119 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGH-----GEKALPAWFA 223 + + + +L+++P RL+ ++ ++ G K Sbjct: 120 DSMVGY---RNERYELFGRASAKADDLLNFIPARLSVLIISVAGFVKGVPFTKTFDVVKR 176 Query: 224 SLGDFHTSQYQVLTRLAQFSLARE 247 + L Sbjct: 177 FRLSHPSPNSAHSMSAFAGVLDVT 200 >UniRef50_Q8KDV4 Cobalamin biosynthesis protein cobD n=11 Tax=Chlorobiaceae RepID=COBD_CHLTE Length = 319 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 28/264 (10%), Positives = 67/264 (25%), Gaps = 22/264 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHW-QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLR 59 MT + + L + + + + G +A +T L++ Sbjct: 1 MTWLLMPAAFLLDLLLGDPQWFPHPVRLVGKLASGAERLFRGMRFLPLRLAGILTALVVI 60 Query: 60 ALQ-----------GVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARAT 108 +L + ++V +L+ I + H A A D Sbjct: 61 GTTVVTVLALVVAAFLLHPLAGVVVSVLLLYFAIAPRDLYNHGSAVRDALRAGDLELARQ 120 Query: 109 MAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFL 168 + + +E +++ + APLF+ ++ G G L Sbjct: 121 KVA-MMVGRDTSMLDEEGVARAAVESVAENTSDG-VTAPLFYGLLFGPAGAWLYKASNTL 178 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV-----VYALIGHGEKALPAWFA 223 + + + ++++P RL + + L + Sbjct: 179 DSMFGY---RNERYREFGWASARFDDFMNYLPSRLTVLAVAGAAFILRLDPAGVFRSVKL 235 Query: 224 SLGDFHTSQYQVLTRLAQFSLARE 247 + +L Sbjct: 236 GATLHESPNAGYPEAAFAGALGVT 259 >UniRef50_Q1Q2T8 Similar to cobalamin biosynthesis protein cbiB n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q2T8_9BACT Length = 328 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 30/260 (11%), Positives = 70/260 (26%), Gaps = 21/260 (8%) Query: 4 FTTLLVLIFE------RLFKLGEHW-----QLDHRLEAFFRRVKHFSLGRTLGMTIIAMG 52 F + I + + + + G + + Sbjct: 10 FQIIAAFILDITIGDPQWRFHPVRLIGKSIHCIEYIVRRLPLPERLMGLFLTGGIVSGVY 69 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 + + +L V ++ +I I + + ND +M Sbjct: 70 IITCEIMSLSKQWNPVCQVITGGIIVYFAISIKNLADEAKKVINMLRINDLKNARSMLSR 129 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + E+ ++ LAPLF+ +GG +T L + Sbjct: 130 -IVGRDTADLNREQIIRAAIETVAESCVDGI-LAPLFYCFIGGPVAVMTYRAVNTLDSMV 187 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVY----ALIGH-GEKALPAWFASLGD 227 + + +L + + +++P RL+ + L GH + +L F Sbjct: 188 GY---KNEKYIKLGWASARLDDMANYIPARLSALFIPVASFLCGHGFQSSLRTAFQEGRK 244 Query: 228 FHTSQYQVLTRLAQFSLARE 247 + + +L + Sbjct: 245 HESLNSGIPEAAFAGALGVQ 264 >UniRef50_Q97CS1 Probable cobalamin biosynthesis protein cobD n=2 Tax=Thermoplasma RepID=COBD_THEVO Length = 304 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 64/230 (27%), Gaps = 13/230 (5%) Query: 24 LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIG 83 ++ F R F G + +I + L V ++V ++I Sbjct: 35 IEGYFRKFDNR---FRAGILFSIAVIVLTAIPYFLAVYLSSFILVVYVVVSMVILKTTFS 91 Query: 84 AGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRF 143 + H + + + + + + +++ + Sbjct: 92 ITSMGEHIKLITDSLKKGNIMEARMHLS-MIVRRDTSRLNENEISSAAIESIAEGLVDG- 149 Query: 144 YLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRL 203 Y+ PLF+ + G G L + + R R + + V++++P R+ Sbjct: 150 YITPLFFFVFFGLPGAFIARIINTLDSMYGYKDRKNFEFGRFSAFM---DTVINYIPARI 206 Query: 204 AGVVYALIGHG----EKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPH 249 + KA+P + F + +L Sbjct: 207 SWFFITFSSDILNYRSKAIPV-RRYIRRFDSVNAGWPIASMASALNLRLE 255 >UniRef50_A9MLR0 Cobalamin biosynthesis protein cbiB n=55 Tax=Enterobacteriaceae RepID=CBIB_SALAR Length = 319 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 29/266 (10%), Positives = 71/266 (26%), Gaps = 24/266 (9%) Query: 1 MTLFTTLLVLIFERLFKLGEHW-QLDHRLEAFFRRVKHFSLGRTL--------GMTIIAM 51 MT+ + + + + +HW + V+H G + + Sbjct: 1 MTILAWCIAWVLDFIIGDPQHWPHPVRWIGRLITFVQHIVRRYCHSDKALRIGGGVMWIV 60 Query: 52 GV-----TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHAR 106 V + AL + V + + + + ND Sbjct: 61 VVGATWGMAWGVLALAQRIHPWLGWSVEVWMIFTVLAGRSLARAAQDVERPLRENDLAES 120 Query: 107 ATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYA 166 + E+ ++ +APLF+L +GG + Sbjct: 121 RIKLS-WIVGRDTSQLQPEQINRAVVETVAENTVDGI-IAPLFFLFLGGAPLAMAYKAVN 178 Query: 167 FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGE-----KALPAW 221 L + + + + + V +++P RL+ ++ + +AL Sbjct: 179 TLDSMVGY---KHEKYRAIGMVSARMDDVANYLPARLSWLLLGIAAGLCRLSGWRALRIG 235 Query: 222 FASLGDFHTSQYQVLTRLAQFSLARE 247 + + + +L + Sbjct: 236 WRDRYNHSSPNCAWSEACVAGALGIQ 261 >UniRef50_C4Z7P3 Adenosylcobinamide-phosphate synthase CobD n=8 Tax=Clostridiales RepID=C4Z7P3_EUBE2 Length = 345 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 18/276 (6%), Positives = 61/276 (22%), Gaps = 38/276 (13%) Query: 4 FTTLLVLIFERLFKLGEHW-QLDHRLEAFFRRVKHF--------SLGRTLGMTIIAMGVT 54 + + + + + ++ + G+ + + Sbjct: 15 IAIMCGYVLDLIIGDPHWLYHPVRLIGKMISWLESILLKEEYSQAKKYKRGIVLAVLTPL 74 Query: 55 F-----LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 + A+ + V +V ++ + ++ A Sbjct: 75 ITGIVTAGILAVCYYINIVLGCVVETIMCYQILAVKSLKTESMKVYYALKNEGIPQARQ- 133 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLR 169 A + + + ++ + +APLF+++ G G + Sbjct: 134 AVSMIVGRDTSQLDEHGITRAAVETVAENTSDG-VVAPLFYMMFFGAVGGFVYKAVNTMD 192 Query: 170 AWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG----------------- 212 + + + + V++++P R G + Sbjct: 193 SMIGY---KNDKYLHFGRFAAKMDDVVNFIPARAGGCLMVAAAGIAQLAEKCMGRNKDLS 249 Query: 213 --HGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 A + + +L Sbjct: 250 HYSMGNAWKIFLRDRMKHSSPNSAQTESACAGALKV 285 >UniRef50_D0L1E9 Signaling modulator of AmpD, AmpE n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E9_HALNC Length = 337 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 60/336 (17%), Positives = 107/336 (31%), Gaps = 53/336 (15%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEA----FFRRVKHFSLGRTLGMTIIAMGVTFL 56 M LF L+V++ ER + W D ++ +R+ + + + L Sbjct: 1 MKLFILLVVVVLERSWTALARWCADRGVQKRVLSLRQRLSAVLGESLALLVVWFVPPLIL 60 Query: 57 LLRALQGVLF----------NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHAR 106 + + + L+V + LL + G+ A A + D+ Sbjct: 61 AWFLAWFLAWIDADQGSLLGVLLYLVVSIATLLLLVAPGQAHKKAKALAQACQQEDAEHA 120 Query: 107 ATMAGELTMIHGVP---AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLM 163 A +L P A E ++L ++ + F + A LFW +V G G + Sbjct: 121 AQCRAQLWRDGADPIEQADSIEEASPQQLAERIITLGFNEWFAVLFWFVVLGPAGALFYR 180 Query: 164 G------------------YAFLRAWQYWLARYQTPHHRLQSGID----AVLHVLDWVPV 201 +PH + S ID +L +LDW Sbjct: 181 LTDWFAQPPPIINSAVNSGANTTANAGAINESLPSPHAQTGSFIDALPARLLALLDWPIA 240 Query: 202 RLAGVVYALIGHGEKALPAWF----ASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPK 257 RL + L G + L AW + ++ R+ SL E D E Sbjct: 241 RLYAFLLLLAGGFNRGLDAWLNGPIKNDLSLAEKNADLIGRVGNASLELEREDDCAEGAV 300 Query: 258 AAVSMAK----------KTSFVVVVVIALLTIYGAL 283 ++ + + + ++AL T+ G L Sbjct: 301 CLADQSRWYKNASAIVLRALMIGLGIVALFTLSGWL 336 >UniRef50_B5YL82 Cobalamin biosynthesis protein CobD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL82_THEYD Length = 325 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 28/264 (10%), Positives = 80/264 (30%), Gaps = 28/264 (10%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFS-----LGRTLGMTIIAMGVTFLLLRA 60 + + + L + + + + ++F GR G + + L + Sbjct: 11 IVSAFLIDFLIGDPKKYHPVKTIGKLIEKTENFLRKRKLNGRFGGFLLFLFVAVSVFLFS 70 Query: 61 LQGVLF-------NVPTLLVWLLIGLLC----IGAGKVRLHYHAYLTAASRNDSHARATM 109 + V F + T L ++ + I + + Sbjct: 71 VIFVYFLNKLSSLSEITWLFSCILLAVAGSLFIALRGLIEEAKRINRLLNEESLEQARIS 130 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLR 169 L + ++ + +++ ++ +APLF+ ++GG L+ Y + Sbjct: 131 LKAL-VGRDTDNLSADKIRIAIIESLAENLSDG-VIAPLFYFLIGGFP---FLLLYKTVN 185 Query: 170 AWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-------HGEKALPAWF 222 + + + + + +++P R+ G++ LI G++AL Sbjct: 186 TLDSMVGYKNEIYRKFGWFSAKMDDIFNYIPARITGLLIVLIAFIMLGFSSGKRALKIML 245 Query: 223 ASLGDFHTSQYQVLTRLAQFSLAR 246 + + + ++ Sbjct: 246 RDGKNHSSPNSGIPEAAMSGAVGV 269 >UniRef50_C9S015 Cobalamin biosynthesis protein CobD n=5 Tax=Bacillaceae RepID=C9S015_GEOSY Length = 324 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 57/241 (23%), Gaps = 12/241 (4%) Query: 14 RLFKLGEH---WQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFN-VP 69 R + + + K + G ++A L G + Sbjct: 21 RWLPHPVRGMGTLIAWLDRRWNQGTKRRAKGAAAVAVVLAAVYGVSALVVYVGYALSVYV 80 Query: 70 TLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYL 129 + + + I + D + + + Sbjct: 81 GVAIEAALIFTTIATKSLAEAAEDVRRPLEAGDLPEARRALS-MIVGRDTERLDEAGITR 139 Query: 130 RELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGI 189 ++ + APLF+ +GG + + L + Sbjct: 140 ACVETVAENTSDGI-TAPLFYAALGGAPLAMLYRAVNTCDSM---LGYKNETYREFGWAA 195 Query: 190 DAVLHVLDWVPVRLAGVVYALIGHGEK---ALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 + L+++P R+ +V L+ G + AL F + L Sbjct: 196 ARLDDALNYIPARMTALVMVLVCGGRRLRLALSILFRDARRHPSPNSGWPEAAMAGLLGV 255 Query: 247 E 247 + Sbjct: 256 Q 256 >UniRef50_B9KKH9 Adenosylcobinamide-phosphate synthase n=3 Tax=Rhodobacter sphaeroides RepID=B9KKH9_RHOSK Length = 325 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 59/230 (25%), Gaps = 11/230 (4%) Query: 23 QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLF-----NVPTLLVWLLI 77 + + A R S + A+ VT L +L + ++ L+ Sbjct: 47 WIGRIISALDERWNRGSEAERRRGGVAALLVTVLAAALPAALLQSLLPGGLLGAVLTGLL 106 Query: 78 GLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALL 137 + + H A D A + + L++ Sbjct: 107 AWPLVALRSMHEHVEAVAVPLDAGDLPGARR-AVSMIVGRDPSQLDGAGVTRAALESLAE 165 Query: 138 WINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLD 197 + APLFW ++ G G L + ++ Sbjct: 166 NSSDGIV-APLFWGVLLGLPGIAAYKAINTLDSMIGHRTPRHEAFGW---ASARTDDWVN 221 Query: 198 WVPVRLAGVVYALI-GHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 +P RL GV++A G +AL + +L Sbjct: 222 LIPARLTGVLFAFASGRPREALAVMRRDARAHRSPNAGWPEAAMAGALGV 271 >UniRef50_B8G243 Cobalamin biosynthesis protein CobD n=2 Tax=Desulfitobacterium hafniense RepID=B8G243_DESHD Length = 321 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 70/261 (26%), Gaps = 22/261 (8%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRL-----EAFFRRVKHFSLG-RTLGMTIIAMGVTFLL 57 L ++++ W + +R S R L ++ + + Sbjct: 8 LAFGLGFLWDQAVGDPPKWPHPVIYMGKAIAWYEQRFNQGSPQLRRLKGALLTLALVIGS 67 Query: 58 LRALQGVLFNV------PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 GV+ L++ +L+ + + + LT + G Sbjct: 68 YALTAGVIEGAQEISAALGLIIEVLLLGSTLAGKSLLEAGNLVLTPLREGNLDEARHKLG 127 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 + + ++ L+PLF++++GG + + L + Sbjct: 128 -WFVSRDTAQLPEGEIVRGTVETLAENFVDGI-LSPLFYMLIGGAPLAMAFKAVSTLDSM 185 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG-----EKALPAWFASLG 226 + + +++P RL+ + L G AL W Sbjct: 186 IGY---RNERYEDFGWFAARTDDWANYLPARLSVGILLLAGWFYKLPVGHALTIWRRDAK 242 Query: 227 DFHTSQYQVLTRLAQFSLARE 247 + + L + Sbjct: 243 THPSPNGGNPESVVAGLLEIQ 263 >UniRef50_Q1GDE9 Cobalamin biosynthesis protein cobD n=19 Tax=Rhodobacterales RepID=COBD_SILST Length = 303 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 78/256 (30%), Gaps = 19/256 (7%) Query: 1 MTLFTTLL-VLIFERLFKLGEHWQ---------LDHRLEAFFRRVKHFSLGRTLGMTIIA 50 M+ L+ +I + F + + ++A R+ + G+ +A Sbjct: 1 MSTAALLIPAMILDAAFGEPKWLWSRLPHPAVLMGKLVQALDDRLNEGDGRQVKGVIAVA 60 Query: 51 MGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMA 110 + V LL G + + LV +LI + I + H A T + A Sbjct: 61 VLVFVGLLL---GWILSWFGSLVSVLIAAILIAQRSLIDHVRAVATGLQ--NDLDAGRSA 115 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 + + + +++ + +AP FW +V G G + + Sbjct: 116 VAMIVSRDTATMTGPQIARSAIESGAENFSDG-VIAPAFWFLVAGLPGLLIYKLINTADS 174 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHT 230 + + + VL+ +P RL+ ++ AL+ A + Sbjct: 175 MIGYRT---EAYEDFGWAAARLDDVLNILPARLSALLIALVTGRAGDWGEISADARKHRS 231 Query: 231 SQYQVLTRLAQFSLAR 246 +L Sbjct: 232 PNAGWPEAAMARALGV 247 >UniRef50_C0ERM5 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERM5_9FIRM Length = 335 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 27/274 (9%), Positives = 67/274 (24%), Gaps = 34/274 (12%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRL----------------------EAFFRRVKHFSL 40 L +L LIF L Q+ + R+ Sbjct: 8 LLGFILDLIFGDPHGLIHPVQIIGWFIDKLKKGMQHMIYGCSYEEVREKEIERKAGVEKT 67 Query: 41 GRTLGMTIIAMGVTFLL--LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAA 98 M I G ++ + + ++ V + + ++ Sbjct: 68 AGFFLMLFIVAGTFAVVYGILYVANLIHPVLRFCLETFFIYQILATKSLKTESMKVYKKL 127 Query: 99 SRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWG 158 D L + + +++ +AP+ ++ +GG Sbjct: 128 KEGDLIGARKEVSYL-VGRDTENLDESEVAKADVETIAENTADG-VIAPMLFIAIGGAPL 185 Query: 159 PVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----H 213 L + A + + + +++P R A V+ + Sbjct: 186 GFAYKAVNTLDSMV---AYKNEELINIGFFSAKMDDICNFIPARFAAVMLMIASLILRFD 242 Query: 214 GEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 + A+ + + +A +L + Sbjct: 243 FKGAVKIFKRDRFAHLSPNSAQTEAVAAGALQIQ 276 >UniRef50_Q720N7 Cobalamin biosynthesis protein cobD n=17 Tax=Listeria RepID=COBD_LISMF Length = 315 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 23/265 (8%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQL--------DHRLEAFFRRVKHFSLGRTLGMTIIAMG 52 M L I + L W L R++ H G + + Sbjct: 1 MILLFYTSSFILDCLLGDPYSWPHPIKAIGNLIKWLTIILRKIFHGKSLYFAGGLLFVLT 60 Query: 53 V-----TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 V + L + + V++ +G + + + D A Sbjct: 61 VGMTGVVSWFILFLSAKIAYWLYVAVFVYLGYTTLAMTCLAKEARKIQRTLADGDLAAAR 120 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 G + + E ++ +APLF+L +GG + Sbjct: 121 VQVG-MIVGRDTDKLTAEEISKATIETVAENTADG-VIAPLFYLFIGGPVLALMYKAVNT 178 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV-----VYALIGHGEKALPAWF 222 L + + + + + + +++P RLA + L G + Sbjct: 179 LDSMVGY---KNEKYRAIGFVSAKMDDIANFIPARLAWFFLVIASFILRYDGRASWQIGL 235 Query: 223 ASLGDFHTSQYQVLTRLAQFSLARE 247 + + +L Sbjct: 236 RDRKNHTSPNCAYPEGAVAGALGIT 260 >UniRef50_Q97LH9 Cobalamin biosynthesis protein cobD n=21 Tax=Bacteria RepID=COBD_CLOAB Length = 315 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 65/215 (30%), Gaps = 15/215 (6%) Query: 28 LEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTL-----LVWLLIGLLCI 82 LE RR + I + V+ + +L V ++ + + Sbjct: 34 LEKLGRRFFKQDKWLLVFGGFIVIIVSSISFLIPFIILQGVKKFQVIYHVINIFFLWTVL 93 Query: 83 GAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFR 142 A + TA + D + + +++ + Sbjct: 94 AAKSLHKEGKKVYTALEKKDIEDARLKLSY-IVGRQTEGLSKKEIIRADVETIAENSSDG 152 Query: 143 FYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVR 202 +APL + ++GG + G + + ++ + + + + +++P R Sbjct: 153 I-IAPLLFAMLGGAPLAMMYKGINTMDSMLGYM---NFKYRYIGFFPAKIDDLFNFIPAR 208 Query: 203 LAGVVYALI-----GHGEKALPAWFASLGDFHTSQ 232 + G++ L+ G+ ++ + + Sbjct: 209 VTGIIMCLVSPIIGGNIFYSIKIMLRDRKNHKSPN 243 >UniRef50_Q5JI24 Probable cobalamin biosynthesis protein cobD n=9 Tax=Euryarchaeota RepID=COBD_PYRKO Length = 294 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 17/219 (7%) Query: 2 TLFTTLLVLIFERLFK-LGEHWQLDHRLEAFFRRVKHFSLGR------TLGMTIIAMGVT 54 L LL L ++ + R T G+ + +T Sbjct: 3 ALVPFLLALAWDLTLGEPPAKLHPVVWFGRIAGFIDSRYKRRSPVLDFTAGLLTALVVIT 62 Query: 55 FLLLRALQGVLFNV-PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 F L ++ + + + H +T D A + Sbjct: 63 FAFLLSIVPFYAPFPLNYFLAAYLLKSSFAIKSLHEHVSRTIT-----DDIEEKRRAVSM 117 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + + +++ +N +APLF+ ++ G G V L A Sbjct: 118 IVSRNTKVLDEAHLNSAAIESLAENLNDS-VVAPLFYFLLFGLQGAVIYRAVNTLDAMLG 176 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 + + L+++P RL ++Y +G Sbjct: 177 YRNERYEF---FGKFSARLDDALNFIPARLTVLLYLPLG 212 >UniRef50_C1TM10 Cobalamin biosynthesis protein CobD n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM10_9BACT Length = 303 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 27/250 (10%), Positives = 68/250 (27%), Gaps = 14/250 (5%) Query: 3 LFTTLLVLIFERLFKLGEH-WQLDHRLEAFFRRVKHFSLGRTLG--MTIIAMGVTFLLLR 59 L + + ++++ + + +F + GR L +I + L++ Sbjct: 5 LISLTVAVLWDVFLGEPSNAVHPVCWMGSFVDFLWRKRPGRCLFPYGCLIVLSGISLVMV 64 Query: 60 ALQGVLFNVPTLLVWLLIGLL--CIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 + V + + + L + + A D + G + Sbjct: 65 VVSAVYSLPLVFSLPISVWFLKGTFSLSGLLEAGGSIDRALKSGDLSRGRRLLGYHLVSR 124 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLAR 177 +++ APLF+ + G G + + + Sbjct: 125 ETSKLSSSEVAGAAIESLAENFGDGLV-APLFFFALFGLPGALVYRFVNTCDSMLGYRG- 182 Query: 178 YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVY----ALIG-HGEKALPAWFASLGDFHTSQ 232 + +L+W+P RLA ++ A++G + + G + Sbjct: 183 --GDFESGGKFAARLDDLLNWIPARLASLLILAGAAIVGANWRGGAISALRDHGRTSSPN 240 Query: 233 YQVLTRLAQF 242 Sbjct: 241 AGWPMAAMAG 250 >UniRef50_UPI0001698E73 adenosylcobinamide-phosphate synthase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698E73 Length = 175 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 19/186 (10%) Query: 94 YLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIV 153 A R + +A +L E Y + + +L A +FW ++ Sbjct: 1 MFEARERGNEDQARVIARQLIG---DEPPTQEPAYSQAVTEGILSQANSRVFAVIFWFLL 57 Query: 154 GGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGH 213 G G + + L + +R +L +LDW+PVR+ YA+ G Sbjct: 58 LGPLGAILYRVASLLPS-----SRLADESLDFYHASRDLLGLLDWLPVRITAFSYAIAGS 112 Query: 214 GEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVE--------TPKAAVSMAKK 265 E AL AW S +L +L +++ E +AA+S+ + Sbjct: 113 FEDALFAWRNYS---ENSSGGLLVATGSGALRMNNVLEQAEVSSNDGLYLVEAAMSLVWR 169 Query: 266 TSFVVV 271 + Sbjct: 170 ALISWI 175 >UniRef50_Q52683 Cobalamin biosynthesis protein cobD n=6 Tax=Alphaproteobacteria RepID=COBD_RHOCA Length = 314 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 67/256 (26%), Gaps = 15/256 (5%) Query: 1 MTLFTTLLVLIFE------RLFKLGEHWQ---LDHRLEAFFRRVKHFSLGRTLGMTIIAM 51 M + + L + W + + + + + L L + Sbjct: 6 MMVVAIGIDLALGWPDALYKRIGHPVTWIGALIARLEKGWNFKGRLRRLRGVLVALAVIG 65 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 + L + P +L+ ++ + + H A D A Sbjct: 66 TTVVIALAVQLWLPAGWPGVLIGGILAWPFVALRSMHDHVAAVAKPLIAGDLPGARQ-AV 124 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 + + L++ + APLFW V G G L + Sbjct: 125 SMIVGRDPSQLDQPGVARAALESLAENSSDGIV-APLFWGCVAGLPGIAGYKAINTLDSM 183 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGH-GEKALPAWFASLGDFHT 230 + + + +++ +P RL G+ +AL +AL + Sbjct: 184 ---IGHRTDRYEEFGWASARIDDLVNLIPARLTGLFFALASPCRARALAVMARDARSHRS 240 Query: 231 SQYQVLTRLAQFSLAR 246 +LA Sbjct: 241 PNAGWPEAAMAGALAV 256 >UniRef50_Q15YJ2 Adenosylcobinamide-phosphate synthase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YJ2_PSEA6 Length = 298 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 81/260 (31%), Gaps = 16/260 (6%) Query: 11 IFERLFKLGEHWQLDHRLEAFFRRV---------KHFSLGRTLGMTIIAMGVTFLLLRAL 61 + E L E + + R+ + R G + ++ + + Sbjct: 2 LVEMLLHWPERYHPLFFAKLVATRMADKVNPCADRAPLQLRISGTLAPLVLISPVAVILA 61 Query: 62 QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPA 121 + L ++ L+ + V +A + ++ Sbjct: 62 IFINMAEFPLFFDAMLLLVALQYQHVMTRGKKVYSALLSGKKTLARQTLKPM-VLRETEL 120 Query: 122 GCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTP 181 +++ L + ++ + +L+ +GPVT + Y + + + T Sbjct: 121 LSQVGLVKATIESMTLRFHQQYLCTAMLFLL----FGPVTALCYRLVYEFSHCWNTKLTQ 176 Query: 182 HHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQ 241 L V+ WVP+RL ++ L+G A+ AW +S +QVL L Sbjct: 177 FTYFGQPSAKTLLVVQWVPLRLTSFLFTLMGSVTSAISAWR--ALPRSSSAHQVLLALHG 234 Query: 242 FSLAREPHVDKVETPKAAVS 261 +L E + S Sbjct: 235 GALGIELSGPAIYENTKKRS 254 >UniRef50_D2MJU6 Cobalamin (Vitamin B12) biosynthesis CbiB n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJU6_9BACT Length = 290 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 12/231 (5%) Query: 23 QLDHRLEAFFRRVKHFSLGRTLGMTIIAMG--VTFLLLRALQGVLFNVPTLLVWLLIGLL 80 + + + +F + L + + L ++ L+W+++G Sbjct: 7 RCELLIRTWFISATSRRIAGLLLAVFVPGLSFLAAWGSLRLAFLVHPWLGHLLWIVLGYT 66 Query: 81 CIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWIN 140 + A + H A L + + +++ + Sbjct: 67 TLAAKDLADHAWEVHRRLHAGSLQEARQ-AVSLMVGRDTGRLTETEIAGAAIESVAENTS 125 Query: 141 FRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVP 200 +APLF+L +GG + L + + + + + + + +P Sbjct: 126 DG-VIAPLFYLAIGGPPLALAYKALNTLDSMIGY---RDASYRDIGWASAKLDDLANVIP 181 Query: 201 VRLAGVVYALIGHGEK-----ALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 RL+ + L H A + + +L Sbjct: 182 ARLSAGLLVLSSHFRHATVANAWSIYRRDCAKHASPNSGHPEAAMAGALGI 232 >UniRef50_A1AMC9 Cobalamin biosynthesis protein cobD n=13 Tax=Bacteria RepID=COBD_PELPD Length = 323 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 10/217 (4%) Query: 35 VKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAY 94 + + L +T+ + L+ L + L+V L+ C+ A ++ Sbjct: 49 NERIAGVLLLALTVTSAASVTWLMVWGSARLHALAGLMVAALLSSTCLAARSLQRESCLV 108 Query: 95 LTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG 154 A D + + V DE E R L + +APLFWL +G Sbjct: 109 ADALDAGDIASARVKLSYIVGRDTVD--LDEEEIWRALIETVAENTTDGIIAPLFWLALG 166 Query: 155 GTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-- 212 GPV M + + + + RL + +++++P RL ++ ++ Sbjct: 167 ---GPVAGMAFKAVSTLDSMVGYKNERYLRLGWASARMDDLVNYIPARLTALLMVMVAPL 223 Query: 213 ---HGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 A + + A +L Sbjct: 224 IGLSQANAASIALRDRLNHPSPNSAHPESAAAGALGI 260 >UniRef50_A6GTD6 Adenosylcobinamide-phosphate synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GTD6_9BURK Length = 331 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 100/326 (30%), Gaps = 43/326 (13%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVK-----HFSLGRTLGMTIIAMGVTF 55 M+ L+ ++ E G + ++ F + ++ + G T ++ M + Sbjct: 1 MSYLALLIAVVCETFLPDGLFTRARDWVDRFNQELEINLEALGAPGYTHLQWLVPMLIWI 60 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTA---ASRNDSHARATMAGE 112 L + L VL+ + L L L + + R + A ++ D + Sbjct: 61 LGVYFLYQVLWTISPLAAGFLSVFLLLYGLRFRHFAVVFTNAQLFLNQGDFFRARELLLT 120 Query: 113 LTMIHGVPAGCDEREYLRELQN--ALLWINFRFYLAPLFWLIVG-GTWGPVTLMGYAFL- 168 + R R Y + FW +V G G V M + Sbjct: 121 WMKEYDGSEPVVHRPGELVFHAIYHGTERALRQYFSLFFWFLVLPGPMGLVVYMMAHWSV 180 Query: 169 ----RAWQYWLARYQTPHHRLQSGIDAV---------LHVLDWVPVRLAGVVYALIGHGE 215 WQ ++ P + + + L ++W+P RL + L+ + Sbjct: 181 IRERDVWQAQAFAHERPTMQEAWESNKLKAAISPRFVLFAMEWLPARLLALTVGLVAQLD 240 Query: 216 KALPAWFASLGDFHTSQYQVLTRLAQFSLAREP------------------HVDKVETPK 257 A AW + S LT + ++ ++V+ + Sbjct: 241 DAALAWRTAKNHSRFSNRAPLTAVFFTAVGLVGGAAFDPASKAASEGQLLSEENQVQALQ 300 Query: 258 AAVSMAKKTSFVVVVVIALLTIYGAL 283 + K + V +V + I G L Sbjct: 301 QFRQLIFKCAVVWLVATLVFAILGWL 326 >UniRef50_A5UMP3 Cobalamin biosynthesis protein D, CobD n=3 Tax=Methanobrevibacter smithii RepID=A5UMP3_METS3 Length = 347 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 39/313 (12%), Positives = 86/313 (27%), Gaps = 42/313 (13%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFR----RVKHFSLGRTLGMTIIAMGVTFLLL 58 L +I+ L + +FF+ ++K+ G L ++ + L++ Sbjct: 35 FSAIFLDIIYGELPTKIHPVVFIGSIISFFKNIFIKIKNRWSGLFLTLSTCIVSSVLLII 94 Query: 59 RALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHG 118 + +++ LI + T D L + Sbjct: 95 LFYLFSFNIIIFYILFTLILSSTFSIRMLLDTASDVETDLKE-DIDKARQAVSYL-VSRN 152 Query: 119 VPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWG---------------PVTLM 163 E +++ I Y++P+F+ ++ G P Sbjct: 153 TDELTKEHIVSATIESLTENITDS-YISPVFYFMIISIIGIFTDSYAVFVILILIPFNYR 211 Query: 164 GYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKAL 218 + L A + + + +L+++P R+AG+ L + + Sbjct: 212 IFNTLDAMVGYETDELI---DIGFVPAKIDDILNYIPSRIAGLFVVLSAFCLNFDYKNSY 268 Query: 219 PAWFASLGDFHTSQYQVLTRLAQFSLAR------------EPHVDKVETPKAAVSMAKKT 266 + + A +L + AV ++K Sbjct: 269 KILKRDARNCPSPNSGFTMASAAGALNIQLIKLDTYILGDNNKNIETSDIGRAVKLSKLA 328 Query: 267 SFVVVVVIALLTI 279 F+ V I L I Sbjct: 329 IFLFTVTIILFII 341 >UniRef50_A5TUS7 Cobalamin biosynthesis protein CbiB n=8 Tax=Fusobacterium RepID=A5TUS7_FUSNP Length = 325 Score = 113 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 23/262 (8%), Positives = 64/262 (24%), Gaps = 27/262 (10%) Query: 8 LVLIFERLFKLGEHW-QLDHRLEAFFRRVKHFSLGRTLGMTI-IAMGVTFLLLRALQGVL 65 L I + + + ++ F + + + L + +L Sbjct: 11 LAYIIDLILGDPRWLYHPVIIIGKLISFLEKFLYKAKNKILSGAILNILTLSTTFIVSLL 70 Query: 66 FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDE 125 ++ + + D L + + Sbjct: 71 LARAGYVIEIFFLYTTFATKSLADEGKKVYNILKSGDIEKAKKELSYL-VSRDTNTLSLD 129 Query: 126 REYLRELQNALLWINFRFYLAP-------------LFWLIV-GGTWGPVTLMGYAFLRAW 171 + + ++ +++P +F +V +T L + Sbjct: 130 KIIMSVVETIAENTVDG-FISPAFFAFIGGFFYTEIFGKVVSLALPFAMTYKAINTLDSM 188 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVY------ALIGHGEKALPAWFASL 225 + + V V +++P RL G+++ L + +L A+F Sbjct: 189 VGY---KNEKYIDFGKVSARVDDVANFIPARLTGLIFVPLSSLILGYDFKNSLKAFFRDR 245 Query: 226 GDFHTSQYQVLTRLAQFSLARE 247 + +L + Sbjct: 246 NKHSSPNSGQSESAYAGALGIQ 267 >UniRef50_Q486X9 Putative cobalamin biosynthesis protein D n=2 Tax=Alteromonadales RepID=Q486X9_COLP3 Length = 344 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 62/212 (29%), Gaps = 11/212 (5%) Query: 36 KHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTL--LVWLLIGLLCIGAGKVRLHYHA 93 K + LG + V L L + + L+ + L IG + H Sbjct: 75 KATLKAKLLGTLAWCLLVLPLPLIYFYQLNHLIWYWQVLLDASVIYLAIGLNSLHQHAMQ 134 Query: 94 YLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIV 153 + D + G L + ++ +++ L +A L + ++ Sbjct: 135 VYKPLNAEDLTSARHFTGYL-VSRDTSNLSEQEMSRATIESMLEN-GHDSVIASLLYYLI 192 Query: 154 GGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYAL--- 210 GG + L A + + + +L ++ + ++YA+ Sbjct: 193 GGAPLVIIHRLANTLDAM---WGYKNSRFNDFGYASARLDDLLGFISGKCCTLLYAIQGV 249 Query: 211 -IGHGEKALPAWFASLGDFHTSQYQVLTRLAQ 241 G KA+ + + + + Sbjct: 250 KQGKIIKAIVNAYRQGNQYKSHNGGWVMAAGA 281 >UniRef50_C4ZB09 Cobalamin biosynthesis protein CobD n=3 Tax=Clostridiales RepID=C4ZB09_EUBR3 Length = 330 Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats. Identities = 24/273 (8%), Positives = 73/273 (26%), Gaps = 33/273 (12%) Query: 2 TLFTTLLVLIFERLFKLGEHWQ---------LDHRLEAFF---------RRVKHFSLGRT 43 +F + + + L + + +++ R Sbjct: 4 HIFAFIAGFVLDLLIGDPHFIPHPVRLIGSLISFLDKRLNCDAGYNISEKKLNLIKYKRG 63 Query: 44 LGMTIIAMGVTFLLLRALQGVLFNV---PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASR 100 + + + TF + + +++ ++ ++ + +R+ A R Sbjct: 64 MLLAFTVIFATFAMSVIIIVAAYSINLYAGVIAEAVMTWQILATKCLRVESMRVYDAL-R 122 Query: 101 NDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPV 160 D A + + ++ + +AP+ + +G GPV Sbjct: 123 TDGVDAGRRAVSMIVGRDTSVLDAAGVTRAAVETIAENTSDG-VIAPMLYTAIG---GPV 178 Query: 161 TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-------H 213 Y + L + + V++++P R++ + Sbjct: 179 LGFVYKAVNTMDSMLGYKNDKYMYFGRFAARLDDVVNFIPARISAYLMIAAAFIGGRQFD 238 Query: 214 GEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 G+ A + + + + +L Sbjct: 239 GKNAYRIFKRDRFNHASPNSAQTESVCAGALRV 271 >UniRef50_A3DK66 Adenosylcobinamide-phosphate synthase n=3 Tax=Clostridium thermocellum RepID=A3DK66_CLOTH Length = 351 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 63/221 (28%), Gaps = 11/221 (4%) Query: 34 RVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHA 93 R + + + + + + L L + + V + L G+ V + Sbjct: 71 RNERIAGVAFVLVMTTLVALIVAALLELSMFIDPILFHAVNTCLIYLSFGSRAVAKESYK 130 Query: 94 YLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIV 153 A D M + I ++ R +++ R ++P+F+ + Sbjct: 131 VFDALKERDVFKARNMLAAVIGIK-TENLDEKEIIKRTVESTAEDTADR-VISPIFYASL 188 Query: 154 GGTW--GPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 + G + Y + + + + +++++P RL G++ + Sbjct: 189 ASFFSLGATIVWIYKTINILDRMVGYKNDEYRHFGWATAKLDDIVNFIPARLTGIL-IVA 247 Query: 212 GHG------EKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 G + + + +L Sbjct: 248 GAFLTGKEYKNSYSIMMRDRKKHASPNSGYPEAAVAGALGI 288 >UniRef50_A7I470 Cobalamin biosynthesis protein CobD n=5 Tax=Methanomicrobiales RepID=A7I470_METB6 Length = 314 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 63/264 (23%), Gaps = 24/264 (9%) Query: 5 TTLLVLIFERLFKLGEH-WQLDHRLEAFFRRVKHFS-----LGRTLGMTIIAMGVTFLLL 58 T +L L +R + L F S R G+ + V F L Sbjct: 12 TLVLALAIDRAIGDPHSPYHPVALLGRFISLWGRPSRYPPVFQRAAGIFFWLVTVCFFAL 71 Query: 59 -RALQGVLFNVPTLLVWL-LIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 L G L+ + C + H + A L + Sbjct: 72 PFFLFGRYVPWLVYLIDAPFLLKCCFAWRSLEEHAQEVVAALKNG--IDAGREQVGLMVS 129 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIV-----GGTWGPVTLMGYAFLRAW 171 E ++ + ++PLF+ + G G + A Sbjct: 130 RDTACLDPEHIRSAAYESVAENLTDSI-ISPLFYFSLLSPFGFGLAGAAGFRAANTMDAM 188 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVV----YALIGHGEKALPAWFASLGD 227 + R+ + +L+++P R+ + +A G A Sbjct: 189 LGYRDER----ARIGWCPARMDDILNYLPARITTLYLLAWFATQGTFGAAWRTMRRDGKK 244 Query: 228 FHTSQYQVLTRLAQFSLAREPHVD 251 ++ Sbjct: 245 RPGFNGGIVMAAMAGGCGIRFEKP 268 >UniRef50_A1UIE7 Adenosylcobinamide-phosphate synthase n=31 Tax=Actinomycetales RepID=A1UIE7_MYCSK Length = 344 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 61/248 (24%), Gaps = 16/248 (6%) Query: 10 LIFERLFKLGEHWQLDHRLEAFFRRVKHFS------LGRTLGMTIIAMGVTFLLLRALQG 63 L+ + L +++ S G +++ Sbjct: 17 LVADALLGDPRRGHPVAGFGRAAAQLERISYADSRRAGALHTGALLSALAVAGATAQRAA 76 Query: 64 VLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGC 123 T + + G + D A + L Sbjct: 77 RRSPWATTALTAAATFVAAGGTSLCRVGDRLSEVLDTGDIEAGRDLLPSLCG-RDPSVLD 135 Query: 124 DEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHH 183 +++ + APL W V G G + G L A + + Sbjct: 136 AGGLTRAAVESIAENTSDAQV-APLVWAAVAGVPGLLVYRGANTLDAM---IGNRSPRYA 191 Query: 184 RLQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASLGDFHTSQYQVLTR 238 R + L+++P RL G++ AL G A+ AW + V Sbjct: 192 RFGWAAARLDDALNYLPARLTGLLAALCAPVVGGSPVAAMHAWRRDAHRHPSPNAGVAEA 251 Query: 239 LAQFSLAR 246 +L Sbjct: 252 TFAGALGV 259 >UniRef50_B2RK82 Cobalamin biosynthesis protein n=29 Tax=Bacteria RepID=B2RK82_PORG3 Length = 340 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 55/199 (27%), Gaps = 8/199 (4%) Query: 48 IIAMGVTFLLLRAL-QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHAR 106 + T LL V F V +L++ + I C+ + A R+ R Sbjct: 82 VFVCVYTILLDDFFRIAVAFAVASLILAIGI-FFCLAGTTLIREVRMVFEAVDRSLEEGR 140 Query: 107 ATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYA 166 + A + L+ ++ +AP+FW + G G + Sbjct: 141 KQ--VTRIVGRDTAALSAQEVRTAALETLSENLSDG-VVAPMFWYMWLGLPGMMAYKMIN 197 Query: 167 FLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLG 226 L + + R+ + V +++P RL + L+ Sbjct: 198 TLDSMIGYKTARYFLFGRI---AAKIDDVANYIPARLTAWLMILVSGKLHLFSFVRRYGR 254 Query: 227 DFHTSQYQVLTRLAQFSLA 245 + L Sbjct: 255 QHASPNSGYPEAALAGILN 273 >UniRef50_D1B938 Cobalamin biosynthesis protein CobD n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B938_THEAS Length = 311 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 28/261 (10%), Positives = 68/261 (26%), Gaps = 19/261 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEH-WQLDHRLEAFFRRVKH--------FSLGRTLGMTIIAM 51 M T L + + + + + RV+ + + + + + Sbjct: 1 MLPLTLALAVAMDLAVGDPQWRFHPVRLVGMLAERVESACRSLPVNPKVQGGIFLAVTLL 60 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 L+ L+ + L + C+G + L+ D A Sbjct: 61 AAVLPLMVFLEILQVLRLGWLGGAITIYFCLGGKSLATEVTRVLSHLRSRDLDGAAEGL- 119 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAW 171 + + V ++ + + L + +GG L A Sbjct: 120 KFIVSRDVEGMDQGYLVRSAIETLAENFSDA-VTSTLLYGALGGPVLAWIHRVVNTLDAM 178 Query: 172 QYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASLG 226 + + S + +L+++P R++ +V A G+ + A Sbjct: 179 VGY---RDERYSDFGSASARLDDLLNFLPSRMSALVVAAAGQIMGGNFKDAWEGAKEDAP 235 Query: 227 DFHTSQYQVLTRLAQFSLARE 247 + +L Sbjct: 236 KDESPNSGWPISAFAHALGVT 256 >UniRef50_O28933 Probable cobalamin biosynthesis protein cobD n=1 Tax=Archaeoglobus fulgidus RepID=COBD_ARCFU Length = 290 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 65/225 (28%), Gaps = 20/225 (8%) Query: 4 FTTLLVLIFERLFK-LGEHWQLDHRLEAFFRRVKHFSLGRTL-----GMTIIAMGVTFLL 57 L L+ + ++ + L G + +TF L Sbjct: 6 VVLLTTLMLDAAVGEPPALLHPVVWYGKLISLLERAKFRKMLVEIFYGAFCCLIVITFAL 65 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 + +L + + L + + I + + A A ++ + Sbjct: 66 ILSLLPFPYPL-NFLWAVYLLFSSI-------SVKSMVNHARVCVESGVDRKAVQMIVSR 117 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLAR 177 +E+ +++ +APLF+ + G G V A + Sbjct: 118 NTEELSEEQLCSAVIESVAENYVDG-VVAPLFYFSIFGVAGAVVYRAVNTCDAMVGYRKG 176 Query: 178 YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI--GHGEKALPA 220 + + +L+++P RL+ + + L+ G L Sbjct: 177 R---YEAFGKFAARLDDILNYIPARLSLLFFELLKRGAFSYGLKR 218 >UniRef50_C4LHY4 Cobalamin biosynthesis protein n=5 Tax=Corynebacterium RepID=C4LHY4_CORK4 Length = 317 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 26/253 (10%), Positives = 73/253 (28%), Gaps = 21/253 (8%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH--FSLGRTLGMTIIAMGVTFLLLR--AL 61 + + + + + + ++ ++ R+ G+ A+ V +L AL Sbjct: 19 LVGGFLADAIVGDPASYHPVALFGRAAQALEKRIYADSRSRGVAFEALSVGIPVLVTTAL 78 Query: 62 QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRN-------DSHARATMAGELT 114 G +V ++ +G + +A + D + Sbjct: 79 AGPRRTTRHAVVLGVVTFFSLGGTSLARTGGRVASALEQYQSGMTTIDEPRQW---VPWL 135 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + + +++ + L W + G G V L A + Sbjct: 136 CSRDPNSLDADGIARAAVESLAENTSDASV-GTLIWGALAGAPGVVAHRCINTLDAMVGY 194 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 + + + +W R+ + ++ +G +++ A + + Sbjct: 195 KSDRYMNFGW---AAAKLDDLANWPVARVTALTHSAVGG-RRSIKACRKQ--NHPSPNAG 248 Query: 235 VLTRLAQFSLARE 247 V+ A +L + Sbjct: 249 VVESTAAGALGVQ 261 >UniRef50_Q0C212 Cobalamin biosynthesis protein CobD n=8 Tax=Rhodobacterales RepID=Q0C212_HYPNA Length = 316 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 61/225 (27%), Gaps = 9/225 (4%) Query: 26 HRLEAFFRRVKHFSLGRTLGM----TIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLC 81 LE R R + + T+L + + + +V I Sbjct: 39 GWLEQGLNRQAFSHWVRYMFGGFTSLLAVTLATWLAVLLVHSLPDGWTGYVVQAAIASSL 98 Query: 82 IGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINF 141 + + + H A S D + A A L + + +++ + Sbjct: 99 LASRSLYQHVAAVAVPLSVGD-QSAARKAVSLIVGRDPSRLDEAGIARASIESLAENASD 157 Query: 142 RFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPV 201 +APLFW + G G V L + + + + V + +P Sbjct: 158 G-VIAPLFWGALFGIPGLVAYKTINTLDSI---IGHRNERYEAFGGFAARLDDVANLIPA 213 Query: 202 RLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 R+ G+ + AL + +L Sbjct: 214 RMTGLFVVIASMRFSALAIVVRDARKHRSPNAGWPEAAMAGALGI 258 >UniRef50_B5JDR8 Cobalamin biosynthesis protein CobD n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JDR8_9BACT Length = 312 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 71/250 (28%), Gaps = 14/250 (5%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRT-LGMTIIAMGVTFLLLRALQ 62 L +F ++ + L RV SLGR+ I+ +GV + L A Sbjct: 11 IGVALDFVFGDPRRMPHLVRFVGWLAVQGERVLVASLGRSVFAGLILWLGVIGVCLAAYA 70 Query: 63 GVLFN------VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 G+ + L + L+ C+ + H A T + S R + Sbjct: 71 GLAWGLGLIGHWAKLGLDALVVFQCVAYRDLVKHVLAVKTGLETSLSEGRRR--VSWIVG 128 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 + +++ +N +APLFW G G + + A Sbjct: 129 RDTDRMEADDVCRAAIESGAENLNDA-VVAPLFWAAFLGPVGALVFRVSNTMDAMV---G 184 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 L + L++VP RL ++ + + + Sbjct: 185 HRTERFELLGKVSARIDDGLNFVPARLCCLLILEVSKVGRW-RRLKGDAALHPSFNAGWP 243 Query: 237 TRLAQFSLAR 246 L Sbjct: 244 EAAMASRLGV 253 >UniRef50_C6D295 Cobalamin biosynthesis protein CobD n=4 Tax=Firmicutes RepID=C6D295_PAESJ Length = 326 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 26/261 (9%), Positives = 63/261 (24%), Gaps = 23/261 (8%) Query: 5 TTLLVLIFERL-FKLGEHWQLDHRLE----AFFRRVKHFSLGRTLGMTIIAMGVTFLLLR 59 ++ I + + + + R+ + R GM II VT + Sbjct: 16 AIVIDWIIGDPKWPTHPVIWIGRLIRVLEKSLRRKEEGRDARRIKGMGIILTIVTLAVSY 75 Query: 60 ALQG-------VLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 + + V I ++ + + G Sbjct: 76 GIMWGVTAAAAWIHPWLGYAVSAWFISTTIAVKGLKDAAMLVYRPLAAGNLEDARKFVGY 135 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + ++ +++P+ + I+GG + L + Sbjct: 136 -IVGRDTENLTPPEASRAAVETVAENTVDA-FISPILFAIIGGAPLAMLYRATNTLDSMV 193 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPA------WFASLG 226 + L+++P RL G++ L + + A Sbjct: 194 GYRNDNYVNFGW---CSARTDDALNYIPARLTGLLLTLAAFLNRGMSAVRSWASVRRFAR 250 Query: 227 DFHTSQYQVLTRLAQFSLARE 247 + + +L E Sbjct: 251 YHPSPNSGIPESAVAGALGIE 271 >UniRef50_C6BSX1 Cobalamin biosynthesis protein CobD n=2 Tax=Desulfovibrio RepID=C6BSX1_DESAD Length = 319 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 30/255 (11%), Positives = 69/255 (27%), Gaps = 16/255 (6%) Query: 3 LFTTLLVLIFERLFKLGEHWQ-----LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLL 57 ++ L+ + + + + + L+ + V + R + + + ++ Sbjct: 8 FLVPVIALVLDLVLGDPKWFPHPVRYIGMALDKYKNWVFSTGMSRKIMGGVGVLVFAIVV 67 Query: 58 LRAL-QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 L + +L+ L + + G + + EL + Sbjct: 68 WSVLKIFLAIPFVGVLIALYLAYAGLALGSLLSEHKNAAAMLDSGRIEDARKAIAEL-VS 126 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 V + ++ +N ++AP F+L+V G G Y + Sbjct: 127 RDVSELDENGLRKALAESTSENLNDG-FVAPFFYLVVTGPAGM---WVYKTISTMDSMWG 182 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFHTS 231 VL ++P R+ G + G E A + Sbjct: 183 YKNEEFKEFGYYAAKADDVLAFIPARITGFMMLAAGRIMKLDWESAYDNLIEDANKTESP 242 Query: 232 QYQVLTRLAQFSLAR 246 A + L Sbjct: 243 NAGWSMAPAAWLLGA 257 >UniRef50_A5ZUK0 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZUK0_9FIRM Length = 211 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 15/162 (9%), Positives = 42/162 (25%), Gaps = 12/162 (7%) Query: 92 HAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL 151 A + A + + +E ++ + +AP+ ++ Sbjct: 1 MKVYDALKKGTIEDAR-HAVSMIVGRDTAELTEEGVTKAAVETVAENTSDG-VIAPMIYM 58 Query: 152 IVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 +GG G L + + +++P R++G + + Sbjct: 59 AIGGVPLMFLYKGINT---MDSMLGYKNDKYLYFGRCAAKLDDAANYLPSRISGWLM-VA 114 Query: 212 GHGE------KALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 G A + + + + +L + Sbjct: 115 GAFVIGLDSRNASRIFKRDSRNHASPNSAQTEAVMAGALDVQ 156 >UniRef50_C0GMN8 Cobalamin biosynthesis protein CobD n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMN8_9DELT Length = 329 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 73/271 (26%), Gaps = 28/271 (10%) Query: 2 TLFTTLLVLIFERLFKLGE-HWQLDHRLEAFFRRVKHF-----SLGRTLGMTIIAMGVTF 55 L +L + L + A RV+ GR GM + A ++ Sbjct: 4 ALIILVLAFAMDLLLGDPVYRLHPVRLMGAAVSRVERLFFSQGLRGRGGGMILTAAMLSG 63 Query: 56 LLLRALQGVLF----NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 + + A G+ + + + C+G + H A D Sbjct: 64 VSILAAAGIFLASMVPGLEFIFMVFLVYSCMGLKDLVGHTRPIARALEEGDLGRARQKL- 122 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWG-----------PV 160 ++ + A +++ +LA FW + G G + Sbjct: 123 QMIVGRDPSALDSSGVARAAVESVAENFVDG-FLALAFWFVAGCILGQVLGVEPAFAGVL 181 Query: 161 TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGE 215 Y + + + + + + VL+ VP RL+ + +L + Sbjct: 182 LAANYRMVNTLDAMVGYRSSRYMQFGRFAARLDDVLNHVPARLSILFISLAALACGYDWK 241 Query: 216 KALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 +L + +L Sbjct: 242 GSLGTGLRDRLKHASPNAGHSEAAMAGALNI 272 >UniRef50_A8ZY32 Cobalamin biosynthesis protein CobD n=2 Tax=Desulfobacteraceae RepID=A8ZY32_DESOH Length = 321 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 25/258 (9%), Positives = 65/258 (25%), Gaps = 21/258 (8%) Query: 5 TTLLVLIFERLFKLGEHW-QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQG 63 L I + + + + ++ + + L+ Sbjct: 14 VILAAFILDFFVGDPDFFAHPARLMGRAINTLEPVFRKLSRNPVLAGGLFAIALIAGTWL 73 Query: 64 VLFNVPTLLVW----------LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 V + L +++ CI A + A L ++ D + L Sbjct: 74 VALFMLAFLEEISPAVRVAGEVVLLFFCISARSLEKGARAVLVPLAKGDIYRAREGL-CL 132 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + V ++ ++ + ++PLF+ ++GG + L + Sbjct: 133 IVGRDVHRLDEKGVARATVETVAENLVDG-VISPLFFAVIGGVPLALAYKMVNTLDSMVG 191 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG-----EKALPAWFASLGDF 228 + + + +++P RL+ + A A Sbjct: 192 Y---KDDRYEAFGKASARIDDGANFIPARLSVAIIAAAAFLLFRKGGAAFKTALRDGRCH 248 Query: 229 HTSQYQVLTRLAQFSLAR 246 + +L Sbjct: 249 SSPNAGYAEAAFAGALGL 266 >UniRef50_Q7VEN1 Cobalamin biosynthesis protein cobD n=24 Tax=Actinomycetales RepID=COBD_MYCBO Length = 313 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 64/250 (25%), Gaps = 14/250 (5%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFRRVK--HFSLGRTLGMTIIAMGV--TFLLLRAL 61 L+ + + +F + +++ + GR G + + V LL AL Sbjct: 13 VLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAAL 72 Query: 62 QGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPA 121 Q + + +G + R+D A + L Sbjct: 73 QRLPGRCWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCG-RDPAQ 131 Query: 122 GCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTP 181 L++ + PL W G + L + + + Sbjct: 132 LGGPGLTRAALESVAENTADAQVV-PLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYLR 190 Query: 182 HHRLQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASLGDFHTSQYQVL 236 + ++V R V+ + G A+ AW + V+ Sbjct: 191 FGW---AAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVV 247 Query: 237 TRLAQFSLAR 246 +L Sbjct: 248 EAAFAGALDV 257 >UniRef50_C8W3Q8 Cobalamin biosynthesis protein CobD n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3Q8_DESAS Length = 336 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 67/264 (25%), Gaps = 24/264 (9%) Query: 2 TLFTTLLVLIFERLFKLGEHW--------QLDHRLEAFFRRV---KHFSLGRTLGMTIIA 50 T+ + + L +L LEA F R+ L + + Sbjct: 17 TIINVVAAYFLDLLIGDPRWLTHPVVIIGKLISWLEAVFFRLCKSPAALRLAGLLLAVTV 76 Query: 51 MGVTFLLLRALQGVLFNVPTLL---VWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 + + + R + + LL V + + + A + + Sbjct: 77 VAAAYSVTRLIVEACTGINPLLGQAVEIWLLSTTLAAKSLAGAGREIYRLLLDGNLQEAR 136 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 G + ++ I L+PLF+ +GG + Sbjct: 137 VKVG-WIVGRDTAKLDQSGVTRATVETVAENIVDG-VLSPLFYAFLGGAPLAMAYKAVNT 194 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVR-----LAGVVYALIGHGEKALPAWF 222 L + + + L + + +++P R L L + +A Sbjct: 195 LDSMVGY---KNEKYLHLGWASARLDDLANFLPARWAGALLLSASALLGYNSGQAYHTIK 251 Query: 223 ASLGDFHTSQYQVLTRLAQFSLAR 246 + + +L Sbjct: 252 TYAAGHPSPNSGIPESAVAGALGV 275 >UniRef50_D1WX30 Cobalamin biosynthesis protein CobD n=7 Tax=Streptomyces RepID=D1WX30_9ACTO Length = 341 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 57/244 (23%), Gaps = 12/244 (4%) Query: 10 LIFERLFKLGEHWQLDHRLEAFFRRVKHFSL------GRTLGMTIIAMGVTFLLLRALQG 63 LI + L RV+ G + V L A Sbjct: 15 LIADALLGDPRRGHPVAGFGRAAARVESLLWRDDRGRGALHTLVCAGGAVGAAALTARAV 74 Query: 64 VLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGC 123 + + +G + A A + D L P Sbjct: 75 RGRPALAVALTAATAWSVVGGTSLGREARAIGGALAAGDLEVARERLPHLCGRD--PHSL 132 Query: 124 DEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHH 183 D R + ++ + L W +GG G V L A + + Sbjct: 133 DGPGIARAVVESVAENTSDAVVGALVWGAIGGVPGLVGFRAVNTLDAMVGHKSPRYRRYG 192 Query: 184 RLQSGIDAVLHVLDWVPVRLAGVVYALIGHG-EKALPAWFASLGDFHTSQYQVLTRLAQF 242 + + W RL + G A+ AW A G + + Sbjct: 193 W---ASARLDDLAGWPGARLTAALAVAAGGRPRAAVRAWRADAGRHPSPNAGPVEASFAG 249 Query: 243 SLAR 246 +L Sbjct: 250 ALGV 253 >UniRef50_D1PMB8 Cobalamin biosynthesis protein CobD n=7 Tax=Bacteria RepID=D1PMB8_9FIRM Length = 322 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 28/264 (10%), Positives = 66/264 (25%), Gaps = 25/264 (9%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHR--------LEAFFRRV--KHFSLGRTLGMTIIAMGV 53 L + + LE+ RR + RT G+ + A+ Sbjct: 5 LAIALGFLLDLWLADPGWMPHPVVAMGKCIAKLESVLRRSFPATPTGERTAGIVLAAVLP 64 Query: 54 TFLLLR-----ALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARAT 108 LL L V + + + + D A Sbjct: 65 LGTLLFTTLVCWAADFLHPALGFAVQTIWCWQALAVKGLAAESRNVYGCLAAEDLPAARK 124 Query: 109 MAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFL 168 + E ++ + +APL ++++GG + + Sbjct: 125 AVAR-IVGRDTQNLTVEGVTKAAVETVAENFSDG-VVAPLLYMLIGGAPLALCYKAINTM 182 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFA 223 + + + + +++P RLA +V+ + + + W Sbjct: 183 DSMVGYKNQRYLYFGW---AAAKLDDAANFLPSRLAALVWIVAAALTGQDAKNSWRIWRR 239 Query: 224 SLGDFHTSQYQVLTRLAQFSLARE 247 + + +L + Sbjct: 240 DRRNHASPNSAQTESACAGALGVQ 263 >UniRef50_A1HPW4 Cobalamin biosynthesis protein CobD n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPW4_9FIRM Length = 317 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 54/246 (21%), Gaps = 24/246 (9%) Query: 7 LLVLIFERLFKLGEHW---------QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF-- 55 L+ + + + + R + G ++ + Sbjct: 11 LIAVGVDAFIGDPRFRFHPVVLIGKLIVSLEKGLRRSQHAPFTQKLAGAVLVVSVLAIVY 70 Query: 56 ---LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 L+ + V L L+ I + D G Sbjct: 71 GITWLIMKVLQAWHPVAALAGGALLLSFAISPRSLAEAGQEIYGYLVTGDLAQARFKVG- 129 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + + ++ I ++PLF+ +GG L + Sbjct: 130 WIVGRDTDKLDEAEITRATVETISENIVDG-VVSPLFYAAIGGVPLAFLYRAVNTLDSMV 188 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGD 227 + + V +++P RL G+ + A + Sbjct: 189 GY---KNEKYRNFGMVAARTDDVFNYLPARLTGIFIIIAAWLLRFDAWGAAKTIWRDAAK 245 Query: 228 FHTSQY 233 + Sbjct: 246 HPSPNS 251 >UniRef50_B9QU45 Cobalamin biosynthesis protein CobD n=4 Tax=Rhodobacteraceae RepID=B9QU45_9RHOB Length = 325 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 63/232 (27%), Gaps = 16/232 (6%) Query: 14 RLFKLGEHW------QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFN 67 R W LD L R + + + + I+ +G L + Sbjct: 29 RRLPHPVVWIGKVISALDQALNRKDWRPQTRRVAGIVTLLILLVGSIALGFLVQEFATAI 88 Query: 68 VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 + ++I + I + H A N A A + + + + Sbjct: 89 PFGEFLIVVIAAVLIAQKSLYEHVAAVRIGLLNNGL-AGGQQAVAMIVGRDPNSLDEAGV 147 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 +++ + AP+FW V G G + + + + Sbjct: 148 SRAAIESCAENFSDGIV-APVFWFAVLGLPGLIAYKAVNTADSM---IGHKNEIYTDFGW 203 Query: 188 GIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASLGDFHTSQYQ 234 +++ RL+G+ AL G K+ A + Sbjct: 204 ASARFDDLINLPASRLSGMFLALAAPLAGGSVRKSFSAMVRDAKQHRSPNAG 255 >UniRef50_Q3ZY68 Cobalamin biosynthesis protein n=5 Tax=Dehalococcoides RepID=Q3ZY68_DEHSC Length = 307 Score = 103 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 73/256 (28%), Gaps = 23/256 (8%) Query: 19 GEHWQLDHRLEAFFRRVKHFSLGR------TLGMTIIAMGVTFLLLRALQGVLF-----N 67 L F + FS R T G + + V+ + + Sbjct: 21 PAPLHPVVWLGKFISLLDRFSPSRNPKIQFTYGAFLSILTVSVTFTAVFFILGYLKEFNT 80 Query: 68 VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT--MIHGVPAGCDE 125 +L LI + + +N S A L + H E Sbjct: 81 ALYVLAGGLILKPAFCLREQWVIALKIKKLLEKNRSGAPPKELETLLGTVPHAEDGPSRE 140 Query: 126 REYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRL 185 +++ + F++APLF+ I G G L + + + L Sbjct: 141 DVISASIRSISENASD-FFVAPLFYFIFLGVPGAFAYRAINTLDSMIGYHG----KYEYL 195 Query: 186 QSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFASLGDFHTSQYQVLTRLA 240 + V ++VP RL +++ + + ++AL + + + + Sbjct: 196 GKFAARLDDVANFVPARLTALLFVIGAFILHQNYKQALRSAISDHANTTSPNAGWPMAAM 255 Query: 241 QFSLAREPHVDKVETP 256 +L + T Sbjct: 256 AGALDVSLEKSRCYTM 271 >UniRef50_A7C0E6 Cobalamin biosynthesis protein CbiB n=1 Tax=Beggiatoa sp. PS RepID=A7C0E6_9GAMM Length = 305 Score = 103 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 75/256 (29%), Gaps = 20/256 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-------FSLGRTLGMTIIAMGV 53 M LL + ++ F + F + + S G + + + Sbjct: 1 MFFDIALLAYLIDKYFGEFPIKHPVVWMGEFIQAFEARFYQDTILSGGLLVVGLLSVTFL 60 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L L L +V L+ +I I + L A D A + Sbjct: 61 ITSGLVYLASFLPSVLEWLILSVIASTGIAMQMLHASVKQVLMA----DDP---KKALSM 113 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + D Y L+ ++ +APLF+L++ G G L + Sbjct: 114 LVSRDTQQMNDTEIYKTCLETWAENLSDG-VIAPLFYLMLFGLEGLALYKAINTLDSMVG 172 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG--HGEKALPAWFASLGDFHTS 231 + ++R + + +++P RL ++ L + A + + Sbjct: 173 YKTPR---YNRFGRIAAKLDDIANYLPARLTALLIVLFSGQQAKVAWKIVWRDGHQLESP 229 Query: 232 QYQVLTRLAQFSLARE 247 + ++ + Sbjct: 230 NAGLPIAAMAGAIDVK 245 >UniRef50_A0Z7A0 AmpE protein n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z7A0_9GAMM Length = 268 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 81/268 (30%), Gaps = 19/268 (7%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF---LL 57 MT L+ G D EA RV LG ++ + L+ Sbjct: 1 MTYLAFLVATGLYLAIGSGGPLHNDRWYEALQGRVAALEPDFWLGFVLLVVVPCAGFTLV 60 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 + + LL+ G + + + + + D + Sbjct: 61 YAIFEEMFGAAAVLLLGTPALFFSFGRLQWPELVNRFKSRVAAGDVEGALLALDA--AGY 118 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLAR 177 + D R+ LL+ F+ + +P+F+ + G + V Sbjct: 119 RMLQVDDAISAERDGARFLLYEGFQRWFSPVFYFLFFGPFFAVGYRLVVL---------- 168 Query: 178 YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLT 237 I +L+ LDW+P R+ + + IG+ E P + + D ++L Sbjct: 169 ---GAGDRNGPISRLLYFLDWLPARILLLTFGAIGNFESIRPLFMNKVLDADIQTNELLM 225 Query: 238 RLAQFSLAREPHVDKVETPKAAVSMAKK 265 + + + + + + K+ Sbjct: 226 QGFELASPVTETALD-QQIERVRELLKR 252 >UniRef50_Q3ILJ8 Putative cobalamin biosynthesis protein n=2 Tax=Alteromonadales RepID=Q3ILJ8_PSEHT Length = 314 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 78/253 (30%), Gaps = 13/253 (5%) Query: 3 LFTTLLVLIFERLFKLGEHWQ--------LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVT 54 ++ L+ ER L + + ++ + S + ++ Sbjct: 12 FIVFIMALLAERFLPLVSWYHPNTALTAIFSAIGKRIYKVAEPNSYQYLAATLASTLILS 71 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 +L+ + + F L+ LI LC+ + + +N A + L Sbjct: 72 VVLIIIVLLLEFAFYPELLAGLILYLCLESKAIDKKALRIAKLTKQNQKSAARELLKPLV 131 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 ++ L +L+ R+Y +F +V G + + + Sbjct: 132 ARDVTK--LSGAGIIKALIESLILRTARYYFVVIFVFLVLGPIAALAYRLLTLI---EQA 186 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 P+ + L +++++P+RL + A + ++ F+ + Sbjct: 187 WRSNIKPNSPFLKPLKITLFIIEFIPMRLLALTIAASKASKLSMHYIKHYGRHFYQTNTG 246 Query: 235 VLTRLAQFSLARE 247 L SL + Sbjct: 247 WLLSTCSASLGVQ 259 >UniRef50_Q2GBK1 Adenosylcobinamide-phosphate synthase n=4 Tax=Alphaproteobacteria RepID=Q2GBK1_NOVAD Length = 316 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 60/211 (28%), Gaps = 7/211 (3%) Query: 36 KHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYL 95 + + T+ + + G +L++L + + ++ + + H Sbjct: 54 RRMAGAVTVLILLGMAGGAGWVLQSLLVAIAGPWAWPLIAVLAWPGLAQRSLYDHVRLVA 113 Query: 96 TAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGG 155 A R D A G + + A D +++ +APLFWL+V G Sbjct: 114 DALERQDLPAARATVG-MIVGRDTAALDDAGVARAAIESLAESFCDG-VVAPLFWLLVLG 171 Query: 156 TWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGE 215 G + + ++ +P RL+G++ L G Sbjct: 172 LPGIWAYKAINTADSMIGHREERWRAYGW---AAARTDDAMNLIPARLSGLLICLCG--G 226 Query: 216 KALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 + + +L Sbjct: 227 GGWRILWRDASRHASPNAGWPEAAMAGALGL 257 >UniRef50_C9R8D5 Cobalamin biosynthesis protein CobD n=1 Tax=Ammonifex degensii KC4 RepID=C9R8D5_AMMDK Length = 318 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 60/247 (24%), Gaps = 20/247 (8%) Query: 14 RLFKLGEHW------QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF---LLLRALQGV 64 R + L RR G + + +GV + LL Sbjct: 20 RWLPHPVRLFGRVISLYERVLVGITRRPLILLGGGIVLALALPVGVWWGACWLLDLAYSW 79 Query: 65 LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCD 124 + L+ + + + A D G + + V Sbjct: 80 NY-WTGLVTESCLLATTVALKGLGQAALAVRDLLRTGDLPGARREVG-MIVGRDVDQLDT 137 Query: 125 EREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHR 184 +++ +APLF+ +GG + L + + + Sbjct: 138 SGVIRAAVESVAENTVDA-VIAPLFYAFLGGAPLALAYRAVNTLDSMVGYRR---AHYRY 193 Query: 185 LQSGIDAVLHVLDWVPVRLAGVVYALI-----GHGEKALPAWFASLGDFHTSQYQVLTRL 239 L + +L+++P RLA ++ L + + Sbjct: 194 LGWASARLDDLLNFLPARLAASLFILTAFLWRADVRHTWHVLCRDGRKHASPNSGLPEAA 253 Query: 240 AQFSLAR 246 L Sbjct: 254 MAGLLGV 260 >UniRef50_Q0W1P4 Adenosylcobinamide-phosphate synthase n=2 Tax=Euryarchaeota RepID=Q0W1P4_UNCMA Length = 315 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 77/290 (26%), Gaps = 19/290 (6%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLR---- 59 L+ L L + + G ++A VT ++ Sbjct: 7 LALLIDLFIGEPRTYAHPVVWIGTLIGYLKERAPKRFRFAFGFFLMAFSVTLFVVAGCAL 66 Query: 60 -ALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHG 118 L ++ V LLV + + L Sbjct: 67 SILSYMISPVLGLLVTGYLLKSTFSLSFLWGISREIYEDLKYGRFDLAKAKLPALVGRDV 126 Query: 119 VPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARY 178 +E + + +L +APL + + G G + L + + Sbjct: 127 SK--LNEGQMSSCVVESLGESFVDGIMAPLLYFTLFGLPGALAYRAINTLDSMVGY---K 181 Query: 179 QTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI----GHGEKALPAWFASLGDFHTSQYQ 234 H + + +++++P RL+ ++ ++ GH +A+ ++ Sbjct: 182 DEKHREMGFASAKMDDLVNYIPARLSLLLISVAAIATGHPLRAVKIGLRDARKPPSTNSG 241 Query: 235 VLTRLAQFSLAREPHVDKVETPK-----AAVSMAKKTSFVVVVVIALLTI 279 L AVS + + ++ ALL + Sbjct: 242 FPMATFAGGLGVRLEKLNYYVLGEGLKPCAVSDIPRAIWFNRIISALLLV 291 >UniRef50_Q0RLS4 Cobalamin biosynthesis protein cobD n=10 Tax=Actinomycetales RepID=Q0RLS4_FRAAA Length = 373 Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 49/193 (25%), Gaps = 10/193 (5%) Query: 59 RALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHG 118 AL + +++ + + +G +R D A L Sbjct: 98 IALADSVAPWAPVVMTAALTWVVLGGASLRRQGRRLGAELRAGDLAAARARLPTLCG-RD 156 Query: 119 VPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARY 178 + +++ +APL+W G G L A + + Sbjct: 157 PSRLDEAGVARGAIESIAENTCDA-VVAPLWWGAFAGLPGLAGYRAVNTLDAM---IGHH 212 Query: 179 QTPHHRLQSGIDAVLHVLDWVPVRLAGVVY-----ALIGHGEKALPAWFASLGDFHTSQY 233 + R + +++ +P RL + + G A + Sbjct: 213 SDRYERFGWAAARLDDLVNLLPARLCALATCACAPVVGGSVADAFWVMRRDGRSHPSPNA 272 Query: 234 QVLTRLAQFSLAR 246 + +L Sbjct: 273 GMAEAAFAGALGL 285 >UniRef50_UPI0001C41EAA cobalamin biosynthesis protein CbiB n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41EAA Length = 341 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 29/326 (8%), Positives = 84/326 (25%), Gaps = 50/326 (15%) Query: 1 MTLFTTLLVLIFERLFK------LGEHWQ------LDHRLEAFFRRVKHFSLGRTLGMTI 48 M L L L + L W + L + ++ L + + Sbjct: 12 MLLTILLFSLAVDLLLGEFPMQIHPVVWIGKIISFFKNILIKYDNKIAGLILSIAVIIVS 71 Query: 49 IAMGVTFLLLRALQGVLFNVPTLLV---WLLIGLLCIGAGKVRLHYHAYLTAASRNDSHA 105 + + + + ++ L +L+ + N+ + Sbjct: 72 SLIVLIPMAIARYLLPYNDMMIYLFKLIAILLLTSTFSVKLLLDSARDVEKDLRNNNLNK 131 Query: 106 RATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGT--------- 156 L + E ++ I + + +F+ + G Sbjct: 132 ARQAVSYL-VSRDTNELNKEHVISAVIETLSENIPDSYV-STVFYYSIVGIIASLCGIGD 189 Query: 157 -----WGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI 211 + + + + + + + L+++P R +G + + Sbjct: 190 FDVIILAVLAAFIHRVVDTMDSMVGYKTKELYNIGFIPAHLDDALNYIPARFSGALIVVS 249 Query: 212 G-----HGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVD------------KVE 254 + + AL + + +L + + V+ Sbjct: 250 AMFLRLNWKNALFIMRRDANNCDSPNSGYTMATVAGALNIQLEKEGVYTLGDNINPINVD 309 Query: 255 TPKAAVSMAKKTSFVVVVVIALLTIY 280 + AV +A+ + +V I + ++ Sbjct: 310 CIEKAVDLAR--LTIFLVTIFFMFVF 333 >UniRef50_C9M653 Cobalamin biosynthesis protein CobD n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M653_9BACT Length = 325 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 66/264 (25%), Gaps = 23/264 (8%) Query: 5 TTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRT--------------LGMTIIA 50 +F L R ++ R+ L T+ Sbjct: 10 ALAADWLFGDPEGLPHPVCAVGRFIGWWDRLARKRLSGGERSAFRLRLAGLAGWCATVAG 69 Query: 51 MGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMA 110 + A G L LV + A + A D + Sbjct: 70 TFLFVWATVAAAGRLSAAAGFLVQTYWLFSGLAATCLSREAAAVAGFLRAGDLPSARRRL 129 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWG--PVTLMGYAFL 168 L + + ++ + LAP+FW +G +G + Y + Sbjct: 130 AGL-VGRDTGELSSYQVVQAVVETVAENCSDGA-LAPIFWAALGAPFGLSAPAMWAYKAV 187 Query: 169 RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG-----HGEKALPAWFA 223 + H + V +W+P RLA +++AL+ G K L F Sbjct: 188 NTMDSMVGYLDETHRDIGFVPAKADDVFNWIPARLAVILFALMAPSLGFDGAKTLRTGFE 247 Query: 224 SLGDFHTSQYQVLTRLAQFSLARE 247 + +L Sbjct: 248 QGRRHLSPNAGYPEAAMAGALGIT 271 >UniRef50_A8MCQ2 Cobalamin biosynthesis protein CbiB n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MCQ2_CALMQ Length = 320 Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%) Query: 3 LFTTLLVLIFERLFKLGEHW----QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLL 58 L T + LI + L+ + + H R+ GR G+ + VT +LL Sbjct: 6 LVTLTIALIMDYLYPMHKGLLYLIHPVHLTYGLAVRLYRPYSGRLWGVAVWFSSVTPILL 65 Query: 59 RALQGVLFNVPTLLVWLLIGLLCIGA--------GKVRLHYHAYLTAASRNDSHARATMA 110 ++ + + LLI L+ G + Y A + + +A Sbjct: 66 IYSAPIISIPLSNPILLLIILVYAGFIVKLSISLRLLLSLVEDYGKAINEGYLNEARGVA 125 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 +L + V +++ + + +PLF+L++ G G + Sbjct: 126 QQL-VRRNVWVIDIGHVNSAVVESLFESLVDG-FTSPLFYLLLFGPIGALLQRLSNT--- 180 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEK---ALPAWFASLGD 227 L P+ R+ V +++ P RL ++ L G L + Sbjct: 181 MDSALGYTDEPYRRIGWFSAKVDTAMNYAPARLTALLIVLAGFLMGRKPRLSTYLKYRSI 240 Query: 228 FHTSQYQVLTRLAQFSLAR-----------EPHVDKVETPKAAVSMAKKTSF 268 + A L + + A+ +AK T+ Sbjct: 241 TRSLNAGHPLAAASSVLGVRLEKINEYSIGNGELPDTISLLTAIKLAKLTAV 292 >UniRef50_A8RKD6 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A8RKD6_9CLOT Length = 332 Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 57/232 (24%), Gaps = 15/232 (6%) Query: 23 QLDHRLEAFFRRVKHFSLGRTLGMT--IIAMGVTFLLLRALQGVLFNV--PTLLVWLLIG 78 +L E R+ + + I ++ A L LL + Sbjct: 49 RLRKWTEGTGRKGQSRAGVILAVFMCIIWWCVPWAIVHGAEHLWLSGAWAVLLLAEGFLC 108 Query: 79 LLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLW 138 L + A + + + + + A + ++ Sbjct: 109 SLMLAARGLYTESMKVCRSLEEGSTEEARYNVS-MIVGRDTAALDEGGIARAAVETVAEN 167 Query: 139 INFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDW 198 + +AP ++ + G G + + + + + +L+ Sbjct: 168 ASDG-VIAPFLFMALLGPAGGTLYKAVNTMDSMVGY---KNDRYMYFGRCAARLDDLLNL 223 Query: 199 VPVRLAGVVYALIG------HGEKALPAWFASLGDFHTSQYQVLTRLAQFSL 244 P RL G++ L G A + + +L Sbjct: 224 APARLTGILMVLGAWVLPGMDGAHAFKVFLRDRKRHASPNSAHGEAACAGAL 275 >UniRef50_C3MDQ7 Cobalamin biosynthesis protein cobD n=25 Tax=Proteobacteria RepID=COBD_RHISN Length = 326 Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 22/269 (8%), Positives = 62/269 (23%), Gaps = 28/269 (10%) Query: 2 TLFTTLLVLIFERLFKLGEHWQ------------LDHRLEAFFRRVKHFSLGRTLGMTII 49 ++ LI +RL + + R + G+ I Sbjct: 5 IFLVLVVALIIDRLVGDPDWLWERLTHPVVFFGKAIGVFDEALNRGADGGWLKMRGVATI 64 Query: 50 AMGVTFL----LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHA 105 + + ++ + ++ + + + + H N Sbjct: 65 LILLAASILLGVVLNRLFDVLGAVGFILEAITVAVFLAQKSLADHVRRVADGLRSNGLEG 124 Query: 106 RATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGY 165 A + + + +++ + +AP W V G G + Sbjct: 125 GRE-AVSMIVGRDPKTLDEPGVCRAAIESLAENFSDG-VVAPALWYAVAGLPGLLAYKML 182 Query: 166 AFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEK-------AL 218 + + + + + RL+ + A ++ A+ Sbjct: 183 NTADSMIGHKSPKYLHFGW---ASARLDDLANLPAARLSVFLIAAGARFKRGVEAAKAAI 239 Query: 219 PAWFASLGDFHTSQYQVLTRLAQFSLARE 247 G + +L + Sbjct: 240 DVAKRDHGFHRSPNSGWPEAAMAGALDIQ 268 >UniRef50_C8S6M2 Cobalamin biosynthesis protein CobD n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S6M2_FERPL Length = 278 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 58/208 (27%), Gaps = 13/208 (6%) Query: 4 FTTLLVLIFERLFK-LGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLR-A 60 LL LIFE + E ++ F + G + + V F L Sbjct: 2 IELLLALIFEAIKSEPPEKVHPSVAFGKLMGKLYSNFPKTKFFGFVSLTIVVAFALFLST 61 Query: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 L G L+ + I + H + V Sbjct: 62 LPGYFPPPIKELLAAYLLYSSISIRSMVEHAR---NCLQNGRIV---REEVAKIVSRNVS 115 Query: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 D + +++ LAPL + + GT G + A + Sbjct: 116 NLDDSKLSSAVIESVAENFVDG-VLAPLIYYALFGTSGALVYRAVNVCDAMVGY---KDE 171 Query: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVY 208 + +L++VP R++ ++Y Sbjct: 172 KFRDFGYFSAKLDDLLNFVPSRISPLLY 199 >UniRef50_Q2JIW3 Cobalamin biosynthesis protein CobD n=3 Tax=Cyanobacteria RepID=Q2JIW3_SYNJB Length = 334 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 27/281 (9%), Positives = 70/281 (24%), Gaps = 32/281 (11%) Query: 26 HRLEAFFRRVKHFSLGRTLGMTIIAMGVTF------LLLRALQGVLFNVPTLLVWLLIGL 79 + + + + G ++ + + L A+ + +L+ + + Sbjct: 45 AWGQGYILKHCSTPRAQQWGGAVLTLTLVGGSYGIGWGLVAIGNAIHPWAGILMQVTLMA 104 Query: 80 LCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWI 139 C+G +R L + D + ++ Sbjct: 105 SCLGGRSLRFATLEVLDPLEKEDLPEARQRLSRY-VGRDTEHLTASEILRALIETVAENT 163 Query: 140 NFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWV 199 APLF+ +GG + + L + + P L + L W+ Sbjct: 164 PDGA-TAPLFYAFLGGAPLALAYKASSTLDSMVGY---RHPPFTHLGTVPARCEDGLTWL 219 Query: 200 PVRLAGVVYALIG-HGEKALPAWFASLGDFHTSQYQVLTRLAQ----------------- 241 P RL + AL+ + Sbjct: 220 PCRLTVLTLALLSRDPWGFWQRCRQDAQADPSPNSGWSEAAFAWRLQIQLGGTNFYQGIP 279 Query: 242 ---FSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTI 279 L + + ++ + ++ ++ ++ T+ Sbjct: 280 KVKPKLGIPARPLTPQVVRESLGLLRQVVWIWGSLMVGATL 320 >UniRef50_Q87D61 Transmembrane protein n=21 Tax=Bacteria RepID=Q87D61_XYLFT Length = 314 Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 91/273 (33%), Gaps = 21/273 (7%) Query: 2 TLFTTLLVLIFERLFK-----LGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFL 56 T+ ++ L L L L R + + L +T +A+ Sbjct: 21 TVIAVIVALALGHLIPVQVAALRSFDWFGRWLAWIGRLPQTYDLWQTSYGLWLALAPLLF 80 Query: 57 LLRALQG----VLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 + LQ V + +LL + + G + A + A ND+ AR + Sbjct: 81 GVMMLQWWLDGVWHGLFSLLFGVAVVSWTWGPRDLDRDVEAVIDA---NDASARHLAVKK 137 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 L G + NAL + ++ G +G V A + Sbjct: 138 LQAAGGSLYEDIPSLVEAVVLNALRRWLALLFWF-----LLLGPFGAVLYRL--TALAVE 190 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 L+ Y +P +R L +++W +L + AL+G+ + AW + G+ Sbjct: 191 SRLSAYLSPANRRG--ASRFLSMMEWPVAQLMALSMALVGNFDTVFRAWREAGGNRFNFG 248 Query: 233 YQVLTRLAQFSLAREPHVDKVETPKAAVSMAKK 265 L +A+ S+ E + + + + + Sbjct: 249 LAFLGDVARASVRGEVREELDDYDNSGLVSVWR 281 >UniRef50_A0B5W6 Probable cobalamin biosynthesis protein cobD n=1 Tax=Methanosaeta thermophila PT RepID=COBD_METTP Length = 316 Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 30/298 (10%), Positives = 77/298 (25%), Gaps = 35/298 (11%) Query: 3 LFTTLLVLIFERLFK-LGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRAL 61 +L L+ + + + R++ R + II++ V + A Sbjct: 8 FSVLILALLIDIVLGEPPAALHPVVIIGTAVDRLRRMMPRRKISGMIISVLVISGAVLAG 67 Query: 62 QGVLFN---------------VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHAR 106 ++ + L++ + + + D A Sbjct: 68 FALIRIAYATGSLAGSSEMGDILALIISSYLLKSTFAFKSLIMTSREIGN-LIDEDLDAA 126 Query: 107 ATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG--GTWGPVTLMG 164 + L + + +++ +PLF+ ++ G + Sbjct: 127 KHLLPAL-VSRNPLNLTHAQARSAVIESLSENYVDTIV-SPLFYYVLFSCAGLGVEAALA 184 Query: 165 YAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG--HGEKALPAWF 222 + + L + + +L+W+P RL+ + + L A Sbjct: 185 FKAVSTMDSMLGYKSDDLREIGYVPARLDDILNWIPARLSLPLIMIASPRKSMDILKACM 244 Query: 223 ASLGDFHTSQYQVLTRLAQFSLAR------------EPHVDKVETPKAAVSMAKKTSF 268 + A +L E + E +A+S+ + Sbjct: 245 RYHSVTPSPNSGWPMAAAAGALGTRMAKPGVYTILDEGRDPESEDVSSAISLIGRAMV 302 >UniRef50_P74475 Cobalamin biosynthesis protein cobD n=9 Tax=Cyanobacteria RepID=COBD_SYNY3 Length = 342 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 74/267 (27%), Gaps = 24/267 (8%) Query: 3 LFTTLL---VLIFERLFKLGEHWQL-------------DHRLEAFFRRVKHFSLGRTLGM 46 L ++ + + L + W+ + + G LG+ Sbjct: 11 LIAVIILGGSALLDFLLGDPKSWRHPVEFIGSVINFASQLIIRKVNDKNSRRLWGIFLGL 70 Query: 47 TIIAM-GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHA 105 II G L+ L + V +++ ++ C + + + D Sbjct: 71 KIIISSGFLAWLIVYLAEKVSPVLAVIIQIIGVASCFAGHSLAQAAQSVIEPLKAGDLPT 130 Query: 106 RATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTW---GPV-T 161 L + + +++ +PLF+ ++G + GP Sbjct: 131 ARQKLA-LFVGRDTNNLSEREILRATVESVAENTVDG-VTSPLFYALLGILFPFVGPWPL 188 Query: 162 LMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYA-LIGHGEKALPA 220 + Y + + P+ L + L W+P RL + A L G ++ Sbjct: 189 AIAYKAASTLDSMVGYKREPYTDLGWFSARLEDYLTWLPCRLTVFMLAILSGKPKQTWAI 248 Query: 221 WFASLGDFHTSQYQVLTRLAQFSLARE 247 + + L + Sbjct: 249 VRRDGPLDPSPNSGWSEAIYAAILGIQ 275 >UniRef50_A5UQT3 Adenosylcobinamide-phosphate synthase n=8 Tax=Bacteria RepID=A5UQT3_ROSS1 Length = 334 Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 59/254 (23%), Gaps = 19/254 (7%) Query: 5 TTLLVLIFERLFKLG-EHWQLDHRLEAFFRRVKHFSLGR-----TLGMTIIAMGVTFLLL 58 T L+ LI + L W + + + F+ G + G Sbjct: 13 TLLIALIADALLGDPPNAWHPVALMGRWMHLGERFAPQGATARLLWGGMWLTAGAAATGS 72 Query: 59 RALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHG 118 V L + + TA R D + G + Sbjct: 73 VVALLPDHPVVR----GLAASTLMAYRGLDRAVGEVQTALERGDLAEARRLLGWHLVSRP 128 Query: 119 VPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARY 178 + +++ ++ AP L+VGG A Sbjct: 129 TADLRADEVAGAAIESLAENLSDSLV-APALALLVGGLPAIAVYRLSNTADAM---WGYR 184 Query: 179 QTPHHRLQSGIDAVLHVLDWVPVRLAGVVY-----ALIGHGEKALPAWFASLGDFHTSQY 233 + L + L+ +P RL + + G G A G + Sbjct: 185 NERYEYLGKTAARLDDALNLLPARLTAALIAAAAQIVCGRGMIAWQIARRDAGRTASPNA 244 Query: 234 QVLTRLAQFSLARE 247 +L Sbjct: 245 GWPMAAMAGALDTT 258 >UniRef50_B1I5R1 Cobalamin biosynthesis protein CobD n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5R1_DESAP Length = 319 Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 62/266 (23%), Gaps = 25/266 (9%) Query: 1 MTLFT-----TLLVLIFERLFKLGEHWQLDHRLEAFF----------RRVKHFSLGRTLG 45 M L ++ +RL RL + +S Sbjct: 1 MEFLAYRAGVILAAVVLDRLLGDPPQLPHPVRLIGYLIASGESIRRLPLPVRWSGTLLAM 60 Query: 46 MTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHA 105 I G LL L L V L+ L + + A R D Sbjct: 61 GVIAVTGAAAWLLVKLGYAAGFWWGLAVEALLVYLAVAPHSLAGEALAVDGYLQRGDLPG 120 Query: 106 RATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGY 165 + + + ++ L P+F+ ++ G G Sbjct: 121 ARQRLA-MIVGRDTAGLDEREVRRAAVETVGENTVDA-VLCPVFYALLFGAAGAWVYKAV 178 Query: 166 AFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVY----ALIG-HGEKALPA 220 + L + + P+ + +VP RLA L G A Sbjct: 179 STLDSMIGY---RHGPYRDFGRAAARLDDFAAFVPARLALFFVPPAALLSGLSARDAWRV 235 Query: 221 WFASLGDFHTSQYQVLTRLAQFSLAR 246 + + L +L Sbjct: 236 GWRDRLAHPSPNAGHGEALFAGALNA 261 >UniRef50_B9JXA3 Cobalamin biosynthesis protein CobD n=2 Tax=Rhizobiaceae RepID=B9JXA3_AGRVS Length = 323 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 26/231 (11%), Positives = 56/231 (24%), Gaps = 17/231 (7%) Query: 28 LEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVL-----FNVPTLLVWLLIGLLCI 82 + R R G + + + L G+ L+ + + + + Sbjct: 43 FDRLLNRPALADPLRKAGGVLTIVLLLMASLGVGYGLHRLFAALGFIGFLLEIAVTAVFL 102 Query: 83 GAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFR 142 + H A A + + + L++ Sbjct: 103 AQKSLLDHVKAVADGLLHEGLAGGRR-AVSMIVGRDPDVLDEAGVARAALESLSENFADG 161 Query: 143 FYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVR 202 +AP FW V G G + + + + + + + +W R Sbjct: 162 -VVAPAFWYGVLGLPGLLAYKMLNTADSM---IGHKSERYVQFGWASARLDDLANWPAAR 217 Query: 203 LAGVVYALIGHG-------EKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 LAG++ ++ A G + A L Sbjct: 218 LAGLLIVCAAGTGEGIATAKRCFTVMMADHGLHRSPNSGWPEAAAAGGLDV 268 >UniRef50_B6BH68 Cobalamin biosynthesis protein CobD n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BH68_9PROT Length = 301 Score = 95.0 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 62/174 (35%), Gaps = 15/174 (8%) Query: 69 PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREY 128 +++ I + + + L + ++ + A+ + V + Y Sbjct: 78 VNIIISSFIASMFLAHRMLYDSVKDVLVSQNKQEVIAK-------LVSRDVEQMSESDIY 130 Query: 129 LRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSG 188 ++ ++ +APLF+L++ G G + + + + + Sbjct: 131 KASIETYAENLSDG-VIAPLFYLLLFGLPGIIIYKAINTMDSMVGYRNDKYENY---GKV 186 Query: 189 IDAVLHVLDWVPVRLAGVVYALIGHGE-KALPAWFASLGDFHTSQYQ-VLTRLA 240 + + +++P R+ V+ L+ + K + +++ + + +T +A Sbjct: 187 AAKLDDIANYIPSRVTAVLIMLL--FKQKDIFSFYENGAKHDSPNAGHPITAMA 238 >UniRef50_UPI000038E15E cobalamin biosynthesis protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E15E Length = 318 Score = 95.0 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 25/258 (9%), Positives = 67/258 (25%), Gaps = 17/258 (6%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRL-----EAFFRRVKHFSLGRTLGMTIIAM--GVTF 55 F+ L ++ F + + G ++II + Sbjct: 13 FFSILFDVVIGEPPNRIHPVVFIGITISKLKTRFISKNNKIAAGCFFLISIILINTVPLV 72 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLL---CIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 +L L + +L ++ + H + + A ++D + Sbjct: 73 AVLYLLYIAKNTILLILFAVIYIYFLKSTFSIRGMGTHVNRIINALEKSDLDSAKKYTS- 131 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 + + + E+ ++ YL P+F+ G G + Sbjct: 132 MVVRRDTSSMDSEKIASAAVETIAEGFVDG-YLTPMFFYAFFGIAGAMVARVINT---MD 187 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTS- 231 +A H+ + +++ R+A ++++ + + + S Sbjct: 188 SNIAYRDNTHYEFGRCTAIGDSITNFITSRMAPFMFSISA-FLLGIKYAKTRIINTTDSL 246 Query: 232 QYQVLTRLAQFSLAREPH 249 L Sbjct: 247 NAGYSIGAMAKVLGIRLE 264 >UniRef50_C1A5M4 Cobalamin biosynthesis protein CobD n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5M4_GEMAT Length = 330 Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 46/191 (24%), Gaps = 9/191 (4%) Query: 64 VLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGC 123 + + + V ++ + + A R+D + + A Sbjct: 99 LPSTLGRISVEGVLLKPALAVRSLLRAADVVRVALERHDLDQARHLLSWHLVSRNTDALS 158 Query: 124 DEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHH 183 + + + ++ + PL +GG A + Sbjct: 159 ADEVAGAAIASLAENLSDS-VVGPLMAYRLGGLPAAYAYRFVNTADAMLGYRTPELE--- 214 Query: 184 RLQSGIDAVLHVLDWVPVRLAGVVYAL-----IGHGEKALPAWFASLGDFHTSQYQVLTR 238 VL+ +P R++ + AL + KAL + Sbjct: 215 WFGKSAARSDDVLNLLPARVSAPLLALAAPCAMASPWKALRCGIRDASRTPSPNGGWPMA 274 Query: 239 LAQFSLAREPH 249 +L Sbjct: 275 TMAGALGIRLE 285 >UniRef50_B0BZ20 Cobalamin biosynthesis protein CbiB n=19 Tax=Cyanobacteria RepID=B0BZ20_ACAM1 Length = 339 Score = 93.9 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 69/263 (26%), Gaps = 18/263 (6%) Query: 1 MTLF-TTLLVLIFERLFKLGEHWQLDHRL--------EAFFRRVKHFSLGRTLGMTIIAM 51 M L +L + Q+ + ++ + + Sbjct: 17 MVLISAAVLDFAIGDPWWCPHPVQMMGWIVQRYTKGALRWWNEPWQLRIAGIHLTIALVC 76 Query: 52 GVTFLLLRALQGV--LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 V+ G+ +L + +++ C + L R D + Sbjct: 77 SVSLGSWLLFYGLDRWAWPVSLGLEVVLLASCFAGRSLHDAAVDVLKPLERADLTVARSR 136 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTW---GPV-TLMGY 165 E++ LR L + +APLF+ +VG GPV + Y Sbjct: 137 LRRYVGRDTDT--LAEQDILRALLETVAENATDGVMAPLFYALVGLAIPGVGPVPVALFY 194 Query: 166 AFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVY-ALIGHGEKALPAWFAS 224 + + P+ L + VL W P RL + L G + + Sbjct: 195 KAVSTLDSMIGYRTAPYTDLGWFSARLDDVLTWFPCRLMVLTVGLLSGKLKSVWVIGWRD 254 Query: 225 LGDFHTSQYQVLTRLAQFSLARE 247 + L + Sbjct: 255 ARKDPSPNSGWSECAYAAILGVQ 277 >UniRef50_Q9RZV1 Cobalamin biosynthesis protein CobD, putative n=1 Tax=Deinococcus radiodurans RepID=Q9RZV1_DEIRA Length = 300 Score = 93.5 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 19/210 (9%), Positives = 49/210 (23%), Gaps = 17/210 (8%) Query: 69 PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREY 128 V + + + A + D + + Sbjct: 74 LPWWVQGALLKPLLARKALFDAVAEVAGALEQGDVPEARRLLAWHLVSRDTSQLTAAEVA 133 Query: 129 LRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSG 188 +++ ++ +APL GG A + + + Sbjct: 134 GAAIESLAENLSDS-VVAPLLAYRAGGLPLAAAYRLTNTADAMWGYRTPELEDAGKAAAK 192 Query: 189 IDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE- 247 D + + P RL + ++ ++ W + + +L Sbjct: 193 ADDLF---NLAPARLTALCTLMVSG-SQSWRVWVRDRRNPASPNAGHPMSAFAGALGVRL 248 Query: 248 -----------PHVDKVETPKAAVSMAKKT 266 E A+++A++T Sbjct: 249 DKRGVYVLNAAGAAPGPEHLAPALALARRT 278 >UniRef50_C8QWR6 Cobalamin biosynthesis protein CobD n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWR6_9DELT Length = 322 Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 66/267 (24%), Gaps = 26/267 (9%) Query: 2 TLFTTLL--VLIFERLFKLGEHWQ-----LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVT 54 T L+ + L + + ++ R G+ + M Sbjct: 3 TFPPLLITLAFCIDALVGDPPRLPHPVRLIGAVIARLEALLRRLGNLRLAGVLLAVMVPL 62 Query: 55 FLLLRALQGVLF-----NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATM 109 L LL LL+ L R + D + Sbjct: 63 GAGAAGLALTYLAAGRGGWAGLLAALLVLYLTAATISARELLLRVREVLACEDLPRAREL 122 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLR 169 + A + L+ + APLF+L +GG + L Sbjct: 123 LSH-IVGRDTAALDADGVRRAALETLAENASDGIV-APLFYLGLGGLPLALAYKAVNTLD 180 Query: 170 AWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALI---------GHGEKALPA 220 + + + L + + +++P RL G++ + G A Sbjct: 181 SMVGY---KNEKYAELGRASAKLDDLANYLPARLTGLLIIVAVWLLDHGRPGRAAAAWRI 237 Query: 221 WFASLGDFHTSQYQVLTRLAQFSLARE 247 + + + +L + Sbjct: 238 MRRDGRNHASPNSGIPEAALAGALGIQ 264 >UniRef50_B2UM56 Cobalamin biosynthesis protein CobD n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM56_AKKM8 Length = 330 Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 19/207 (9%), Positives = 49/207 (23%), Gaps = 19/207 (9%) Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L + + +L+ +C+ + H A ++ + + Sbjct: 68 CAALFLPFSLLPSPWAPWIPSVLVIYICMAPRSLAEHARKVENALRSGNAGEAR-HSVSM 126 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL--------IVGGTWGPVTLMGY 165 + +++ + + LFW G + + Sbjct: 127 IVGRDTERMDVYGIARAAIESVAENLTDG-VFSTLFWASAGCLAGGASGAASAALAHRVF 185 Query: 166 AFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRL------AGVVYALIGHGEKALP 219 L A + + + L+++P RL + +AL Sbjct: 186 NILDAM---WGKKNDRYRHFGTFAARTDDALNFIPARLILPCISFSALMVEGTSARRALT 242 Query: 220 AWFASLGDFHTSQYQVLTRLAQFSLAR 246 +A + +L Sbjct: 243 MGWAFRNAHASPNSAWSEAAFAGALGL 269 >UniRef50_B2IE17 Cobalamin biosynthesis protein CobD n=16 Tax=Alphaproteobacteria RepID=B2IE17_BEII9 Length = 337 Score = 92.3 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 58/237 (24%), Gaps = 19/237 (8%) Query: 23 QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWL----LIG 78 D L L +T + V + +L ++ L Sbjct: 47 WTDRNFNRLHDSFATRRLAGFLILTALLFFVFLVASFVQDLLLHGGMPFVIGFPLLALCA 106 Query: 79 LLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLW 138 + + H A A + N+ A + V + +++ Sbjct: 107 SSLLAQRSLHDHVQAVGDALA-NEGIEAGRSAVARIVGRDVTQLDEAGILRAAVESLAEN 165 Query: 139 INFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDW 198 + AP FWL +GG G + + H + V++W Sbjct: 166 FSDGIV-APAFWLALGGLPGLCLYKTINTADSM---IGHRTERHEAFGFSAAKLDDVVNW 221 Query: 199 VPVRLAGV----VYALIG------HGEKALPAWFASLGDFHTSQYQVLTRLAQFSLA 245 RLA + AL+ +A + +L Sbjct: 222 PAARLAALWLCGAAALLSYTSPELSARRAFAITRRDARGHPSPNAGWPEAAMAGALG 278 >UniRef50_A9GM39 Cobalamin biosynthesis protein cobD n=2 Tax=Bacteria RepID=COBD_SORC5 Length = 314 Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 47/193 (24%), Gaps = 11/193 (5%) Query: 81 CIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWIN 140 +R + A D L + +++ + Sbjct: 93 TFALRALRDAAYGVRDALEAGDVTGARGALRSLC-SRDPSELDEPALVAASVESVAENAS 151 Query: 141 FRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVP 200 ++APLF+ + G G + L A + R + L + L++VP Sbjct: 152 DS-FVAPLFYFALFGLPGALFYRAVNTLDAMVGYHGR----YEYLGKASARLDDALNFVP 206 Query: 201 VRLAGVVYALI-----GHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVET 255 RL ++ + L G + L E Sbjct: 207 ARLTALLLLAAGWLRGADARRGLAVLLRDGGLTESPNAGRPMAAMAGLLRVELEKRGHYR 266 Query: 256 PKAAVSMAKKTSF 268 V ++ Sbjct: 267 LGDPVEPLRRGLI 279 >UniRef50_Q3ZWV9 Cobalamin biosynthesis protein n=3 Tax=Dehalococcoides RepID=Q3ZWV9_DEHSC Length = 318 Score = 90.4 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 71/267 (26%), Gaps = 25/267 (9%) Query: 4 FTTLLVLIFER-LFKLGEHWQLDHRLEAFFR-------RVKHFSLGRTLGMTIIAMGVTF 55 +L ++++ L + L + +++ +L GM + Sbjct: 6 LILVLAVLWDLALAEPPAAIHLTVWIGRVISVVEKTGLKMRSHALQYIFGMLASLFLIAL 65 Query: 56 LLLRALQGVLFN-----VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND--SHARAT 108 + + + V ++ L+ D + Sbjct: 66 FGWLSYWLLAYLGGISFVLYIIAAFLLLKPTFCFKFNARMSLLVEKYLKGGDYRIESADK 125 Query: 109 MAGELTMIHGVPAGCD-EREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAF 167 L G + + +L F +APLF+ ++ G G V Sbjct: 126 EIRYLLTTVEREKGDEFAPPMISSTIRSLSENASDFLVAPLFYFLILGVPGAVAYRVSNT 185 Query: 168 LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGE--KALPAWFASL 225 L + L + +L+++P RL G+++ L AW +L Sbjct: 186 LDGMLGHRGE----YEYLGKFAACLDDILNYIPARLTGLMFVLSAFVSGLDGKNAWKMAL 241 Query: 226 GDFH---TSQYQVLTRLAQFSLAREPH 249 D + +L Sbjct: 242 RDQSKTESPNAGWPMAATAGALGVRLE 268 >UniRef50_Q729W0 Cobalamin biosynthesis protein CobD, putative n=3 Tax=Desulfovibrio vulgaris RepID=Q729W0_DESVH Length = 320 Score = 90.0 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 62/245 (25%), Gaps = 16/245 (6%) Query: 8 LVLIFERLFKLGEHWQ-----LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ 62 + + + L + H L R + R G+ + V + Sbjct: 13 IAFVLDMLAGDPRWLPHPVRAIGHLLGPLERLGRALGATRPAGVVCTVLAVLCAGVVVTL 72 Query: 63 GVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAG 122 V LV L + + G + A L A + + A Sbjct: 73 AGALPVVGALVSLWLAYAGLALGCLLREGRAALHAVEHGSLEEGRAALA-MLVSRDTSAL 131 Query: 123 CDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPH 182 + + N ++AP WL+ GPV L Y + Sbjct: 132 DRDGLRRALAETLAENFNDG-FVAPFLWLV---AGGPVGLWCYKTVSTMDSMWGYRTERW 187 Query: 183 HRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEK------ALPAWFASLGDFHTSQYQVL 236 RL + VL WVP R V+ + LP + + Sbjct: 188 ERLGWACARLDDVLAWVPARCCVVLLWVTAPFAGVPGQWPGLPRVASDARRMESPNAGWP 247 Query: 237 TRLAQ 241 A Sbjct: 248 MAAAA 252 >UniRef50_C7M3A5 Cobalamin biosynthesis protein CobD n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M3A5_ACIFD Length = 299 Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 58/244 (23%), Gaps = 14/244 (5%) Query: 4 FTTLLVLIFERLFKLG-EHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ 62 + L + + + W ++ + + G + + Sbjct: 7 LELAVALGLDAMLGDPPDRWHPVAWFGRAASVLERRYWRDDRRVGALVAGALVVGGTLVG 66 Query: 63 GVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAG 122 V+ VP + + +G +R A D G + Sbjct: 67 AVIDRVPGGALASA--WVALGGAGLRRRALDVARALDDGDLEQARAWLG-WLVGRDRDGL 123 Query: 123 CDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPH 182 +++ L P+ W + G+ G + L L A Sbjct: 124 DATEIARATIESVAENTVDA-VLGPMVWHVALGSMGSIALRAVNTLDAMV---GHRNARF 179 Query: 183 HRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQF 242 R + ++ P RL + A H + + + L Sbjct: 180 ERFGWFAARLDDLVMAPPRRL-AIALAAPSH-----RRLLPAARSHPSPNAGPMEALVAA 233 Query: 243 SLAR 246 ++ Sbjct: 234 AVGV 237 >UniRef50_Q0FDG7 Cobalamin biosynthesis protein CobD n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FDG7_9RHOB Length = 308 Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 26/270 (9%), Positives = 73/270 (27%), Gaps = 27/270 (10%) Query: 28 LEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKV 87 L ++F +F ++ + Q + L+ LLI + + + Sbjct: 37 LISWFDNNFNFGSALKFKGIFAIFSLSIMACLIGQFIHLLPDYGLIELLITTILLAHNSL 96 Query: 88 RLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAP 147 H L + + + A + + +++A + +AP Sbjct: 97 VKHVKDVLIGLNNSLNEG--RNAVACIVGRQTKNLDESNVSRAAVESAAENFSDA-VIAP 153 Query: 148 LFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVV 207 +FW ++ G G + + + G +++W+P R+ G + Sbjct: 154 IFWYLLLGLPGLFLYKMTNTADSMIGYKSEKYLL---FGFGAAKFDDLMNWIPSRICGTL 210 Query: 208 YALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR--------------------- 246 + + L Sbjct: 211 MCAAYLSKSNFLIMLKDAKLHASPNAGWPEAAMASILNVALAGPRSYHGKLTHYEFINSS 270 Query: 247 EPHVDKVETPKAAVSMAKKTSFVVVVVIAL 276 H A+ + ++ ++++++++ Sbjct: 271 GRHDMDRTDINDALKVLNRSWLILIIIVSI 300 >UniRef50_UPI0001C336B8 adenosylcobinamide-phosphate synthase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C336B8 Length = 327 Score = 89.2 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 29/252 (11%), Positives = 74/252 (29%), Gaps = 21/252 (8%) Query: 2 TLFTTLLVLIFERLFKLGEHWQL-------------DHRLEAFFRRVKHFSLGRTLGMTI 48 ++ ++ + + L + + L++F +R G LG+ + Sbjct: 6 SIIILIVASLIDYLVSDPSKYLHPVQVMGWLIVKCSNFLLKSFKKRFMRRCTGIVLGLLL 65 Query: 49 IAMGVTF-LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARA 107 + F ++ ++ + +++ + C +RL + +R + Sbjct: 66 VVGSGVFGWMIGLIKYHFSPLIGVVIESIFLASCFAGRSLRLAAYDVFIPLNRKKINLAR 125 Query: 108 TMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTW----GPVTLM 163 + ++ R + + + +APLF+ I+G + Sbjct: 126 IKLSQYVGRSTT--HLSQKNIWRTVLETISENSIDGVMAPLFYAIIGALLPHTNSLAFAL 183 Query: 164 GYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYA-LIGHGEKALPAWF 222 Y + + P + + +L W+P RL + A L G Sbjct: 184 AYKASSTLDSTIGYKKEPFADIGWFSANLEDILTWIPCRLGVLTLAILAGRPYYVFSVCN 243 Query: 223 ASLGDFHTSQYQ 234 + Sbjct: 244 RDGTKDISPNSG 255 >UniRef50_Q1NTQ0 Cobalamin biosynthesis protein CbiB n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NTQ0_9DELT Length = 373 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 18/227 (7%) Query: 4 FTTLLVLIFERLFKLGEHW-QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQ 62 F + + + L R++ +A + L+ Sbjct: 6 FLIIAAFLLDAAIGDPPRLPHPVRLLGWLINRLEKVLRLVLARRLRLAGIILTGLVVGGS 65 Query: 63 GVLF------------NVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMA 110 + P L ++ L R D + Sbjct: 66 WLAGAAICQLAAATTPGWPAWLASGVLIYLAATTLAGRELLQRVQEVLHCRDLTEARRLV 125 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 G+L + + L+ + APLF+L +GG + L + Sbjct: 126 GQL-VGRDTAQLDADGVRRAALETLAENASDGIV-APLFYLALGGLPLALAYKAVNTLDS 183 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKA 217 + + L + + +++P RL GV+ + Sbjct: 184 MVGY---RHEKYRELGWAAARLDDLANYLPARLTGVLIVIAAGLVNG 227 >UniRef50_Q2WAM8 Cobalamin biosynthesis protein CobD/CbiB n=7 Tax=Alphaproteobacteria RepID=Q2WAM8_MAGSA Length = 331 Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 20/193 (10%), Positives = 51/193 (26%), Gaps = 11/193 (5%) Query: 14 RLFKLGEHW--QLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFN---- 67 R+ ++ L+ R R ++A+G+ L + F Sbjct: 36 RILPHPVVLIGRVIGLLDRRLNRPDRSEADRRRRGILVALGLGLGALGLGAIMAFLARTL 95 Query: 68 VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 L + + + + H + A + A + + Sbjct: 96 PHAWLFEVFVAATLLAQRSLFEHVYDVAMALKDSGLE-AGRYAVSRIVGRDPQSLDSHGV 154 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 +++ +AP+FW + G G + + + + Sbjct: 155 VRAAIESLAENFGDG-VVAPVFWYAILGLPGLLLYKTINTADSM---IGHRNDKYRAFGM 210 Query: 188 GIDAVLHVLDWVP 200 + +L+ +P Sbjct: 211 ASARLDDLLNLIP 223 >UniRef50_Q8TV77 Cobalamin biosynthesis protein CobD/CbiB n=1 Tax=Methanopyrus kandleri RepID=Q8TV77_METKA Length = 298 Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 19/185 (10%), Positives = 45/185 (24%), Gaps = 8/185 (4%) Query: 15 LFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNV--PTLL 72 L + V+ + + + L GV + + ++ Sbjct: 19 LGDPPNRFHPVAWCGRVMELVEKRVRRGRVLDVVWGGLTLAVGCGFLLGVCYPLHYIPMV 78 Query: 73 VWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLREL 132 L+ +CI + H + A + V + Sbjct: 79 GDALVLWVCISVRGLVEHLLPVERELREGNLDGARQ-AVRWLVSRDVSRLNGAEVASAAV 137 Query: 133 QNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAV 192 ++ + + PL+W + G G V A + + + Sbjct: 138 ESCFENLLDS-VVGPLWWYYLLGWPGAVMYRATNVADAMFGYRGE----YEMFGKIPARL 192 Query: 193 LHVLD 197 +L+ Sbjct: 193 DDLLN 197 >UniRef50_B8DL86 Cobalamin biosynthesis protein CbiB n=2 Tax=Desulfovibrio RepID=B8DL86_DESVM Length = 374 Score = 86.5 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 45/176 (25%), Gaps = 6/176 (3%) Query: 32 FRRVKHFSLGRTLGMTIIAMGVTFLLL-RALQGVLFNVPTLLVWLLIGLLCIGAGKVRLH 90 R L + +A GV + VL L + + G + Sbjct: 61 GERPAALRRAGVLAVMAVAGGVALAVWGLVRLPVLAPWLGALAAVYFAWAGLALGSLLRE 120 Query: 91 YHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFW 150 L A A + + + N ++ PLFW Sbjct: 121 GRRTLHAIEHGTLDEARV-AVSMLVSRDTAQLDRPDLRRALAETLAENFNDG-FVGPLFW 178 Query: 151 LIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 L++GG + L + VL W+P RL+ + Sbjct: 179 LLLGGPAALWGYKAVST---MDSMWGYRTDRWRDLGRACARLDDVLAWLPARLSAL 231 >UniRef50_A1TME6 Adenosylcobinamide-phosphate synthase n=8 Tax=cellular organisms RepID=A1TME6_ACIAC Length = 342 Score = 85.8 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 5/164 (3%) Query: 84 AGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRF 143 +R A A +++ A L + V A + +++ +N Sbjct: 116 WRMLRDEVVAVEEALAQS-LEAGRERLSRL-VSRDVHALQAVQVRESAIESLAENLNDS- 172 Query: 144 YLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHH-RLQSGIDAVLHVLDWVPVR 202 +APLFW + G G A + + VL WVP R Sbjct: 173 VVAPLFWFALLGLPGAALYRFANTADAMWGYPGMRGGRYWQWAGKWAARADDVLSWVPAR 232 Query: 203 LAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 + V+ AL + + +L Sbjct: 233 ITAVLLALSARRGRWAAVAR-QARRTPSPNSGWPMAAMALALDV 275 >UniRef50_A9BVS9 Cobalamin biosynthesis protein CobD n=10 Tax=Proteobacteria RepID=A9BVS9_DELAS Length = 364 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 54/210 (25%), Gaps = 24/210 (11%) Query: 12 FERLFKLGEHWQL-----DHRLEAFFRRVKHF-----SLGRTLGMTIIAMGVTFLLLRAL 61 +RL+ W L A RR+ R + + L Sbjct: 53 IDRLWGEPPVWIHPVVAMGRLLAAVGRRLAPREEHVRDWPRFALGAVAWCLLALLFFTIY 112 Query: 62 QGVLFNVPTLLVWLLIGLL------CIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 + + +P + WL +L + +R A A + S + Sbjct: 113 AFIQWLLPPMPWWLGALVLGVLLKPLLSWRMLRDEVLAVEAALQQ--SLPAGRERLTWLV 170 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW- 174 + ++ ++ LAPLFW V G G A + Sbjct: 171 SRDTARLDAGQVRESAIETLAENLSDS-VLAPLFWFAVAGLPGAALYRLANTADAMWGYP 229 Query: 175 ----LARYQTPHHRLQSGIDAVLHVLDWVP 200 + +L+W+P Sbjct: 230 GWRGQGDDRRHWQWAGKWTARADDLLNWIP 259 >UniRef50_A3MWE1 Adenosylcobinamide-phosphate synthase n=1 Tax=Pyrobaculum calidifontis JCM 11548 RepID=A3MWE1_PYRCJ Length = 315 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 58/225 (25%), Gaps = 14/225 (6%) Query: 34 RVKHFSLGRTLGMTIIAMG----VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRL 89 R+ R G+ + +T + L I + Sbjct: 41 RLAKRRRDRLWGIAVWLAVEAAHLTPFAALLALAAFHPLAWALAAAATLKFSISYKLLVD 100 Query: 90 HYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLF 149 A R D + V + + L++ + + +P+F Sbjct: 101 ICRRVQKALERGDLAEARRWVSH-IVRRDVSSLEEAGVASAALESLAESLVDG-FTSPVF 158 Query: 150 WLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYA 209 + ++ G G + L L + VL+++P RL ++ A Sbjct: 159 YAVLLGPLGALGQRVANTLD---GALGYKTPEFKDVGWVSARADTVLNFIPARLTALLIA 215 Query: 210 LI-----GHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPH 249 L+ G KAL W + +L Sbjct: 216 LLAPIAGGDVRKALAVWLRWHNATESLNAGHPMSAMAGALGVRLE 260 >UniRef50_C6HZY1 Cobalamin biosynthesis protein CobD/CbiB n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZY1_9BACT Length = 335 Score = 83.8 bits (206), Expect = 5e-15, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 70/247 (28%), Gaps = 24/247 (9%) Query: 11 IFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPT 70 + R+ E ++ R G G ++LLLR ++ + Sbjct: 35 LMGRMAGALESLIRSRIPSSYHRLGGLVLPLVLCG---FFGGGSWLLLRVVRQLAGEGAW 91 Query: 71 LLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLR 130 L+ + + + A + H A L + + D Sbjct: 92 ALLSVFWAVQLLAARSLFDHVSAVLLPLMAGERDEARRALAR-IVGRDTEDLSDSGISRG 150 Query: 131 ELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGID 190 L++ N +APLF+L++GG + + L + + + RL Sbjct: 151 ALESLWENTNDA-VVAPLFFLLLGGVPLLMVYKAASTLDSMVGY---RNERYLRLGWASA 206 Query: 191 AVLHVLDWVPVRLAGVVYALI---------------GHGEKALPAWFASLGDFHTSQYQV 235 + +L ++P RL + L+ G G AW + Sbjct: 207 RLDDILAFIPARLTFFLMFLVLPPFLPDGGPRCHFWGKGSCLARAWR-FRRAHPSPNSGY 265 Query: 236 LTRLAQF 242 Sbjct: 266 PMAAFAA 272 >UniRef50_A8I5C2 Cobalamin biosynthesis protein n=10 Tax=Rhizobiales RepID=A8I5C2_AZOC5 Length = 324 Score = 83.5 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 61/217 (28%), Gaps = 12/217 (5%) Query: 36 KHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYL 95 G + ++A + L+ F + +L +L +L I + + A Sbjct: 53 ARKRNGVLTVIVLLACAMLPALMLEAFLRQFALGVVLAGILGSVL-IAQHSLYTYVAAVA 111 Query: 96 TAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGG 155 TA + A A + +++ + AP FW++VGG Sbjct: 112 TALEKGGL-AAGRRAVSHIVGRDPEQLDVAGVTRGAIESLAENFSDGIV-APTFWMLVGG 169 Query: 156 TWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG- 214 G + + + + +++ RL+G++ L Sbjct: 170 LAGGAGYKALNTADSM---IGHRNPRYEDFGWAAARLDDLVNLPASRLSGLLIVLAAGLL 226 Query: 215 -----EKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 ++A A + +L Sbjct: 227 PGCSPKEAWRAMLRDAPHHRSPNAGWPEAAMAGALGI 263 >UniRef50_B5INX6 Cobalamin biosynthesis protein CobD n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5INX6_9CHRO Length = 345 Score = 83.5 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 62/272 (22%), Gaps = 31/272 (11%) Query: 5 TTLLVLIFERLFKLGEHW----QLDHRLE---------AFFRRVKHFSLGRTLGMTIIAM 51 + +RL W Q+ L R + Sbjct: 14 AVIAAAALDRLLGDPRRWLHPVQVMGWLIGRLRQGAELWAGDRPGRLRWAGIAITLAVVG 73 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTA--ASRNDSHARATM 109 +V V ++ + + A L + + Sbjct: 74 LSGASGWLLETWASGSVLGQAVLVIALASALAGRSLEQEVQAVLALSEVEQRNLEPARRR 133 Query: 110 AGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG--------GTWGPV- 160 + + A APLFW++VG G GP+ Sbjct: 134 LS-WIVGRDTAELDRRGILRALAETASENAVDG-LFAPLFWMLVGAALGGLVPGAPGPLC 191 Query: 161 TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG--HGEKAL 218 + L + L + + +L W+P RL + L G +A Sbjct: 192 LAWTFKAASTLDSMLGYRRGRLTWLGTAGAQLDDLLVWLPCRLVALTLPLAGGPGPVRAW 251 Query: 219 PAWFASLGD---FHTSQYQVLTRLAQFSLARE 247 +L D + V + + Sbjct: 252 GVLRRALRDGAPDPSPNAGVSQAAYAHVVGVQ 283 >UniRef50_Q1Z1A5 Adenosylcobinamide-phosphate synthase n=4 Tax=Vibrionaceae RepID=Q1Z1A5_PHOPR Length = 318 Score = 83.5 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 64/248 (25%), Gaps = 13/248 (5%) Query: 2 TLFTTLLVLIFERLFKLGEHWQLDHRLEAF--------FRRVKHFSLGRTLGMTIIAMGV 53 +L L+ F + H + F + G A+ Sbjct: 13 SLLALWGALVIHWFFPIPTAVHPIHICQRFAILLADKVNNPNDNHKQRLFSGTLTWALIW 72 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 LL+ + +L L + + + +++A ++ D + Sbjct: 73 GTLLILLIALYQLVWVDILFQLTLLWVALDWRNTAKLSQHFISAYAKEDKVRCRQLLEYP 132 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + LL R LFW + G G + L Sbjct: 133 L-NRNTQNLSLLGLGKAGAETQLLSYG-RLVAGVLFWYAIAGGIGAIMYRVAICLARAWS 190 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 ++ +L +LD +P+R+ ++ + + + AL + Sbjct: 191 PSRH---QYNIFGLPAVRILAMLDIIPLRILALLITVGNNSKAALQGLIKQGEHWFLPGP 247 Query: 234 QVLTRLAQ 241 L Sbjct: 248 GWLLSATG 255 >UniRef50_A4CCJ7 Putative cobalamin biosynthesis protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CCJ7_9GAMM Length = 316 Score = 83.5 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 64/253 (25%), Gaps = 13/253 (5%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLE--------AFFRRVKHFSLGRTLGMTIIAMGVT 54 L L+ + ER L + + + ++ G + Sbjct: 12 LIILLVAICAERFLPLAKSYHPLTLYQLIIQNIRTRIYQANNPTWYQYLAGTLGAVLPAA 71 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 +L + F LI + + ++ + N + Sbjct: 72 LVLALCFGIISFAHYPQWFAGLILYISLDFQPLKQSLAKIPSLLMHNQKSTARDILKPWL 131 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 ++ L R Y +F + G + + R Sbjct: 132 -RRQTDTLSSLGIIKASIETLTLRFA-RHYFVIVFLYLFFGAYVALGYRLLQITRQTWSK 189 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 +P L +D +++++++VP+RL + L ++ Sbjct: 190 KTPINSP---LLRPVDTLIYLIEFVPIRLLCLSLILRKAIATPWQNIKKYGQFYYDKNSG 246 Query: 235 VLTRLAQFSLARE 247 L +L + Sbjct: 247 WLLSAMSSTLQIQ 259 >UniRef50_D2L565 Cobalamin biosynthesis protein CobD n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L565_9DELT Length = 314 Score = 83.1 bits (204), Expect = 9e-15, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 52/232 (22%), Gaps = 10/232 (4%) Query: 15 LFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVW 74 WQ + R G + + + LV Sbjct: 22 WLPHPVRWQGAAYAGLDVLADRLGRRTRPFGAACVVAVASTSVGVVWLATRLPAVGGLVG 81 Query: 75 LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQN 134 L + G + D A + L + V A + ++ Sbjct: 82 LYFAYAGLALGGLLREGRRAARLLEAGDVAAARPVVAGL-VSRDVAAENAAGLWRAVAES 140 Query: 135 ALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLH 194 N ++APLFWL VGG G + + + Sbjct: 141 VAENANDA-FVAPLFWLAVGGPAGLWAYKAVSTADSMWGYRTPRHGRLGWFG---ARADD 196 Query: 195 VLDWVPVRLAGVVYALIGHG-----EKALPAWFASLGDFHTSQYQVLTRLAQ 241 VL +VP RL + L A + A Sbjct: 197 VLAFVPARLTALGLWLAARLLRMEAGGTFGAMARDARKSASPNAGWPMAAAA 248 >UniRef50_B6WXS0 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WXS0_9DELT Length = 331 Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 56/226 (24%), Gaps = 13/226 (5%) Query: 32 FRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHY 91 R+ L L + + + L +R +L + V +++ LC+ + H Sbjct: 50 GPRMTLAGLAACLSVVLSVGLLAALPVRLAGELLGDGAAWCVCVVVVSLCLAPRCLDEHA 109 Query: 92 HAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWL 151 R D A A + + +++ + LA LFW Sbjct: 110 RRVAQPLERGDLEAARR-AVSMLVGRDPQQLDAHGVARACVESVGENLTDGI-LATLFWA 167 Query: 152 I-----VGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGV 206 G + + + + + VL+W P RLA Sbjct: 168 TAGLLLAGLPGAAALAACHRAANVLDALWGKRNETYRCFGTAAARLDDVLNWCPARLALP 227 Query: 207 VYALIG------HGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 L + + +L Sbjct: 228 CIVLAAALLPGLDARACRRVGWRDRHAHESPNSAWSEAAFAGALGL 273 >UniRef50_C7LUP6 Cobalamin biosynthesis protein CobD n=2 Tax=Desulfovibrionales RepID=C7LUP6_DESBD Length = 323 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 65/248 (26%), Gaps = 14/248 (5%) Query: 3 LFTTLLVLIFERLFKLGEHWQ-----LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLL 57 L + + LF W + L F LG +G T+ V Sbjct: 15 FVFLLGCVALDLLFGDPRDWPHPVRLIGKILARLEGWATSFFLGPRIGGTLSVAAVAAGS 74 Query: 58 LRALQGV-LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 + + + ++ L +G + G + + L A L + Sbjct: 75 AATVLLLTGLPLMGEILALYLGYAGLALGCLLRETNTVLALLEDGRLAAARAHLAGL-VS 133 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 ++ + N ++APLFWL + G + + + + Sbjct: 134 RDTDDMTEDEVCRALGETLAENFNDG-FVAPLFWLCLLGPAALWAYKAVSTVDSMWGYRT 192 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGE---KALPAWFASLGDFHTSQY 233 ++ +L W+P RLA + G A + Sbjct: 193 PR---FEKIGKAGARADDILAWMPARLAAISIWATGWLLLRPAAWERIARDARSMDSPNA 249 Query: 234 QVLTRLAQ 241 A Sbjct: 250 GWPMSAAA 257 >UniRef50_Q319H2 Adenosylcobinamide-phosphate synthase n=8 Tax=Prochlorococcus marinus RepID=Q319H2_PROM9 Length = 339 Score = 78.1 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 63/240 (26%), Gaps = 30/240 (12%) Query: 3 LFTTLLVLIFERLFKLGEHW------------QLDHRLEAFFRRVKHFSLGRTLGMTIIA 50 F L + F+ L ++ L F K L + I Sbjct: 7 FFIFLGSIGFDLLIGDPRFLIHPVQIIGFYIKKISDYLINNFGENKKILLWGGFIVAIST 66 Query: 51 MGVTFLLLRALQGVLFNVPTLLVWLLIGLL----CIGAGKVRLHYHAYLTAASRNDSHAR 106 +G++F L + ++ L+ L CI + + + + Sbjct: 67 IGLSFSLGKLIELSYVQSRNNFFSGLLIFLGLSSCIATNGLISSVKEIAELIEGKEINDQ 126 Query: 107 ATMA----GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIV--------G 154 + + V + E ++ PLFW+ + Sbjct: 127 NNRLIKVKVQRIVSRDVSSSSIEHLLRSSTESLTENSVDGI-FGPLFWIFIGIIFMKFSF 185 Query: 155 GTWGPV-TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGH 213 GP+ Y + L L + + +VP RL + L+G Sbjct: 186 FLPGPLSLGFSYKAISTLDSMLGYKYDYFRYLGFFSAKIEDIFTFVPSRLVLITLPLVGS 245 >UniRef50_C5SBC8 Cobalamin biosynthesis protein CobD n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBC8_CHRVI Length = 314 Score = 78.1 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 62/261 (23%), Gaps = 23/261 (8%) Query: 2 TLFTTLLVLIFERLFKLGE-HWQLDHRLEAF-----FRRVKHFSLGRTLGMTIIAMGVTF 55 L L + + L + + GR G+ + V Sbjct: 4 HLILILGACLLDALIGDPVYRLHPIRLIGHWILVCERALFALGLNGRLGGVIHWGLVVGT 63 Query: 56 LLLRALQG-----VLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMA 110 L L L I + ++ L +D A Sbjct: 64 ALWGWFGVRLGLDALHPWLAFGWDLFIAYSLLCTRELLEQGWRILRDL--DDLPAVRRRL 121 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRA 170 L + + L++ + L PL+ + G G + + + L + Sbjct: 122 SRL-VGRDTEPLQRDGVVRATLESLSENLTDG-VLTPLWAFCLFGLPGLILVKAISTLDS 179 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEK-----ALPAWFASL 225 + ++ W+P RL+ + AL + A A + Sbjct: 180 MVGYKNERYARFGWAG---ARSDDLIHWLPARLSVPLLALAALLRREHPLLAFRAAWRYH 236 Query: 226 GDFHTSQYQVLTRLAQFSLAR 246 + +L Sbjct: 237 ALLPSPNSGWSEAACAGALRV 257 >UniRef50_Q7VAR7 Cobalamin biosynthesis protein CobD/CbiB n=2 Tax=Prochlorococcus marinus RepID=Q7VAR7_PROMA Length = 322 Score = 76.9 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 22/233 (9%) Query: 20 EHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGL 79 F + FS+ + + LL + + + L+V + Sbjct: 28 SSVHKGRLFFRFGGTLITFSVISLSALCGWIIE--QLLFTSFFPIPQALSYLIV-IFALA 84 Query: 80 LCIGAGKVRLHYHAYLTAASRN----DSHARATMAGELTMIHGVPAGCDEREYLRELQNA 135 + A ++ + + + + + + V ++A Sbjct: 85 SSLAAKSLKRSVLEIINSLNNDLFKDNLELAQEKLSH-IVGRDVDKLDRNEILRATAESA 143 Query: 136 LLWINFRFYLAPLFWLIVGGT--------WGPV-TLMGYAFLRAWQYWLARYQTPHHRLQ 186 APLFW+++G GP+ + L + Sbjct: 144 SENAVDGI-FAPLFWMLIGIISWNISTTFPGPLAFAWFFKATSTIDSMLGYKVGNLRWIG 202 Query: 187 SGIDAVLHVLDWVPVRLAGVVYALIG-HGEKALPAWFASLGDFH---TSQYQV 235 + +L ++P RL + LI + K + + + + Sbjct: 203 ESGARLDDILTFLPCRLVLISLPLISNNWMKLFYIIRKAWSEGSKDISPNSGI 255 >UniRef50_D0I861 Adenosylcobinamide-phosphate synthase n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I861_VIBHO Length = 321 Score = 76.5 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 72/249 (28%), Gaps = 13/249 (5%) Query: 2 TLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV--------KHFSLGRTLGMTIIAMGV 53 TL ++ F + + R G +A+ Sbjct: 16 TLLAMWGAILLHWFFPVPSDISPLTLWRRVADAISDKVNHAEDTPEQQRLAGALSLAIMW 75 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 + + + L LL+ L +G V A SR+D T+ Sbjct: 76 LTVAVLLVALKQLVWIDWLFELLLLWLALGWKPVTNLALEVERALSRDDKPQARTLLA-- 133 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 T ++ + LL R + LFW V G G A L Sbjct: 134 TALNRQTYSLSPVGIAKAGCETLLVGYVRGLIGILFWYAVAGGIGAFLYALVAQLTRT-- 191 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 + + + A+L +LDW+P RL ++ A + AL A ++ + Sbjct: 192 -WPPRKQEYAQFGLPTSAMLSLLDWLPSRLFALLIAAGHRFQPALTAIREQGQNWSVNGA 250 Query: 234 QVLTRLAQF 242 L + Sbjct: 251 GWLLAASGA 259 >UniRef50_A8H190 Cobalamin biosynthesis protein CbiB n=2 Tax=Shewanella RepID=A8H190_SHEPA Length = 326 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 58/217 (26%), Gaps = 13/217 (5%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV--------KHFSLGRTLGMTIIAMGVTF 55 L+ ++ R+ L Q L + + + S G + + + Sbjct: 20 LVLLVSILLARIAPLPRSLQPLEWLSQLAKNLSAKANHVDRAPSQQLIAGTLAMMLLIIP 79 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 V +I LC+ R + A R++ ++ Sbjct: 80 FWAVISFLVELAEFPWFFETIIIYLCLQDDHFRYIANEVSIAIKRDNKIRARSLLAPWL- 138 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 + + ++ + A LF+ +GG + + Sbjct: 139 TRSTTSLSNVGLCKATIERLSTTSIYGTVSAILFY-AIGGVPLLIVARMIK---QLESCW 194 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 Y A+ + ++P +L + A+ G Sbjct: 195 PVYNPEFRVFGMPAYALSTLFHFLPAKLWNLSLAIQG 231 >UniRef50_Q6L0V6 Cobalmin biosynthesis protein n=1 Tax=Picrophilus torridus RepID=Q6L0V6_PICTO Length = 305 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 12/145 (8%), Positives = 39/145 (26%), Gaps = 6/145 (4%) Query: 68 VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 + ++ + I + H + + ND A ++ D Sbjct: 76 LIYIIFSIYIAKSTFAVKSMNQHIKRIINSYKNNDPDAARHYLSY--VVRRDTKIDDVLM 133 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 + ++ F + + G + + +A + Sbjct: 134 FSAAIETIAEGFVDGFLSEIM----IFPFLGMAGAYAFRIINTMDSNIAYKNDDYKNFGR 189 Query: 188 GIDAVLHVLDWVPVRLAGVVYALIG 212 V++++P R++ ++ + Sbjct: 190 AAAIFDTVINYIPARISPYLFYIAA 214 >UniRef50_A5GRI7 Cobalamin biosynthesis protein CobD/CbiB n=1 Tax=Synechococcus sp. RCC307 RepID=A5GRI7_SYNR3 Length = 311 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 77/290 (26%), Gaps = 44/290 (15%) Query: 23 QLDHRLEAFF-RRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLC 81 QL +EA R LG L ++ G Q L + + + ++ Sbjct: 30 QLRLWVEALGGDRPWALRLGGGLITALLVSGSAAAGWALEQLSLRSPWAMPLLVIALASA 89 Query: 82 IGAGKVRLHYHAYLTAASRN--DSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWI 139 + +RL + S + V + A Sbjct: 90 LAGRSLRLAVEDVIKPLSSAPPQLQQARQKLA-WIVGRDVDGLPAPELLRALAETASENA 148 Query: 140 NFRFYLAPLFWLIVGG--------TWGPV-TLMGYAFLRAWQYWLARYQTPHHRLQSGID 190 APLFW+++G GP+ + L + L + Sbjct: 149 VDG-LFAPLFWMLIGAGLWGLNPALPGPLALAWAFKASSTLDSMLGYRRGRLQWLGTAGA 207 Query: 191 AVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE--- 247 + L W+P RL + +G + V +L Sbjct: 208 RLDDGLTWLPCRLLALSLGQLG-------PALRDGASDPSPNAGVSQAAYAHALGLRLGG 260 Query: 248 -----------------PHVDKVETPKAAVSMAKKTSFVVV---VVIALL 277 + +A + ++++++ + + V+ALL Sbjct: 261 LNRYGGIERAKPLLNEGGRAADEKGVQAILDVSQRSALLWLGLSGVVALL 310 >UniRef50_Q07YV8 CobD-related protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q07YV8_SHEFN Length = 335 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 21/205 (10%), Positives = 47/205 (22%), Gaps = 13/205 (6%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAF--------FRRVKHFSLGRTLGMTIIAMGVTF 55 LI R + Q + S G+ + + Sbjct: 22 CILFCALILARFAPIPRDLQPLLWFNRLAVLISSKVNHPERAVSQQLIAGILATLILIVP 81 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 + + L+I C+ + +TA + + + + Sbjct: 82 SGIIVSFLLSLAAYPWFFELIILYFCLCDSAFKPVAEKVVTAIKKGNKQDAKQLLTPW-V 140 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 + ++ + LF G + LR ++ Sbjct: 141 SQNTQVLSEVGLSKTTIEKLFTTPIYGTLATILF----FSLGGATMALVVRMLRQLEHCW 196 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVP 200 Y H S + V+ ++P Sbjct: 197 PPYHPNFHIFSSFVGQFNRVIFFIP 221 >UniRef50_A3QBP9 Cobalamin biosynthesis protein CbiB n=3 Tax=Shewanella RepID=A3QBP9_SHELP Length = 327 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 36/299 (12%), Positives = 80/299 (26%), Gaps = 32/299 (10%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFRRV--------KHFSLGRTLGMTIIAMGVTFLL 57 L+ + L L +Q + R + + + R G + + V Sbjct: 21 LLVAIFMALLAPLPREYQAFYWFSQLARSLSAKVARADRSANQQRVAGSLSVLLLVLPFW 80 Query: 58 LRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIH 117 L + L LC+ + A +R D + + Sbjct: 81 LILSFLLELAAFPWFFECLFLYLCLCDEQFHKVAEETGQALARQDKQRARRLLSQWVYRD 140 Query: 118 GVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLAR 177 E + + L+ + +A + + VGG + +Y Sbjct: 141 TRE--LSEVGMSKTVIEKLMTTSIYGTVATILFFAVGGAPLVLGARMVK---QLEYTWPA 195 Query: 178 YQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLT 237 + + + +L W+P + A+ G + + + + Sbjct: 196 LNPQYREFGRPVYLLSSLLYWLPTQAWNFTLAIQGGPGAVVQLLRPTKSPLPINNHLATC 255 Query: 238 RLAQFSLAREPHVDK-------------------VETPKAAVSMAKKTSFVVVVVIALL 277 LA L E + T AA+ + + + + V+ + L+ Sbjct: 256 ALAAKVLNTELGGPQKFAGQRVDIARIGTGPKPTPHTITAALRLLRLSKGIWVLSVLLI 314 >UniRef50_Q9YAA0 Probable cobalamin biosynthesis protein cobD n=1 Tax=Aeropyrum pernix RepID=COBD_AERPE Length = 320 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 65/254 (25%), Gaps = 15/254 (5%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGV-----TFLLLRA 60 +L L + L H R+ GR G I + + + L A Sbjct: 24 LMLDLAYPEHRGLALKLHPVHTSYIMALRLVRPGAGRAWGAAIWLLTISSHMMVYASLLA 83 Query: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 ++ L +I L + + A+ + + + + Sbjct: 84 ASYLVHPALHTLAVGVIVKLSMPLRLLLDTCIKASRMAAAGRVE-CSRRLVQGIVRRDLS 142 Query: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 R +++ + Y +PL + I+ G G + L + Sbjct: 143 GEPLGRVLSACIESTAESLVDG-YTSPLTYYILLGPLGALLQRLSNTLDGAVGFKTPLLY 201 Query: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKA-----LPAWFASLGDFHTSQYQV 235 +L+++P RL V+ AL A L + Sbjct: 202 RQGWF---SAKADTLLNFIPARLTAVMVALAAPLAGASTLGSLRCIARCARLLESVNAGY 258 Query: 236 LTRLAQFSLAREPH 249 +L Sbjct: 259 PISAFAGALDVRLE 272 >UniRef50_C7MVP2 Cobalamin biosynthesis protein cobD/CbiB n=2 Tax=Actinomycetales RepID=C7MVP2_SACVD Length = 326 Score = 75.0 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 61/252 (24%), Gaps = 17/252 (6%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFR------RVKHFSLGRTLGMTIIAMGVTFLLLR 59 LL ++ + + + D L R R+ H G + V L Sbjct: 14 LLLGVLADSMVGDSIRGRADASLARVARASERRMRIDHPVAGAVHVGVVTGAAVLAGLAV 73 Query: 60 ALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGV 119 G + +G ++ A D A Sbjct: 74 ERLGRGRPLVAAAGTAASTWAVLGGARLAADGTALARQLETGDLAATRQTLKAWD-SRCS 132 Query: 120 PAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQ 179 ++ + +APL W V G G + +R Q Sbjct: 133 QELDGVSLARASVEAVAQNSSD-TVVAPLLWGAVAGVPGLLGARAVGVVRRMV----AEQ 187 Query: 180 TPHHRLQSGIDAVLHVLDWVPVRLAGVVY-----ALIGHGEKALPAWFASLGDFHTSQYQ 234 R S + V++ +P R A + + G A AW + Sbjct: 188 AGRERFGSAAAHLDTVVNLLPTRAAAALTVAGAPVVGGSARAAWRAWQRDTVLHPSPNAG 247 Query: 235 VLTRLAQFSLAR 246 + +L Sbjct: 248 RVVAAYAGALEI 259 >UniRef50_A3EVG3 Cobalamin biosynthesis protein (CbiB) n=2 Tax=Leptospirillum sp. Group II RepID=A3EVG3_9BACT Length = 338 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 12/198 (6%) Query: 12 FERLFKLGEHWQLDHRLEAFFRR-------VKHFSLGRTLGMTIIAMGVTFLLLRALQGV 64 F R + + LE R ++ + + G+ ++ + L L L Sbjct: 27 FYRFHPVVAMGRTGRWLERLILRTVSRPWLLRFWGMLLLFGVVLLFGAGSVLFLFVLDHW 86 Query: 65 LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCD 124 L+ + G + + H A + D + Sbjct: 87 GQADLAALLTVFWGYQLLAGKSLEDHLEAVYSPLVAGDLSGARAALAR-IVGRDTEELDL 145 Query: 125 EREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHR 184 +++ N APLF+ +GG + + L + + P+ Sbjct: 146 SGIVRGAIESLSENANDALV-APLFFFALGGVGLLMAYKSVSTLDS---QVGYKYLPYRD 201 Query: 185 LQSGIDAVLHVLDWVPVR 202 L ++ ++P R Sbjct: 202 LGWASARADDLMAFLPAR 219 >UniRef50_Q12KE5 CobD-related protein n=4 Tax=Shewanella RepID=Q12KE5_SHEDO Length = 332 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 67/227 (29%), Gaps = 14/227 (6%) Query: 4 FTTLLVLIFERLFKLGEHWQ----LDHRLEAFFRRVKHFSLGRT----LGMTIIAMGVTF 55 F + L F + + +Q L + +V H +T G + + Sbjct: 21 FVLFMALFLAHKFPIPKGYQPFIALHLLAKQLASKVNHNDRSQTQQLIAGTLASLLLLFP 80 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 + LL+ +C+ A A + ++ + T+ + + Sbjct: 81 FWAIVSFLLAMAASPWFFELLVLYVCLSATSFSGTAREIAAALKQQENQSAKTLLADW-V 139 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 + + L + LF +GG+ ++ R + Sbjct: 140 SQDTQGLSEVGLSKASISQLLTRPCYGAISCILF-FAIGGSP---LVLAACMCRQLELSW 195 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWF 222 Y + I + ++ W+P L A+ G + A+ AW Sbjct: 196 PPYYPANRHFGRFIYRLNRIIFWLPNGLWNFSLAIQGG-KVAMTAWL 241 >UniRef50_UPI0001AEBF52 adenosylcobinamide-phosphate synthase n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBF52 Length = 315 Score = 74.2 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 79/255 (30%), Gaps = 17/255 (6%) Query: 2 TLFTTLLVLIFERLFKLGEHWQLDHRLEAFFR---------RVKHFSLGRTLGMTIIAMG 52 +LF L + + L++ + + + R S G + Sbjct: 12 SLFVLWLAIAVDALWRWPQSTHPLTLMRYLVQQMGRKVVPSREYGRSQHYISGSLAALVL 71 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 + L++ V + +I + + G R Y L + RN MA Sbjct: 72 LAPLVVCVAILVYMAQYPVFFEAIILVALLDYGYQRQQYKKVLASVGRNKKSLAREMAQT 131 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 +T + D +++ L + Y +F+ +V G G + Sbjct: 132 ITARQC-DSLSDIGIAKAAIESLWLKFLY-LYCGVIFYFVVAGPIGALIYRLLLLTSWQW 189 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 ++ T + ++++L+ P + G+ L+ H + + A + Sbjct: 190 HYRTPAMTF---FAKPVRKLVYLLNVPPAVIGGLATLLVSH---PIKGFRAIKRSPVKDK 243 Query: 233 YQVLTRLAQFSLARE 247 +L L L + Sbjct: 244 TSLLLALMGGVLDIK 258 >UniRef50_Q18KB2 Cobalamine biosynthesis protein (Adenosylcobinamide biosynthesis protein) n=2 Tax=Halobacteriaceae RepID=Q18KB2_HALWD Length = 306 Score = 73.8 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 25/277 (9%), Positives = 60/277 (21%), Gaps = 19/277 (6%) Query: 4 FTTLLVLIFERLFK-LGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVTFLLLRAL 61 ++ + + + V + +G+ I + Sbjct: 7 IAVIVAIGLDTIIGEPPAFIHPVALFGQLVDIVDRSYDSPNIVGILIATTLPIGFGIVTA 66 Query: 62 QGVLFNV-----PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 V + I + H + + D A L Sbjct: 67 TSVYVVFSVNSQLGAFAAGCVLFTLISLRLLLRTVHDVVM-MTTADVSAARYELRALAG- 124 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGT----WGPVTLMGYAFLRAWQ 172 +++A + ++ PL + G + + Sbjct: 125 RDASELDAAHIRSAAVESAAENLADG-FIGPLLAFTLFAPVSVSIGVASAAWVKAINTLD 183 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGH--GEKALPAWFASLGDFHT 230 L P + + + ++ WVP RL + ++ A + Sbjct: 184 SMLGYRSKP---IGTASARLDDIIMWVPARLTAALLSVAAGHPLLPLRQQVRADAAQTAS 240 Query: 231 SQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTS 267 L H + + S+ K+ Sbjct: 241 PNAGWPMATIAALLPARLHKPDTYELRTSASLPDKSV 277 >UniRef50_B7VJ20 Cobalamin biosynthesis protein n=54 Tax=Vibrionales RepID=B7VJ20_VIBSL Length = 317 Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 60/246 (24%), Gaps = 12/246 (4%) Query: 3 LFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKH-------FSLGRTLGMTIIAMGVTF 55 L L+F + + F + +S G + V Sbjct: 14 LLVMWGALLFHLILPIPHAAHPTTLWHKFAELLASKVNNNHNYSQSLISGTLAWGLMVLP 73 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 L+ L + L L + LL I + + A R D A + + Sbjct: 74 TLVILLALQPLVWQSQLFELALLLLAIDWRNNEKLANQLIKALGREDKAAARQLLAPIIN 133 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 + ++ R + LFW +GG + Sbjct: 134 RQT--ESLSSLGLGKAATETIIMGYARNVVCVLFWYAIGGGIAALMYRLVV---ELARAW 188 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQV 235 + + S ++ +L+++P+R ++ + Sbjct: 189 SPSRKQFSPFGSTAIKIVAILEFIPMRFFALMIVCGDKATHTFKMMLVQSRSWPLPGPAW 248 Query: 236 LTRLAQ 241 L Sbjct: 249 LITAVG 254 >UniRef50_D0Z030 Adenosylcobinamide-phosphate synthase n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z030_LISDA Length = 319 Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 26/248 (10%), Positives = 61/248 (24%), Gaps = 14/248 (5%) Query: 2 TLFTTLLVLIFERLFKLGEHWQLDHRLEAF--------FRRVKHFSLGRTLGMTIIAMGV 53 +L L+ + + + G Sbjct: 14 SLLIMWGALLLHWVLPIPTAIHPLTIWQRLAVMIAEKVNHSNDSPKQQTLAGSLAWFTLW 73 Query: 54 TFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGEL 113 L+ + + L + L + + + A + + + Sbjct: 74 GLALIFFIALYQLVQLDSVFQLTLLWLALDWRSIDEFGQRFTQAYQQENKPLCQHLLAPW 133 Query: 114 TMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQY 173 + V + L+ R + LFW +GG G + + L Sbjct: 134 -VHRNVAPLSLLGLGKAGAETLLVGYG-RNVVTVLFWYCIGGGLGALLYRLASGLARAWS 191 Query: 174 WLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQY 233 + +LD VP+R+ ++ +G++AL ++ + Sbjct: 192 PTRSQFQF---FGQTASKITALLDIVPMRIFSLLLCFGNNGKQALQGLQQQGENWLSPGP 248 Query: 234 Q-VLTRLA 240 +L Sbjct: 249 GWLLIASG 256 >UniRef50_Q7WVE4 Putative AmpE (Fragment) n=1 Tax=Xenorhabdus nematophila RepID=Q7WVE4_XENNE Length = 119 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 65/118 (55%) Query: 18 LGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLI 77 + +HWQL+ L F R+K SL +LGMT + +T+ L+ V F + +++ ++I Sbjct: 2 MRDHWQLERYLVPAFARLKSHSLWGSLGMTFLVALLTWKLIDISSSVAFGILAIVLGIII 61 Query: 78 GLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNA 135 LLCIGAG++ Y YL A ++D + LTMI G + E LRE+QN+ Sbjct: 62 SLLCIGAGRLWHDYRGYLQAVRQDDFGQQKKYLARLTMIQGTLPDTTKEERLREIQNS 119 >UniRef50_B8CQP3 CobD-like protein n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CQP3_SHEPW Length = 331 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 61/217 (28%), Gaps = 13/217 (5%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRV--------KHFSLGRTLGMTIIAMGVTF 55 L+ ++ R+ L Q L + + S G+ + + + Sbjct: 20 IVLLMSVLLARMAPLPRQLQPLVWLNNLALNLSIKVNHTHRAPSQQIIAGVLSMLLLLLP 79 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTM 115 L + L+ +C+ R A R++ T+ Sbjct: 80 FWLIISFFIELAEFPWFFEALVIYICLQDDHFRYIAREVSIAIQRDNKGRARTLLQPWL- 138 Query: 116 IHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWL 175 + + ++ + LF+ +GG + L+ Sbjct: 139 NRRTQSLSNVGLSKVTIERLATTPTYGIASTALFY-SIGGVPLLLAARM---LKQLDNAW 194 Query: 176 ARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 Y + G+ A+ V+ ++P +L AL G Sbjct: 195 PVYNPQYRFFGVGVYALSSVVHFIPAKLWSFSLALQG 231 >UniRef50_B1YBA3 Cobalamin biosynthesis protein CbiB n=2 Tax=Thermoproteaceae RepID=B1YBA3_THENV Length = 296 Score = 71.5 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 60/244 (24%), Gaps = 21/244 (8%) Query: 10 LIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQG--VLFN 67 + RL H + A K +GR L + + V Sbjct: 24 YLVTRLIHPALH-PVSLVYRAASPLAKPGGVGRGLAVLAAGLAVGLAPALLAHWAKPHLG 82 Query: 68 VPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDERE 127 + LV + L G + R A + + + + Sbjct: 83 LLGPLVEGYLLKLSFG-------VAHIVYPCGR---DADLRRVAQQFVRRDLSSASGGHV 132 Query: 128 YLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQS 187 L+ A + + +PL W I+ G G L + + Sbjct: 133 RSACLEAAAESLVDSYV-SPLMWYILLGLPGAWLQRAVNTLDGLVG-----FPRFGKAGA 186 Query: 188 GIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 + L+++P RLA + + + P A + +L Sbjct: 187 PAAYLDTALNYIPARLAALCILAVSN--GWRPPLLAHRRRMASRNAGWPIAALASALGVV 244 Query: 248 PHVD 251 Sbjct: 245 LEKP 248 >UniRef50_B6IPQ1 Cobalamin biosynthesis protein CobD n=1 Tax=Rhodospirillum centenum SW RepID=B6IPQ1_RHOCS Length = 336 Score = 70.7 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 63/240 (26%), Gaps = 11/240 (4%) Query: 14 RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLV 73 R LD RL R L L + + + + ++ Sbjct: 39 RALAARAGDWLDRRLNRIERSDATRRLRGLLTVLFLMLTALAVGTAVTVVARLLPYGWML 98 Query: 74 WLLIGLLCIGAGKVRLHYHAYLTAASRNDSH-ARATMAGELTMIHGVPAGCDEREYLREL 132 LL+ L C+ + L A S D+ A Sbjct: 99 ELLLVLRCVAVRQPWAGMRGVLDALSGPDASLEAGRSALAEISDRQSWRLDLHGVVRAAA 158 Query: 133 QNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAV 192 + + R +AP FW + G G + + A + + + Sbjct: 159 EAGARDLA-RRVVAPAFWYALLGMPGML---AWTVADALAATIGHDTPRYADFGAAAART 214 Query: 193 LHVLDWVPVRLAGVVYALIGHGE------KALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 ++ W+P RL G++ AL A+ A A+ +L Sbjct: 215 GRIMVWLPARLTGLLLALAALFVPGAQGPGAVRAMLATAPGHPARDDAWPVAALAGALDL 274 >UniRef50_Q3ALC6 Cobalamin biosynthesis protein CobD n=13 Tax=Cyanobacteria RepID=Q3ALC6_SYNSC Length = 348 Score = 70.4 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 68/237 (28%), Gaps = 28/237 (11%) Query: 5 TTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGV 64 ++ ++L E W DH ++ G + ++ +T L L + Sbjct: 40 VVVMGWSIQQLRHWVEPWAGDHPIK------LRIGGGLISLILVLGSVLTGWCLERLLWL 93 Query: 65 L--FNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAA---SRNDSHARATMAGELTMIHGV 119 + +L + L + A +R A L + D + V Sbjct: 94 PSPWAWLSLPLLTLSLASALAARSLRDSVLAVLNLLPSAAEGDLKPARRNLS-WIVGRDV 152 Query: 120 PAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGT--------WGPV-TLMGYAFLRA 170 + E + A APLFW+ +G GP+ G+ Sbjct: 153 QSLNREGLLRAAAETASENAVDG-VFAPLFWMGIGALLWMVMPTGPGPLALAWGFKASST 211 Query: 171 WQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGD 227 L L + + +L W+P RL + L+ P W Sbjct: 212 LDSMLGYRSGRLRWLGTAGARLDDLLTWLPCRLVMLTLPLV------CPPWRNWAQR 262 >UniRef50_Q47UY6 CobD/cbiB family protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47UY6_COLP3 Length = 321 Score = 70.0 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 67/247 (27%), Gaps = 9/247 (3%) Query: 4 FTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL----GMTIIAMGVTFLLLR 59 ++ + +V + G G+ + + + +++ Sbjct: 19 VVLIIKSLVSHFIAHEPLRFFQFYCLQLGNKVNNSKNGTQHQTIAGLLALLVTLVPIVII 78 Query: 60 ALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGV 119 F L L+ L +G+ + A ++ L + Sbjct: 79 LWLFADFIAVDYLWQGLLLYLALGSLNLGQVNIGIAQALVAKKNYLAKQTLKPLL-LRET 137 Query: 120 PAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQ 179 ++ LL + Y+ F I+ G ++ + Y Sbjct: 138 DQLSSVGLSKAAIEMHLLRSLQQIYV-VSFLFIIVGPLAALSYRL---MLEMHYCWNTKL 193 Query: 180 TPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRL 239 + + ++ W+P RL ++ L G+ +L W + G + Sbjct: 194 GRYKHFGFYSQLFIQLIQWLPSRLMALLILLSTVGQGSLLFWRLTRGHLFKLNNNFFIAV 253 Query: 240 AQFSLAR 246 FSL Sbjct: 254 HAFSLTV 260 >UniRef50_Q0HG71 Cobalamin biosynthesis protein CbiB n=9 Tax=Shewanella RepID=Q0HG71_SHESM Length = 330 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 33/281 (11%), Positives = 70/281 (24%), Gaps = 28/281 (9%) Query: 22 WQLDHRLEAFFRRV----KHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLI 77 H + +V + S T G + + V + L+ Sbjct: 44 IWFSHLAKQLAAKVNRPGRAPSQQATAGFLAMLLLVFPFWAIITFLLELAAFPWFFEFLV 103 Query: 78 GLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALL 137 LC+ A R D+ + + + + ++ Sbjct: 104 LYLCLTDAGFSQVADEISKALKRQDNASAKKLLQPWVV-RDTDNLSEVGLTKATIEKLAT 162 Query: 138 WINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLD 197 + + +F+ + G + + L Q + + S + + L Sbjct: 163 APIYG-TASTIFFFAIAGAPMVLAVRMIKQLELS---WPPIQPKYQQFCSSVHLISTALL 218 Query: 198 WVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKV---- 253 +P L + A+ G + + S Y + L L E + Sbjct: 219 AIPAWLWSLSIAIQGGPKALALLFRTSKNHPALRGYVMSVSLVANILRIELAGPQKFSGQ 278 Query: 254 ---------------ETPKAAVSMAKKTSFVVVVVIALLTI 279 E AV + + + I L+ I Sbjct: 279 RIDVAKIAYGPQPHQEMIAPAVKLTSRACAIWFSFITLIPI 319 >UniRef50_Q46JF5 Adenosylcobinamide-phosphate synthase n=2 Tax=Prochlorococcus marinus RepID=Q46JF5_PROMT Length = 315 Score = 68.0 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 55/203 (27%), Gaps = 23/203 (11%) Query: 28 LEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTL----------LVWLLI 77 L+ R+ + + +I + L ++ + L + LI Sbjct: 15 LKGLTERIAKENKSKLYIGGLIITLLVVSLSGICGWMIERLFLFFDIKNPILSTLFFCLI 74 Query: 78 GLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE---LTMIHGVPAGCDEREYLRELQN 134 + + + L + ++ + + L + V + Sbjct: 75 ISSSLASRSLNKSILEILNIIKKENTIDNLSNLRQKLSLIVGRDVENLDINEILRALAET 134 Query: 135 ALLWINFRFYLAPLFWLIVGGT--------WGPVT-LMGYAFLRAWQYWLARYQTPHHRL 185 A APLFW+ +G GP+ + L + L Sbjct: 135 ASENSVDGI-FAPLFWMFLGTIFWEFNQSMPGPLAMAWIFKASSTIDSMLGYKEGKLKWL 193 Query: 186 QSGIDAVLHVLDWVPVRLAGVVY 208 + ++ W+P R+ + Sbjct: 194 GFTGAKLDDLMVWLPSRIVLITL 216 >UniRef50_Q0VRX9 Inner membrane protein AmpE n=2 Tax=Alcanivorax RepID=Q0VRX9_ALCBS Length = 282 Score = 67.3 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 73/283 (25%), Gaps = 13/283 (4%) Query: 1 MTLFTTLLVLIFERL-FKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLR 59 M ++V+ R+ D R + + +R + + L+ Sbjct: 1 MKFIVLIVVMGLRRMDLGWSTLLADDERHQRWLQRCGSRIGQPARVWWVAVLLPAVLIAW 60 Query: 60 ALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDS-HARATMAGELTMIHG 118 A + LLV L LL + + R A Sbjct: 61 AACWLSGFWGQLLVLGLGILLLLWLLGSYSEFRYVDELLVRGRMNDPDGFSALATDEFSV 120 Query: 119 VPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARY 178 D + + + L +FWL++ G ++ R Sbjct: 121 TGVPGDPAYHQQLNEQILARE--ERLFVAIFWLVLLGFGAAFLVVM----NHAWLQHKRR 174 Query: 179 QTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTR 238 + + L P +L + AL G+ A+ S S +L+ Sbjct: 175 HGREEDAPVWQQTLDNWLSLPPRQLLILSMALAGNFSAAMNRMRGSWWQLPPSASLLLSV 234 Query: 239 LAQFSLAREPHVDKV-----ETPKAAVSMAKKTSFVVVVVIAL 276 + +A + + + ++V AL Sbjct: 235 AHVAQEESSEACPATLNIALDQLEALHGLLLRCVAIWLIVAAL 277 >UniRef50_D1N4N3 Cobalamin biosynthesis protein CobD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N4N3_9BACT Length = 327 Score = 67.3 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 24/266 (9%), Positives = 55/266 (20%), Gaps = 24/266 (9%) Query: 3 LFTTLLVLIFERLFKLGEH-WQLDHRLEAFFRRVKHFSLGR----------TLGMTIIAM 51 L + + L + +V+ F+ R + + Sbjct: 5 LLLLGVAFALDLLIGDPHSPLHPVALFGNYAAKVEAFARRRFGSTVRAGFLGWCLAALPP 64 Query: 52 GVTFLLLRALQGVLFNVPTLLVWLLI-GLLCIGAGKVRLHYHAYLTAASRNDSHARATMA 110 + L F V + + I + H A + +D + Sbjct: 65 ALFAAGSILLVRRGFGPHAAAVAAGVWLYMTIALRSLVQHAEAVRRPLAADDLVSARRAL 124 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGY----- 165 + + +++ + + LFW + G G Sbjct: 125 S-MIVSRDTAGLDRSEIVRGGIESIAENLIDA-VTSALFWAVAGYLAGGAAGAAGAAVLL 182 Query: 166 AFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAG-----VVYALIGHGEKALPA 220 + + + ++P RL L G + Sbjct: 183 RAVNTLDAGWGYKNERYLAFGRAAARIDDAAHFIPARLTVPAIALAALLLRGSFGRTFLT 242 Query: 221 WFASLGDFHTSQYQVLTRLAQFSLAR 246 D + +L Sbjct: 243 ALRHRHDHPSPNSCYGMAGFAGALRI 268 >UniRef50_B4RX46 Adenosylcobinamide-phosphate synthase n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RX46_ALTMD Length = 314 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 72/255 (28%), Gaps = 17/255 (6%) Query: 2 TLFTTLLVLIFERLFKLGEHWQLDHRLEAFFR---------RVKHFSLGRTLGMTIIAMG 52 +L L + + L++ + + + R G + Sbjct: 12 SLLVLWLAIAVDALWRWPQSTHPLTLMRYLVQQMGRKVVPSREYGPGQHYISGSLAPLVL 71 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGE 112 + L++ V + LI + + G R Y L + RN M Sbjct: 72 LAPLVICLAILVYMAQYPVFFEALILVALLDFGYQRQQYKKVLASVGRNKKSLAREMVQT 131 Query: 113 LTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQ 172 +T D +++ L + Y +F+ +V G G + Sbjct: 132 ITARQCHS-LTDIGIAKAAIESLWLKFLY-LYCGVIFYFVVTGPIGALIYRLLLLTSWQW 189 Query: 173 YWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQ 232 ++ + ++ +L P + G + L+ H L + A + Sbjct: 190 HYRTPNMVF---FAQPVRKLISILVVPPAVIGGFITLLVSH---PLKGFRAIKHSPVKDK 243 Query: 233 YQVLTRLAQFSLARE 247 +L L L + Sbjct: 244 TSLLLALMGGVLNVK 258 >UniRef50_Q5E2X2 Adenosylcobinamide-phosphate synthase n=3 Tax=Vibrio fischeri RepID=Q5E2X2_VIBF1 Length = 317 Score = 66.9 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 64/243 (26%), Gaps = 12/243 (4%) Query: 2 TLFTTLLVLIFE-------RLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVT 54 +L LIF + + + L + + G A+ + Sbjct: 13 SLLVLWGALIFHLIIPISPQFHPMSFWHKFALILAEKVNTSRPYQQRLLSGSLAWALMII 72 Query: 55 FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT 114 +++ + V L L + LL + V + A ++ D Sbjct: 73 PVIIVYIAAVPLIWNIPLFNLGLLLLSLEWRGVEKLCKDTIHAINKEDKSRAKETLKHWV 132 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + ++ R + LFW + G G Sbjct: 133 NRD--VEPLSLLGLGKASSETIILAYARTVIGVLFWYGIAGGIGAFVYRLS---LELARA 187 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 + + + ++LD++P++L ++ + + + ++ Sbjct: 188 WSPSRDSFRPFGIPALRIQYILDFLPLKLFTLLCFIGKNIRHSFQQLQLQKKNWANKNNA 247 Query: 235 VLT 237 L Sbjct: 248 GLL 250 >UniRef50_Q5R043 Cobalamin biosynthesis membrane protein n=1 Tax=Idiomarina loihiensis RepID=Q5R043_IDILO Length = 318 Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 59/212 (27%), Gaps = 13/212 (6%) Query: 13 ERLFKLGEHWQLDH-------RLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVL 65 ER F E W + R + L + + ++ L+L V Sbjct: 24 ERWFPWPEQWHPFAVLRLMAAYMSGKVNRPNRPVGQQRLAGFLAWLTMSLLVLLPAAIVF 83 Query: 66 FNV-PTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCD 124 +L + LI L+ + V + R +A +T + Sbjct: 84 AGAEVSLAIGWLILLVSLRQQPVSHAVKLADSHLQRGRKNAARAWLSRIT-WRDCDLLSE 142 Query: 125 EREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHR 184 ++ I + LFW + GP+ +G L Q + Sbjct: 143 HGIAKTSIELRATSILEHRFTPLLFWFV----GGPLAALGVRTLSELTQVWPVAQAKYRH 198 Query: 185 LQSGIDAVLHVLDWVPVRLAGVVYALIGHGEK 216 + + ++P + + + ++ Sbjct: 199 FGLATHWLHTITHFLPSFILALAARFMALFQR 230 >UniRef50_C0G2L5 Cobalamin biosynthesis protein CbiB n=2 Tax=Halobacteriaceae RepID=C0G2L5_NATMA Length = 341 Score = 64.6 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 28/263 (10%), Positives = 62/263 (23%), Gaps = 28/263 (10%) Query: 4 FTTLLVLIFERLFKLGEH-WQLDHRLEAF----------FRRVKHFSLGRTLGMTIIAMG 52 F + L + + + + L R + + + + Sbjct: 6 FLLAVALGLDHIVGEPRNAFHPVAWLGRLIAPLDREWSDRDRYQRLAGVPIALVVPLVPA 65 Query: 53 VTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAAS--RNDSHARATMA 110 L + + L+ L I + + A + + Sbjct: 66 AAAAGFVLAAAALSPLVGIAAAALVLWLTISLRSLLELTDEVVRATAGSAAELETARDRV 125 Query: 111 GELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTW-------GPVTLM 163 L + + L++A + A L + + + Sbjct: 126 RGL-VGRDTASLSPAELRSGALESAAENLADGLV-ATLLPFALLAPFSLPAAAAAAAWVK 183 Query: 164 GYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFA 223 G L + + P + + + W+P RL+ V AL AL A Sbjct: 184 GVNTLDSMLGY------PSKPHGTASARLDDFVMWIPARLSAVSIALAAGAPLALRRAAA 237 Query: 224 SLGDFHTSQYQVLTRLAQFSLAR 246 + +L+ Sbjct: 238 WARTPPSPNSGWPMATLACALSV 260 >UniRef50_Q1ZH13 Adenosylcobinamide-phosphate synthase n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZH13_9GAMM Length = 324 Score = 63.8 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 36/306 (11%), Positives = 90/306 (29%), Gaps = 29/306 (9%) Query: 2 TLFTT-LLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL---GMTIIAMGVTFLL 57 + + LL L L ++ + ++V S + + + F + Sbjct: 16 SFISVALLSLFISLPKDLNPLSAIELIFQQIAKKVNLDSRSDSYKKMASLLSIALIFFPV 75 Query: 58 LRALQGVLFNVP-TLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMI 116 + + V L++ LI + + ++ Y A + + +LT Sbjct: 76 FLIISQLYNVVFQPLILDFLILFILLSWHDKKIVYQQISQALVNKNLASAKYKLAQLT-R 134 Query: 117 HGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLA 176 +++ +L + + A +FW ++ G +G + Sbjct: 135 RDTKPLSLMGINKASIESMVLQFS-ASWFAVIFWYLLTGIYGALFYRIVQIC---AQQWN 190 Query: 177 RYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVL 236 Q + + + ++L + L G +AL + + F +H ++ Sbjct: 191 SKQQEYDAIAVIPSVLYNILLFPIHLLVGFTFALYDRPLHNITSKFKQSTHWHHFSSGLM 250 Query: 237 TRLAQFSLAR-------------------EPHVDKVETPKAAVSMAKKTSFVVVVVIALL 277 FS+ K+E ++ +++ + I Sbjct: 251 LASFAFSMKLGLGGVRIYGKQKITYPELGTGESPKIEHVALSLQRISLSAWFWLYCITGY 310 Query: 278 TIYGAL 283 T + L Sbjct: 311 TFFPLL 316 >UniRef50_Q8ZZ88 Cobalamin biosynthesis protein B (CbiB) n=1 Tax=Pyrobaculum aerophilum RepID=Q8ZZ88_PYRAE Length = 323 Score = 63.4 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 46/175 (26%), Gaps = 10/175 (5%) Query: 38 FSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTA 97 G G+ ++ L A+ L +L +L G L K+ Sbjct: 83 GRGGLLRGVLVLITTSLPLTAAAVLYGLARGDGILWSVLEGYLL----KLSFSITHITYG 138 Query: 98 ASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTW 157 A + + + ++ A + + + LFW + G Sbjct: 139 CLMGYDGGIACAVVKEFVRRDLSGCEKGLVNSACIETAAESLVDS-FASTLFWYGLLGLP 197 Query: 158 GPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIG 212 G + + L +++++P RL +G Sbjct: 198 GAWLQRSVNTADGLVGFR-----QYGPLGLPSALADTLMNFLPARLTSFFLLGVG 247 >UniRef50_B8J3Z1 Cobalamin biosynthesis protein CbiB n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J3Z1_DESDA Length = 384 Score = 63.4 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 82 IGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINF 141 + G + L + + D + L + L Sbjct: 114 LAMGSLLQTGRTVLERVEHAPVPEAREALS-WLVSRETGSM-DRPLMRKTLADTLSENLT 171 Query: 142 RFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPV 201 + AP FWL+VG GPV L Y + L L ++P Sbjct: 172 DAFTAPFFWLLVG---GPVALWCYKAVSTTDSMWGYTTDKWRWLGWAGARADDALAFIPA 228 Query: 202 RLAGVVYALI 211 RLA + AL Sbjct: 229 RLAALSTALA 238 >UniRef50_D2RXI0 Cobalamin biosynthesis protein CobD n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RXI0_9EURY Length = 378 Score = 61.5 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 31/273 (11%), Positives = 59/273 (21%), Gaps = 46/273 (16%) Query: 8 LVLIFERLFK-LGEHWQLDHRLEAF-----FRRVKHFSLGRTLGMTIIAMGVT-----FL 56 L + L R G+ I + Sbjct: 11 LAFSLDLLVGEPPNALHPVAWFGRLVGALDREWAATERGQRLAGVGIAVLAPLCPTVAAG 70 Query: 57 LLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAY---------------------- 94 AL G L + +V ++ L + A Sbjct: 71 GAVALAGALSPLAGAVVAGVVLFLTTSLRSLLELTRAVVDATAAAATATATAGTDGTDAR 130 Query: 95 LTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVG 154 A + + A L + +++ + L + ++ Sbjct: 131 AEAGADDGLEAARERVRGL-VGRDTSTLSAAEIRSAAVESVGENLADGLVATLLPFALLA 189 Query: 155 GTWGPVT------LMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVY 208 P + G L + + P + + ++ W+P RLA V Sbjct: 190 PLSLPAAAAAAAWVKGVNTLDSMLGY------PAKPHGTASARLDDLVMWLPARLAAVTI 243 Query: 209 ALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQ 241 A+ G AL D + Sbjct: 244 AVAGADPLALGRARKWARDPPSPNSGWPMATLA 276 >UniRef50_Q53WA0 Cobalamin biosynthesis protein CbiB n=2 Tax=Thermus thermophilus RepID=Q53WA0_THET8 Length = 282 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 52/236 (22%), Gaps = 17/236 (7%) Query: 15 LFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVW 74 + + + G G A+G L A L P W Sbjct: 13 FGEPPSRLHPVVWMGRYLAWAWRRVRGFPSGAFYWALGALLFALPAFLLDLLLRPLAWGW 72 Query: 75 LLIGLL----CIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLR 130 + + L + L A R + + E Sbjct: 73 V-VLGLLLKPLFSLRMLLLEVFGVEKALEEGLEAGRRRL--SRIVSRRTEDLSAEEVREA 129 Query: 131 ELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGID 190 L++ ++ L+ + G G A + ++ Sbjct: 130 ALESLAENLSDSLLAPLLY-YALFGLGGAALYRYANTADAMWGYPEHGARGAFAARA--- 185 Query: 191 AVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR 246 +L+ +P RL G++ G + L + L Sbjct: 186 --DDLLNLLPARLTGLLLCPPGLWGRLLQEARK----TPSPNAGFPMAALALRLGV 235 >UniRef50_C0R144 Cobalamin biosynthesis protein B n=3 Tax=Brachyspira RepID=C0R144_BRAHW Length = 324 Score = 59.2 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 23/212 (10%), Positives = 58/212 (27%), Gaps = 13/212 (6%) Query: 43 TLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND 102 + + I + L L + + L++ L + + +G K + D Sbjct: 58 SSLILIAICFLIPFFLLMLLYKVHFILGLIIELALCYITLGIRKPLEISSYIYHSLIIGD 117 Query: 103 SHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTL 162 ++ E DE+ ++ ++ I Y+ P +L++GG + Sbjct: 118 IKKAKSLLKE-NAEVDADDIEDEQMIKNTIEYTIISIA-EDYIYPAIFLLLGGAPLCIAY 175 Query: 163 MGYAFL--RAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHG-----E 215 L + + ++L+ +P ++ + + Sbjct: 176 KVIYVLSESSSDTIYLDENKTDDIFGIFNIKLCYILNIIPSFFTALICIITSIFFKYEYK 235 Query: 216 KALPAWFASLGDFHTSQYQVLTRLAQFSLARE 247 A+ L + E Sbjct: 236 NAISVLKKDGKT----NKARLEAGIAGPMNIE 263 >UniRef50_B9LRL4 Cobalamin biosynthesis protein CobD n=7 Tax=Halobacteriaceae RepID=B9LRL4_HALLT Length = 334 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 69/275 (25%), Gaps = 31/275 (11%) Query: 2 TLFTTLLVLIFER-LFKLGEHWQLDHRLEAFFRRVKH-FSLGRTLGMTIIAMGVT----- 54 +L T + + + L + + R +S R +G+ + Sbjct: 13 SLATLAIAVALDLALAEPPARVHPVALFGSVVGRFDRSWSRPRLVGVAVAVGLPIGVAAF 72 Query: 55 ---FLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG 111 + + F+ +LV I + + + + D A Sbjct: 73 AGGIVAAASFALPAFSALPVLVAGTILFTTVSLRMLLATTAEVVE-LTETDPDAARESVR 131 Query: 112 ELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWG-PVTLMGYAF--- 167 L +++A + ++APL +G T G V A Sbjct: 132 ALAGRDATD-LSPADLRSAAVESAAENLADG-FVAPLGGFALGATVGLAVGGSEVALPLA 189 Query: 168 -----------LRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEK 216 + L P + + ++P R+ ++ + Sbjct: 190 AGVAAAVWVKAVNTLDSMLGYRSKPVGW---ASARLDDAVMFLPARVTAGCLSVAAGSIE 246 Query: 217 ALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVD 251 AL + G + A +L Sbjct: 247 ALRWAASWAGKPGSPNSGWPMATAAAALDVRLEKP 281 >UniRef50_UPI0000383675 COG1270: Cobalamin biosynthesis protein CobD/CbiB n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000383675 Length = 202 Score = 50.3 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 44/159 (27%), Gaps = 10/159 (6%) Query: 12 FERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTL 71 R W + + A RR+ + ++A+ + + A VL + L Sbjct: 32 LYRALGHPVTW-IGRLIAALERRLNRGTPRARRLGGVLALLILLATVAAATLVLTAIAGL 90 Query: 72 LVWLLIGLLCI-------GAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCD 124 L L + +H A + A + + + + Sbjct: 91 AGHALGLLALAVLAASLPAQRSLFVHVRRVAAALRADGLVGGRR-AVSMIVGRNPESLDE 149 Query: 125 EREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLM 163 +++ + AP FW+ GG G Sbjct: 150 AAVCRAAIESLAENFSDGIV-APAFWIGAGGLTGGAHYR 187 >UniRef50_A6FEH0 Putative cobalamin biosynthesis protein n=1 Tax=Moritella sp. PE36 RepID=A6FEH0_9GAMM Length = 312 Score = 47.6 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 83/304 (27%), Gaps = 38/304 (12%) Query: 4 FTTLLVLIFERLFKLGEHWQ--------LDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTF 55 F L +I RL H+ + + G + + F Sbjct: 14 FILLTAIIIARLPLCPPHFHPTQLLNYLFSAIADKVNNAQRSPQQQYIAGHLAMITMLGF 73 Query: 56 LLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAG-ELT 114 +L+ A + ++ L++ L + KV L D + ++ + Sbjct: 74 ILIIAAVIQFIVIEAIIFELVLLLCLLQWEKVSLPEIDL------GDLEKQTIISQIQPR 127 Query: 115 MIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYW 174 + + + ++N L +++ + A +FW + G W + ++ + Sbjct: 128 TLRDLDQLSLLGLHKASIENMCLRNSYQ-WFAVIFWYVSLGIWPAIIYR---TIQLMAHN 183 Query: 175 LARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQ 234 +H+ ++L +L + + L +H Sbjct: 184 WNSKLPINHQFGRPAASLLQLLASPAHLILACTLRGLQRATSPLSNLTKQAKQWHHFSSG 243 Query: 235 VLTRLAQFSLARE-------------------PHVDKVETPKAAVSMAKKTSFVVVVVIA 275 L +SLA + + K A V + I Sbjct: 244 FLLSSFAYSLAIQLGGPRKYQGTMQRFSQLGHTEAAQRGDIKRAQQKLTLALLVWLCFIT 303 Query: 276 LLTI 279 + + Sbjct: 304 AIYL 307 >UniRef50_A4SP54 Cobalamin biosynthesis protein CbiB n=2 Tax=Aeromonas RepID=A4SP54_AERS4 Length = 307 Score = 41.5 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 48/198 (24%), Gaps = 12/198 (6%) Query: 6 TLLVLIFERLFKLGEHWQLDHRLEAFFR------RVKHFSLGRTLGMTIIAMGVTFLLLR 59 L ++ E + ++L + R R + + + V Sbjct: 9 LLGAVLLEAILPWPAQFRLSALVPLLTRLGHKVHRPDGSPQQQFRAGLLALLVVWLPCAA 68 Query: 60 ALQGV-LFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHG 118 L V ++ L LL LL I + +R A + AS+ A Sbjct: 69 GLWAVRNLSLSEPLFDLLFLLLMIESRPLRELAKATRSLASQETLVVARLQATPWL-RRD 127 Query: 119 VPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARY 178 + L + + PL + G G + + Sbjct: 128 TGKLSVMGIAKAVSETCALRLA-GQWAGPLLGFALAGVQGALLWRLAQL---MDQGWSPK 183 Query: 179 QTPHHRLQSGIDAVLHVL 196 Q + L Sbjct: 184 QVAFSHFGRAAAVLYQAL 201 >UniRef50_B7AB17 Cobalamin biosynthesis protein CobD n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AB17_THEAQ Length = 284 Score = 41.1 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 18/260 (6%), Positives = 46/260 (17%), Gaps = 27/260 (10%) Query: 19 GEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMG----VTFLLLRALQGVLFNVPTLLVW 74 + + + + ++ Sbjct: 17 PPRLHPVVWMGRYLE-WAWPRVRGFWSGAFYWTLGALLFALPAFLLDLLLRPLALGFVLL 75 Query: 75 LLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVPAGCDEREYLRELQN 134 L+ + L A R + + E L++ Sbjct: 76 GLLLKPLFSLRMLLLEVLWVERALEEGLEAGRRRL--SRIVSRRTDGLSQEEVREAALES 133 Query: 135 ALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLH 194 ++ L+ + G G A + ++ Sbjct: 134 LAENLSDSLLAPLLY-YALLGLGGAALYRYANTADAMWGYPEHGARGAFAARA-----DD 187 Query: 195 VLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAR-------- 246 +L+ +P RL G++ + + L Sbjct: 188 LLNLLPARLTGLLLCP----PRLWRRLLREARKTPSPNAGFPMAALALRLGVRLRKRGTY 243 Query: 247 --EPHVDKVETPKAAVSMAK 264 P A ++ Sbjct: 244 ALNPEAPSPGPGHVARALLW 263 >UniRef50_A3YE32 Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Marinomonas sp. MED121 RepID=A3YE32_9GAMM Length = 251 Score = 40.7 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 26/268 (9%) Query: 16 FKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRALQGVLFNVPTLLVWL 75 W D + +K G ++ + +L +Q +L + +L Sbjct: 7 IPTTSVWHNDEIISKINHVIKGRIEG-----LVLLFVMALILAYLMQWLLSDFVLILFEA 61 Query: 76 LIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELT-MIHGVPAGCDEREYLRELQN 134 L+ L G+ R++ D +L D + + +L++ Sbjct: 62 LLFLYLFQTGQQRVNVT-------NTDPDHYRANLIQLINKSQTDTELEDRGQPIEQLES 114 Query: 135 ALLWIN-FRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVL 193 + + ++ + L + + G + L+ + L Y+ P ++ + + Sbjct: 115 QVRTLVIHDYFKSTLVLVFLFLALGWLGLVLFVCL---------YKVPVNQFPAWFVWLK 165 Query: 194 HVLDWVPVRLA-GVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDK 252 +L+ +PV L AL G + L + + LA + A E D Sbjct: 166 KILE-IPVGLLGAFSVALAGRMDSVLNE-LSQWQPDLFVNGLQMFELALITGANEEQEDF 223 Query: 253 VETPKAAVSMAKKTSFVVVVVIALLTIY 280 + K ++ + ++V V V+AL++I Sbjct: 224 LTQLKDYQAICFRVTYVWVFVVALVSIS 251 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.146 0.384 Lambda K H 0.267 0.0445 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,424,976,270 Number of Sequences: 3077464 Number of extensions: 48040257 Number of successful extensions: 301853 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 311 Number of HSP's successfully gapped in prelim test: 287 Number of HSP's that attempted gapping in prelim test: 300009 Number of HSP's gapped (non-prelim): 893 length of query: 284 length of database: 1,040,396,356 effective HSP length: 127 effective length of query: 157 effective length of database: 649,558,428 effective search space: 101980673196 effective search space used: 101980673196 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.9 bits) S2: 92 (39.9 bits)