15/01/2012 07:45:32 : INFO  : Run start: Sun Jan 15 07:45:30 GMT 2012
15/01/2012 07:45:39 : INFO  : Initialised job
15/01/2012 07:45:41 : INFO  : Renaming log file 'phyre2_20120115_074529.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/806ffb3b4e4c7347/phyre_20120115_074529.log'
15/01/2012 07:45:43 : INFO  : Initialised job:
Sequence
>batch____
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSV
DDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIP
MQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRA
ALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLT
YRKFYNSRHQLVVTQLKKK

15/01/2012 07:45:44 : INFO  : Checked sequence
15/01/2012 07:45:48 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 07:45:50 : INFO  : PSI-BLAST 3 iterations
15/01/2012 07:47:28 : INFO  : PSI-BLAST 5 iterations
15/01/2012 07:48:48 : INFO  : Finished PSI-BLAST
15/01/2012 07:48:50 : INFO  : Running Buildali to generate a3m file
15/01/2012 07:55:48 : INFO  : Converting to HMM
15/01/2012 07:55:50 : INFO  : Calibrating HMM
15/01/2012 07:56:01 : INFO  : Searching HMM database
15/01/2012 08:00:36 : INFO  : Finished buildali
15/01/2012 08:00:38 : INFO  : Predicting secondary structure
15/01/2012 08:00:48 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 08:00:51 : INFO  : Predicting Disordered regions
15/01/2012 08:00:56 : INFO  : Predicted Disorder (Disopred)
15/01/2012 08:00:58 : INFO  : Running memsat_svm check
15/01/2012 08:03:11 : INFO  : Globular protein
15/01/2012 08:03:12 : INFO  : Predicted Transmembrane (memsat_svm) ID '806ffb3b4e4c7347'
15/01/2012 08:03:14 : INFO  : Initialising fold library search
15/01/2012 08:03:18 : INFO  : Initialised search input
15/01/2012 08:03:20 : INFO  : Building Ensemble models
15/01/2012 08:03:24 : INFO  : Building hh.c3k07A_.model.1.pdb
15/01/2012 08:03:40 : INFO  : Building hh.d3d31c1.model.2.pdb
15/01/2012 08:03:53 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/806ffb3b4e4c7347/hh.d3d31c1.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/806ffb3b4e4c7347/d3d31c1.2.pdb
15/01/2012 08:03:57 : INFO  : Building hh.c3d31D_.model.3.pdb
15/01/2012 08:04:09 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/806ffb3b4e4c7347/hh.c3d31D_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/806ffb3b4e4c7347/c3d31D_.3.pdb
15/01/2012 08:04:13 : INFO  : Building hh.d3dhwa1.model.4.pdb
15/01/2012 08:04:24 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/806ffb3b4e4c7347/hh.d3dhwa1.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/806ffb3b4e4c7347/d3dhwa1.4.pdb
15/01/2012 08:04:27 : INFO  : Building c3k07A_.1.pdb
15/01/2012 08:04:38 : INFO  : Building d3d31c1.2.pdb
15/01/2012 08:04:49 : INFO  : Building c3d31D_.3.pdb
15/01/2012 08:05:02 : INFO  : Building d3dhwa1.4.pdb
15/01/2012 08:05:13 : INFO  : Building c2r6gF_.5.pdb
15/01/2012 08:05:24 : INFO  : Building d2r6gf2.6.pdb
15/01/2012 08:05:37 : INFO  : Building c3fh6F_.7.pdb
15/01/2012 08:05:51 : INFO  : Building c2onkC_.8.pdb
15/01/2012 08:06:05 : INFO  : Building d2onkc1.9.pdb
15/01/2012 08:06:20 : INFO  : Building c3aqpB_.10.pdb
15/01/2012 08:06:36 : INFO  : Building d2r6gg1.11.pdb
15/01/2012 08:06:51 : INFO  : Building d1iwga8.12.pdb
15/01/2012 08:07:10 : INFO  : Building c2jobA_.13.pdb
15/01/2012 08:07:26 : INFO  : Building d2gy9p1.14.pdb
15/01/2012 08:07:41 : INFO  : Building d2uubp1.15.pdb
15/01/2012 08:07:56 : INFO  : Building d1cuka1.16.pdb
15/01/2012 08:08:11 : INFO  : Building d3bn0a1.17.pdb
15/01/2012 08:08:29 : INFO  : Building c2akcC_.18.pdb
15/01/2012 08:08:44 : INFO  : Building c3i5dC_.19.pdb
15/01/2012 08:09:00 : INFO  : Building c2amwA_.20.pdb
15/01/2012 08:10:32 : INFO  : Finished HH model building
15/01/2012 08:10:34 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 08:11:40 : INFO  : html domain output complete ID '806ffb3b4e4c7347'
15/01/2012 08:29:50 : INFO  : Run end  : Sun Jan 15 08:29:49 GMT 2012
