BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (150 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ADL5 Uncharacterized protein yicN n=99 Tax=Enterobact... 306 1e-82 UniRef50_C8Q3Z1 Putative inner membrane protein n=2 Tax=Enteroba... 157 8e-38 UniRef50_D0ZD34 Putative uncharacterized protein n=2 Tax=Edwards... 154 1e-36 UniRef50_A4TL42 Membrane protein n=36 Tax=Enterobacteriaceae Rep... 89 5e-17 >UniRef50_P0ADL5 Uncharacterized protein yicN n=99 Tax=Enterobacteriaceae RepID=YICN_ECO57 Length = 150 Score = 306 bits (784), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 150/150 (100%), Positives = 150/150 (100%) Query: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY Sbjct: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 Query: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR Sbjct: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 Query: 121 ETEPEMQDINAFQMRYNAFFQPAEGVHWLH 150 ETEPEMQDINAFQMRYNAFFQPAEGVHWLH Sbjct: 121 ETEPEMQDINAFQMRYNAFFQPAEGVHWLH 150 >UniRef50_C8Q3Z1 Putative inner membrane protein n=2 Tax=Enterobacteriaceae RepID=C8Q3Z1_9ENTR Length = 166 Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 77/143 (53%), Positives = 102/143 (71%) Query: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 MIW++LATL VVFVVGFR+LT+G+R A + LS RL + V VESM+ MGK A EF Y Sbjct: 1 MIWLILATLVVVFVVGFRLLTAGSRHAAQALSKRLQLPPVHVESMLSLMGKEAAKEFTDY 60 Query: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 + +E+HLQNAA VLLIWQ+ IVDG E N+ +WH+IL +A + IT Q+ LA+GFLR Sbjct: 61 ITGDNENHLQNAAAVLLIWQVCIVDGGEANMRRWHQILSRAHFSPMITPQQLLLAMGFLR 120 Query: 121 ETEPEMQDINAFQMRYNAFFQPA 143 E EP+ +++N + R+N F P Sbjct: 121 ELEPDREEMNMMRERFNGAFLPG 143 >UniRef50_D0ZD34 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=D0ZD34_EDWTE Length = 161 Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/142 (53%), Positives = 100/142 (70%) Query: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 MIW+MLATLA+VF+ GFRVL + R+A +RL+ RLNI+ V VES++ QMGK+ G+ F+RY Sbjct: 1 MIWLMLATLALVFIAGFRVLNTPTRRACQRLTQRLNIEPVHVESLLSQMGKTQGEAFVRY 60 Query: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 L ESHL N A VLLI+Q IV+G + NL W +L+KA A I QVRLAL FLR Sbjct: 61 LQCGGESHLNNGAIVLLIYQTFIVNGDDDNLRYWRSLLRKAGFNADINPHQVRLALDFLR 120 Query: 121 ETEPEMQDINAFQMRYNAFFQP 142 + EP+ ++ AF++ Y FF P Sbjct: 121 DLEPDTDEMLAFRLHYQQFFAP 142 >UniRef50_A4TL42 Membrane protein n=36 Tax=Enterobacteriaceae RepID=A4TL42_YERPP Length = 149 Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 78/146 (53%) Query: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 M WI++A L VVF+VG+RVLTS RKAI +S+ L I + +ESM+ +MG F+R Sbjct: 1 MTWIIIAVLIVVFIVGYRVLTSDTRKAIDTISNLLKIKPIYIESMLQEMGPRQTQMFIRS 60 Query: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 ++ AA ++ I+ I + S++N+ W L +A+++ + AL + Sbjct: 61 TSNGSAEEVRKAAYLVFIYHTFIKNPSDENVELWRNTLIRAQISPILAAEHTDAALFYFA 120 Query: 121 ETEPEMQDINAFQMRYNAFFQPAEGV 146 E + + ++ F+ YN F P G Sbjct: 121 ELDLDAFELAQFRRHYNLHFNPEPGT 146 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADL5 Uncharacterized protein yicN n=99 Tax=Enterobact... 229 2e-59 UniRef50_D0ZD34 Putative uncharacterized protein n=2 Tax=Edwards... 226 2e-58 UniRef50_C8Q3Z1 Putative inner membrane protein n=2 Tax=Enteroba... 220 1e-56 UniRef50_A4TL42 Membrane protein n=36 Tax=Enterobacteriaceae Rep... 215 3e-55 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0ADL5 Uncharacterized protein yicN n=99 Tax=Enterobacteriaceae RepID=YICN_ECO57 Length = 150 Score = 229 bits (585), Expect = 2e-59, Method: Composition-based stats. Identities = 150/150 (100%), Positives = 150/150 (100%) Query: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY Sbjct: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 Query: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR Sbjct: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 Query: 121 ETEPEMQDINAFQMRYNAFFQPAEGVHWLH 150 ETEPEMQDINAFQMRYNAFFQPAEGVHWLH Sbjct: 121 ETEPEMQDINAFQMRYNAFFQPAEGVHWLH 150 >UniRef50_D0ZD34 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=D0ZD34_EDWTE Length = 161 Score = 226 bits (576), Expect = 2e-58, Method: Composition-based stats. Identities = 76/143 (53%), Positives = 100/143 (69%) Query: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 MIW+MLATLA+VF+ GFRVL + R+A +RL+ RLNI+ V VES++ QMGK+ G+ F+RY Sbjct: 1 MIWLMLATLALVFIAGFRVLNTPTRRACQRLTQRLNIEPVHVESLLSQMGKTQGEAFVRY 60 Query: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 L ESHL N A VLLI+Q IV+G + NL W +L+KA A I QVRLAL FLR Sbjct: 61 LQCGGESHLNNGAIVLLIYQTFIVNGDDDNLRYWRSLLRKAGFNADINPHQVRLALDFLR 120 Query: 121 ETEPEMQDINAFQMRYNAFFQPA 143 + EP+ ++ AF++ Y FF P Sbjct: 121 DLEPDTDEMLAFRLHYQQFFAPQ 143 >UniRef50_C8Q3Z1 Putative inner membrane protein n=2 Tax=Enterobacteriaceae RepID=C8Q3Z1_9ENTR Length = 166 Score = 220 bits (560), Expect = 1e-56, Method: Composition-based stats. Identities = 77/143 (53%), Positives = 102/143 (71%) Query: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 MIW++LATL VVFVVGFR+LT+G+R A + LS RL + V VESM+ MGK A EF Y Sbjct: 1 MIWLILATLVVVFVVGFRLLTAGSRHAAQALSKRLQLPPVHVESMLSLMGKEAAKEFTDY 60 Query: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 + +E+HLQNAA VLLIWQ+ IVDG E N+ +WH+IL +A + IT Q+ LA+GFLR Sbjct: 61 ITGDNENHLQNAAAVLLIWQVCIVDGGEANMRRWHQILSRAHFSPMITPQQLLLAMGFLR 120 Query: 121 ETEPEMQDINAFQMRYNAFFQPA 143 E EP+ +++N + R+N F P Sbjct: 121 ELEPDREEMNMMRERFNGAFLPG 143 >UniRef50_A4TL42 Membrane protein n=36 Tax=Enterobacteriaceae RepID=A4TL42_YERPP Length = 149 Score = 215 bits (548), Expect = 3e-55, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 78/146 (53%) Query: 1 MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVESMVDQMGKSAGDEFLRY 60 M WI++A L VVF+VG+RVLTS RKAI +S+ L I + +ESM+ +MG F+R Sbjct: 1 MTWIIIAVLIVVFIVGYRVLTSDTRKAIDTISNLLKIKPIYIESMLQEMGPRQTQMFIRS 60 Query: 61 LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKARLAAPITDAQVRLALGFLR 120 ++ AA ++ I+ I + S++N+ W L +A+++ + AL + Sbjct: 61 TSNGSAEEVRKAAYLVFIYHTFIKNPSDENVELWRNTLIRAQISPILAAEHTDAALFYFA 120 Query: 121 ETEPEMQDINAFQMRYNAFFQPAEGV 146 E + + ++ F+ YN F P G Sbjct: 121 ELDLDAFELAQFRRHYNLHFNPEPGT 146 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.137 0.373 Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 553,209,655 Number of Sequences: 3077464 Number of extensions: 18611633 Number of successful extensions: 74268 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 74259 Number of HSP's gapped (non-prelim): 9 length of query: 150 length of database: 1,040,396,356 effective HSP length: 113 effective length of query: 37 effective length of database: 692,642,924 effective search space: 25627788188 effective search space used: 25627788188 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.9 bits) S2: 87 (38.1 bits)