12 c3q3qA_ Probab=94.77   E-value=0.33  Score=27.36  Aligned_columns=217  Identities=21%

Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHH---HHHC-CCCCC-CCCCHHHHHHHHH----------------
Q ss_conf             7766842799970214677777649878826877667---7514-55322-3220588988753----------------
Q batch____       230 ADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDI---EFKN-FNSAT-SYSGPAAIRLLRA----------------  288 (559)
Q Consensus       230 ~~~~~FDvlvL~ICSLSWdDl~~ag~~~hPl~~rFDi---vF~n-FNSAt-SYSGPAaiRlLRa----------------  288 (559)
                      +..++=-||+|-|=+|+||+|+.-+.+.-|-++|+-=   .|+| |.++. |-++|+--=++-|                
T Consensus         6 a~~~Pk~Vi~I~~D~l~~d~l~~~~~~~tP~l~rLa~~G~~f~~~~~~~~pt~t~Psrasl~TG~~P~~hGv~~n~~~~~   85 (526)
T c3q3qA_           6 AATPPKLIVAISVDQFSADLFSEYRQYYTGGLKRLTSEGAVFPRGYQSHAATETCPGHSTILTGSRPSRTGIIANNWFDL   85 (526)
T ss_dssp             TSSCCSEEEEEEETTCCHHHHHHHGGGCCSHHHHHHHHSEEEEEEECCSSCCSHHHHHHHHTTSCCHHHHCCCSSEEECT
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHCCCCCCCHHHHHHHCCCEECCEECCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCC
T ss_conf             20599729999837998789875176897138999985965712013899884777899988099824358446733254


Q ss_pred             ----------------CCCCCCCHHHHC-CCCCCCHHHHHHHHCCCCCEEHCCCCC------------------------
Q ss_conf             ----------------078977404313-653212568889864986000007687------------------------
Q batch____       289 ----------------SCGQTSHTNLYQ-PANNDCYLFDNLSKLGFTQHLMMGHNG------------------------  327 (559)
Q Consensus       289 ----------------SCGQ~~h~~Ly~-~a~~~C~LF~nL~~aGf~~~l~LNHDG------------------------  327 (559)
                                      ..+......-+. -.....-+++.|+.+|+.+...=-...                        
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (526)
T c3q3qA_          86 DAKREDKNLYCAEDESQPGSSSDKYEASPLHLKVPTLGGRMKAANPATRVVSVAGKDRAAIMMGGATADQVWWLGGPQGY  165 (526)
T ss_dssp             TCSSSCCEEETTBCTTSTTCBTTBCCBCSTTCCSCCHHHHHHHHCTTCCEEEEESSHHHHHHHHCTTCSEEEEECSTTCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             43444554444332244344456666566665678698988850885248845667654345455566744566766776


Q ss_pred             -------------CHHHHHHHHHHHCCCCCCCCCCCCCCHH--------------------HHCCCCCCCCCHHHHHHH-
Q ss_conf             -------------6224899998625878874466787220--------------------110277744352899999-
Q batch____       328 -------------QFGGFLKEVRENGGMQSELMDQTNLPVI--------------------LLGFDGSPVYDDTAVLNR-  373 (559)
Q Consensus       328 -------------~fd~Fl~~i~~~ggl~~pl~~~~~~~va--------------------~~aFDgSpVydD~~vL~r-  373 (559)
                                   ........-........+........-.                    ...+..+|.+++...-.. 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (526)
T c3q3qA_         166 VSYKGVAPTPLVTQVNQAFAQRLAQPNPGFELPAQCVSKDFPVQAGNRTVGTGRFARDAGDYKGFRISPEQDAMTLAFAA  245 (526)
T ss_dssp             ECSTTCCCCHHHHHHHHHHHHHHTSCBCCCCCCGGGGGGCCCEEETTEEESCCCCCBCTTCHHHHHSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf             34577777542101123345432244321001222243444300013334555544441011110236543024588889


Q ss_pred             -HHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             -9997850547875898611441577703686422214899999999999999999845990999995475633
Q batch____       374 -WLDVTEKDKNSRSATFYNTLPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGA  446 (559)
Q Consensus       374 -W~~~~~~~~~~~vA~yYNTIsLHDGNr~pg~~s~~sY~~R~~kll~D~d~F~~~le~SgR~~vvv~VPEHGAA  446 (559)
                       +++.+......+..+.+...+-.|...-.-..-...|.....++-+.+.++++.|++.|-+.+||++-.||.+
T Consensus       246 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~h~~~~~~~~~~~~i~~~D~~iG~il~~L~~~g~~T~vi~tSDHG~~  319 (526)
T c3q3qA_         246 AAIENMQLGKQAQTDIISIGLSATDYVGHTFGTEGTESCIQVDRLDTELGAFFDKLDKDGIDYVVVLTADHGGH  319 (526)
T ss_dssp             HHHHHTTTTSSSSCEEEEEEECHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSCCCC
T ss_pred             HHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             99877533555787179851677653330012220899999999999999999999967996299997888888