27/01/2012 09:15:09 : INFO  : Run start: Fri Jan 27 09:15:09 GMT 2012
27/01/2012 09:15:11 : INFO  : Initialised job
27/01/2012 09:15:12 : INFO  : Renaming log file 'phyre2_20120127_091508.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/7fdef948df9a1764/phyre_20120127_091508.log'
27/01/2012 09:15:13 : INFO  : Initialised job:
Sequence
>batch____
MTNPLLTPFELPPFSKILPEHVVPAVTKALNDCRENVERVVAQGAPYTWENLCQPLAEVD
DVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYKAYRDLRDGDHYA
TLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSELGNQYSNNVLDATMGWTKL
VTDEAELAGMPESALAAAKAQAEAKELEGYLLTLDIPSYLPVMTYCDNQALREEMYRAYS
TRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFENYAFKSLATKMAENPQQVLDFLTD
LAKRARPQGEKELAQLRAFAKAEFGVDELQPWDIAYYSEKQKQHLYSISDEQLRPYFPEN
KAVNGLFEVVKRIYGITAKERKDVDVWHPDVRFFELYDENNELRGSFYLDLYARENKRGG
AWMDDCVGQMRKADGSLQKPVAYLTCNFNRPVNGKPALFTHDEVITLFHEFGHGLHHMLT
RIETAGVSGISGVPWDAVELPSQFMENWCWEPEALAFISGHYETGEPLPKELLDKMLAAK
NYQAALFILRQLEFGLFDFRLHAEFRPDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFS
HIFAGGYAAGYYSYLWADVLAADAFSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFK
RFRGREPQLDAMLEHYGIKG

27/01/2012 09:15:13 : INFO  : Checked sequence
27/01/2012 09:15:15 : INFO  : Finding homologues with PSI-BLAST
27/01/2012 09:15:15 : INFO  : PSI-BLAST 3 iterations
27/01/2012 09:17:54 : INFO  : PSI-BLAST 5 iterations
27/01/2012 09:20:16 : INFO  : Finished PSI-BLAST
27/01/2012 09:20:17 : INFO  : Running Buildali to generate a3m file
27/01/2012 09:30:28 : INFO  : Converting to HMM
27/01/2012 09:30:34 : INFO  : Calibrating HMM
27/01/2012 09:30:54 : INFO  : Searching HMM database
27/01/2012 09:42:16 : INFO  : Finished buildali
27/01/2012 09:42:17 : INFO  : Predicting secondary structure
27/01/2012 09:42:21 : INFO  : Predicted secondary structure (PSI-Pred)
27/01/2012 09:42:21 : INFO  : Predicting Disordered regions
27/01/2012 09:42:23 : INFO  : Predicted Disorder (Disopred)
27/01/2012 09:42:26 : INFO  : Running memsat_svm check
27/01/2012 09:45:37 : INFO  : Running memsat_svm full
27/01/2012 09:56:25 : INFO  : Predicted Transmembrane (memsat_svm) ID '7fdef948df9a1764'
27/01/2012 09:56:27 : INFO  : Initialising fold library search
27/01/2012 09:56:29 : INFO  : Initialised search input
27/01/2012 09:56:31 : INFO  : Building Ensemble models
27/01/2012 09:56:33 : INFO  : Building hh.c1y791_.model.1.pdb
27/01/2012 09:56:44 : INFO  : Building hh.d1s4bp_.model.2.pdb
27/01/2012 09:56:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7fdef948df9a1764/hh.d1s4bp_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7fdef948df9a1764/d1s4bp_.2.pdb
27/01/2012 09:56:55 : INFO  : Building hh.d1i1ip_.model.3.pdb
27/01/2012 09:57:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7fdef948df9a1764/hh.d1i1ip_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7fdef948df9a1764/d1i1ip_.3.pdb
27/01/2012 09:57:05 : INFO  : Building c1y791_.1.pdb
27/01/2012 09:57:14 : INFO  : Building d1s4bp_.2.pdb
27/01/2012 09:57:25 : INFO  : Building d1i1ip_.3.pdb
27/01/2012 09:57:34 : INFO  : Building c3ce2A_.4.pdb
27/01/2012 09:57:44 : INFO  : Building c2h1jA_.5.pdb
27/01/2012 09:57:53 : INFO  : Building c3sksA_.6.pdb
27/01/2012 09:58:03 : INFO  : Building d2ajfa1.7.pdb
27/01/2012 09:58:12 : INFO  : Building d1uzea_.8.pdb
27/01/2012 09:58:22 : INFO  : Building c2c6nA_.9.pdb
27/01/2012 09:58:31 : INFO  : Building d1j36a_.10.pdb
27/01/2012 09:58:42 : INFO  : Building c2qr4B_.11.pdb
27/01/2012 09:58:52 : INFO  : Building d1k9xa_.12.pdb
27/01/2012 09:59:02 : INFO  : Building c1wgzC_.13.pdb
27/01/2012 09:59:12 : INFO  : Building c3dwcA_.14.pdb
27/01/2012 09:59:21 : INFO  : Building c3hq2A_.15.pdb
27/01/2012 09:59:33 : INFO  : Building d1g9ka2.16.pdb
27/01/2012 09:59:43 : INFO  : Building d1kapp2.17.pdb
27/01/2012 09:59:54 : INFO  : Building d1k7ia2.18.pdb
27/01/2012 10:00:03 : INFO  : Building d1qiba_.19.pdb
27/01/2012 10:00:11 : INFO  : Building d1y93a1.20.pdb
27/01/2012 10:01:04 : INFO  : Finished HH model building
27/01/2012 10:01:06 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
27/01/2012 10:02:02 : INFO  : html domain output complete ID '7fdef948df9a1764'
27/01/2012 15:44:44 : INFO  : Run end  : Fri Jan 27 15:44:41 GMT 2012
