Phyre 2 alignment of P27298 with d1l0oc_

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Job Description | P27298
Confidence | 36.33% | Date | Wed Jan 25 15:20:46 GMT 2012
Rank | 122 | Aligned Residues | 24
% Identity | 33% | Template | d1l0oc_
SCOP info | DNA/RNA-binding 3-helical bundle | Sigma3 and sigma4 domains of RNA polymerase sigma factors | Sigma4 domain
Resolution | 2.90

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 656 | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | M | D | L | F | K | R | F | R | G | R | E | P | Q | L | D | A | M | L | E | H | Y | G | I | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | D | E | L | S | K | T | R | G | R | A | P | T | V | T | E | I | A | D | H | L | G | I | S
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |  |  | T | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 122 | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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