283 c1vmaA_ Probab=98.16   E-value=1.9e-05  Score=51.60  Aligned_columns=156  Identities=17%

Q ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHH------CCCCEEECCCCC--------CCEEEEEEEEE---------------
Q ss_conf             7675205479997297789989999984------895132058788--------50525899997---------------
Q batch____         2 SIDKSYCGFIAIVGRPNVGKSTLLNKLL------GQKISITSRKAQ--------TTRHRIVGIHT---------------   52 (301)
Q Consensus         2 ~~~k~~~g~VaIiG~pNvGKSTLiN~L~------g~kva~vs~~~~--------TTr~~~~~~~~---------------   52 (301)
                      ...+.+...|+++|.++|||||.+-.|.      |.+++.++.-..        .+...+.++-.               
T Consensus        86 ~~~~~~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~gA~eQL~~~a~~~~v~~~~~~~~~~~~~~~~~  165 (294)
T c1vmaA_          86 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD  165 (294)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred             CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH
T ss_conf             23578966999980688760248999999999679948999758768647999999997619828974883698999999


Q ss_pred             ------ECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             ------299799999667855544202478888877876532---00001123333320456665554211798589999
Q batch____        53 ------EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD---VELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAV  123 (301)
Q Consensus        53 ------~~~~qi~~~DtPG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivVi  123 (301)
                            ..+..++++||||..............-........   .+.+..+.++....+............+.. -+++
T Consensus       166 ~~~~~~~~~~d~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~-~iIl  244 (294)
T c1vmaA_         166 AVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVT-GIIL  244 (294)
T ss_dssp             HHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCC-EEEE
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCC-EEEE
T ss_conf             999999779989998188898785799999999999963035668853999811468789999999996308997-6999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH
Q ss_conf             874565787779999999886089982999867899998999
Q batch____       124 NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTI  165 (301)
Q Consensus       124 NKiDl~~~~~~~~~~~~~~~~~~~~~~ii~vSA~~g~gId~L  165 (301)
                      ||.|-...-..........     ..|+..++  +|+++++|
T Consensus       245 TKlDe~~~~G~~l~~~~~~-----~~Pi~~i~--~Gq~v~Dl  279 (294)
T c1vmaA_         245 TKLDGTAKGGITLAIAREL-----GIPIKFIG--VGEKAEDL  279 (294)
T ss_dssp             ECGGGCSCTTHHHHHHHHH-----CCCEEEEE--CSSSGGGE
T ss_pred             ECCCCCCCHHHHHHHHHHH-----CCCEEEEE--CCCCCCCC
T ss_conf             7444788557999999985-----79889996--59984554