BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (375 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_C9Y1M6 Prophage lambda integrase n=26 Tax=root RepID=C9... 659 0.0 UniRef50_P27077 Integrase n=36 Tax=root RepID=VINT_BPP21 479 e-134 UniRef50_B2U001 Site-specific recombinase, phage integrase famil... 395 e-108 UniRef50_B5XR66 Site-specific recombinase, phage integrase famil... 357 5e-97 UniRef50_C8Q8H3 Lambda integrase n=1 Tax=Pantoea sp. At-9b RepID... 353 7e-96 UniRef50_B5YWJ6 Phage integrase family protein n=25 Tax=Enteroba... 348 1e-94 UniRef50_A6WME5 Phage integrase family protein n=1 Tax=Shewanell... 268 4e-70 UniRef50_Q88MN9 Phage integrase, putative n=7 Tax=Pseudomonas Re... 227 7e-58 UniRef50_P16407 Integrase n=20 Tax=root RepID=VINT_BPHK0 225 2e-57 UniRef50_C4TU56 Phage integrase n=1 Tax=Yersinia kristensenii AT... 204 3e-51 UniRef50_Q2NUH1 Phage integrase n=2 Tax=Sodalis glossinidius str... 203 7e-51 UniRef50_Q31HX1 Phage integrase n=1 Tax=Thiomicrospira crunogena... 200 8e-50 UniRef50_B4SVC2 Phage integrase n=42 Tax=Enterobacteriaceae RepI... 197 4e-49 UniRef50_A7FKY0 Integrase n=1 Tax=Yersinia pseudotuberculosis IP... 196 1e-48 UniRef50_P27078 Integrase n=23 Tax=root RepID=VINT_BP434 195 2e-48 UniRef50_D1S145 DNA integration/recombination/invertion protein ... 194 4e-48 UniRef50_D2TZP7 Phage integrase n=3 Tax=Arsenophonus nasoniae Re... 194 4e-48 UniRef50_Q2W5Y0 Integrase n=1 Tax=Magnetospirillum magneticum AM... 189 2e-46 UniRef50_B2Q6E8 Putative uncharacterized protein n=2 Tax=Provide... 189 2e-46 UniRef50_B4T7X0 Integrase n=14 Tax=Enterobacteriaceae RepID=B4T7... 184 5e-45 UniRef50_B4ESJ2 Integrase n=2 Tax=Proteus mirabilis RepID=B4ESJ2... 171 4e-41 UniRef50_C6USQ2 Integrase n=3 Tax=Escherichia coli O157:H7 RepID... 167 7e-40 UniRef50_C4I537 Bacteriophage lambda integrase, N-domain family ... 167 7e-40 UniRef50_C5CJJ9 Integrase family protein n=1 Tax=Variovorax para... 159 1e-37 UniRef50_D0L1C6 Lambda integrase n=1 Tax=Halothiobacillus neapol... 152 2e-35 UniRef50_A1JLQ1 Phage integrase n=7 Tax=Yersinia RepID=A1JLQ1_YERE8 151 3e-35 UniRef50_C5BBQ8 Integrase n=3 Tax=Edwardsiella RepID=C5BBQ8_EDWI9 150 9e-35 UniRef50_C4SF49 Integrase n=1 Tax=Yersinia mollaretii ATCC 43969... 146 1e-33 UniRef50_Q2W5Z6 Integrase n=1 Tax=Magnetospirillum magneticum AM... 143 9e-33 UniRef50_B7V4V5 Phage integrase, putative n=2 Tax=Pseudomonas Re... 137 6e-31 UniRef50_B2TUZ8 Phage integrase n=4 Tax=Shigella RepID=B2TUZ8_SHIB3 128 3e-28 UniRef50_B2JXK0 Putative uncharacterized protein n=1 Tax=Burkhol... 115 2e-24 UniRef50_Q1LEK8 Phage integrase n=4 Tax=Burkholderiaceae RepID=Q... 90 1e-16 UniRef50_Q2SDK0 Integrase n=1 Tax=Hahella chejuensis KCTC 2396 R... 86 2e-15 UniRef50_C0AVY7 Putative uncharacterized protein n=1 Tax=Proteus... 75 6e-12 UniRef50_D2U4J7 Phage integrase n=5 Tax=Gammaproteobacteria RepI... 74 1e-11 UniRef50_C8Q741 Integrase n=1 Tax=Pantoea sp. At-9b RepID=C8Q741... 72 3e-11 UniRef50_A5W814 Phage integrase family protein n=4 Tax=Proteobac... 70 2e-10 UniRef50_Q5R0D1 Integrase n=2 Tax=Alteromonadales RepID=Q5R0D1_I... 67 1e-09 UniRef50_C2I7M1 Integrase n=1 Tax=Vibrio cholerae TM 11079-80 Re... 65 4e-09 UniRef50_Q48JR5 Putative uncharacterized protein n=4 Tax=Pseudom... 63 2e-08 UniRef50_UPI00016AAE5A phage integrase family protein n=2 Tax=Bu... 63 2e-08 UniRef50_Q2W3R2 Integrase n=1 Tax=Magnetospirillum magneticum AM... 58 4e-07 UniRef50_Q8DFY9 DNA-directed RNA polymerase, beta subunit/140 kD... 58 6e-07 UniRef50_A4EPH1 Integrase n=2 Tax=Rhodobacteraceae RepID=A4EPH1_... 53 2e-05 UniRef50_A8ZYY4 Integrase family protein n=1 Tax=Desulfococcus o... 52 4e-05 UniRef50_A7JSJ8 Possible integrase/recombinase n=2 Tax=Mannheimi... 49 2e-04 UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q... 49 2e-04 UniRef50_C3MAV8 DNA integration/recombination/invertion protein ... 49 3e-04 UniRef50_A9MNF9 Putative uncharacterized protein n=1 Tax=Salmone... 49 3e-04 UniRef50_C0DS64 Putative uncharacterized protein n=1 Tax=Eikenel... 48 5e-04 UniRef50_B8K7Z4 Integrase n=2 Tax=Vibrio RepID=B8K7Z4_VIBPA 48 7e-04 UniRef50_C0X0P7 Phage integrase family site specific recombinase... 48 7e-04 UniRef50_UPI00016AE785 Phage integrase:Phage integrase, N-termin... 48 7e-04 UniRef50_B0VK72 Integrase n=1 Tax=Azospirillum phage Cd RepID=B0... 47 8e-04 UniRef50_D2YQV3 Phage integrase family protein n=2 Tax=Vibrio Re... 47 0.001 UniRef50_B2UKS9 Integrase family protein n=1 Tax=Akkermansia muc... 47 0.001 UniRef50_C7DB29 Phage integrase family protein n=1 Tax=Thalassio... 47 0.001 UniRef50_A9C3M6 Integrase family protein n=1 Tax=Delftia acidovo... 47 0.001 UniRef50_Q396R9 Putative uncharacterized protein n=1 Tax=Burkhol... 46 0.002 UniRef50_Q0RYV8 Probable integrase/recombinase n=1 Tax=Rhodococc... 46 0.002 UniRef50_A6T076 Phage-related integrase n=2 Tax=Burkholderiales ... 46 0.002 UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Bu... 46 0.002 UniRef50_Q88G06 Phage integrase, putative n=12 Tax=Gammaproteoba... 46 0.003 UniRef50_A1B9G7 Phage integrase family protein n=3 Tax=Rhodobact... 45 0.003 UniRef50_B9JWL0 Phage-related integrase n=1 Tax=Agrobacterium vi... 45 0.004 UniRef50_B7V6G8 Integrase n=5 Tax=root RepID=B7V6G8_PSEA8 45 0.004 UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadec... 45 0.005 UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanell... 44 0.008 UniRef50_Q5P749 Similar to phage-related integrase n=3 Tax=Bacte... 44 0.010 UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2... 44 0.011 UniRef50_A5KPC6 Putative uncharacterized protein n=3 Tax=Clostri... 44 0.012 UniRef50_C9PR11 Putative uncharacterized protein n=1 Tax=Pasteur... 44 0.013 UniRef50_A3VAJ4 Site-specific recombinase, phage integrase famil... 43 0.016 UniRef50_B9QS39 Site-specific recombinase, phage integrase famil... 43 0.017 UniRef50_C5A9R6 Phage integrase:Phage integrase, N-terminal SAM-... 43 0.018 UniRef50_UPI0000383FB1 COG0582: Integrase n=1 Tax=Magnetospirill... 43 0.020 UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5... 42 0.027 UniRef50_A5ELA9 Putative phage-like integrase n=1 Tax=Bradyrhizo... 42 0.028 UniRef50_C9LR41 Toxin-antitoxin system, toxin component, PIN fam... 42 0.028 UniRef50_A3D8Y1 Phage integrase family protein n=4 Tax=Shewanell... 42 0.030 UniRef50_Q9PD24 Phage-related protein n=2 Tax=Xylella fastidiosa... 42 0.030 UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsu... 42 0.031 UniRef50_B0K9M1 Phage integrase family protein n=18 Tax=Clostrid... 42 0.038 UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio... 42 0.047 UniRef50_B5YSQ6 Site-specific recombinase, phage integrase famil... 42 0.052 UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacte... 41 0.069 UniRef50_A7XXG4 Phage XerD-like integrase n=2 Tax=unclassified S... 41 0.081 UniRef50_Q2NTS7 Phage integrase n=25 Tax=Enterobacteriaceae RepI... 40 0.099 >UniRef50_C9Y1M6 Prophage lambda integrase n=26 Tax=root RepID=C9Y1M6_CROTZ Length = 382 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/375 (84%), Positives = 356/375 (94%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPRKNNV VPNLYPLYSRKVNKVYWRYKHP+TGKFH+LGTNEAEAIAIATEAN+RLA Sbjct: 1 MAARPRKNNVKVPNLYPLYSRKVNKVYWRYKHPITGKFHSLGTNEAEAIAIATEANSRLA 60 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 EQ+TRQILA+SDRIATSKGKAITT TWL+RY IQ++RLKSGDIR NT+KQKAKPVSLLR Sbjct: 61 EQQTRQILALSDRIATSKGKAITTITWLERYWKIQEERLKSGDIRQNTFKQKAKPVSLLR 120 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 ER GMKLISAVDVRDIAQ+LD+YIAAG+PRMAQV+RSVLID+FKEAQH+GEVPPGYNPAL Sbjct: 121 ERVGMKLISAVDVRDIAQILDDYIAAGQPRMAQVIRSVLIDIFKEAQHFGEVPPGYNPAL 180 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 ATKQPRR+I RQRLSLEEW+KIFDIADATHRYMGNAMLLALVTGQRLGDIS MKF+DIWD Sbjct: 181 ATKQPRRRINRQRLSLEEWQKIFDIADATHRYMGNAMLLALVTGQRLGDISNMKFADIWD 240 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 DHLHV+QEKTGSK+AIPLSLRL+AI W+LRDV+ARCRDYAVS +L+HFFR+TS AERGAQ Sbjct: 241 DHLHVVQEKTGSKLAIPLSLRLDAIGWNLRDVIARCRDYAVSPFLIHFFRATSMAERGAQ 300 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTD 360 VK+NT+TMNFSKARD A I WG+G+PATFHEQRSL+ERLY +QG+DTQ+LLGHK+ QQT Sbjct: 301 VKSNTITMNFSKARDKAEIHWGDGTPATFHEQRSLAERLYGDQGVDTQRLLGHKSPQQTA 360 Query: 361 RYHDDRGKGWSKVAL 375 RYHD+RGK W+ +AL Sbjct: 361 RYHDNRGKDWNYIAL 375 >UniRef50_P27077 Integrase n=36 Tax=root RepID=VINT_BPP21 Length = 380 Score = 479 bits (1233), Expect = e-134, Method: Compositional matrix adjust. Identities = 223/372 (59%), Positives = 287/372 (77%), Gaps = 2/372 (0%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPR + +S+PNLY ++ KVYW+YKHP++G+FH+LGT+E EA +ATEANT +A Sbjct: 1 MAARPRSHKISIPNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIA 60 Query: 61 EQRTRQILAISDRIATSKGK--AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 EQRTRQIL++++R+ KG+ IT + WLD+Y +IQ+DRL+ ++R N+Y+QK KP+ L Sbjct: 61 EQRTRQILSVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRL 120 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 RE GM+ + + DIA+++D A G RMAQVVR VLIDVFKEAQH G VPPG+NP Sbjct: 121 FREHCGMQHLKDITALDIAEIIDAVKAEGHNRMAQVVRMVLIDVFKEAQHAGHVPPGFNP 180 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 A ATKQPR ++ RQRLSL EW+ IF+ Y+ MLLALVTGQRLGDI +KFSDI Sbjct: 181 AQATKQPRNRVNRQRLSLLEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDI 240 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 WDD LH+ QEKTGSK+AIPL+L+ +A+N +LR+V+++CRD VS YLVH+ +TSQA RG Sbjct: 241 WDDMLHITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRG 300 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQ 358 QV ANTLT F KA++ I W +G+ TFHEQRSLSERLY+EQGLDTQKLLGHK+++ Sbjct: 301 DQVSANTLTTAFKKAKEKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKM 360 Query: 359 TDRYHDDRGKGW 370 TDRY+DDRGK W Sbjct: 361 TDRYNDDRGKDW 372 >UniRef50_B2U001 Site-specific recombinase, phage integrase family n=32 Tax=Enterobacteriaceae RepID=B2U001_SHIB3 Length = 376 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/375 (49%), Positives = 266/375 (70%), Gaps = 2/375 (0%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGT-NEAEAIAIATEANTRLAE 61 ARPRK VP L P + ++ NKVYWRY+HP+TGK H LG+ ++ A IA EAN+RLA Sbjct: 2 ARPRKYKTDVPGLSPYFDKRNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLAR 61 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 Q+ Q+L++ ++I + G + T + +L+ Y+ IQ +R ++G+I+LNT KQKA P+ + E Sbjct: 62 QQMEQMLSLQEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDE 121 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 R G + + A+ V+D+ +L+EY A G RM Q+ R VLIDVF+EAQ G+VPPG+NPA + Sbjct: 122 RFGTRRLDAITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAES 181 Query: 182 TKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 K+P+ +I+RQRL+ +EW I++ A+ ++ MLLAL+TGQRL DI +M+FSDI D Sbjct: 182 AKKPQVRISRQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDG 241 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 +LHV Q+KTG++IAIPL+LR + +N +L DVV+ CRD +S +L+H + A+RG V Sbjct: 242 YLHVEQQKTGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAKRGGMV 301 Query: 302 KANTLTMNFSKARDLARIDW-GEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTD 360 K TLT+ F KARD +W G+P +FHEQRSLSERL++EQG+DT+ LLGH Q+ TD Sbjct: 302 KPATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKILLGHSNQKMTD 361 Query: 361 RYHDDRGKGWSKVAL 375 Y+D RGK W K+ + Sbjct: 362 IYNDARGKEWKKLVI 376 >UniRef50_B5XR66 Site-specific recombinase, phage integrase family n=1 Tax=Klebsiella pneumoniae 342 RepID=B5XR66_KLEP3 Length = 379 Score = 357 bits (915), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 183/378 (48%), Positives = 252/378 (66%), Gaps = 6/378 (1%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPR + V++PNLY ++ +K YW+Y+HP+TG+F GT++ A ATE N LA Sbjct: 1 MAARPRDHKVNIPNLYCKLDKRNSKTYWQYRHPLTGQFIGFGTDQDAASQAATELNRLLA 60 Query: 61 EQRTRQILAISDRIATSK---GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 +Q T Q A+ D + K K+I W+DRY IQ +RL +I+LNT K + V Sbjct: 61 QQETAQSFALIDMVNHKKVNSKKSIRMRVWIDRYLKIQVERLSDNEIKLNTLKSRKTCVG 120 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 +L +R I V + +A + DEY A G+ RMAQ +RSV ID+F+EAQH GEV PGYN Sbjct: 121 VLAQRLPDVGIQEVTTKMLAAITDEYKAKGKARMAQTLRSVWIDLFREAQHAGEVEPGYN 180 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 PALAT++ ++ R RL+ E W+ IF+ A Y+ N+MLLA+VTGQR GD+++MKFSD Sbjct: 181 PALATRKVVARVNRSRLNFEMWQAIFEAASDMAPYVQNSMLLAIVTGQRRGDLAKMKFSD 240 Query: 238 IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 +WD +LHV Q KTG K+AIPLSLR ++ SL V+ RCRD VS +L+H S+ + + Sbjct: 241 VWDGYLHVKQLKTGVKLAIPLSLRSEVLDISLAQVIKRCRDRIVSPWLLHHVTSSGKVKA 300 Query: 298 GAQVKANTLTMNFSKARDLAR--IDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKT 355 G QV N+L+++F A D I+ G+ P TFHEQRSLSERLY+ QG++TQ+LLGH + Sbjct: 301 GDQVGENSLSVSFKLAVDSTNLSIERGKTMP-TFHEQRSLSERLYEAQGINTQQLLGHSS 359 Query: 356 QQQTDRYHDDRGKGWSKV 373 ++ T +YH+DRG W KV Sbjct: 360 EKMTAQYHNDRGLDWVKV 377 >UniRef50_C8Q8H3 Lambda integrase n=1 Tax=Pantoea sp. At-9b RepID=C8Q8H3_9ENTR Length = 380 Score = 353 bits (905), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 179/381 (46%), Positives = 261/381 (68%), Gaps = 7/381 (1%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPR++NV++PNLY ++ +KVYW+Y+HPVT +F GT+E A A EAN ++ Sbjct: 1 MAARPRRHNVTIPNLYCKLDKRTSKVYWQYRHPVTNQFIGFGTDEDAAKEAAIEANRIIS 60 Query: 61 EQRTRQILAISDRIATSKGKAITTS----TWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 +Q+T+QI + D +A K +TT +W++ Y+ I ++R++SG+I +T K K Sbjct: 61 QQQTKQITILVD-MALKKEAKLTTGMRLFSWIEIYEKICNERIESGEIAKSTGKALVKSA 119 Query: 117 SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 +L +R + +D + +A ++DEY + G+ RMAQ +R+ ID+FKEAQH GEV GY Sbjct: 120 KILEKRLPNVRLRNIDTKALASIIDEYKSEGKNRMAQFLRANWIDMFKEAQHSGEVDQGY 179 Query: 177 NPALATKQPRRKITRQRLSLEEWKKIFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKF 235 NPALAT++ K+ R RLS +EW+KI++ A T N+MLLAL+TGQR DI++MKF Sbjct: 180 NPALATRKVHAKVKRARLSFDEWQKIYEAAKNTLAPAASNSMLLALITGQRRTDIAKMKF 239 Query: 236 SDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 SD+WDDHLH+ Q KTG+KIA+PLSLR NA+ SL + +A CRD +S Y++H R+ Sbjct: 240 SDVWDDHLHIEQSKTGAKIALPLSLRCNALGMSLGEAIAICRDRVLSPYMIHHVRNNRGK 299 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWG-EGSPATFHEQRSLSERLYKEQGLDTQKLLGHK 354 + G + ++L+ FS+AR A ++ + +P +FHEQRSLSERLY+ QG++TQ LLGHK Sbjct: 300 KPGDPIWEDSLSRYFSEARISAGVNPDKDQTPPSFHEQRSLSERLYRAQGINTQLLLGHK 359 Query: 355 TQQQTDRYHDDRGKGWSKVAL 375 + TD+Y+DDRG W K+AL Sbjct: 360 SIAMTDKYNDDRGADWKKLAL 380 >UniRef50_B5YWJ6 Phage integrase family protein n=25 Tax=Enterobacteriaceae RepID=B5YWJ6_ECO5E Length = 372 Score = 348 bits (894), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 177/377 (46%), Positives = 253/377 (67%), Gaps = 7/377 (1%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M+ RPRKN+ V LY + R+ +VY++YK+PVTGKFH LGT++ +A IA+ AN R+A Sbjct: 1 MSPRPRKNSTDVAGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIA 60 Query: 61 EQRTRQIL-AISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + I + + +K + I W+DRY IQD RLK+GDI T+K+K + + L Sbjct: 61 AAEAEYFMRKIDESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYL 120 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 R G + ++VRD A +LDE++ A+V R + +D++KEAQH GEVPPG+NP Sbjct: 121 VSRLGNHPLKELEVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPP 180 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 AT++P K+TR RL++E+W+KI++ H ++ NAMLLA+VTGQR DI M+FSD+W Sbjct: 181 EATRKPIPKVTRARLTMEDWQKIYNATPEKH-FIRNAMLLAIVTGQRRDDICHMRFSDVW 239 Query: 240 DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 ++HLH+ Q KTG ++A+PL+LR +AI +L++V+ CRD +S YL+H S Q + Sbjct: 240 NEHLHITQGKTGMRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIH---SRHQKQPKP 296 Query: 300 QVKANTLTMNFSKARDLARIDWGEG-SPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQ 358 K N L+ F+KARDLA + G +P TFHEQRSLSERLY+ QG+DT+ LLGHK Q Sbjct: 297 MSKDN-LSDYFAKARDLAGVIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTLLGHKVQAT 355 Query: 359 TDRYHDDRGKGWSKVAL 375 TDRY+D RG+ W K+ + Sbjct: 356 TDRYNDTRGQEWVKLVI 372 >UniRef50_A6WME5 Phage integrase family protein n=1 Tax=Shewanella baltica OS185 RepID=A6WME5_SHEB8 Length = 394 Score = 268 bits (684), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 158/402 (39%), Positives = 222/402 (55%), Gaps = 35/402 (8%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPRK ++ V NLY + +VY++Y+ P G F LG + A A+ N +A Sbjct: 1 MAARPRKFDLGVENLYCRQDARNGEVYYQYRDPRNGAFRGLGKDRTIAKERASALNLLIA 60 Query: 61 EQRTRQIL----AISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 +Q + A +R+A I W+++Y AIQ DRL +G+IRLNT+K + Sbjct: 61 QQLASAFIDNYNARPERVAQH---GIAFKKWVEKYIAIQGDRLNNGEIRLNTFKTRKSQA 117 Query: 117 SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 ++ + G + + +D +L+ A G+ R AQ VRSVLID+FKEA GE+ G+ Sbjct: 118 TIAIKAMGNIPLKDISTKDCYELMQSLRAQGKERTAQAVRSVLIDIFKEAAQAGEITGGF 177 Query: 177 NPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF- 235 NPA ATK PR + R RL LE K+I +A+ ++ N +LLALVTGQR DI+ M+F Sbjct: 178 NPASATKSPRVNVVRDRLELEAVKQILAVAETKEPWVKNTILLALVTGQRRVDIANMQFK 237 Query: 236 ----------------------SDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVV 273 S + + LHV Q+KT + + +PL L+L A++ S+ +VV Sbjct: 238 KGNDWEKLYQNWKTGNRSKPPYSYVEGEWLHVFQQKTSTMLKLPLGLKLEALDLSIGNVV 297 Query: 274 ARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR 333 CR VS YL+H A G QV +T+T FS+ RD + G S TFHE R Sbjct: 298 LSCRSRCVSKYLIHHQHGIRGATIGGQVFVDTITKRFSECRD----ELGP-STTTFHELR 352 Query: 334 SLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 SLSERLY QG+DTQ LLGHK + T YHD RG+ W ++ + Sbjct: 353 SLSERLYSGQGIDTQILLGHKDPRTTAAYHDIRGQMWIELVI 394 >UniRef50_Q88MN9 Phage integrase, putative n=7 Tax=Pseudomonas RepID=Q88MN9_PSEPK Length = 368 Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 149/388 (38%), Positives = 212/388 (54%), Gaps = 34/388 (8%) Query: 1 MAARPRKNNVS--VPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTR 58 MA RPR PNLY ++ Y+ Y+ PV+ + LG+++A+AIA A AN Sbjct: 1 MAPRPRNPGSKDLPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMA 60 Query: 59 LAEQRTRQIL--AISDRIATSKGKAITT-STWLDRYQAIQDDR------LKSGDIRLNTY 109 L Q+ +S RIA S W+ Y A DR +++ +RLN Sbjct: 61 L------QVAPPTLSARIAPEPSAPDRKFSEWIVEYFADLKDRELSESSMRNLRMRLNRV 114 Query: 110 KQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHY 169 ++ G + I + DIA L Y+ G+ +MA+ +RS+L D+F A Sbjct: 115 EKAF----------GERGIRTLTTMDIADYLSTYVKEGKAQMARAMRSLLRDLFMGAMAR 164 Query: 170 GEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGD 229 G V YNP ATK R KI RQRL+LE WK I++ +A ++ AM LAL+TGQR D Sbjct: 165 GWV--DYNPVEATKAARVKIKRQRLTLELWKAIYE--EAAQPWLKRAMELALITGQRRED 220 Query: 230 ISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 I+ F D D L V+Q KTG+++ I S+ L I+ SL +V+ RCRD +S +LVH Sbjct: 221 IASFVFRDEVDGFLQVVQSKTGARLRISTSVTLECISLSLGEVIRRCRDRVLSKHLVHHH 280 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLARIDWG---EGSPATFHEQRSLSERLYKEQGLD 346 R+ S+A+ G+ + +T++ F+ ARD A + G SP TFHEQRSL+ RL+ E+G D Sbjct: 281 RTISRAKAGSPIMLDTISKEFAAARDRAAVKLGLDLGASPPTFHEQRSLAARLHDEEGRD 340 Query: 347 TQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 Q+LLGH++ + TD Y D RG W VA Sbjct: 341 AQRLLGHRSAKMTDLYRDSRGAEWIDVA 368 >UniRef50_P16407 Integrase n=20 Tax=root RepID=VINT_BPHK0 Length = 357 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 211/366 (57%), Gaps = 27/366 (7%) Query: 13 PNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD 72 PNLY N Y+ Y+ P TGK LG + AI A +AN L R+ L D Sbjct: 14 PNLYIR-----NNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGNRRESLI--D 66 Query: 73 RIATSKG-KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAV 131 RI KG AIT WLDRY+ I +R IR T A + +R + K ++ + Sbjct: 67 RI---KGADAITLHAWLDRYETILSER----GIRPKTLLDYASKIRAIRRKLPDKPLADI 119 Query: 132 DVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 +++A +L+ Y+A G+ A+++RS L+DVF+EA G V NP AT+ + ++ R Sbjct: 120 STKEVAAMLNTYVAEGKSASAKLIRSTLVDVFREAIAEGHV--ATNPVTATRTAKSEVRR 177 Query: 192 QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTG 251 RL+ E+ I+ A+ ++ AM LA+VTGQR+GD+ RMK+SDI D+HLH+ Q KTG Sbjct: 178 SRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTG 237 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 +K+AIPL+L ++A+N SL D + +CR+ + S ++ ++ + T++ F+ Sbjct: 238 AKLAIPLTLTIDALNISLADTLQQCREASSSETII-------ASKHHDPLSPKTVSKYFT 290 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTDRYHDDRGKG 369 KAR+ + + + +G+P TFHE RSLS RLY+ Q D Q+LLGHK+ RY D RG+ Sbjct: 291 KARNASGLSF-DGNPPTFHELRSLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349 Query: 370 WSKVAL 375 W K+ + Sbjct: 350 WDKIEI 355 >UniRef50_C4TU56 Phage integrase n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TU56_YERKR Length = 360 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 139/375 (37%), Positives = 216/375 (57%), Gaps = 23/375 (6%) Query: 1 MAARPRKNNVSVP-NLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTR 58 M RP K + ++P NL SRK YWR +P+ GK ALG + +AIA A EAN Sbjct: 1 MKKRPAKYDANLPRNLTYRKSRK--SFYWR--NPLNGKEIALGQISRRDAIAQAIEANHY 56 Query: 59 LAEQRTRQILAISDRIATSKG-KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 + ++ +A+ +++ KG T WL+RY+ I L+ + NTYK +A ++ Sbjct: 57 I--EKNYSPIALLEQL---KGVHEYTMDNWLERYEII----LQRRKLAANTYKVRAGHIN 107 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 +R++ K++S + DIA+ L+ ++ G+ MA +RSVL DVF+EA G + N Sbjct: 108 TIRDKFADKVLSKITTLDIAEFLESWVEQGKAAMAGTLRSVLSDVFREAIVAGRIE--VN 165 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 P T+ P+ + R+RL E++ I + A+ + +M LALVTGQR D+ +MKF D Sbjct: 166 PVTPTRAPKITVMRERLEYEQYIAIRNAAEQQPAWFALSMDLALVTGQRREDVVKMKFID 225 Query: 238 IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 + D+ L++ Q KTG+ IAIPL+L L ++ SL +++ RCR + + +L+ + Sbjct: 226 VRDNRLYIEQTKTGAMIAIPLTLTLKSVGLSLSNIIDRCRQVSRTDFLIS--SGIRKNSP 283 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLY-KEQGLD-TQKLLGHKT 355 + + LT F KAR + + + SP +FHE RSLS RLY KE G + T+KLLGHK+ Sbjct: 284 DGSIHPDGLTKGFVKARRYSGLSFSH-SPPSFHEIRSLSGRLYEKEYGKEFTRKLLGHKS 342 Query: 356 QQQTDRYHDDRGKGW 370 ++ TD+Y D RGK + Sbjct: 343 EKMTDKYLDTRGKEY 357 >UniRef50_Q2NUH1 Phage integrase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NUH1_SODGM Length = 355 Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 204/372 (54%), Gaps = 24/372 (6%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 R KN PNL P +N Y+ Y+ P TGK + LG N EAI A AN + Sbjct: 5 RSHKNRDLPPNLQP-----INGGYFCYRDPRTGKEYGLGRNRREAITQAIAANMAIYGSS 59 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 + L DRI+ ++ A T S W RY I + R ++ T + K + + E Sbjct: 60 KQSPLV--DRISGTQ--ATTVSEWTTRYLTILEGR----KLKPKTMTEHRKYLKAINEHL 111 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 G I V +D+A L+ ++ AG+ MA +R +ID+F+EA G V +NPA AT+ Sbjct: 112 GEFAIQQVQTKDVAAFLNLWVKAGKETMANKLRKEVIDLFREAIADGIV--SHNPAEATR 169 Query: 184 QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 R +I R+R++LEEWK I IA+ ++G+ + LALVTGQRLGDI + + + D L Sbjct: 170 NQRVEIQRERITLEEWKVIRKIAEKLPAWVGSCLDLALVTGQRLGDIQALLWENFKDGRL 229 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 ++ Q KTG +A R++ +N L DV+++ + A+++ H + Q A Sbjct: 230 YIKQAKTGMMLAFSAVTRIDCLNLCLADVLSQFK--ALNSTGSHIVADSKH----EQFAA 283 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYK-EQGLD-TQKLLGHKTQQQTDR 361 T++ F KAR ++ + W +G P +FHE RSL+ RLY E+G D QKLLGHK+ + TD+ Sbjct: 284 KTISAAFLKARRVSGLTW-QGDPPSFHEIRSLAARLYTDEKGRDYAQKLLGHKSSEMTDK 342 Query: 362 YHDDRGKGWSKV 373 Y D RG W+++ Sbjct: 343 YRDVRGSEWAEI 354 >UniRef50_Q31HX1 Phage integrase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HX1_THICR Length = 372 Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 131/383 (34%), Positives = 209/383 (54%), Gaps = 31/383 (8%) Query: 5 PRKNNVSV---PNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAI--AIATEANTRL 59 P+ +S+ PNLY ++ KVY++YK P+ GKF++ GT++ +A+ A+A N Sbjct: 3 PKAREISLGLPPNLYAKKDKRNGKVYYQYKSPLDGKFYSFGTDKNQAVNDAVALNHNIYD 62 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 A Q++R K K + D +Q I D + ++ NT K + Sbjct: 63 AIQKSR----------VEKLKKPACILFRDFWQ-IYFDSMNDRKLKPNTIKTRKSQYEAC 111 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 G ++ V V+D+A +++ YI + R A +RS L D FKEA H G V NPA Sbjct: 112 YPFIGNTPLNEVRVKDVADIINHYIEQDKRRTASAIRSTLKDAFKEAIHQGIVED--NPA 169 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 T+ P + RQR +L++ K+ +I T ++ NA+LLAL+TGQR+ DI++MKF D Sbjct: 170 EKTRAPSVPVKRQRFNLDQVLKVLEINKET--WLENAILLALITGQRVSDIAKMKFKDFD 227 Query: 240 DDHLHVIQEKT-----GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 ++L+VIQ+K + ++L+A++ +L D++ +CRD +S +LVH ++ Sbjct: 228 GEYLYVIQKKNRQGAPEKRYKYHKDIKLDALSMTLGDIINKCRDNVISKHLVHHTKNEGL 287 Query: 295 AERGAQVKANTLTMNFS-KARDLARIDWGEGSPATFHEQRSLSERLYKEQG-LDTQKLLG 352 A++G T++ F+ R++ G+ P TFHE RSLS RLYK QG + QK+LG Sbjct: 288 AKKGTSCHEQTISKRFTWLVREVVD---GQNLP-TFHELRSLSARLYKAQGNISEQKVLG 343 Query: 353 HKTQQQTDRYHDDRGKGWSKVAL 375 HK+ + T+ Y D RG W V + Sbjct: 344 HKSAKSTEIYTDARGSEWVAVEM 366 >UniRef50_B4SVC2 Phage integrase n=42 Tax=Enterobacteriaceae RepID=B4SVC2_SALNS Length = 359 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 201/370 (54%), Gaps = 31/370 (8%) Query: 6 RKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTRLAEQRT 64 +K + ++P Y Y + +WR +PVT K LG +AI A EAN +A+ T Sbjct: 4 KKYDANLPR-YLTYRKASKSFFWR--NPVTDKEFPLGQIARRDAITQAIEANNFIAQNHT 60 Query: 65 RQILAISDRIATSKGK-AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 L I KG + T S W+DRY+ + L+ + +NTYK ++ ++ +RE+ Sbjct: 61 PVAL-----IEKLKGTDSFTVSAWIDRYEVL----LQRRSLSVNTYKIRSNQLATVREKM 111 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 G +++ V R IA+ L+ +I G+ MA +RSVL D+F+EA G + NP AT+ Sbjct: 112 GEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVK--NPVEATR 169 Query: 184 QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 P K+ R+RL LE + A+ + AM LALVTGQR DI MKFSD++D+ L Sbjct: 170 IPEIKVARERLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRL 229 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCR-----DYAVSAYLVHFFRSTSQAERG 298 +V Q KTG KIAIPLSL L A L V+ RCR D+ +SA + R S Sbjct: 230 YVTQIKTGMKIAIPLSLTLEAPGLRLGTVIDRCRLVSRTDFMISAGI----RKNSPT--- 282 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYK-EQG-LDTQKLLGHKTQ 356 + + LT F KAR + +++ +P TFHE RSL+ RLYK E G + QKLLGH + Sbjct: 283 GNIHPDGLTKTFVKARKASGVNFS-NNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSA 341 Query: 357 QQTDRYHDDR 366 T Y D+R Sbjct: 342 NTTKLYLDER 351 >UniRef50_A7FKY0 Integrase n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FKY0_YERP3 Length = 312 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/312 (38%), Positives = 182/312 (58%), Gaps = 18/312 (5%) Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDR-LKSGDIRLNTYKQKAKPVSLLRERAGM 125 I+A+ +RI + +T S W+ Y + R LKS I Y + + ++ E Sbjct: 16 IVALYNRINSVA--VVTVSDWVKTYTEVLSKRGLKSKTI--TGYNSR---LDVVDEVFAS 68 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 + I ++ +DIA LL++Y G+ A+++RS L D F+EA G + NP ATK P Sbjct: 69 RTIDSISTKDIATLLNDYTNNGKAASAKLMRSFLTDFFREAVSEGIIYN--NPVDATKNP 126 Query: 186 RRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV 245 + ++ R RLSL+ + I A ++ ++M LA+VTGQR+GD+ +MK+SDI DD L V Sbjct: 127 KIEVKRARLSLDNFLSIRAAAADMPGWVVDSMDLAIVTGQRVGDVRKMKWSDIKDDKLFV 186 Query: 246 IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANT 305 QEKTG +I IP ++L+ + SLRD++ARC + A+ + +++G T Sbjct: 187 EQEKTGMRIIIPFDVKLDTLLLSLRDIIARCENRAIKG------ETIISSDKGESFADKT 240 Query: 306 LTMNFSKARDLARIDWGEGSPATFHEQRSLSERLY-KEQGLD-TQKLLGHKTQQQTDRYH 363 LT F+KARDLA I W +P FHE RSL+ RLY KE G + +QK+LGHK+ Q TD+Y Sbjct: 241 LTKRFAKARDLANITWEGINPPPFHEIRSLASRLYEKEMGKEFSQKILGHKSAQTTDKYR 300 Query: 364 DDRGKGWSKVAL 375 D RG W ++ + Sbjct: 301 DVRGSEWIEIEV 312 >UniRef50_P27078 Integrase n=23 Tax=root RepID=VINT_BP434 Length = 356 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 199/365 (54%), Gaps = 25/365 (6%) Query: 13 PNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD 72 PNLY N Y+ Y+ P TGK LG + AI A +AN L + L + Sbjct: 14 PNLYIR-----NNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPL--TA 66 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 RI + ++T +WLDRY+ I L S I+ T + +R + + Sbjct: 67 RINSDN--SVTLHSWLDRYEKI----LASRGIKQKTLINYMSKIKAIRRGLPDAPLEDIT 120 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 ++IA +L YI G+ A+++RS L D F+EA G + NP AT+ + ++ R Sbjct: 121 TKEIAAMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITT--NPVAATRAAKSEVRRS 178 Query: 193 RLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGS 252 RL+ +E+ KI+ A+++ ++ AM LA+VTGQR+GD+ MK+SDI D +L+V Q KTG Sbjct: 179 RLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGV 238 Query: 253 KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSK 312 KIAIP +L ++A+ S+++ + +C++ ++ + R + + T++ F + Sbjct: 239 KIAIPTTLHVDALGISMKETLDKCKEILGGETII-------ASTRREPLSSGTVSRYFMR 291 Query: 313 ARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTDRYHDDRGKGW 370 AR + + + EG P TFHE RSLS RLY++Q D Q LLGHK+ +Y DDRG+ W Sbjct: 292 ARKASGLSF-EGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREW 350 Query: 371 SKVAL 375 K+ + Sbjct: 351 DKIEI 355 >UniRef50_D1S145 DNA integration/recombination/invertion protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1S145_SEROD Length = 287 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/295 (40%), Positives = 165/295 (55%), Gaps = 12/295 (4%) Query: 82 ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLD 141 I T TW +RY+ + D R G I T + + + G + +SA+ V DIA + Sbjct: 4 ILTRTWAERYEKLMDARCHHGYITEKTKSDYTRMIRRVLNFWGDETLSAITVADIADKIH 63 Query: 142 EYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKK 201 A A+ R L D F+EAQ G +P GYNPAL T++P +T RL+L EW Sbjct: 64 HIAAHHP-HSARRFRLNLCDFFQEAQRDGLIPLGYNPALVTREPFTPVTTNRLTLSEWSA 122 Query: 202 IFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSL 260 IF A++ RY AMLLALV QR GDI + ++D HLH+ Q+KTG IA+PL+L Sbjct: 123 IFCRAESVAPRYFVIAMLLALVAAQRRGDIVSFHSTHVFDGHLHIRQQKTGEMIALPLNL 182 Query: 261 RLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARID 320 RLNA++ +L DV+A C S L+ Q G V +L+ F + RD Sbjct: 183 RLNALDITLADVIAMC---PPSGLLL-------QQSNGKPVNTWSLSYWFKRCRDETIPR 232 Query: 321 WGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 G P +F EQRSLSERLY+E+G+DT+ LLGH+ Q TD+Y+ RG+ + ++ L Sbjct: 233 PKVGRPPSFREQRSLSERLYREEGIDTRTLLGHRHQSMTDQYNSLRGRDYRRLVL 287 >UniRef50_D2TZP7 Phage integrase n=3 Tax=Arsenophonus nasoniae RepID=D2TZP7_9ENTR Length = 336 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 202/363 (55%), Gaps = 31/363 (8%) Query: 13 PNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD 72 PNLY K N Y+ Y+ P T K + LG N+A AI A AN L T ++ +++ Sbjct: 3 PNLY-----KRNG-YYSYRDPRTRKEYGLGRNKAYAINEAISANQLLLN--TEKVKPLTE 54 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 RI +G ++ +LDRY+ I LK+ +R T K + + ++R+ I + Sbjct: 55 RI-DGQG-SVYFHEFLDRYEEI----LKTRGLREKTLKDYKQRIGVIRKGFVNAPIQNIT 108 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 ++IA L I R A+++RS+L D F+EA G + NP +TK P+ KI R Sbjct: 109 TKEIADFLQLSINEERITTAKLMRSLLNDCFREAISLGLIQ--INPVTSTKTPKIKIQRA 166 Query: 193 RLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGS 252 RLSLE++ I + + H ++ +AM LALVTGQR+ D+S++K+ DI D L +IQ+KTGS Sbjct: 167 RLSLEDFNTILGLINNGHHWLTHAMKLALVTGQRVSDVSKIKYKDIHDGKLWIIQQKTGS 226 Query: 253 KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSK 312 KIAIPL + L I L +A C + S ++++ G ++ ++ F + Sbjct: 227 KIAIPLDIELYGI--KLSKTIADCVNN--SEFVIN--------NNGNKITVERISKEFRR 274 Query: 313 ARDLARIDWGEGSPATFHEQRSLSERLYKE-QGLD-TQKLLGHKTQQQTDRYHDDRGKGW 370 RD+++++W G P +FHE RSLS RLY E G + QKLLGHK+ T +Y DDR W Sbjct: 275 FRDISQLNW-VGEPPSFHEIRSLSARLYTETMGSNFAQKLLGHKSATMTAKYQDDRNNSW 333 Query: 371 SKV 373 ++ Sbjct: 334 IEI 336 >UniRef50_Q2W5Y0 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y0_MAGSA Length = 370 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 194/366 (53%), Gaps = 18/366 (4%) Query: 16 YPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRI- 74 +P R Y+ + +P G+ + LG ++ A A A EAN QI+A+ D+ Sbjct: 13 WPANLRCRRDGYYSWVNPTDGREYGLGRDKRAAFAQAVEANL--------QIMALCDKPR 64 Query: 75 ATSKGKAITTSTWLDR---YQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAV 131 + T +T+ D Y+ D RL+ I T + ++ + R G ++ + Sbjct: 65 LVDRLNGTTDTTFADLAALYRQEIDKRLERAKIVKATAMSMRQRLATIETRWGATKVAQI 124 Query: 132 DVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 +D A +L EY AG+ RMAQ +RS ++DVF A G NP TK ++ R Sbjct: 125 TTKDAADMLREYEDAGKERMAQSMRSFMLDVFNHAVAIGWRET--NPVAVTKAVTVEVER 182 Query: 192 QRLSLEEWKKIFDIADATHR-YMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKT 250 RL+LE+++ I A A + AM LAL+TGQR D+ M DI D +L V+Q K Sbjct: 183 SRLTLEDFRAIHAYAAANMAPRVARAMELALITGQRRDDLRNMGPKDISDGYLWVVQSKG 242 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 G++++IP+ +RL +NWSL +VVA CRD +S + +H +A G ++A T+++ F Sbjct: 243 GARVSIPVGIRLQVVNWSLSEVVANCRDAVLSKHFLHHNAIVGKARPGDPIRAQTISLEF 302 Query: 311 SKARDLARIDWGEG-SPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTDRYHDDRG 367 ++ARD A I G +P TFHE RSL+ RL+ ++ + + LLGHK+ + Y D RG Sbjct: 303 AEARDKAGITGSTGKTPPTFHEIRSLAARLWTDERGEAFAKALLGHKSAEMAALYRDKRG 362 Query: 368 KGWSKV 373 W +V Sbjct: 363 DDWVRV 368 >UniRef50_B2Q6E8 Putative uncharacterized protein n=2 Tax=Providencia RepID=B2Q6E8_PROST Length = 354 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 28/375 (7%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 R KN PNLY K Y+ Y++P TG + +G N+AEA+ A AN + ++ Sbjct: 5 RSPKNAHLPPNLY------CRKGYYSYRNPETGIEYGIGRNKAEAVNEAISANLFIYGKK 58 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 I +R+A++ AI W+DR+ I R D++ T + ++ Sbjct: 59 ESLI----NRMASND--AIKFHDWIDRFGEIILLR----DLKKKTLDDYQGRLKRIKNSF 108 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 +S + +DIA ++ ++ G A+++RS+L D+F EA G V +NP +AT+ Sbjct: 109 NNVPLSEIKTKDIADYINNIVSDGNITTARLMRSILKDMFNEAMSDGVV--DFNPVIATR 166 Query: 184 QPRRKITRQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 PR KI R R+S ++ +I++ A + ++ +M LA++TGQR GDI ++K+ D+ D Sbjct: 167 VPRNKIARTRMSESDYIQIYNTAVEHCQPWVSMSMDLAILTGQRSGDIRKLKWDDVHDGF 226 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 L + QEKTG+KIAIPL++ N N +L+ V+ RC+ V +++G + Sbjct: 227 LWIEQEKTGTKIAIPLTISNNIANKTLQSVLDRCKHELNGKEFVLV------SQKGDMLA 280 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTD 360 T+ FS AR + + W EGSP TFHE RSL+ R+Y + + +LLGHK+ T Sbjct: 281 DKTIGKAFSLARSKSGLSW-EGSPPTFHEIRSLASRVYGNEKSNEFANQLLGHKSMDMTR 339 Query: 361 RYHDDRGKGWSKVAL 375 Y DDRG W K+ + Sbjct: 340 MYQDDRGLSWKKIEI 354 >UniRef50_B4T7X0 Integrase n=14 Tax=Enterobacteriaceae RepID=B4T7X0_SALHS Length = 284 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 117/289 (40%), Positives = 167/289 (57%), Gaps = 21/289 (7%) Query: 85 STWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYI 144 S W+DRY+ + L+ ++ +NTYK ++ ++ +RE+ G +++ V R IA+ L+ +I Sbjct: 2 SAWIDRYEVL----LQRRNLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWI 57 Query: 145 AAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFD 204 G+ MA +RSVL D+F+EA G + NP AT+ P K+ R+RL LE + Sbjct: 58 TEGKNTMAGAMRSVLSDMFREAIVEGHIVK--NPVEATRIPEIKVARERLQLETYNATRA 115 Query: 205 IADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNA 264 A+ + AM LALVTGQR DI MKFSD++D+ L+V Q KTG KIAIPLSL L A Sbjct: 116 AAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRA 175 Query: 265 INWSLRDVVARCR-----DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARI 319 L V+ RCR D+ +SA + R S + + LT F KAR + + Sbjct: 176 TGLRLGTVIDRCRLVSRTDFMISAGI----RKNSPT---GNIHPDGLTKTFVKARKASGV 228 Query: 320 DWGEGSPATFHEQRSLSERLYK-EQG-LDTQKLLGHKTQQQTDRYHDDR 366 ++ +P TFHE RSL+ RLYK E G + QKLLGH ++ T Y D+R Sbjct: 229 NFS-NNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSENTTKLYLDER 276 >UniRef50_B4ESJ2 Integrase n=2 Tax=Proteus mirabilis RepID=B4ESJ2_PROMH Length = 333 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 193/370 (52%), Gaps = 45/370 (12%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ 62 +R KN PNLY + K + Y+ T K ++G+N++ AI A +AN LA Sbjct: 4 SRSAKNKGLPPNLY------LRKGIYYYRDVRTKKEFSVGSNKSLAITEAIQAN--LAIY 55 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 + ++ L DRI + +T WLD Y+ ++ S ++ T + L++ Sbjct: 56 KPKESLV--DRI--NNVHCVTLHEWLDTYRG----KVNSRGLKEKTLYDYESRIKLIKLH 107 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 I V RD+A + EY + MA+++RS ++D F EA G + NP T Sbjct: 108 FNDCPIENVTPRDVATFISEY---PKKAMAKLLRSTMLDAFNEAIADGVIKE--NPVSVT 162 Query: 183 KQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 K P+ + R RLSLEE+K + + +R+M LLA++T QR+ DI MK+ DI +D Sbjct: 163 KPPKTSVQRSRLSLEEFKYALEHTNDKYRHM---FLLAVLTAQRISDIINMKWDDIKNDR 219 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 L+V Q KTGSK+AIPLSLRL +I +S++DV+ + S + Sbjct: 220 LYVTQIKTGSKVAIPLSLRLESIGYSIKDVLN--------------LMNRSSDKICGNTT 265 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ--GLDTQKLLGHKTQQQTD 360 A TL F +A ++ E P TFHE RSLS RLY+E+ +K+LGHK+ + TD Sbjct: 266 AKTLRGKFIEALP----EYLENKP-TFHEIRSLSARLYEEEKSAEFAKKILGHKSMRMTD 320 Query: 361 RYHDDRGKGW 370 +Y DDRG G+ Sbjct: 321 KYLDDRGNGY 330 >UniRef50_C6USQ2 Integrase n=3 Tax=Escherichia coli O157:H7 RepID=C6USQ2_ECO5T Length = 230 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 148/239 (61%), Gaps = 12/239 (5%) Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEE 198 +L+ Y+A G+ A+V+RS L+DVF+ A G V NP T+ + ++ R RL+ E Sbjct: 1 MLNTYVAEGKAVSARVIRSTLVDVFRGAIAEGHV--ATNPVTTTRAAKSEVRRSRLTANE 58 Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPL 258 + I+ A+ ++ +M LA+VTGQR+GD+ RMK+SDI D HLH+ Q KTG+KIAIPL Sbjct: 59 YVAIYHAAEHLPIWLRLSMDLAVVTGQRVGDLCRMKWSDINDGHLHIGQSKTGAKIAIPL 118 Query: 259 SLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR 318 +L ++A++ SL D + +CR+ + S ++ +++ E + T++ +KAR+ + Sbjct: 119 ALTIDALDISLVDTLQKCREASSSETII----ASTYHE---PLSPATVSRYLTKARNASG 171 Query: 319 IDWGEGSPATFHEQRSLSERLYKEQ-GLD-TQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 I + +G P TFHE RSLS RLY+ Q G Q+LLGHK+ Y D RG+ W K+ + Sbjct: 172 ISF-DGDPPTFHELRSLSARLYRNQIGYKFAQRLLGHKSDSMAAHYRDSRGREWDKIEI 229 >UniRef50_C4I537 Bacteriophage lambda integrase, N-domain family n=2 Tax=pseudomallei group RepID=C4I537_BURPS Length = 375 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 190/363 (52%), Gaps = 29/363 (7%) Query: 27 YWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTST 86 Y+ YK+ TGK + LG + A A A AN L + +++ +RI G +T Sbjct: 24 YFWYKNTATGKSYGLGRDFKVASAQARTANAELLHRAGD--VSLINRI---DGGKLTLDQ 78 Query: 87 WLDRYQAIQDDRLKSGDIRLNTYKQ----KAKPVS---LLRERAGMKLISAVDVRDIAQL 139 W D+Y + K+G+ + Q KA P S L+R +S ++ D + Sbjct: 79 WCDKYLQKFEASGKAGNTIKSVQSQIRAIKAAPFSTQSLMR-------VSTKEINDYIEG 131 Query: 140 LDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEW 199 + E A + +RS L DVF+ A+ G + G NPA+ K P ++R RL+L+++ Sbjct: 132 ITESRGA---TITAKIRSRLQDVFRSAEAAGHIELGKNPAIPVKAPPVDVSRDRLTLDDF 188 Query: 200 KKIFDIA--DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV--IQEKTGSKIA 255 I D+T + NA LAL+TGQRL DI+ M F + D L V I+ + K+ Sbjct: 189 NAIVARTREDSTRCWAANAFELALLTGQRLSDIAAMTFDQVKDGFLWVEPIKSQGKVKLK 248 Query: 256 IPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARD 315 IP+ + L+++ ++ V+ RCRD VS ++VHF + G +V +T++ F++ RD Sbjct: 249 IPVHVGLSSVKLTIEAVIKRCRDSVVSKHMVHFIHQRGSVKPGQKVYHDTISKTFAEMRD 308 Query: 316 LARIDWGEG-SPATFHEQRSLSERLYKEQ--GLDTQKLLGHKTQQQTDRYHDDRGKGWSK 372 +A I EG +P +FHE RSL+ RLY ++ Q L+GH + Q T Y D+RG+ W++ Sbjct: 309 VAGITGREGRNPPSFHEIRSLAIRLYSDEYGPAFAQALVGHTSAQMTALYRDNRGREWTE 368 Query: 373 VAL 375 V L Sbjct: 369 VKL 371 >UniRef50_C5CJJ9 Integrase family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CJJ9_VARPS Length = 362 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 187/356 (52%), Gaps = 25/356 (7%) Query: 27 YWRYKHPVTGKFHALG-TNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTS 85 Y+ + +PV K+ A+G A+A A EAN +EQ + L DR+ + K T Sbjct: 24 YFVWFNPVAKKYVAIGRVTLADARLQAIEANLWASEQLGKARLI--DRL---QQKDKTVR 78 Query: 86 TWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIA 145 WL + L + L +Y+ K+K ++ E G + + V+D A LDE Sbjct: 79 EWLKEWIG----ELTLAENTLKSYRAKSKAIN---EEMGDLALGRLTVKDTANALDEIKK 131 Query: 146 AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI 205 AQV RSVLI F A G + NPAL T+ + + RQR + ++K++ Sbjct: 132 KRGAPTAQVARSVLISAFGNAITKGHMET--NPALVTEAKKTTVARQRFTTATFEKVWAG 189 Query: 206 ADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGS--KIAIPLSLRLN 263 ++ NA LLA++TG R DI+ +KF+D+ DD+L V +K+ KIAIPL+L Sbjct: 190 LQDGPPWLRNATLLAMITGLRREDIAGLKFTDVADDYLLVAPKKSQGMVKIAIPLALYSE 249 Query: 264 AINWSLRDVVARCRDYA-VSAYLVHFFRSTSQAERGAQVKANTLTMNFSK--ARDLARID 320 A+ SL+D +A CR VS Y+VH T ++ G ++ +T+TM FS+ A+ L Sbjct: 250 AMKMSLKDAIAVCRRTGVVSQYMVHQTEHTGRSSPGQRMSLSTVTMRFSEYVAKALGE-- 307 Query: 321 WGEGSPATFHEQRSLSERLYKEQ-GLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 GE P TFHE RSL +R Y+ Q G+DT+ LLGH D Y ++RG + KV + Sbjct: 308 -GENLP-TFHELRSLCKRSYQAQGGVDTKALLGHLADSSADLYENNRGAEFKKVKI 361 >UniRef50_D0L1C6 Lambda integrase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1C6_HALNC Length = 385 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 133/395 (33%), Positives = 197/395 (49%), Gaps = 41/395 (10%) Query: 3 ARPR--KNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTRL 59 ARPR K N NLY + Y+ Y++P GK + LG + EA A EAN R Sbjct: 2 ARPRSRKKNDLPANLY-----EPRAGYFVYRNPENGKTYTLGRISRGEARDQAIEAN-RT 55 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 EQR Q L I+ A + G+ T S WL++Y + LK ++ NT +Q + + Sbjct: 56 FEQRAEQRL-INRLHAQALGE--TFSDWLNKYAEV----LKRRNLADNTMRQHKWRIKTM 108 Query: 120 RERAGMK-LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 ++ G + + + R A+ LD + + R A RS L+D F A G V NP Sbjct: 109 EQQFGAEPFVRLHETRHWAEWLDTFTEQDKTRSAIAWRSWLLDCFNAAIAAGWV--DRNP 166 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKF-- 235 + P + R RLSLE + I +A + +++ ++ LAL+T QR DI+ ++F Sbjct: 167 IEPIRAPTTIVKRDRLSLEAARAIICVAREQKDQWIARSIELALITAQRREDIASLQFRK 226 Query: 236 ---SDIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFR 290 + W D L+V Q+KTG+++AIPL+L + I +L D + CRD+ S +L+H Sbjct: 227 RDAASGWVESDSLYVTQQKTGARLAIPLTLAMPEIGMTLGDAIDACRDHIASRWLIHQTN 286 Query: 291 STSQAERGAQVKANTLTMNFSKARD---------LARIDWGEGSPATFHEQRSLSERLYK 341 + G+Q+ +T+T F+ RD L R D P +FHE RSLS RL+ Sbjct: 287 PHGNSPAGSQIWRDTITRRFADMRDEAARRSETPLWRQD---KEPPSFHELRSLSLRLHT 343 Query: 342 -EQGLD-TQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 G D Q L GHK + TD Y D RG W K++ Sbjct: 344 ARHGKDFAQALAGHKDARTTDTYRDIRGSEWVKLS 378 >UniRef50_A1JLQ1 Phage integrase n=7 Tax=Yersinia RepID=A1JLQ1_YERE8 Length = 351 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 174/321 (54%), Gaps = 21/321 (6%) Query: 1 MAARPRKNNVSVP-NLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTR 58 MA+RP++ + ++P NL Y R YWR +P+TGK LG +AI+ A +AN Sbjct: 1 MASRPKRYDANLPKNL--TYRRYYKSYYWR--NPLTGKEIPLGQIARRDAISQAIQANNY 56 Query: 59 LAEQRTRQILAISDRIATSKGKAI------TTSTWLDRYQAIQDDRLKSGDIRLNTYKQK 112 + + Q +A+ +R+ T ++WL RY + LK ++ NT K + Sbjct: 57 I--ESNFQPVALLERLQAPAPTPAAKAEINTVASWLKRYSEL----LKRRELAENTMKMR 110 Query: 113 AKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEV 172 + +++ G + I V + IA ++ Y+ G+ MA +RSVL DVF+EA G + Sbjct: 111 VLQIGYIKQEFGERPIETVTTKHIADFINTYVDNGKSSMAVNLRSVLSDVFREAIADGLI 170 Query: 173 PPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISR 232 NP AT+ P K+ R+RL + KI++ A ++ +M LAL+TGQR D+ + Sbjct: 171 --STNPVEATRTPSPKVKRERLDYAAFCKIYEAAGQQRNWVQLSMALALITGQRRDDVRQ 228 Query: 233 MKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 +K SD+ D L ++Q KT +IAI LSLRL +N ++ D++ +C + + S YL+ + Sbjct: 229 LKRSDVHDGKLWIVQSKTKMQIAISLSLRLEIMNTTVGDIIEKCLNNSKSEYLISSSNKS 288 Query: 293 SQAERGAQVKANTLTMNFSKA 313 S + GA + A++LT F KA Sbjct: 289 SGRKPGA-LNADSLTKAFVKA 308 >UniRef50_C5BBQ8 Integrase n=3 Tax=Edwardsiella RepID=C5BBQ8_EDWI9 Length = 364 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 114/357 (31%), Positives = 182/357 (50%), Gaps = 27/357 (7%) Query: 27 YWRYKHPVTGKFHALG-TNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTS 85 ++ +++P++G+ LG + EA+ A EAN + QR + S Sbjct: 23 FFIWRNPLSGQEMPLGYIKKNEAVRQAQEANQYIDTQRP------------MVEACPSVS 70 Query: 86 TWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIA 145 W+ Y I R + NT + + + ++ G K I+ V RDIA LL Y+ Sbjct: 71 QWMAEYLRILGYR----GVAANTLRARRSQIKAVQTVIGQKNIAQVTTRDIALLLHHYVL 126 Query: 146 AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI 205 G A ++RS L +F+EA G + YNP T+ P ++ R+RL+ + ++ Sbjct: 127 IGHLSAAGLMRSFLNALFREAIAAGLI--DYNPVTQTRTPPIRVKRRRLTETMLQTVYAQ 184 Query: 206 A---DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRL 262 A + ++ ++ LAL+TGQR D+ +++ DI +D L VIQ KTG+++A+ L L L Sbjct: 185 ALQLEPHKPWLPRSIELALLTGQRREDLCALRWQDIREDKLWVIQRKTGARLAMTLDLHL 244 Query: 263 NAINWS--LRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARID 320 ++ LR+V+ARCR S YL++ R G + +TLT FS+ D + Sbjct: 245 QLGDYPLRLREVLARCRIPGPSDYLLNSQRPRLNRRPGGSLVPDTLTKGFSRLMDKCGLV 304 Query: 321 WGEGSPATFHEQRSLSERLYKEQ-GLD-TQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 E SP +FHE RSLS R+Y+ Q G + Q+LLGHK + T++Y D R W + L Sbjct: 305 -QEISPPSFHEIRSLSSRMYQAQYGTEFCQRLLGHKNRHMTEKYLDLREALWQMIEL 360 >UniRef50_C4SF49 Integrase n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SF49_YERMO Length = 226 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 136/225 (60%), Gaps = 6/225 (2%) Query: 151 MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATH 210 +A +RSVL DVF+EA G + NP AT+ P K+ R+RL + KI + A Sbjct: 6 IALNLRSVLSDVFREAIADGLISS--NPVEATRTPSPKVKRERLDYTAFCKIHEAASQQQ 63 Query: 211 RYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLR 270 ++ +M LAL+TGQR D+ ++K SD+ D L VIQ KTG++IAI LSLRL +N ++ Sbjct: 64 NWVQLSMALALITGQRRDDVRQLKRSDVHDGRLWVIQGKTGNQIAISLSLRLEIMNATVG 123 Query: 271 DVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFH 330 D++ +C + + S YL+ +S E GA + A++LT F KA + + + SP +FH Sbjct: 124 DIIEKCLNNSKSEYLISSSNKSSGREPGA-LNADSLTKAFVKALKATDLVY-KISPPSFH 181 Query: 331 EQRSLSERLYK-EQGLD-TQKLLGHKTQQQTDRYHDDRGKGWSKV 373 E RSL+ RLY+ E G + QKLLGHK+ + T+ Y D R W ++ Sbjct: 182 EIRSLASRLYEAEYGKEFAQKLLGHKSMKMTNVYLDSRKNEWVEI 226 >UniRef50_Q2W5Z6 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Z6_MAGSA Length = 316 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 145/262 (55%), Gaps = 11/262 (4%) Query: 27 YWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTST 86 Y+ +++P+ GK H LG ++A A A EAN +A T+ L DR+ +++ + Sbjct: 22 YFIWRNPIDGKKHGLGRDKASASLQAIEANLHIAGMLTKSRLI--DRVLGGDDQSV--AA 77 Query: 87 WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAA 146 W RY I +DR + + R ++ ++ + ++E G + V + IA L + Sbjct: 78 WCGRYAKILEDRTLADETR----REFSRRIGKIKETLGSHQVDKVTTKHIADFLRPWTDD 133 Query: 147 GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIA 206 G+ RMAQ +RS+++D+F+EA G NP T+ PR + R RL+L+ + I +A Sbjct: 134 GKKRMAQAMRSLMLDMFREAVAAGWAK--QNPVAVTRAPRVAVARARLTLDMFVAIHAVA 191 Query: 207 DATHR-YMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAI 265 ++G +M LALVT QR D++ M D+ + L + QEKTG++++IP LRL A+ Sbjct: 192 LRDQSPWVGRSMELALVTAQRREDVALMGRKDMREGRLWITQEKTGARVSIPADLRLQAV 251 Query: 266 NWSLRDVVARCRDYAVSAYLVH 287 NWS+ DV+ RC D ++ VH Sbjct: 252 NWSVGDVIQRCHDKILAPTFVH 273 >UniRef50_B7V4V5 Phage integrase, putative n=2 Tax=Pseudomonas RepID=B7V4V5_PSEA8 Length = 370 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 121/377 (32%), Positives = 182/377 (48%), Gaps = 39/377 (10%) Query: 1 MAARPR-KNNVSVP-NLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTR 58 M+ RPR K N +P NLY L +R+ +RYK P GK+ G + A+AI A + N Sbjct: 1 MSPRPRNKANKGLPQNLY-LDARRGT---YRYKRPTDGKWFPFGPDRAKAIDAAKQLNL- 55 Query: 59 LAEQRTRQILAISDRIATSKGKAITT-STWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 + + +D + +G +LD+Y+ + L ++ T A Sbjct: 56 -------EFMRGADLVNKVQGAGSDLFVAFLDKYER---EILPPRELAKGTLDLYAVRFR 105 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 R + + + +R +A+LLD PR A R++L+D+F A G P N Sbjct: 106 QFRAAWPTQAVDEITIRMVAELLDSLT----PRAANQARALLVDIFNHAAAKGLCPD--N 159 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 PA +T K R+R ++E + I + A A ++ NA+ LAL+T QR DI M+F D Sbjct: 160 PAASTIARIEKKQRKRHTVEGLRAIREQAPA---WLQNAIDLALITAQRRTDILAMRFDD 216 Query: 238 IWDDHLHVIQEKTG-SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF------R 290 + D L+V+Q+KT + A + R+ A L+ V+ARCRD S +L+H + Sbjct: 217 VRDGFLYVVQQKTAKASDAAWIRFRVTA---ELQAVLARCRDNVPSPFLIHRRPERKRQK 273 Query: 291 STSQAERGAQVKANTLTMNFSKARDLARI--DWGEGSPATFHEQRSLSERLYKEQGLDTQ 348 Q E +V+ LT F ARD A W E FHE R+LS LYK+ G D Q Sbjct: 274 QAEQKEHWTKVEERYLTRAFKDARDAAGCYSGWSEEEMPGFHEIRALSLHLYKKAGKDGQ 333 Query: 349 KLLGHKTQQQTDRYHDD 365 K+ GH +++ T Y D Sbjct: 334 KIAGHASEEMTRNYQRD 350 >UniRef50_B2TUZ8 Phage integrase n=4 Tax=Shigella RepID=B2TUZ8_SHIB3 Length = 228 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/217 (38%), Positives = 120/217 (55%), Gaps = 16/217 (7%) Query: 159 LIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAML 218 D+FK A G +PA AT+ R ++ R RL ++E+ I IAD + + G M Sbjct: 26 FTDIFKTAIASGLAEE--DPASATRPFRTEVKRSRLLIDEYLLIRKIADVQNEWFGLCMD 83 Query: 219 LALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRD 278 LALVTGQR GD++ M++ DI D L+V Q+KTG+KI I L ++ +N +L DV+ + Sbjct: 84 LALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLPTTISRLNLTLTDVLDNLKK 143 Query: 279 YAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSER 338 ++ G + A T+ F ARD + + W EG P FHE RSLS R Sbjct: 144 ----------INGKNEKLLGGKT-ARTIAAQFRIARDTSGLKW-EGDPPPFHEIRSLSGR 191 Query: 339 LYK-EQGLD-TQKLLGHKTQQQTDRYHDDRGKGWSKV 373 L+ E+G D TQ LLGH++ TD+Y D RG+ W + Sbjct: 192 LHSAEKGSDFTQALLGHRSSSMTDKYRDGRGREWKDI 228 >UniRef50_B2JXK0 Putative uncharacterized protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JXK0_BURP8 Length = 194 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/147 (44%), Positives = 92/147 (62%), Gaps = 4/147 (2%) Query: 212 YMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRD 271 ++ NAMLLAL++GQ L I R + + + + V + KTG IAIPL LR+ IN SL + Sbjct: 38 WLQNAMLLALISGQALSTIGRWERASVKNGGAVVTRAKTGVSIAIPLELRMETINMSLGE 97 Query: 272 VVARCR-DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFH 330 ++ARC+ VS YL+ R A +G+ +K T++ F R LA +G P TFH Sbjct: 98 IIARCKASCVVSKYLIRHLRGNVNAPKGSAIKLKTISEKFLPVRRLAGYT-ADGDP-TFH 155 Query: 331 EQRSLSERLY-KEQGLDTQKLLGHKTQ 356 E RSLS+RLY +E G+DT+ LLGH+T+ Sbjct: 156 EIRSLSKRLYLEEDGVDTKALLGHRTR 182 >UniRef50_Q1LEK8 Phage integrase n=4 Tax=Burkholderiaceae RepID=Q1LEK8_RALME Length = 151 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 5/146 (3%) Query: 233 MKFSDIWDDHLHVIQEKTG--SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFR 290 M+F + L+V Q+K+ +K+ IP+S+ L A+N ++ D + CRD +S ++ R Sbjct: 1 MRFDAVKGGFLYVEQQKSKGRTKLKIPISVGLTALNMTIEDAIRGCRDSILSKSIIPHVR 60 Query: 291 STSQAERGAQVKANTLTMNFSKARDLARIDWGEG-SPATFHEQRSLSERLYKEQ-GLD-T 347 A+ G K + + F+K RD A+I G +P +FHE RSL+ LY E+ G + Sbjct: 61 HKGVAKPGDSPKLASFSDAFAKFRDPAKIKVPTGRTPPSFHEIRSLAAHLYSEEYGPEFA 120 Query: 348 QKLLGHKTQQQTDRYHDDRGKGWSKV 373 Q LLGHK+ T Y D RG+ W++V Sbjct: 121 QALLGHKSAAMTALYRDSRGREWAEV 146 >UniRef50_Q2SDK0 Integrase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDK0_HAHCH Length = 159 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 16/160 (10%) Query: 213 MGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDV 272 M NAM LAL+T QR DIS+MKF DI D +L+VIQEKT L + I L++V Sbjct: 1 MKNAMDLALLTLQRREDISKMKFEDIKDGYLYVIQEKTKKHDTGYLRI---EIGEQLQEV 57 Query: 273 VARCRDYAVSAYLVH------FFRSTSQAERGAQVKANTLTMNFSKARDLARI----DWG 322 + RCR S ++++ F R S+ QV + ++ F RD +++ ++ Sbjct: 58 LKRCRTDIPSPFIINRRPQRKFKRIKSK--HWTQVLPDMISREFKSIRD-SQVGLYENYQ 114 Query: 323 EGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRY 362 EG TFHE R+L E+LYK+QG D ++L G +++ Y Sbjct: 115 EGEKPTFHEIRALGEKLYKDQGKDPKQLGGWASEKMVKNY 154 >UniRef50_C0AVY7 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AVY7_9ENTR Length = 121 Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 36/60 (60%), Positives = 44/60 (73%) Query: 217 MLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 MLLALVTGQR+ DI M I++DHLH+ Q KT +IAIPLSL L+ I +SL DVV+ C Sbjct: 1 MLLALVTGQRISDIVTMHHDHIFNDHLHITQMKTSERIAIPLSLTLDEIEFSLSDVVSMC 60 >UniRef50_D2U4J7 Phage integrase n=5 Tax=Gammaproteobacteria RepID=D2U4J7_9ENTR Length = 392 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 100/396 (25%), Positives = 168/396 (42%), Gaps = 55/396 (13%) Query: 1 MAARPRKNNV-SVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 MAARPRK ++P+ L+ K +Y + GK +G ++A AIAIA E N + Sbjct: 1 MAARPRKREYRNLPDF--LFFDKSKNIYRLVL--INGKKKNIGNDKALAIAIAREYNNIM 56 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 R ++I+ I S GK + + + + +K + T + + Sbjct: 57 ---RPLLNISINSLIQESGGKFGEGLPFSEHVEHLFKRIVKDETPSITTLADWKNDIERV 113 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 +E L + + + + + +++Y + S L +F A E NPA Sbjct: 114 KEFFINILCTEISLEHVNEYINKYHGNASANVQNRKVSFLKKLFSYA--IDESLMLDNPA 171 Query: 180 -LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS-- 236 ++ K R RLS +++KKI + A+ ++ AM LAL T Q ++SR++++ Sbjct: 172 ERKKRRRTDKKVRHRLSFDDFKKIRNAAEP---WLRTAMDLALQTTQARLEVSRIRYNIK 228 Query: 237 --------DIWDD------------HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 IW H +Q+K S IAIP+ +L ++++ Sbjct: 229 SPQEGICGCIWYKEPQNNIYGMLYIHRQKVQDKEASHIAIPIGAKL-------KEIIDNS 281 Query: 277 RDYAVSAYLVHFF------RSTSQAERGAQVKANTLTMNFSKARD----LARIDWGEGSP 326 RD S Y+VH + +S+ Q+ + L+ FS RD A + E Sbjct: 282 RDSIASPYVVHRLPIKRPSKISSEIHHPTQIAPDYLSRAFSNLRDQLGVTANLTLAER-- 339 Query: 327 ATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRY 362 TFHE R+L+ L+K GLD Q + H + T Y Sbjct: 340 PTFHEIRALAAHLFKINGLDPQARMAHSDAKSTKIY 375 >UniRef50_C8Q741 Integrase n=1 Tax=Pantoea sp. At-9b RepID=C8Q741_9ENTR Length = 102 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 1/103 (0%) Query: 217 MLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 M + L+TGQR D + MKFSDI D L + Q K KI +P+SLRL AI L +V+ +C Sbjct: 1 MNIKLLTGQRRLDTTGMKFSDIADGRLFITQSKISHKIVLPVSLRLEAIGLDLNEVIEQC 60 Query: 277 RDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARI 319 R S L++ F G V + +T F++ARDL+ I Sbjct: 61 RISNPSDNLIYSFVKFGGCSAGP-VMPDAMTGEFAEARDLSGI 102 >UniRef50_A5W814 Phage integrase family protein n=4 Tax=Proteobacteria RepID=A5W814_PSEP1 Length = 326 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 26/231 (11%) Query: 138 QLLDEYIAAGR------PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 Q+L ++AA + P MA V S L VF A V NP K+ K Sbjct: 96 QVLPRHVAALKLHMSDTPNMANRVISFLRMVFNYALEQQIV--DSNPCTGIKRHTEKKRD 153 Query: 192 QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTG 251 + ++ EE+ I DA Y+ + + + +TGQR+GD+ +K SDI + + Q+KTG Sbjct: 154 RYITDEEFAAI---CDAASPYIRSILEMCYLTGQRIGDVLAIKLSDISEKGIAFDQQKTG 210 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 +K+ + + L ++AR + + F + G V T+ F Sbjct: 211 AKLIV-------GMTPDLEQLIARTKAIPRKVRGLTLFCTRGG---GKPVSYETVKDAFK 260 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRY 362 KA + A++ + AT H+ R+ S +QG D QKL GH + T+RY Sbjct: 261 KACEKAKV-----TGATIHDLRAKSLTDTDDQGNDAQKLGGHTNAKMTERY 306 >UniRef50_Q5R0D1 Integrase n=2 Tax=Alteromonadales RepID=Q5R0D1_IDILO Length = 383 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 45/209 (21%) Query: 194 LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD-IWDD----------- 241 L+ E +K I + A Y+ AM L++ T + +ISR+++ D +W D Sbjct: 184 LTAEAFKLIHEAASV---YLKVAMELSMQTTHAVLEISRIQYKDCVWLDKPVVEEGMMVF 240 Query: 242 -----HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF-----RS 291 H +EK S++ IP I L+ V+ R RD +S Y+VH R Sbjct: 241 GYLRIHRQKTEEKEASRVEIP-------ITKELKRVIERSRDRLLSPYIVHRRGRYPKRV 293 Query: 292 TSQAERGAQVKANTLTMNFSKARD-------LARIDWGEGSPATFHEQRSLSERLYKEQG 344 + QV + ++ FSK RD L++I+ +FHE R+LS R YK+ G Sbjct: 294 GEGCDHPTQVASKYISREFSKLRDQLGLFSELSKIER-----PSFHEIRALSARAYKDGG 348 Query: 345 LDTQKLLGHKTQQQTDRYHDDRGKGWSKV 373 D Q + H + T Y ++ K W++V Sbjct: 349 YDPQARMAHSDAKSTKVYTENH-KLWTRV 376 >UniRef50_C2I7M1 Integrase n=1 Tax=Vibrio cholerae TM 11079-80 RepID=C2I7M1_VIBCH Length = 237 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 36/208 (17%) Query: 191 RQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI-W------DD-- 241 RQRLSL E+K I+ IA ++M AM L+L T + ++ MK+ I W +D Sbjct: 32 RQRLSLAEYKTIWAIAP---KWMRIAMDLSLETTHAVNEVCAMKYEHITWLSEPAVEDGV 88 Query: 242 ----HLHV----IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVH-----F 288 HL + ++ K S++ IP++ SL ++ +D S Y+VH F Sbjct: 89 EVFGHLRIHRRKVKTKEASRVVIPVTR-------SLLKIIEDSKDDVDSPYIVHRLPEKF 141 Query: 289 FRSTSQ-AERGAQVKANTLTMNFSKARDLARI--DWGEGSPATFHEQRSLSERLYKEQGL 345 SQ + QV L+ FSK RD A++ TFHE R LS LY + G Sbjct: 142 SNEVSQHCDHFTQVNRKYLSRFFSKLRDQAKVKKSIAVDCRPTFHEIRGLSIHLYDKAGH 201 Query: 346 DTQKLLGHKTQQQTDRYHDDRGKGWSKV 373 D Q H + T Y + K W +V Sbjct: 202 DPQSRAAHTDARSTKIYKEGHEK-WVQV 228 >UniRef50_Q48JR5 Putative uncharacterized protein n=4 Tax=Pseudomonas RepID=Q48JR5_PSE14 Length = 311 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 58/119 (48%), Gaps = 19/119 (15%) Query: 268 SLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANT-----------LTMNFSKARDL 316 L+ V++RCRD S YLVH + ER Q +A T LT F AR+ Sbjct: 186 ELQAVISRCRDNVASPYLVH-----RRPERLKQKQAQTKDHWTKIEERYLTRAFKAARED 240 Query: 317 ARI--DWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGK-GWSK 372 A DW + FHE R+LS LYK+ G D QK+ GH ++ T Y D + WS+ Sbjct: 241 AGCYADWSDEEMPGFHEVRALSLHLYKKAGKDGQKIAGHASEDMTKNYQKDHAEIVWSE 299 >UniRef50_UPI00016AAE5A phage integrase family protein n=2 Tax=Burkholderia pseudomallei RepID=UPI00016AAE5A Length = 153 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 28/153 (18%) Query: 215 NAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVA 274 +AM +A +TGQR D+ ++K SDI D +LH++Q KTG+ + I AI LR V+ Sbjct: 5 DAMDIAYLTGQRPADVRKIKRSDIRDGNLHIVQNKTGAHLRI-------AIEGELRRVIE 57 Query: 275 RC--RDYAVSA-YLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHE 331 R R V+ YL+ Q E G + + + F KAR++A + + + Sbjct: 58 RINGRPRTVTGLYLI-------QDENGRALTQDAMRSRFDKAREIAGVSF---------Q 101 Query: 332 QRSLSERLYKEQG--LDTQKLLGHKTQQQTDRY 362 R + + + G +QKLLGH+++ T+ Y Sbjct: 102 FRDIRAKAASDTGDLSHSQKLLGHRSRDMTEHY 134 >UniRef50_Q2W3R2 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W3R2_MAGSA Length = 335 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 123/288 (42%), Gaps = 42/288 (14%) Query: 91 YQAIQDDRLKSGDIRLNTYKQKAKP-----VSLLRERAGMKLISAVDVRDIAQLLDEYIA 145 + A+ + L SG+ R N KQK K + +LR R G ++ ++V+ + ++ D + Sbjct: 57 FDAMVEAYLASGEYRQN-LKQKTKDAYRYDLDILRTRFGKFRVADIEVKHVLKMRDFF-- 113 Query: 146 AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI 205 A +P A + L VF G + NPA + + ++L + K Sbjct: 114 ADKPGKANTLVRTLRVVFGWGIGRGLMKT--NPA-----DLKGVNVKKLKIGAHKPWAPA 166 Query: 206 ADATHRYMGNAML-----LALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSL 260 A A R G L L L TGQR GD+ R+++ DI D +HV QEKTG ++ +P+S Sbjct: 167 ALAKFRAEGQPHLVLAFELGLATGQRQGDLIRLRWDDISDGVVHVAQEKTGKELWLPVSK 226 Query: 261 RLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ-VKANTLTMNFSKARDLARI 319 L V+AR AV+ LV+ RG +KAN L F ++ R+ Sbjct: 227 HLAG-------VLARAPRQAVTV-LVN--------SRGTPWIKANPLAQAFGA--EITRL 268 Query: 320 DWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRG 367 FH R + + G T+++ Q H RG Sbjct: 269 GL---DGLVFHGLRKTAAVALADVGCSTKQIAAVTGQSDQMVEHYTRG 313 >UniRef50_Q8DFY9 DNA-directed RNA polymerase, beta subunit/140 kD subunit n=1 Tax=Vibrio vulnificus RepID=Q8DFY9_VIBVU Length = 224 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 99/225 (44%), Gaps = 41/225 (18%) Query: 177 NPALATK-QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 NPA +P+ + R+ L+L E+K I+ + R AM L+L T + +I MK+ Sbjct: 4 NPAKRKNVRPKEEKQRRDLTLSEYKSIWASLLSGMRV---AMDLSLETTHAVNEICAMKY 60 Query: 236 SDI-------WDDHLHV----------IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRD 278 DI +D + V +++K S++ IP + SL +++ +D Sbjct: 61 EDITMLDAPVLEDGVEVFGYLRIHRRKVKKKEASRVVIP-------VTRSLLNIIEASKD 113 Query: 279 YAVSAYLVHFF-----RSTSQ-AERGAQVKANTLTMNFSKARDLARIDWGEGSPA----T 328 S Y+VH SQ + QV L+ FSK RD ++ +G PA T Sbjct: 114 NIDSPYVVHRLPEKRSNDVSQYCDHLTQVNRKYLSRFFSKLRDQVKV--KKGVPADCRPT 171 Query: 329 FHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKV 373 +HE R LS LY + G D Q H + T Y + K W +V Sbjct: 172 YHEIRGLSIHLYDKAGHDAQARAAHTDSRSTKIYKEGHEK-WVQV 215 >UniRef50_A4EPH1 Integrase n=2 Tax=Rhodobacteraceae RepID=A4EPH1_9RHOB Length = 332 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 9/73 (12%) Query: 216 AMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAI---------N 266 A LAL TGQR D++RMK+SDI DD + V Q KTG ++ IP + L AI + Sbjct: 179 AFELALGTGQRASDLTRMKWSDIEDDGIWVTQGKTGVRLWIPFTDSLRAILDETPRKSLH 238 Query: 267 WSLRDVVARCRDY 279 W L D R Y Sbjct: 239 WILSDDFGRQLGY 251 >UniRef50_A8ZYY4 Integrase family protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYY4_DESOH Length = 409 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 97/220 (44%), Gaps = 21/220 (9%) Query: 150 RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADA 208 R Q V VF A+ G V G NP A K P+ + R LS++E +K+FD A Sbjct: 170 RTIQYALQVTRQVFNMARKRG-VYTGENPTSAVKWPKLDNMKMRYLSIDEAEKLFDALAA 228 Query: 209 THRYMGNAMLLALVTGQRLGDISRMKFSDI-WD-DHLHVIQEKTGSKIAIPLSLRLNAIN 266 + + LL+L +G R G+I+++ +S + W L ++ KTGS+ A L+ R A+ Sbjct: 229 KSHNLHDMALLSLHSGLRFGEIAKLTWSCVNWKAGTLAILDAKTGSRTAY-LTTRAKAM- 286 Query: 267 WSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSP 326 + R+ L+ RS G+ +A+ K L + Sbjct: 287 -------LKNREEGAPNELIFQKRSGLD---GSIARASKTFSRVVKELGLNQGITDRKQK 336 Query: 327 ATFHEQR-SLSERLYKEQGLD---TQKLLGHKTQQQTDRY 362 TFH R S + LY E D TQK LGH T T RY Sbjct: 337 VTFHTLRHSYATHLY-ESTHDLYLTQKSLGHTTSTMTQRY 375 >UniRef50_A7JSJ8 Possible integrase/recombinase n=2 Tax=Mannheimia haemolytica RepID=A7JSJ8_PASHA Length = 351 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 84/329 (25%), Positives = 140/329 (42%), Gaps = 65/329 (19%) Query: 3 ARPRKN-NVSVP-NLYP-LYSRKVNK--VYWRYKHPVTGKFH-ALGTNEAEAIAIATEAN 56 RPRK N +P NL P +RK K +YW Y+ GK +LGTN EA A + N Sbjct: 2 GRPRKQQNRYLPENLRPKTVTRKSGKTVIYWLYR--THGKTEISLGTNRNEAFIKAAQLN 59 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRY--QAIQDDRLKSGDIRLNTYKQKAK 114 Q R IT RY + I + + L K K Sbjct: 60 IERESQTAR----------------ITFGLVAKRYRDEVIPQKKASTAQTDLC----KIK 99 Query: 115 PVSLLRERAGMKLISAVDVRDIAQLLDEYIA--AGRPRMAQVVRSVLIDVFKEAQHYG-- 170 + L A ++ I+ +R EY+ P A S+ +++ A+ +G Sbjct: 100 NLLLFFNDAPLEEITPQHIR-------EYMIWRKDTPGSANNEFSMFSHIWQYAREWGYT 152 Query: 171 EVPPGYNPALATKQPRRKITRQRLSLEE--WKKIFDIADATHRYMGNAMLLALVTGQRLG 228 +P +P + K R I ++ + +E ++ ++++AD M + M LA +TGQR Sbjct: 153 NLP---SPNIGMK--RYPIRKREIYVENNIFQMVYEVADQD---MRDLMDLAYITGQRPV 204 Query: 229 DISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHF 288 D+ ++ I+D +LH++Q+KT +K+ I + +L I +D A H Sbjct: 205 DLVNIRKEHIFDGYLHIVQQKTQAKLRIEIVGKLADI----------IQDRLEKATGTHL 254 Query: 289 FRSTSQAERGAQVKANTLTMNFSKARDLA 317 F + ++G ++ A L F+ R+ A Sbjct: 255 FST----KKGEKLTARKLGKRFTYIREQA 279 >UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q1GLB2_SILST Length = 411 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 25/216 (11%) Query: 80 KAITTSTWLDRY-QAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA-GMKLISAVDVRDIA 137 KA T + +R+ +A +R K +T K+ + + L A G + V+ RDIA Sbjct: 112 KAPTVAALCERFFEAHAKERCKP-----STQKEYRRAIDLFIVPALGSFKVVDVERRDIA 166 Query: 138 QLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSL 196 +L ++ +P A VL +F A+ +G P G NP + R++ R+R LS Sbjct: 167 ELHHKF--RDKPHQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPK-YREVKRERFLSQ 223 Query: 197 EEWKKIFDIADATHR------YMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKT 250 E +++ + R +M A L ++TG RLG+I +K+ I + + + KT Sbjct: 224 SELQRLGQVLTEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWGYITANGMELPDSKT 283 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLV 286 G++ IPL RDV+AR Y++ Sbjct: 284 GAR-RIPLP-------QPARDVLARLPRTPGHPYVI 311 >UniRef50_C3MAV8 DNA integration/recombination/invertion protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAV8_RHISN Length = 429 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 L+ + KL+ V RD+ +LLDE + G P MA VR++L F A V +P Sbjct: 137 LKPKWKQKLVKTVTKRDVLKLLDEIVDRGSPIMANRVRALLSKFFAWAMERDIV--DASP 194 Query: 179 ALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 ++ K P + TR R L+ EE + ++ A+ G + L L+T QR R + SD Sbjct: 195 VVSIKAPSEEKTRDRILTDEEIRFLWLAAEKLAYPFGPVVKLLLLTAQR-----RTEVSD 249 Query: 238 -IWDD 241 +WD+ Sbjct: 250 ALWDE 254 >UniRef50_A9MNF9 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MNF9_SALAR Length = 96 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 216 AMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIA 255 AM LAL+TGQR D+S ++FS+I DD L+V Q KTG KIA Sbjct: 34 AMDLALITGQRREDVSCLRFSNIIDDRLYVKQIKTGMKIA 73 >UniRef50_C0DS64 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DS64_EIKCO Length = 355 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 14/181 (7%) Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAI 256 E++ ++++ A+ R++ ML+A GQR+ D +++ +DI D L + Q K +K+ I Sbjct: 178 EQYWRLYECAE---RHLQLLMLVAYFIGQRVADCLKIRTTDIKDGELWIEQNKVQTKVRI 234 Query: 257 PLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDL 316 L+ L + D++ R R YL F Q RG + L +AR+ Sbjct: 235 KLTGELAEV----LDLILRERGEQKHDYL--FVSLGRQRHRGQPMTYAMLRGAMDRAREK 288 Query: 317 ARIDWGEGSPATFHEQRSLSERLYKEQ-GLDTQK-LLGHKTQQQTDRYHDDRGKGWSKVA 374 A I E + F + R+ + + G++ + LLGH TQ T RY +R S+ A Sbjct: 289 AGI---EKAAFQFRDLRAKAATDTDDAVGIEAARVLLGHTTQNMTKRYIRNRKGHLSEPA 345 Query: 375 L 375 + Sbjct: 346 V 346 >UniRef50_B8K7Z4 Integrase n=2 Tax=Vibrio RepID=B8K7Z4_VIBPA Length = 380 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 85/385 (22%), Positives = 152/385 (39%), Gaps = 62/385 (16%) Query: 37 KFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD----RIATSKGKAITTSTWLDRYQ 92 K LGT E EAI A N + + ++S+ R A SKG+ + L + Sbjct: 3 KLFPLGTAEQEAIQAAHVYNLQYRPE-LGSAFSLSEMTPFRKAVSKGRKDKFNRPLKDWL 61 Query: 93 AIQDDRLKSGD-IRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRM 151 + R+K+ + + + ++ + L E G L ++ ++ I + + +Y R Sbjct: 62 PVVLARVKAEEKLSKDVFRNLERDCERLEEHMGKCLTKSLKLQHINEHICKYYEDLNNRQ 121 Query: 152 AQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR---RKITRQRLSLEEWKKIFDIADA 208 S L +F + + L KQ R T+ R +L+ ++ I +A Sbjct: 122 LNGKISNLKKIFSYLADESAIESNF--VLNKKQRRLSKEDYTKARHNLD-YESYLQIYEA 178 Query: 209 THRYMGNAMLLALVTGQRLGDISRMKF----------SDIWDD----------------- 241 ++ AM L L T + +I R+++ +W+ Sbjct: 179 APLFLKVAMSLTLETTHAVREIYRLRYRIKKPREGVCGILWNAEGRVDYIDGQAIYGTLY 238 Query: 242 -HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSA-YLVHFFRSTSQAERGA 299 H +Q+ S +AIP + +++D+V + + Y+VH R Q +RG Sbjct: 239 IHRQKVQKSETSAVAIP-------VTQAIKDIVDLSKTSRLHCPYVVH--RKPRQLQRGI 289 Query: 300 --------QVKANTLTMNFSKARDLARIDWGEGSPA---TFHEQRSLSERLYKEQGLDTQ 348 QV + ++ FSK RD + +G A T+HE R LS R+ +EQG+ Sbjct: 290 SKETDHLYQVHHHNISKEFSKVRDSLGL-YGHLKKALRPTYHEIRGLSARMIEEQGISAT 348 Query: 349 KLLGHKTQQQTDRYHDDRGKGWSKV 373 + + H T Y + W+ V Sbjct: 349 ERMAHANADTTKIYTRENDIRWNHV 373 >UniRef50_C0X0P7 Phage integrase family site specific recombinase n=4 Tax=Enterococcus faecalis RepID=C0X0P7_ENTFA Length = 369 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 69/324 (21%), Positives = 144/324 (44%), Gaps = 34/324 (10%) Query: 62 QRTRQILAIS----DRIATSKGK-AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 Q RQ L ++ I S+G+ A T + W++++ I +++L+T+ + + Sbjct: 41 QEVRQKLYVAKANQQTIYQSRGQGAFTLNEWIEQWLVIVKK-----EVKLSTFASYSYKL 95 Query: 117 S-LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMA-QVVRSVLIDVFKEAQHYGEVPP 174 S + + G ++ +D + +L+++ IA G + V+ +L A + Sbjct: 96 SNYVLKTMGDSALNEIDDLRLNKLVEDLIAQGLSKSTICVIFGILSRALNHAVKAKHLKS 155 Query: 175 GYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 ++ +P+R+ R L +EE KK+ ++A + G ++++AL TG R+G+++ ++ Sbjct: 156 NPCSTISLPKPKRRHIRA-LDIEEQKKLENVAYKNPQQQGLSVIVALHTGLRIGELAALR 214 Query: 235 FSDI--WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 + DI D +HV + T ++++ + + + R +S + + + Sbjct: 215 WEDINFKKDTIHV--KHTFQRVSVSSFGESTQLYYDCTKTINSERIIPMSNTVKNALKCQ 272 Query: 293 SQAERGAQV--------KANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERLYKEQ 343 + +G V + LT F K RD ++D FH+ R + + R + Sbjct: 273 KEHSQGKFVFSRNNKPCEPRLLTYYFHKLRDKVQLD-----KVHFHQLRHTFATRCLEST 327 Query: 344 G--LDTQKLLGHKTQQQT-DRYHD 364 + LLGH + Q T D Y D Sbjct: 328 SDIVSVSALLGHSSTQMTLDIYAD 351 >UniRef50_UPI00016AE785 Phage integrase:Phage integrase, N-terminal SAM-like protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AE785 Length = 238 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 18/171 (10%) Query: 146 AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI 205 AGR R + + VL +F A+ G + NP L K+ + + ++K++D Sbjct: 23 AGRVRANRDI-EVLSHMFNFAREIG-MTKAANPCLGIKKYSESGRDVYVEDDLFRKVYDH 80 Query: 206 ADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAI 265 AD R +AM LA +TGQ+ D DI D+ LH+ Q KTG K+ + ++ L A+ Sbjct: 81 ADQPTR---DAMDLAYLTGQQPQDTLPHDERDIRDNFLHIDQGKTGKKLRMEVTGALMAV 137 Query: 266 NWSLRDVVARCRDYAV--SAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 +R AR Y + +A +V+ E+G ++ +TL F AR Sbjct: 138 INRIR---ARKAGYKIVSTALVVN--------EKGERMTLDTLQRRFRDAR 177 >UniRef50_B0VK72 Integrase n=1 Tax=Azospirillum phage Cd RepID=B0VK72_9CAUD Length = 295 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 193 RLSLEEWKKIFD-----IADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQ 247 RL EW++ D + + + ++AL TGQR D+ R + DI D ++V+Q Sbjct: 102 RLKTGEWRRWTDAELDKFYQSAYEALRRVFVMALFTGQRRADLCRATWGDIQDGGINVVQ 161 Query: 248 EKTGSKIAIPL 258 +KTG+ + IPL Sbjct: 162 QKTGAHLWIPL 172 >UniRef50_D2YQV3 Phage integrase family protein n=2 Tax=Vibrio RepID=D2YQV3_VIBMI Length = 402 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 G K ++ + +DI +LLD + +P +RS+++ +F+ A +G V NP + Sbjct: 147 GKKPLTDIGQQDIQKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYV--DSNPGQYIR 204 Query: 184 QPRRKITRQR-LSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 + + RQR LS E + +R NA+ AL+TG R+G+I+ K+ + D Sbjct: 205 KLKENNVRQRFLSRAEVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWECLTVD 264 >UniRef50_B2UKS9 Integrase family protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UKS9_AKKM8 Length = 416 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 24/228 (10%) Query: 44 NEAEAIAIATEANTRL---AEQRTRQILAISDRIATSKGKAITTSTWLDRY-QAIQDDRL 99 +A+ +A A E+ R A Q R I A+S + + + WLD + + I + L Sbjct: 66 TKAQRLADALESTARANLPAYQLRRAISALSTELTGESMEMPSVKLWLDDHMRRITRNGL 125 Query: 100 KSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEY----IAAGRPRMAQVV 155 K I YKQ R G ++ +D R +LD++ ++ P A + Sbjct: 126 KPASI--ANYKQA---FDKFRASMGERINLPLD-RITPLMLDDFKNHLLSRVSPSTANIA 179 Query: 156 RSVLIDVFKEAQHYGEVPPGYNPALATKQPRR--KITRQRLSLEEWKKIFDIADATHRYM 213 +++ F+ A Y + NP A +P + + R++ LEE +K+ + R M Sbjct: 180 LTLVSAAFQAAVDYKIIE--TNPFTAITKPHKGKAVKRRKFELEELEKVMAACNPEWRSM 237 Query: 214 GNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQ---EKTGSKIAIPL 258 L GQRLGD++ +++S + D+ VI+ +K G + IP+ Sbjct: 238 VKTCLY--TGGQRLGDVATLRWSQV-DEKRGVIRMTTQKKGKPLMIPI 282 >UniRef50_C7DB29 Phage integrase family protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DB29_9RHOB Length = 336 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 31/49 (63%) Query: 216 AMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNA 264 AM L + TGQR+GD+ M++SDI D V Q KTG ++ IP+ L A Sbjct: 184 AMELCVGTGQRIGDVIEMRWSDIQDGGFAVRQNKTGKQLWIPILPELQA 232 >UniRef50_A9C3M6 Integrase family protein n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C3M6_DELAS Length = 342 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 37/243 (15%) Query: 136 IAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLS 195 I + L + + +PR RS+L ++ + A+ G PPG NP + K K + ++ Sbjct: 108 IVEFLKHF--SDKPRTYNAYRSMLRELMRFAEEKGYRPPGTNPVDSLKTMSVKARTRYIT 165 Query: 196 LEEWKKI---FDIADATHRYMGNAMLLALV-----TGQRLGDISRMKFSDIWDDHLHV-- 245 E ++I D R + AL+ TGQR+GD+ +++SD+ + Sbjct: 166 DSEVRRIKVAVMYGDDGKRTRSGHTICALIDMAYLTGQRIGDLLTLRWSDVGKQGITFQP 225 Query: 246 --IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAY--LVHFFRSTSQAERGAQV 301 + TG+++ I + RL + LR + + D+ + + S A + A Sbjct: 226 AKTEGSTGAQVLIAWTQRLRNVVDRLRALPNQSPDFVFCTLQGQPYTYSGASTAWKRAVK 285 Query: 302 KANTLTMNFS--KARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQT 359 +A +F + + L +D G G ++ Q++ H TQ QT Sbjct: 286 RAGVKDCHFHDLRGKALTDVDRGRGI-------------------MEAQRMGAHSTQSQT 326 Query: 360 DRY 362 Y Sbjct: 327 ADY 329 >UniRef50_Q396R9 Putative uncharacterized protein n=1 Tax=Burkholderia sp. 383 RepID=Q396R9_BURS3 Length = 72 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 2/46 (4%) Query: 323 EGSPATFHEQRSLSERLYKEQG-LDTQKLLGHKTQQQTDRYHDDRG 367 E +P +FHE RSLS+RLY +QG +DT+ LLGH + + Y D RG Sbjct: 11 ENAP-SFHEIRSLSKRLYDKQGNVDTKALLGHMSDMSAETYADARG 55 >UniRef50_Q0RYV8 Probable integrase/recombinase n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0RYV8_RHOSR Length = 410 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 26/196 (13%) Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGN---AML-LALVTGQRLGDISRMKF 235 L+ PRR T R + +E ++ + D T +GN AM+ LA+ TG R GDI+ ++ Sbjct: 202 LSQVSPRRIRTLPRFTQDEVARLLAVID-TATAVGNRDYAMVRLAVSTGLRCGDITDLRL 260 Query: 236 SDI-WD-DHLHVIQEKTGSKIAIPLSLRL-NAINWSLRDVVARCRDYAVSAYLVHFFRST 292 I W D + ++Q KT + +A+PL+ NA+ D V R + + + F R+ Sbjct: 261 ESIDWRRDEIRIVQRKTAATLALPLTAEAGNAVA----DYVLNARPASDAPEV--FLRAN 314 Query: 293 SQAERGAQVKANTLTMNFSKARDLAR--IDWGEGSPATFHE-QRSLSERLYKEQGLD--- 346 + VK T R LA I G TFH +R+L RL E G + Sbjct: 315 AP-----HVKLTGPTGALIMRRYLAAAGIHHKAGDGKTFHALRRTLGTRLI-ETGTELPM 368 Query: 347 TQKLLGHKTQQQTDRY 362 T ++LGH + RY Sbjct: 369 TAQILGHARIDSSKRY 384 >UniRef50_A6T076 Phage-related integrase n=2 Tax=Burkholderiales RepID=A6T076_JANMA Length = 342 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 24/181 (13%) Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAI 256 E +K +++ A R +AM L +TGQR GD + +I D +L + Q KT K+ I Sbjct: 171 EVFKAVWECASEPLR---DAMDLTYLTGQRPGDALKSTEHEISDSYLSIQQGKTKQKLRI 227 Query: 257 PLSLRLNAINWSLRDVVARCRDYAV--SAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 + L A+ + + R R Y V +A LV+ +G Q+ L +F AR Sbjct: 228 AIVGELAAL---IDRIKERKRKYKVVHTALLVN--------TQGMQLTKAVLRKHFDAAR 276 Query: 315 DLARIDWGEGSPAT----FHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTDRYHDDRG 367 + A + E P F++ R+ + E+ +D Q LLGH++ + T R++ RG Sbjct: 277 EKACEKYPELEPEIKAFWFYDLRAKAADDKAEE-IDEQAASDLLGHESTKTTRRHYLRRG 335 Query: 368 K 368 K Sbjct: 336 K 336 >UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AD797 Length = 339 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 81/319 (25%), Positives = 126/319 (39%), Gaps = 69/319 (21%) Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 R T K ++ TW R +AIQ D + S + KL AV Sbjct: 68 RDVTPSKKGESSETW--RLKAIQRDEIGSYSV--------------------GKLTPAV- 104 Query: 133 VRDIAQLLDEYIAA--GRPRMAQVVR---SVLIDVFKEAQHYGEVPPGYNPALATKQPRR 187 +A D +A GRP V ++L V + A+ + NP ++P+ Sbjct: 105 ---VANWRDRRLAGTDGRPVSGSTVNREMNLLHHVLETARKEWGLGAPVNPVSEVRRPKN 161 Query: 188 KITRQR-LSLEEWKKIFDIADATHR------YMGNAMLLALVTGQRLGDISRMKFSDIWD 240 R+R L+ +E + TH Y+ + + LAL TG R G+I +++ + Sbjct: 162 SPARERRLTSDEKVALLAACRQTHSRSGRQSYLADVVELALETGMRQGEIIKLEIEQVRL 221 Query: 241 DHLHVIQEKTGSKI----AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 D V G+K +PLS R I L+ V+ R+T + Sbjct: 222 DDRFVGLRAGGTKTEEARTVPLSTRAAEI---LKSVIGD--------------RTTGRVW 264 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL-DTQ--KLLGH 353 G + ++ + F +ARD A I TFH+ R + + E GL DT+ + GH Sbjct: 265 VG--LTSDAVKRAFIRARDRAGI-----KDLTFHDSRHDATTRFVELGLTDTEVMSITGH 317 Query: 354 KTQQQTDRYHDDRGKGWSK 372 KTQ +Y R K +K Sbjct: 318 KTQSMMRKYTHLRAKDLAK 336 >UniRef50_Q88G06 Phage integrase, putative n=12 Tax=Gammaproteobacteria RepID=Q88G06_PSEPK Length = 349 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 33/250 (13%) Query: 128 ISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR 187 I A+ IAQ D A R A ++L VF A+ +G + NP L ++ + Sbjct: 108 IDAITPAMIAQYRDSRSAKTR---ANREIALLSHVFNTAREWG-LTTRDNPCLGVRKNKE 163 Query: 188 KITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQ 247 K + W+ +++ A + +AM LA +TGQR D+ M+ D+ +L V Q Sbjct: 164 KPRDFYANETVWQAVYEEAPPE---LKDAMDLAYLTGQRPSDVLSMRKDDMEGIYLLVSQ 220 Query: 248 EKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLT 307 KTG ++ I L ++ + SL ++ R + S +L FF E G ++ L Sbjct: 221 GKTGKRLRI--VLEVDGVKNSLGLLLERIM-HRTSGHLSPFFIVN---EHGKRMSWPMLR 274 Query: 308 MNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQK--------------LLGH 353 ++ AR+ AR+ A ++ L+ R+ + Q D + LLGH Sbjct: 275 NRWADAREDARVK------AEVEKKPDLANRIAQFQFRDIRPKAASEINDLSDASVLLGH 328 Query: 354 KTQQQTDRYH 363 + T+R + Sbjct: 329 SKEGITERVY 338 >UniRef50_A1B9G7 Phage integrase family protein n=3 Tax=Rhodobacteraceae RepID=A1B9G7_PARDP Length = 335 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%) Query: 219 LALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAI 265 + L TGQR+GD+ +M++ DI D + V Q+KTG+ I +P + L AI Sbjct: 182 MLLGTGQRIGDVLKMRWDDIEDGGIWVRQQKTGAGIFVPFTDELAAI 228 >UniRef50_B9JWL0 Phage-related integrase n=1 Tax=Agrobacterium vitis S4 RepID=B9JWL0_AGRVS Length = 346 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 9/123 (7%) Query: 146 AGRPRMAQVVRSVLIDVFKEAQHYGEVP--PGYNPA-LATKQPRRKITRQRLSLEEWKKI 202 A PR A + S+L + H ++ P N LA RR+I L ++ + Sbjct: 120 ATTPRAADIAWSILQRIMAFGVHMEKLKRNPCTNAGRLAESGTRREIIWTPPDLSRFRAV 179 Query: 203 FDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRL 262 R + +A+LLA+ TGQR GD+ ++++S H+ + Q KTG ++AI +S L Sbjct: 180 ------ASRQLADALLLAIWTGQRQGDLLKLQWSAYDGKHIRLKQGKTGRRVAILVSGTL 233 Query: 263 NAI 265 + Sbjct: 234 GKM 236 >UniRef50_B7V6G8 Integrase n=5 Tax=root RepID=B7V6G8_PSEA8 Length = 349 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 47/218 (21%) Query: 177 NPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 NP K+ + + ++ E WK +++ A R M LA +TGQR D+ +++ + Sbjct: 157 NPCRGVKKNKEQPRDVYVTDEVWKALYEKAPDDLRV---TMDLAYLTGQRPADVRKLRKN 213 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA- 295 D+ D+L V Q KT K L +RL + + + +LV S S A Sbjct: 214 DVSGDYLLVGQNKTSRK----LRIRLRRADGQMTQL----------GHLVESIASDSPAL 259 Query: 296 ---ERGAQVKANTLTMNFSKAR-------------DLAR----IDWGEGSPATFHEQRSL 335 E+G + L F AR DLAR + + P + SL Sbjct: 260 VTNEKGQPMTEKMLRTRFDTARKAAADEAIKAGDQDLAREIMQFQFRDIRPKAASDIESL 319 Query: 336 SERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKV 373 + D LLGH TQ+ T R + GK + V Sbjct: 320 A---------DASDLLGHTTQEITKRVYRRIGKAVNPV 348 >UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KC37_9RHOB Length = 385 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%) Query: 128 ISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR 187 ++++ RD+ +L+D+ + AG P A V + F + + +PA A + P + Sbjct: 135 VASITKRDVNRLIDKIVDAGSPVAANRVLAFTKRFFSWCKERDILE--LSPAEAIRPPSK 192 Query: 188 KITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD--IWDDHLH 244 + TR R L+LEE K + D G L L+TG RL ++S+ + + I D L+ Sbjct: 193 EKTRDRVLTLEEIKGFWAACDQMGYPWGPIFQLLLLTGARLREVSQASWGEVSIADGTLN 252 Query: 245 VIQEKTGSKIAIPLSLRLNAIN 266 + +T + A + L AIN Sbjct: 253 LPARRTKNGRAHQIQLSDQAIN 274 >UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanella RepID=A4Y9I4_SHEPC Length = 432 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 50/262 (19%) Query: 27 YWRYKHPVTGK----------FHALGTNEAEAIA-----IATEANTRLAEQRTRQILAIS 71 YW ++ V GK + A+ EA+A A +A + LAE+ +Q + I Sbjct: 45 YWEVRYSVNGKRRSMVPNGGVYPAMSLVEAKAEAAKVKLLAKQGIDPLAERERQQEITIK 104 Query: 72 DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAV 131 T + D + RLK +I + Y + KP G ++ V Sbjct: 105 -----------TVNDLFDDWYQCTAPRLKHPEIPMRMYTKDIKPA------IGQLKVTDV 147 Query: 132 DVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR----R 187 + RDI +L + + + RP +A +F A +V G NPA A Sbjct: 148 NARDIRAILHKVVKSNRPTVANKTLLFCKQLFNHACKL-DVASG-NPAAAFNTADAGGLE 205 Query: 188 KITRQRLSLEEWKKIFDIADAT------HRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 K + LSL E F + + Y+ A+LL L G R G++ K+S+ D Sbjct: 206 KNRTRVLSLNEIAAAFPVLRNSRPIFSHENYLAVALLLCL--GVRKGELIAAKWSEFDFD 263 Query: 242 H----LHVIQEKTGSKIAIPLS 259 + + KTG I IPLS Sbjct: 264 QQVWRMPKERSKTGVGITIPLS 285 >UniRef50_Q5P749 Similar to phage-related integrase n=3 Tax=Bacteria RepID=Q5P749_AZOSE Length = 411 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 6/123 (4%) Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQV--VRSVLIDVFKEAQHYGEVPPGY 176 L++ G K +S +D IA+ L + AG+ +A V +R++ VF +A +G + + Sbjct: 135 LQKPMGNKRLSEIDRAMIAKALSDAEKAGK-SVATVRNIRALASGVFGKAVEWGRL--DF 191 Query: 177 NPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 NPA K +K++R R L +E + F M + +LLAL+TG R ++ M + Sbjct: 192 NPAQGVKVAGKKVSRDRFLQADELPRFFAAVAEEDDTMRDFILLALLTGARRANVCAMHW 251 Query: 236 SDI 238 ++ Sbjct: 252 HEL 254 >UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2 Tax=Rhodobacterales RepID=Q0FPA2_9RHOB Length = 341 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 29/254 (11%) Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVR--SVLIDVFKEAQHYGEVPPG 175 LR+ + +S V + ++ DE + RP V+R +L +F+ A+ +VP Sbjct: 89 FLRQTWVDRTLSKVTPQVFSRYRDERLRTVRP--GTVIRDLGLLRSIFEVARLEWDVPLQ 146 Query: 176 YNPALATKQPRRKITRQRLSLEEWKKIFDIADATHR--YMGNAMLLALVTGQRLGDISRM 233 NP ++P+ R+R + A ++R ++ ++LA+ TG R G+I + Sbjct: 147 NNPLANVRKPKAPDPRERRLRPGELDLLLTACQSYRNDWLRAGIVLAIETGMRRGEILSI 206 Query: 234 KFSDIWDD--HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 ++ D+ D L + + K G IPL+ A++ LRD++ C D +V + Sbjct: 207 RWCDVSMDTSTLTIRETKNGHARRIPLT--AVAVD-VLRDMLEVCDDSSVRIF------- 256 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLL 351 V AN + + + D+ + FH+ R + + E GL ++ Sbjct: 257 --------PVSANAFRQCWQRCKGKVAEDYKQIESLRFHDLRHEAVSRFFEMGLSVPEVA 308 Query: 352 ---GHKTQQQTDRY 362 GH+ + RY Sbjct: 309 LISGHRDPRMLFRY 322 >UniRef50_A5KPC6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A5KPC6_9FIRM Length = 400 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 19/167 (11%) Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNT-YKQKAKPVSLLRERAGMKLISAVDVRDIA 137 G++IT + W + + K +++ T YK + + ++ G + + + Sbjct: 63 GESITLNAWYVTWTEL----YKKKTVKMTTIYKNHSYYNARVKNSIGKMYLQDIKTYHVQ 118 Query: 138 QLLDEYIAAGRPR-MAQVVRSVLIDVFKEAQHYGEVPPGY---NPALATKQP-RRKITRQ 192 + ++E I +G +R +L D+F +A V Y NP +A + P + K R+ Sbjct: 119 KFINELIDSGLAHGTVSNIRFMLSDMFDKA-----VLSEYIRKNPCIAVEMPPKVKKERR 173 Query: 193 RLSLEEWKKIFDIADATHRYMG-NAMLLALVTGQRLGDISRMKFSDI 238 L+ EE KK F A + Y+ N + A+ TG R+G++ +K+ D Sbjct: 174 VLTREEQKKFFTFASS---YIHINVLKFAVTTGCRIGEVLGLKWEDC 217 >UniRef50_C9PR11 Putative uncharacterized protein n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PR11_9PAST Length = 177 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 23/170 (13%) Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPL 258 +K +D+A+ M + M +A +TGQR DI M I D LH+ Q+KT ++ + Sbjct: 13 YKIFYDLANQD---MKDLMDIAYLTGQRPVDIVGMTVHQIHDGILHINQKKTKKRLRFKM 69 Query: 259 SLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR 318 + +L I + R ++ + V F Q +R ++ TLT FS R+LA Sbjct: 70 TGQLATI------IERRIKNTSQ----VFLF----QNKRKQKLSRQTLTNWFSDLRELAL 115 Query: 319 IDW----GEGSPATFHEQRSLSER-LYKEQGLDTQKL-LGHKTQQQTDRY 362 + E F + R+ S ++ Q +T K+ LGH Q+ T RY Sbjct: 116 AQYPSLESEIKEVQFRDLRAKSATDIFLLQDTETAKIQLGHTDQKTTKRY 165 >UniRef50_A3VAJ4 Site-specific recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VAJ4_9RHOB Length = 392 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 5/125 (4%) Query: 117 SLLRERAGMK--LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPP 174 S+L + G+K I + +D++++LD IA G P A S + + G++ Sbjct: 129 SVLHKFDGLKDRPIDQIRRQDVSKVLDGIIANGTPTRANRALSAIKKLMNWCVMRGDIE- 187 Query: 175 GYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRM 233 +P + P R++ R R LS E + I+ +DA G + L L++GQR +++ M Sbjct: 188 -TSPVALLRPPTREVQRDRVLSDAEIRAIWQHSDAEDYPFGPFLKLLLISGQRRSEVAGM 246 Query: 234 KFSDI 238 ++S++ Sbjct: 247 RWSEL 251 >UniRef50_B9QS39 Site-specific recombinase, phage integrase family protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QS39_9RHOB Length = 416 Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 14/176 (7%) Query: 103 DIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLID 161 D++ NT +++ + + +++ + G +S V+ +A + + Y A + RMA + + L Sbjct: 120 DLKPNTLRERERQLDNVILPKVGDIRLSKVNYSVLASVWEPYEVADKKRMASALFATLRH 179 Query: 162 VFKEAQHYGEVPPGYNPALATKQPRRKITRQRL-----SLEEWKKIFDIADAT--HRYMG 214 +F EA G + NP L K + + R+R ++ E + DA + Sbjct: 180 LFNEAHERGRI--AENPLLGRKLKIKPVRRKRYLRVNETINEVAAFWHGLDAVPLDQVTK 237 Query: 215 NAMLLALVTGQRLGDISRMKFSDIWDDHLHVI---QEKTGSKIAIPLS-LRLNAIN 266 A+ L L+TGQR +I M+ S+ D L + + K G + +P+S + L+ IN Sbjct: 238 IALRLRLLTGQRTEEIYGMRESEFIADDLWFLSADRTKNGEEHIVPMSPMALDLIN 293 >UniRef50_C5A9R6 Phage integrase:Phage integrase, N-terminal SAM-like protein n=4 Tax=Burkholderia RepID=C5A9R6_BURGB Length = 342 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 24/192 (12%) Query: 177 NPALATKQPRRKITRQRLSLEE--WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 NP + +++ RQ + +++ + ++ +AD R NAM LA + QR D+ R++ Sbjct: 158 NPCAGVRG-KKETGRQAILIDDELYAAVYTVADQPLR---NAMDLADLCAQRPSDVLRVQ 213 Query: 235 FSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 S+I +L +KTG+ + + ++ L A+ L + R VS YL+ + Sbjct: 214 RSNIVRGNLIFRTQKTGAFVTVQITGDLAALIERL--LAWRGSKVDVSPYLL-------R 264 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFH----EQRSLSERLYKEQGLDTQKL 350 E G + L F KAR+ A ID A F R ++ + E Q+L Sbjct: 265 DEEGYPLTKGKLRSRFDKARERAGID-----KAKFQFRDLRARGVTHKTIDEGLEAGQRL 319 Query: 351 LGHKTQQQTDRY 362 GH T RY Sbjct: 320 AGHSGPGMTARY 331 >UniRef50_UPI0000383FB1 COG0582: Integrase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000383FB1 Length = 450 Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 7/118 (5%) Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYG--EVPPGYNPALATK 183 K+++ + RD+ +LD A G A R F+ +VPP L Sbjct: 165 KMVTEISKRDVLDVLDAITARGALAKAASQRRYFSKFFRWCAERDLIQVPP----TLTVP 220 Query: 184 QPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 +P+ +T+ R LS+EE + ++ ADA G + L ++TGQR +++ +S+ D Sbjct: 221 KPQAAVTKDRVLSVEELRDVWAAADAVGHPFGPMVKLLILTGQREKEVAEAVWSEFAD 278 >UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWI5_9AQUI Length = 369 Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 21/203 (10%) Query: 37 KFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQD 96 K+ GT + EA + E +LAE + A S + + WL +Y Sbjct: 24 KWFPAGTTKREAEKVLAE---KLAE-----LNAGSSVLPPEVRFSFFCEEWLSKYA---- 71 Query: 97 DRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVV 155 G ++ +T+++ + + R G K +S + + + E ++ P Sbjct: 72 ----KGSVKPSTFRRYEGIIRNHFMPRFGDKKLSRITTGMLQGYVAERLSQVSPTTVLQE 127 Query: 156 RSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGN 215 +L ++FK AQ +G + +NPA ++PRR+ ++ + + +++ + + TH + Sbjct: 128 VVLLKEMFKHAQSWGYI--KHNPAQNLQRPRRE--KKEIDILTPEEVEFLLENTHEHYRV 183 Query: 216 AMLLALVTGQRLGDISRMKFSDI 238 A L A++TG R G++ +K+ DI Sbjct: 184 AFLTAVMTGLRAGELWGLKWDDI 206 >UniRef50_A5ELA9 Putative phage-like integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5ELA9_BRASB Length = 434 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 20/170 (11%) Query: 177 NPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 NP L +P +R+R LS E KK + G + L L+TGQRL +I+R+ Sbjct: 236 NPVLGLSKPPNSPSRRRFLSDAEIKKFWAACTTLGSPFGPMLKLLLLTGQRLNEIARLHD 295 Query: 236 SDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 +++ D+ + + +T K A+P + L+++ ++V+A + S Y+ F + +A Sbjct: 296 TELTDEAIRLPGSRT--KNALPHDVPLSSLA---KEVLAEVQRVPNSKYV---FSTNGRA 347 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL 345 KA S+ DL I+ P FH+ R + E G+ Sbjct: 348 PVSGFSKAK------SRIDDLLNIE-----PWVFHDLRRSAATGMAEIGI 386 >UniRef50_C9LR41 Toxin-antitoxin system, toxin component, PIN family n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR41_9FIRM Length = 375 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 63/310 (20%), Positives = 133/310 (42%), Gaps = 41/310 (13%) Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDI- 136 K + +T + + + + ++ +K+ +RL K + ++ G + I ++ R++ Sbjct: 55 KNQNVTVNQYFNEWIIQKEQEVKATTVRLYKIIYKNQIAQIM----GTRKIQDLERRELV 110 Query: 137 ---AQLLDEYIAAGRPRMAQVVRSVL-------IDVFKEAQHYGEVPPGYNPALATKQPR 186 ++L +Y + + +++ +L I A++ ++ N +A + Sbjct: 111 SFQSKLGQQYTTSTTKKAINIIKQLLESAVIDGITTVNAAEYLPKIKKKSNERVARETIH 170 Query: 187 RKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLH 244 R +T EE K A Y NA+ L L TG R G++ + +SDI ++ +H Sbjct: 171 RALTE-----EELKLFLKYAQTDWNY--NAICLLLATGMRAGELGALYWSDIDYKNNVIH 223 Query: 245 VIQEKT---------GSKIAIPLSLRLNAINWSLRDVVARCRDYA---VSAYLVHFFRST 292 + + T G+ S R +N +R+++++ R++ + ++ + Sbjct: 224 ITKTVTVNQNGKSIIGTTPKTQKSKRDIPLNAEIRNILSKQRNFISMWTAERIIKLNDTV 283 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQK 349 AE V A T+ N S R L RI+ E P T H RS + ++G+ ++ Sbjct: 284 FNAEMQGIVYAKTI--NNSIKRILKRIEEIEIKPFTAHAFRSTFASMAVKKGMPLNVLKE 341 Query: 350 LLGHKTQQQT 359 ++GH + T Sbjct: 342 IMGHASYSMT 351 >UniRef50_A3D8Y1 Phage integrase family protein n=4 Tax=Shewanella RepID=A3D8Y1_SHEB5 Length = 451 Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Query: 159 LIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMG---- 214 L VFK A G NP + +Q +R++ + LS+ E +++ D G Sbjct: 166 LQSVFKLALRQGHC--LTNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQ 223 Query: 215 --NAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKI 254 + + L L+TG RL +I+ +K + + LH+ KTG+K+ Sbjct: 224 CADILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV 265 >UniRef50_Q9PD24 Phage-related protein n=2 Tax=Xylella fastidiosa RepID=Q9PD24_XYLFA Length = 284 Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 29/145 (20%) Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPL 258 ++ ++ AD T R +AM LA +TGQR+ D+ M I + L + Q KTG K+AI Sbjct: 111 YRAVYHAADQTLR---DAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAI-- 165 Query: 259 SLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA--ERGAQVKANTLTMNFSKARDL 316 AI L ++ R D+ L RST +G ++ L F KAR Sbjct: 166 -----AITGELAVLIKRIFDHKRGLKL----RSTRLIVDAKGLELSRTGLRYRFDKARVA 216 Query: 317 ARID-------------WGEGSPAT 328 A I +GEG P + Sbjct: 217 AGIAKEVFQFRDDRQGRFGEGHPPS 241 >UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsugamushi RepID=A5CCP8_ORITB Length = 414 Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 23/180 (12%) Query: 87 WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAA 146 +++ Y I K R++TY Q L E K IS + + DI + ++ Sbjct: 132 YIEEYAKIYTINWKENADRVHTYAQA------LYE----KKISKIRMSDIEPIFNDISKE 181 Query: 147 GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI- 205 G+ A + + L +F +A +G + NP L +Q + + +RLS +E + + Sbjct: 182 GKYATANALLATLRTIFNKAIKWGLIEN--NPTLGIEQHKLQARERRLSYDEMGRFLQVL 239 Query: 206 ADATHRYMGNAMLLALVTGQRLGDISRMKFSD------IWDDHLHVIQEKTGSKIAIPLS 259 + + LLAL TG R ++ M++ + IW H+ + K G IPL+ Sbjct: 240 CGEASPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIW----HIPKTKNGKAQNIPLT 295 >UniRef50_B0K9M1 Phage integrase family protein n=18 Tax=Clostridia RepID=B0K9M1_THEP3 Length = 330 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 17/154 (11%) Query: 127 LISAVDVRDIAQLLDEYIAA-------GRPRMAQVVRSVLIDVFKEAQHYGEVPPGY--N 177 LI +VD+ D+ L+ ++A R R +RS ++K+A+ + P + Sbjct: 78 LIESVDLNDLYAYLN-FVANERSNTPHARARKVASLRSFYNYLYKKAKVLSKNPTQELES 136 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAML-LALVTGQRLGDISRMKFS 236 P L+ +QP L+L+E KK+ + D + A++ L L G R+ ++ + Sbjct: 137 PKLSVRQP------IYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLD 190 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLR 270 DI DD L VI + + +NAIN L+ Sbjct: 191 DIKDDKLTVIGKGNKQRTVYLNDACINAINTYLK 224 >UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM9_9DELT Length = 409 Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 13/117 (11%) Query: 130 AVDV--RDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEA--QHYGEVPPGYNPALATKQP 185 AVD+ RD+ LL++ + G P MA ++ +F A + E+ +P K P Sbjct: 137 AVDISKRDVILLLEKIVDRGSPGMANNCFQIIRKMFNFAVDREILEI----SPCTGVKMP 192 Query: 186 RRKITRQRLSLEEWKKIF----DIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 K+ R R+ EE ++ + A +H + A+ L LVT QR G++ M FS+I Sbjct: 193 APKMARDRVLSEEEIRVLWSGLERAKISHE-VQRAIKLILVTAQRPGEVMGMDFSEI 248 >UniRef50_B5YSQ6 Site-specific recombinase, phage integrase family n=58 Tax=root RepID=B5YSQ6_ECO5E Length = 359 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 17/183 (9%) Query: 177 NPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 NP + + K + ++ +E++ + +A + AM +A + R+ D+ +K+ Sbjct: 148 NPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLP---VFIAMEIAYLCAARVSDVLSLKWE 204 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 I +D + + Q KTG K S RL A + + + SAY++ + Sbjct: 205 QIGNDGIFIQQGKTGKKQIKAWSPRLQA-------AIEKAKQLPTSAYVI-------SNQ 250 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQ 356 G + + +AR+ A G + TFH+ ++ Y+ D Q GHKT+ Sbjct: 251 YGNRYMYKGFNEMWVEARNHAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTE 310 Query: 357 QQT 359 Q Sbjct: 311 GQV 313 >UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ50_PELPD Length = 427 Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 13/124 (10%) Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 R G + ++ + RD+ +LDE G P MA + + +F A + NP L Sbjct: 137 RWGKRKLTDIKRRDLVLVLDEIKERGAPVMANRILAYTRKMFSWALERAAL--EVNPFLM 194 Query: 182 TKQPRRKITRQRLSLEEWKKIF-------DIADATHRYMGNAMLLALVTGQRLGDISRMK 234 +P + +R+R+ E+ K F ++D+ R A+ L LVTGQR G+I M Sbjct: 195 MSRPNDETSRERVLSEKEIKTFWHNLDECKMSDSIKR----ALKLILVTGQRPGEIIGMH 250 Query: 235 FSDI 238 ++I Sbjct: 251 RNEI 254 >UniRef50_A7XXG4 Phage XerD-like integrase n=2 Tax=unclassified Siphoviridae RepID=A7XXG4_9CAUD Length = 327 Score = 40.8 bits (94), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 6/89 (6%) Query: 176 YNPALATKQPRRKI-TRQRLSLEEWKKIFDIA--DATHRYMGNAML-LALVTGQRLGDIS 231 +NP K+P+ + + L+L+E K +F A D +RY ++L LAL +G R +I Sbjct: 126 HNPFKGRKRPKEEFYLKDVLTLDEIKALFKAAMRDPRYRYRNASILALALGSGLRAAEIC 185 Query: 232 RMKFSDI-WDDHLHVIQEKTGSKIAIPLS 259 R++ +DI WD+ + KTG + +P++ Sbjct: 186 RLQVADILWDEMAVRVHGKTGHGV-VPVT 213 >UniRef50_Q2NTS7 Phage integrase n=25 Tax=Enterobacteriaceae RepID=Q2NTS7_SODGM Length = 338 Score = 40.4 bits (93), Expect = 0.099, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 41/202 (20%) Query: 177 NPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 NP +Q + + + ++ E++ ++ +A AT R AM +A + R D+ + S Sbjct: 149 NPCSGVRQFKEEARDRYITDAEYEALYSVAPATVRI---AMEIAYLCCARQSDVLSLTKS 205 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVH--------- 287 + DD + + Q KTG K + RL + L D + + S Y++H Sbjct: 206 QLLDDGIFICQGKTGKKQIKAWTERLKKV-IDLADSLPASQG-VNSIYVLHQPNGNRYTR 263 Query: 288 --FFRSTSQAERGAQVKANTLTMNFS----KARDLARIDWGEGSPATFHEQRSLSERLYK 341 F S ++A A V LT +F+ KA+ ++ + EGS LSE+ Sbjct: 264 DGFNSSWAKARAKASVLHPELTFDFTFHDLKAKGISDL---EGS---------LSEK--- 308 Query: 342 EQGLDTQKLLGHKTQQQTDRYH 363 Q + GHK+ QT RY+ Sbjct: 309 ------QAISGHKSIGQTARYN 324 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C9Y1M6 Prophage lambda integrase n=26 Tax=root RepID=C9... 480 e-134 UniRef50_P27077 Integrase n=36 Tax=root RepID=VINT_BPP21 462 e-129 UniRef50_B2U001 Site-specific recombinase, phage integrase famil... 439 e-122 UniRef50_B5XR66 Site-specific recombinase, phage integrase famil... 430 e-119 UniRef50_C8Q8H3 Lambda integrase n=1 Tax=Pantoea sp. At-9b RepID... 418 e-115 UniRef50_B5YWJ6 Phage integrase family protein n=25 Tax=Enteroba... 406 e-111 UniRef50_A6WME5 Phage integrase family protein n=1 Tax=Shewanell... 383 e-105 UniRef50_P16407 Integrase n=20 Tax=root RepID=VINT_BPHK0 382 e-105 UniRef50_P27078 Integrase n=23 Tax=root RepID=VINT_BP434 377 e-103 UniRef50_Q88MN9 Phage integrase, putative n=7 Tax=Pseudomonas Re... 374 e-102 UniRef50_B2Q6E8 Putative uncharacterized protein n=2 Tax=Provide... 358 2e-97 UniRef50_C4TU56 Phage integrase n=1 Tax=Yersinia kristensenii AT... 352 1e-95 UniRef50_B4SVC2 Phage integrase n=42 Tax=Enterobacteriaceae RepI... 352 1e-95 UniRef50_Q2NUH1 Phage integrase n=2 Tax=Sodalis glossinidius str... 348 2e-94 UniRef50_Q2W5Y0 Integrase n=1 Tax=Magnetospirillum magneticum AM... 338 2e-91 UniRef50_D2TZP7 Phage integrase n=3 Tax=Arsenophonus nasoniae Re... 337 6e-91 UniRef50_Q31HX1 Phage integrase n=1 Tax=Thiomicrospira crunogena... 335 1e-90 UniRef50_C4I537 Bacteriophage lambda integrase, N-domain family ... 323 8e-87 UniRef50_C5BBQ8 Integrase n=3 Tax=Edwardsiella RepID=C5BBQ8_EDWI9 317 6e-85 UniRef50_D0L1C6 Lambda integrase n=1 Tax=Halothiobacillus neapol... 313 6e-84 UniRef50_A7FKY0 Integrase n=1 Tax=Yersinia pseudotuberculosis IP... 306 1e-81 UniRef50_B4ESJ2 Integrase n=2 Tax=Proteus mirabilis RepID=B4ESJ2... 305 2e-81 UniRef50_B4T7X0 Integrase n=14 Tax=Enterobacteriaceae RepID=B4T7... 300 8e-80 UniRef50_A1JLQ1 Phage integrase n=7 Tax=Yersinia RepID=A1JLQ1_YERE8 297 7e-79 UniRef50_B7V4V5 Phage integrase, putative n=2 Tax=Pseudomonas Re... 287 6e-76 UniRef50_C5CJJ9 Integrase family protein n=1 Tax=Variovorax para... 282 1e-74 UniRef50_D1S145 DNA integration/recombination/invertion protein ... 272 1e-71 UniRef50_D2U4J7 Phage integrase n=5 Tax=Gammaproteobacteria RepI... 267 5e-70 UniRef50_C6USQ2 Integrase n=3 Tax=Escherichia coli O157:H7 RepID... 265 2e-69 UniRef50_Q2W5Z6 Integrase n=1 Tax=Magnetospirillum magneticum AM... 262 2e-68 UniRef50_C4SF49 Integrase n=1 Tax=Yersinia mollaretii ATCC 43969... 246 1e-63 UniRef50_B2TUZ8 Phage integrase n=4 Tax=Shigella RepID=B2TUZ8_SHIB3 207 7e-52 UniRef50_B8K7Z4 Integrase n=2 Tax=Vibrio RepID=B8K7Z4_VIBPA 205 2e-51 UniRef50_Q5R0D1 Integrase n=2 Tax=Alteromonadales RepID=Q5R0D1_I... 191 3e-47 UniRef50_A5W814 Phage integrase family protein n=4 Tax=Proteobac... 191 4e-47 UniRef50_A7JSJ8 Possible integrase/recombinase n=2 Tax=Mannheimi... 184 3e-45 UniRef50_C0DS64 Putative uncharacterized protein n=1 Tax=Eikenel... 184 5e-45 UniRef50_C0X0P7 Phage integrase family site specific recombinase... 177 7e-43 UniRef50_Q2W3R2 Integrase n=1 Tax=Magnetospirillum magneticum AM... 170 9e-41 UniRef50_C2I7M1 Integrase n=1 Tax=Vibrio cholerae TM 11079-80 Re... 157 6e-37 UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q... 154 5e-36 UniRef50_Q1LEK8 Phage integrase n=4 Tax=Burkholderiaceae RepID=Q... 149 1e-34 UniRef50_B2JXK0 Putative uncharacterized protein n=1 Tax=Burkhol... 148 3e-34 UniRef50_Q8DFY9 DNA-directed RNA polymerase, beta subunit/140 kD... 147 8e-34 UniRef50_B2UKS9 Integrase family protein n=1 Tax=Akkermansia muc... 146 2e-33 UniRef50_Q2SDK0 Integrase n=1 Tax=Hahella chejuensis KCTC 2396 R... 145 2e-33 UniRef50_UPI00016AE785 Phage integrase:Phage integrase, N-termin... 141 3e-32 UniRef50_A9C3M6 Integrase family protein n=1 Tax=Delftia acidovo... 141 3e-32 UniRef50_D2YQV3 Phage integrase family protein n=2 Tax=Vibrio Re... 134 4e-30 UniRef50_C3MAV8 DNA integration/recombination/invertion protein ... 124 5e-27 UniRef50_A8ZYY4 Integrase family protein n=1 Tax=Desulfococcus o... 121 3e-26 UniRef50_A4EPH1 Integrase n=2 Tax=Rhodobacteraceae RepID=A4EPH1_... 112 1e-23 UniRef50_B0VK72 Integrase n=1 Tax=Azospirillum phage Cd RepID=B0... 111 4e-23 UniRef50_C8Q741 Integrase n=1 Tax=Pantoea sp. At-9b RepID=C8Q741... 111 4e-23 UniRef50_UPI00016AAE5A phage integrase family protein n=2 Tax=Bu... 109 2e-22 UniRef50_Q48JR5 Putative uncharacterized protein n=4 Tax=Pseudom... 106 1e-21 UniRef50_C0AVY7 Putative uncharacterized protein n=1 Tax=Proteus... 100 8e-20 UniRef50_C7DB29 Phage integrase family protein n=1 Tax=Thalassio... 99 3e-19 Sequences not found previously or not previously below threshold: UniRef50_C0DYX2 Putative uncharacterized protein n=2 Tax=Eikenel... 149 1e-34 UniRef50_A3MZK6 Predicted phage integrase family protein n=5 Tax... 149 2e-34 UniRef50_Q4ZSI8 Phage integrase:Phage integrase, N-terminal SAM-... 146 1e-33 UniRef50_Q88G06 Phage integrase, putative n=12 Tax=Gammaproteoba... 143 1e-32 UniRef50_A6T076 Phage-related integrase n=2 Tax=Burkholderiales ... 142 2e-32 UniRef50_B7V6G8 Integrase n=5 Tax=root RepID=B7V6G8_PSEA8 134 5e-30 UniRef50_B9BDB4 Putative integrase n=1 Tax=Burkholderia multivor... 127 5e-28 UniRef50_A3QBL8 Phage integrase family protein n=1 Tax=Shewanell... 126 2e-27 UniRef50_Q2NTS7 Phage integrase n=25 Tax=Enterobacteriaceae RepI... 125 3e-27 UniRef50_A9ANN7 Integrase family protein n=30 Tax=Burkholderia R... 124 5e-27 UniRef50_B5YSQ6 Site-specific recombinase, phage integrase famil... 124 6e-27 UniRef50_C5A9R6 Phage integrase:Phage integrase, N-terminal SAM-... 121 5e-26 UniRef50_Q0HXZ0 Phage integrase family protein n=6 Tax=Gammaprot... 121 6e-26 UniRef50_Q9PD24 Phage-related protein n=2 Tax=Xylella fastidiosa... 120 7e-26 UniRef50_A6FSU1 Phage integrase n=1 Tax=Roseobacter sp. AzwK-3b ... 117 5e-25 UniRef50_B9TI67 Putative uncharacterized protein (Fragment) n=1 ... 115 3e-24 UniRef50_Q3A6E0 Site-specific recombinase/integrase n=3 Tax=Pelo... 114 5e-24 UniRef50_C5SIT1 Integrase family protein n=1 Tax=Asticcacaulis e... 114 6e-24 UniRef50_Q482E5 Site-specific recombinase, phage integrase famil... 111 4e-23 UniRef50_C5V3D2 Integrase family protein n=1 Tax=Gallionella fer... 111 6e-23 UniRef50_A1B6Q9 Phage integrase family protein n=1 Tax=Paracoccu... 109 2e-22 UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuro... 109 2e-22 UniRef50_B7X1U3 Putative uncharacterized protein n=1 Tax=Comamon... 109 2e-22 UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadec... 108 4e-22 UniRef50_C1SPM2 Site-specific recombinase XerD n=1 Tax=Denitrovi... 108 4e-22 UniRef50_A5CFJ0 Phage-related integrase n=19 Tax=Orientia tsutsu... 107 5e-22 UniRef50_D0CWC5 Phage integrase family protein n=1 Tax=Silicibac... 107 8e-22 UniRef50_A5KPC6 Putative uncharacterized protein n=3 Tax=Clostri... 106 1e-21 UniRef50_A3D8Y2 Phage integrase family protein n=4 Tax=Shewanell... 105 3e-21 UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5... 105 3e-21 UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium ML... 104 5e-21 UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfov... 103 1e-20 UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_... 103 1e-20 UniRef50_A3VAJ4 Site-specific recombinase, phage integrase famil... 102 1e-20 UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=... 102 2e-20 UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium ... 102 2e-20 UniRef50_Q3JTP5 Phage integrase family n=5 Tax=root RepID=Q3JTP5... 102 2e-20 UniRef50_D2LJU9 Integrase family protein n=1 Tax=Rhodomicrobium ... 102 2e-20 UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio s... 101 4e-20 UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodoba... 101 5e-20 UniRef50_Q5NZR5 Phage-related integrase n=1 Tax=Aromatoleum arom... 101 5e-20 UniRef50_Q129B4 Phage integrase n=1 Tax=Polaromonas sp. JS666 Re... 101 5e-20 UniRef50_Q5P749 Similar to phage-related integrase n=3 Tax=Bacte... 100 6e-20 UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodoba... 100 9e-20 UniRef50_C9RBE5 Integrase family protein n=1 Tax=Ammonifex degen... 100 1e-19 UniRef50_Q1NIG8 Phage integrase n=1 Tax=delta proteobacterium ML... 100 1e-19 UniRef50_Q5FN31 Phage related integrase n=1 Tax=Gluconobacter ox... 99 2e-19 UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR 99 2e-19 UniRef50_A1B9G7 Phage integrase family protein n=3 Tax=Rhodobact... 99 2e-19 UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JD... 99 2e-19 UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2... 99 3e-19 UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus t... 99 3e-19 UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter ve... 99 3e-19 UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium ... 98 4e-19 UniRef50_A5N1F6 Integrase-related protein n=3 Tax=Clostridia Rep... 98 5e-19 UniRef50_Q1K3L0 Phage integrase n=1 Tax=Desulfuromonas acetoxida... 98 5e-19 UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxida... 98 5e-19 UniRef50_C4XKJ5 Site-specific recombinase n=1 Tax=Desulfovibrio ... 98 6e-19 UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1... 98 6e-19 UniRef50_B8GSD9 Integrase family protein n=1 Tax=Thioalkalivibri... 98 7e-19 UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospir... 98 7e-19 UniRef50_UPI0001BC6CC7 phage-related integrase n=1 Tax=Vibrio pa... 97 9e-19 UniRef50_A6D7H3 Putative uncharacterized protein n=1 Tax=Vibrio ... 97 1e-18 UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsu... 97 1e-18 UniRef50_C9CXZ5 Phage integrase n=1 Tax=Silicibacter sp. TrichCH... 96 1e-18 UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio... 96 1e-18 UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 R... 96 2e-18 UniRef50_B8R670 Integrase n=4 Tax=root RepID=B8R670_9CAUD 96 2e-18 UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 96 2e-18 UniRef50_B9K2P6 Integrase n=1 Tax=Agrobacterium vitis S4 RepID=B... 96 2e-18 UniRef50_Q2W8W7 Integrase n=2 Tax=Magnetospirillum RepID=Q2W8W7_... 96 2e-18 UniRef50_B6G0S2 Putative uncharacterized protein n=1 Tax=Clostri... 96 2e-18 UniRef50_B9QS39 Site-specific recombinase, phage integrase famil... 95 3e-18 UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacte... 95 4e-18 UniRef50_D2LK83 Integrase family protein n=1 Tax=Rhodomicrobium ... 95 4e-18 UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacte... 95 4e-18 UniRef50_A3DCS0 Phage integrase n=6 Tax=Bacteria RepID=A3DCS0_CLOTH 95 4e-18 UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacteriu... 95 4e-18 UniRef50_B9MR26 Integrase family protein n=2 Tax=Anaerocellum th... 95 5e-18 UniRef50_A3PPX4 Phage integrase family protein n=7 Tax=Alphaprot... 95 5e-18 UniRef50_A5L0D7 Site-specific recombinase, phage integrase famil... 94 6e-18 UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=... 94 6e-18 UniRef50_A4TWM2 Phage integrase n=1 Tax=Magnetospirillum gryphis... 94 7e-18 UniRef50_Q2NBN0 Site-specific recombinase, phage integrase famil... 94 7e-18 UniRef50_A8MGP9 Integrase family protein n=1 Tax=Alkaliphilus or... 94 8e-18 UniRef50_A1K6M5 Site-specific recombinase, phage integrase famil... 94 9e-18 UniRef50_C6NU13 Site-specific recombinase, phage integrase famil... 94 9e-18 UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacteriu... 94 1e-17 UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicell... 94 1e-17 UniRef50_A4EGP6 Putative integrase n=1 Tax=Roseobacter sp. CCS2 ... 94 1e-17 UniRef50_D0WGY0 Putative phage integrase n=1 Tax=Slackia exigua ... 94 1e-17 UniRef50_Q0F389 Site-specific recombinase, phage integrase famil... 94 1e-17 UniRef50_C5SDM2 Integrase family protein n=1 Tax=Allochromatium ... 93 1e-17 UniRef50_Q984J9 Integrase n=1 Tax=Mesorhizobium loti RepID=Q984J... 93 2e-17 UniRef50_B1B8Q2 Phage integrase n=1 Tax=Clostridium botulinum C ... 93 2e-17 UniRef50_A3SHG9 Phage integrase n=1 Tax=Roseovarius nubinhibens ... 93 2e-17 UniRef50_Q8XZ52 Putative integrase/recombinase protein n=1 Tax=R... 93 2e-17 UniRef50_A3UKJ7 Phage integrase n=1 Tax=Oceanicaulis alexandrii ... 93 2e-17 UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacteriu... 93 2e-17 UniRef50_C4FP65 Putative uncharacterized protein n=1 Tax=Veillon... 93 2e-17 UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia am... 93 2e-17 UniRef50_A6X006 Phage integrase family protein n=2 Tax=Alphaprot... 93 2e-17 UniRef50_Q5LLE0 Site-specific recombinase, phage integrase famil... 93 3e-17 UniRef50_B9QSW9 Site-specific recombinase, phage integrase famil... 92 3e-17 UniRef50_Q2NDK6 Site-specific recombinase, phage integrase famil... 92 3e-17 UniRef50_B7IY65 DNA integration/recombination/invertion protein ... 92 3e-17 UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronos... 92 3e-17 UniRef50_C6ACZ4 Phage-related integrase/recombinase n=3 Tax=Bart... 92 3e-17 UniRef50_C8WA39 Integrase family protein n=1 Tax=Atopobium parvu... 92 3e-17 UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales... 92 3e-17 UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuro... 92 3e-17 UniRef50_A4SIA1 Phage integrase family protein n=2 Tax=Gammaprot... 92 3e-17 UniRef50_UPI0000E0E5BD Tyrosine recombinase xerC n=2 Tax=Proteob... 92 4e-17 UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogeni... 92 4e-17 UniRef50_C6BFQ2 Integrase family protein n=4 Tax=Betaproteobacte... 92 4e-17 UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculu... 91 4e-17 UniRef50_A3WDG1 Site-specific recombinase, phage integrase famil... 91 5e-17 UniRef50_A7XXG4 Phage XerD-like integrase n=2 Tax=unclassified S... 91 6e-17 UniRef50_UPI000169495E prophage LambdaBa04, site-specific recomb... 91 6e-17 UniRef50_B9MQ70 Integrase family protein n=1 Tax=Anaerocellum th... 91 7e-17 UniRef50_C4XJH7 Putative site-specific recombinase n=3 Tax=Desul... 91 7e-17 UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepI... 91 7e-17 UniRef50_A7IMK8 Integrase family protein n=39 Tax=Bacteria RepID... 91 7e-17 UniRef50_A5L0D6 Site-specific recombinase, phage integrase famil... 91 8e-17 UniRef50_Q72B79 Site-specific recombinase, phage integrase famil... 91 9e-17 UniRef50_A6QD27 Site-specific recombinase, phage integrase famil... 91 1e-16 UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Bu... 90 1e-16 UniRef50_C4V5B3 Prophage LambdaCh01, site-specific recombinase p... 90 1e-16 UniRef50_UPI00016AB8CE Phage integrase family protein n=1 Tax=Bu... 90 1e-16 UniRef50_D2BJR0 Site-specific recombinase, phage integrase famil... 90 1e-16 UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M... 90 1e-16 UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP... 90 1e-16 UniRef50_A8V435 Phage integrase family protein n=2 Tax=Hydrogeni... 90 2e-16 UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfo... 90 2e-16 UniRef50_Q7MPT5 Site-specific recombinase, phage integrase famil... 90 2e-16 UniRef50_B5S2W8 Integrase/recombinase protein n=1 Tax=Ralstonia ... 90 2e-16 UniRef50_A9IT43 Phage-related integrase/recombinase n=5 Tax=Bart... 89 2e-16 UniRef50_Q2STX2 Site-specific recombinase, phage integrase famil... 89 2e-16 UniRef50_C1XYN2 Site-specific recombinase XerD n=1 Tax=Meiotherm... 89 2e-16 UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacterac... 89 2e-16 UniRef50_A0QEY2 Phage-related integrase n=5 Tax=Actinomycetales ... 89 2e-16 UniRef50_C2RY84 Prophage LambdaBa04, site-specific recombinase, ... 89 3e-16 UniRef50_Q5SI41 Putative phage integrase/recombinase n=1 Tax=The... 89 3e-16 UniRef50_A4XLL4 Phage integrase family protein n=1 Tax=Caldicell... 89 3e-16 UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 88 4e-16 UniRef50_B9KYK7 Putative integrase n=1 Tax=Thermomicrobium roseu... 88 4e-16 UniRef50_UPI0001973B6A integrase family protein n=1 Tax=Clostrid... 88 4e-16 UniRef50_A3D8Y1 Phage integrase family protein n=4 Tax=Shewanell... 88 4e-16 UniRef50_C4XNH1 Site-specific recombinase n=2 Tax=Desulfovibrio ... 88 4e-16 UniRef50_B6WRU7 Putative uncharacterized protein n=1 Tax=Desulfo... 88 4e-16 UniRef50_B8IH05 Integrase family protein n=1 Tax=Methylobacteriu... 88 4e-16 UniRef50_A1B4R3 Phage integrase family protein n=4 Tax=Rhodobact... 88 5e-16 UniRef50_A3WYT9 Integrase /recombinase n=2 Tax=Bradyrhizobiaceae... 88 5e-16 UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodo... 88 5e-16 UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio ... 88 5e-16 UniRef50_A6SV87 Site-specific recombinase, phage integrase famil... 88 5e-16 UniRef50_C0XLK8 Phage integrase family site specific recombinase... 88 5e-16 UniRef50_C3R0L2 Integrase n=4 Tax=Bacteroidales RepID=C3R0L2_9BACE 88 6e-16 UniRef50_Q3Z840 Site-specific recombinase, phage integrase famil... 88 6e-16 UniRef50_C1SH90 Site-specific recombinase XerD n=2 Tax=Denitrovi... 88 6e-16 UniRef50_B2JD50 Integrase family protein n=2 Tax=Burkholderia Re... 88 6e-16 UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6... 88 7e-16 UniRef50_A9W5J9 Integrase family protein n=2 Tax=Alphaproteobact... 88 7e-16 UniRef50_C9KTZ2 Tyrosine type site-specific recombinase n=1 Tax=... 88 7e-16 UniRef50_A6P1V8 Putative uncharacterized protein n=2 Tax=Bactero... 88 7e-16 UniRef50_Q2NBN1 Site-specific recombinase, phage integrase famil... 87 8e-16 UniRef50_A2P3A8 Integrase n=3 Tax=Vibrionaceae RepID=A2P3A8_VIBCH 87 9e-16 UniRef50_Q1GLB1 Phage integrase n=1 Tax=Ruegeria sp. TM1040 RepI... 87 9e-16 UniRef50_A6NQW5 Putative uncharacterized protein n=1 Tax=Bactero... 87 9e-16 UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella Rep... 87 9e-16 UniRef50_Q30XD6 Site-specific recombinase XerD-like n=1 Tax=Desu... 87 1e-15 UniRef50_Q2IUV8 Phage integrase n=1 Tax=Rhodopseudomonas palustr... 87 1e-15 UniRef50_B2JC71 Integrase family protein n=17 Tax=Bacteria RepID... 87 1e-15 UniRef50_Q04676 Rci protein n=10 Tax=Enterobacteriaceae RepID=Q0... 87 1e-15 UniRef50_B1ZY20 Integrase family protein n=1 Tax=Opitutus terrae... 87 1e-15 UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Entero... 86 1e-15 UniRef50_B6R3I2 Site-specific recombinase, phage integrase famil... 86 1e-15 UniRef50_Q02VM2 Integrase n=13 Tax=Bacilli RepID=Q02VM2_LACLS 86 2e-15 UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophu... 86 2e-15 UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostri... 86 2e-15 UniRef50_Q2GAQ9 Phage integrase n=1 Tax=Novosphingobium aromatic... 86 2e-15 UniRef50_A9FYM3 Integrase n=1 Tax=Phaeobacter gallaeciensis BS10... 86 2e-15 UniRef50_D1CFY4 Integrase family protein n=1 Tax=Thermobaculum t... 86 2e-15 UniRef50_B0KSV1 Integrase family protein n=1 Tax=Pseudomonas put... 86 2e-15 UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio v... 86 2e-15 UniRef50_A4Y8Q0 Phage integrase family protein n=2 Tax=Shewanell... 86 2e-15 UniRef50_Q1GH05 Tyrosine recombinase xerD n=5 Tax=Rhodobacterace... 86 2e-15 UniRef50_Q28ND0 Phage integrase n=2 Tax=Rhodobacteraceae RepID=Q... 86 2e-15 UniRef50_B9JWL0 Phage-related integrase n=1 Tax=Agrobacterium vi... 86 2e-15 UniRef50_A1HTM7 Phage integrase family protein n=1 Tax=Thermosin... 86 2e-15 UniRef50_A1VGL4 Phage integrase family protein n=1 Tax=Desulfovi... 86 2e-15 UniRef50_D2SF19 LigA n=1 Tax=Geodermatophilus obscurus DSM 43160... 86 2e-15 >UniRef50_C9Y1M6 Prophage lambda integrase n=26 Tax=root RepID=C9Y1M6_CROTZ Length = 382 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 318/375 (84%), Positives = 356/375 (94%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPRKNNV VPNLYPLYSRKVNKVYWRYKHP+TGKFH+LGTNEAEAIAIATEAN+RLA Sbjct: 1 MAARPRKNNVKVPNLYPLYSRKVNKVYWRYKHPITGKFHSLGTNEAEAIAIATEANSRLA 60 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 EQ+TRQILA+SDRIATSKGKAITT TWL+RY IQ++RLKSGDIR NT+KQKAKPVSLLR Sbjct: 61 EQQTRQILALSDRIATSKGKAITTITWLERYWKIQEERLKSGDIRQNTFKQKAKPVSLLR 120 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 ER GMKLISAVDVRDIAQ+LD+YIAAG+PRMAQV+RSVLID+FKEAQH+GEVPPGYNPAL Sbjct: 121 ERVGMKLISAVDVRDIAQILDDYIAAGQPRMAQVIRSVLIDIFKEAQHFGEVPPGYNPAL 180 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 ATKQPRR+I RQRLSLEEW+KIFDIADATHRYMGNAMLLALVTGQRLGDIS MKF+DIWD Sbjct: 181 ATKQPRRRINRQRLSLEEWQKIFDIADATHRYMGNAMLLALVTGQRLGDISNMKFADIWD 240 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 DHLHV+QEKTGSK+AIPLSLRL+AI W+LRDV+ARCRDYAVS +L+HFFR+TS AERGAQ Sbjct: 241 DHLHVVQEKTGSKLAIPLSLRLDAIGWNLRDVIARCRDYAVSPFLIHFFRATSMAERGAQ 300 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTD 360 VK+NT+TMNFSKARD A I WG+G+PATFHEQRSL+ERLY +QG+DTQ+LLGHK+ QQT Sbjct: 301 VKSNTITMNFSKARDKAEIHWGDGTPATFHEQRSLAERLYGDQGVDTQRLLGHKSPQQTA 360 Query: 361 RYHDDRGKGWSKVAL 375 RYHD+RGK W+ +AL Sbjct: 361 RYHDNRGKDWNYIAL 375 >UniRef50_P27077 Integrase n=36 Tax=root RepID=VINT_BPP21 Length = 380 Score = 462 bits (1189), Expect = e-129, Method: Composition-based stats. Identities = 224/377 (59%), Positives = 289/377 (76%), Gaps = 2/377 (0%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPR + +S+PNLY ++ KVYW+YKHP++G+FH+LGT+E EA +ATEANT +A Sbjct: 1 MAARPRSHKISIPNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIA 60 Query: 61 EQRTRQILAISDRIATSKGK--AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 EQRTRQIL++++R+ KG+ IT + WLD+Y +IQ+DRL+ ++R N+Y+QK KP+ L Sbjct: 61 EQRTRQILSVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRL 120 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 RE GM+ + + DIA+++D A G RMAQVVR VLIDVFKEAQH G VPPG+NP Sbjct: 121 FREHCGMQHLKDITALDIAEIIDAVKAEGHNRMAQVVRMVLIDVFKEAQHAGHVPPGFNP 180 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 A ATKQPR ++ RQRLSL EW+ IF+ Y+ MLLALVTGQRLGDI +KFSDI Sbjct: 181 AQATKQPRNRVNRQRLSLLEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDI 240 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 WDD LH+ QEKTGSK+AIPL+L+ +A+N +LR+V+++CRD VS YLVH+ +TSQA RG Sbjct: 241 WDDMLHITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRG 300 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQ 358 QV ANTLT F KA++ I W +G+ TFHEQRSLSERLY+EQGLDTQKLLGHK+++ Sbjct: 301 DQVSANTLTTAFKKAKEKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKM 360 Query: 359 TDRYHDDRGKGWSKVAL 375 TDRY+DDRGK W V + Sbjct: 361 TDRYNDDRGKDWIIVDI 377 >UniRef50_B2U001 Site-specific recombinase, phage integrase family n=32 Tax=Enterobacteriaceae RepID=B2U001_SHIB3 Length = 376 Score = 439 bits (1130), Expect = e-122, Method: Composition-based stats. Identities = 186/375 (49%), Positives = 265/375 (70%), Gaps = 2/375 (0%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTRLAE 61 ARPRK VP L P + ++ NKVYWRY+HP+TGK H LG ++ A IA EAN+RLA Sbjct: 2 ARPRKYKTDVPGLSPYFDKRNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLAR 61 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 Q+ Q+L++ ++I + G + T + +L+ Y+ IQ +R ++G+I+LNT KQKA P+ + E Sbjct: 62 QQMEQMLSLQEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDE 121 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 R G + + A+ V+D+ +L+EY A G RM Q+ R VLIDVF+EAQ G+VPPG+NPA + Sbjct: 122 RFGTRRLDAITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAES 181 Query: 182 TKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 K+P+ +I+RQRL+ +EW I++ A+ ++ MLLAL+TGQRL DI +M+FSDI D Sbjct: 182 AKKPQVRISRQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDG 241 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 +LHV Q+KTG++IAIPL+LR + +N +L DVV+ CRD +S +L+H + A+RG V Sbjct: 242 YLHVEQQKTGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAKRGGMV 301 Query: 302 KANTLTMNFSKARDLARIDW-GEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTD 360 K TLT+ F KARD +W G+P +FHEQRSLSERL++EQG+DT+ LLGH Q+ TD Sbjct: 302 KPATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKILLGHSNQKMTD 361 Query: 361 RYHDDRGKGWSKVAL 375 Y+D RGK W K+ + Sbjct: 362 IYNDARGKEWKKLVI 376 >UniRef50_B5XR66 Site-specific recombinase, phage integrase family n=1 Tax=Klebsiella pneumoniae 342 RepID=B5XR66_KLEP3 Length = 379 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 181/379 (47%), Positives = 251/379 (66%), Gaps = 4/379 (1%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPR + V++PNLY ++ +K YW+Y+HP+TG+F GT++ A ATE N LA Sbjct: 1 MAARPRDHKVNIPNLYCKLDKRNSKTYWQYRHPLTGQFIGFGTDQDAASQAATELNRLLA 60 Query: 61 EQRTRQILAISDRIATSK---GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 +Q T Q A+ D + K K+I W+DRY IQ +RL +I+LNT K + V Sbjct: 61 QQETAQSFALIDMVNHKKVNSKKSIRMRVWIDRYLKIQVERLSDNEIKLNTLKSRKTCVG 120 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 +L +R I V + +A + DEY A G+ RMAQ +RSV ID+F+EAQH GEV PGYN Sbjct: 121 VLAQRLPDVGIQEVTTKMLAAITDEYKAKGKARMAQTLRSVWIDLFREAQHAGEVEPGYN 180 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 PALAT++ ++ R RL+ E W+ IF+ A Y+ N+MLLA+VTGQR GD+++MKFSD Sbjct: 181 PALATRKVVARVNRSRLNFEMWQAIFEAASDMAPYVQNSMLLAIVTGQRRGDLAKMKFSD 240 Query: 238 IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 +WD +LHV Q KTG K+AIPLSLR ++ SL V+ RCRD VS +L+H S+ + + Sbjct: 241 VWDGYLHVKQLKTGVKLAIPLSLRSEVLDISLAQVIKRCRDRIVSPWLLHHVTSSGKVKA 300 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEG-SPATFHEQRSLSERLYKEQGLDTQKLLGHKTQ 356 G QV N+L+++F A D + G + TFHEQRSLSERLY+ QG++TQ+LLGH ++ Sbjct: 301 GDQVGENSLSVSFKLAVDSTNLSIERGKTMPTFHEQRSLSERLYEAQGINTQQLLGHSSE 360 Query: 357 QQTDRYHDDRGKGWSKVAL 375 + T +YH+DRG W KV + Sbjct: 361 KMTAQYHNDRGLDWVKVKV 379 >UniRef50_C8Q8H3 Lambda integrase n=1 Tax=Pantoea sp. At-9b RepID=C8Q8H3_9ENTR Length = 380 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 176/380 (46%), Positives = 258/380 (67%), Gaps = 5/380 (1%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPR++NV++PNLY ++ +KVYW+Y+HPVT +F GT+E A A EAN ++ Sbjct: 1 MAARPRRHNVTIPNLYCKLDKRTSKVYWQYRHPVTNQFIGFGTDEDAAKEAAIEANRIIS 60 Query: 61 EQRTRQILAISDRIATSKGKAIT---TSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 +Q+T+QI + D + K T +W++ Y+ I ++R++SG+I +T K K Sbjct: 61 QQQTKQITILVDMALKKEAKLTTGMRLFSWIEIYEKICNERIESGEIAKSTGKALVKSAK 120 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 +L +R + +D + +A ++DEY + G+ RMAQ +R+ ID+FKEAQH GEV GYN Sbjct: 121 ILEKRLPNVRLRNIDTKALASIIDEYKSEGKNRMAQFLRANWIDMFKEAQHSGEVDQGYN 180 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFS 236 PALAT++ K+ R RLS +EW+KI++ A + N+MLLAL+TGQR DI++MKFS Sbjct: 181 PALATRKVHAKVKRARLSFDEWQKIYEAAKNTLAPAASNSMLLALITGQRRTDIAKMKFS 240 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 D+WDDHLH+ Q KTG+KIA+PLSLR NA+ SL + +A CRD +S Y++H R+ + Sbjct: 241 DVWDDHLHIEQSKTGAKIALPLSLRCNALGMSLGEAIAICRDRVLSPYMIHHVRNNRGKK 300 Query: 297 RGAQVKANTLTMNFSKARDLARIDWG-EGSPATFHEQRSLSERLYKEQGLDTQKLLGHKT 355 G + ++L+ FS+AR A ++ + +P +FHEQRSLSERLY+ QG++TQ LLGHK+ Sbjct: 301 PGDPIWEDSLSRYFSEARISAGVNPDKDQTPPSFHEQRSLSERLYRAQGINTQLLLGHKS 360 Query: 356 QQQTDRYHDDRGKGWSKVAL 375 TD+Y+DDRG W K+AL Sbjct: 361 IAMTDKYNDDRGADWKKLAL 380 >UniRef50_B5YWJ6 Phage integrase family protein n=25 Tax=Enterobacteriaceae RepID=B5YWJ6_ECO5E Length = 372 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 172/377 (45%), Positives = 252/377 (66%), Gaps = 7/377 (1%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M+ RPRKN+ V LY + R+ +VY++YK+PVTGKFH LGT++ +A IA+ AN R+A Sbjct: 1 MSPRPRKNSTDVAGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIA 60 Query: 61 EQRTRQILA-ISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + I + + +K + I W+DRY IQD RLK+GDI T+K+K + + L Sbjct: 61 AAEAEYFMRKIDESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYL 120 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 R G + ++VRD A +LDE++ A+V R + +D++KEAQH GEVPPG+NP Sbjct: 121 VSRLGNHPLKELEVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPP 180 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 AT++P K+TR RL++E+W+KI++ ++ NAMLLA+VTGQR DI M+FSD+W Sbjct: 181 EATRKPIPKVTRARLTMEDWQKIYNATPEK-HFIRNAMLLAIVTGQRRDDICHMRFSDVW 239 Query: 240 DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 ++HLH+ Q KTG ++A+PL+LR +AI +L++V+ CRD +S YL+H + ++ Sbjct: 240 NEHLHITQGKTGMRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIH----SRHQKQPK 295 Query: 300 QVKANTLTMNFSKARDLARIDWGEG-SPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQ 358 + + L+ F+KARDLA + G +P TFHEQRSLSERLY+ QG+DT+ LLGHK Q Sbjct: 296 PMSKDNLSDYFAKARDLAGVIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTLLGHKVQAT 355 Query: 359 TDRYHDDRGKGWSKVAL 375 TDRY+D RG+ W K+ + Sbjct: 356 TDRYNDTRGQEWVKLVI 372 >UniRef50_A6WME5 Phage integrase family protein n=1 Tax=Shewanella baltica OS185 RepID=A6WME5_SHEB8 Length = 394 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 154/399 (38%), Positives = 216/399 (54%), Gaps = 29/399 (7%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPRK ++ V NLY + +VY++Y+ P G F LG + A A+ N +A Sbjct: 1 MAARPRKFDLGVENLYCRQDARNGEVYYQYRDPRNGAFRGLGKDRTIAKERASALNLLIA 60 Query: 61 EQRTRQIL-AISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 +Q + + R I W+++Y AIQ DRL +G+IRLNT+K + ++ Sbjct: 61 QQLASAFIDNYNARPERVAQHGIAFKKWVEKYIAIQGDRLNNGEIRLNTFKTRKSQATIA 120 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + G + + +D +L+ A G+ R AQ VRSVLID+FKEA GE+ G+NPA Sbjct: 121 IKAMGNIPLKDISTKDCYELMQSLRAQGKERTAQAVRSVLIDIFKEAAQAGEITGGFNPA 180 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF---- 235 ATK PR + R RL LE K+I +A+ ++ N +LLALVTGQR DI+ M+F Sbjct: 181 SATKSPRVNVVRDRLELEAVKQILAVAETKEPWVKNTILLALVTGQRRVDIANMQFKKGN 240 Query: 236 -------------------SDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 S + + LHV Q+KT + + +PL L+L A++ S+ +VV C Sbjct: 241 DWEKLYQNWKTGNRSKPPYSYVEGEWLHVFQQKTSTMLKLPLGLKLEALDLSIGNVVLSC 300 Query: 277 RDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLS 336 R VS YL+H A G QV +T+T FS+ RD TFHE RSLS Sbjct: 301 RSRCVSKYLIHHQHGIRGATIGGQVFVDTITKRFSECRDELGPST-----TTFHELRSLS 355 Query: 337 ERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 ERLY QG+DTQ LLGHK + T YHD RG+ W ++ + Sbjct: 356 ERLYSGQGIDTQILLGHKDPRTTAAYHDIRGQMWIELVI 394 >UniRef50_P16407 Integrase n=20 Tax=root RepID=VINT_BPHK0 Length = 357 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 138/374 (36%), Positives = 213/374 (56%), Gaps = 25/374 (6%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 R + PNLY N Y+ Y+ P TGK LG + AI A +AN L Sbjct: 5 RSHERRDLPPNLYIR-----NNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGN 59 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 R+ ++ DRI + AIT WLDRY+ I +R IR T A + +R + Sbjct: 60 RRE--SLIDRIKGAD--AITLHAWLDRYETILSER----GIRPKTLLDYASKIRAIRRKL 111 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 K ++ + +++A +L+ Y+A G+ A+++RS L+DVF+EA G V NP AT+ Sbjct: 112 PDKPLADISTKEVAAMLNTYVAEGKSASAKLIRSTLVDVFREAIAEGHV--ATNPVTATR 169 Query: 184 QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 + ++ R RL+ E+ I+ A+ ++ AM LA+VTGQR+GD+ RMK+SDI D+HL Sbjct: 170 TAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHL 229 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 H+ Q KTG+K+AIPL+L ++A+N SL D + +CR+ + S ++ ++ + Sbjct: 230 HIEQSKTGAKLAIPLTLTIDALNISLADTLQQCREASSSETII-------ASKHHDPLSP 282 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTDR 361 T++ F+KAR+ + + + +G+P TFHE RSLS RLY+ Q D Q+LLGHK+ R Sbjct: 283 KTVSKYFTKARNASGLSF-DGNPPTFHELRSLSARLYRNQIGDKFAQRLLGHKSDSMAAR 341 Query: 362 YHDDRGKGWSKVAL 375 Y D RG+ W K+ + Sbjct: 342 YRDSRGREWDKIEI 355 >UniRef50_P27078 Integrase n=23 Tax=root RepID=VINT_BP434 Length = 356 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 126/374 (33%), Positives = 201/374 (53%), Gaps = 25/374 (6%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 R + PNLY N Y+ Y+ P TGK LG + AI A +AN L Sbjct: 5 RSHERRDLPPNLYIR-----NNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGH 59 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 + ++ RI + ++T +WLDRY+ I L S I+ T + +R Sbjct: 60 KHKP--LTARINSDN--SVTLHSWLDRYEKI----LASRGIKQKTLINYMSKIKAIRRGL 111 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 + + ++IA +L YI G+ A+++RS L D F+EA G + NP AT+ Sbjct: 112 PDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITT--NPVAATR 169 Query: 184 QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 + ++ R RL+ +E+ KI+ A+++ ++ AM LA+VTGQR+GD+ MK+SDI D +L Sbjct: 170 AAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYL 229 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 +V Q KTG KIAIP +L ++A+ S+++ + +C++ ++ + R + + Sbjct: 230 YVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETII-------ASTRREPLSS 282 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTDR 361 T++ F +AR + + + EG P TFHE RSLS RLY++Q D Q LLGHK+ + Sbjct: 283 GTVSRYFMRARKASGLSF-EGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQ 341 Query: 362 YHDDRGKGWSKVAL 375 Y DDRG+ W K+ + Sbjct: 342 YRDDRGREWDKIEI 355 >UniRef50_Q88MN9 Phage integrase, putative n=7 Tax=Pseudomonas RepID=Q88MN9_PSEPK Length = 368 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 18/380 (4%) Query: 1 MAARPRKN--NVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTR 58 MA RPR PNLY ++ Y+ Y+ PV+ + LG+++A+AIA A AN Sbjct: 1 MAPRPRNPGSKDLPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMA 60 Query: 59 LAEQRTRQILAISDRIATSKGKAIT-TSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 L +S RIA S W+ Y A LK ++ ++ + ++ Sbjct: 61 LQV----APPTLSARIAPEPSAPDRKFSEWIVEYFAD----LKDRELSESSMRNLRMRLN 112 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + + G + I + DIA L Y+ G+ +MA+ +RS+L D+F A G V YN Sbjct: 113 RVEKAFGERGIRTLTTMDIADYLSTYVKEGKAQMARAMRSLLRDLFMGAMARGWV--DYN 170 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 P ATK R KI RQRL+LE WK I++ +A ++ AM LAL+TGQR DI+ F D Sbjct: 171 PVEATKAARVKIKRQRLTLELWKAIYE--EAAQPWLKRAMELALITGQRREDIASFVFRD 228 Query: 238 IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 D L V+Q KTG+++ I S+ L I+ SL +V+ RCRD +S +LVH R+ S+A+ Sbjct: 229 EVDGFLQVVQSKTGARLRISTSVTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKA 288 Query: 298 GAQVKANTLTMNFSKARDLARIDWG---EGSPATFHEQRSLSERLYKEQGLDTQKLLGHK 354 G+ + +T++ F+ ARD A + G SP TFHEQRSL+ RL+ E+G D Q+LLGH+ Sbjct: 289 GSPIMLDTISKEFAAARDRAAVKLGLDLGASPPTFHEQRSLAARLHDEEGRDAQRLLGHR 348 Query: 355 TQQQTDRYHDDRGKGWSKVA 374 + + TD Y D RG W VA Sbjct: 349 SAKMTDLYRDSRGAEWIDVA 368 >UniRef50_B2Q6E8 Putative uncharacterized protein n=2 Tax=Providencia RepID=B2Q6E8_PROST Length = 354 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 125/375 (33%), Positives = 202/375 (53%), Gaps = 28/375 (7%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 R KN PNLY K Y+ Y++P TG + +G N+AEA+ A AN + ++ Sbjct: 5 RSPKNAHLPPNLYC------RKGYYSYRNPETGIEYGIGRNKAEAVNEAISANLFIYGKK 58 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 ++ +R+A++ AI W+DR+ I R D++ T + ++ Sbjct: 59 E----SLINRMASND--AIKFHDWIDRFGEIILLR----DLKKKTLDDYQGRLKRIKNSF 108 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 +S + +DIA ++ ++ G A+++RS+L D+F EA G V +NP +AT+ Sbjct: 109 NNVPLSEIKTKDIADYINNIVSDGNITTARLMRSILKDMFNEAMSDGVV--DFNPVIATR 166 Query: 184 QPRRKITRQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 PR KI R R+S ++ +I++ A + ++ +M LA++TGQR GDI ++K+ D+ D Sbjct: 167 VPRNKIARTRMSESDYIQIYNTAVEHCQPWVSMSMDLAILTGQRSGDIRKLKWDDVHDGF 226 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 L + QEKTG+KIAIPL++ N N +L+ V+ RC+ V +++G + Sbjct: 227 LWIEQEKTGTKIAIPLTISNNIANKTLQSVLDRCKHELNGKEFVLV------SQKGDMLA 280 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTD 360 T+ FS AR + + W EGSP TFHE RSL+ R+Y + + +LLGHK+ T Sbjct: 281 DKTIGKAFSLARSKSGLSW-EGSPPTFHEIRSLASRVYGNEKSNEFANQLLGHKSMDMTR 339 Query: 361 RYHDDRGKGWSKVAL 375 Y DDRG W K+ + Sbjct: 340 MYQDDRGLSWKKIEI 354 >UniRef50_C4TU56 Phage integrase n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TU56_YERKR Length = 360 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 132/377 (35%), Positives = 216/377 (57%), Gaps = 21/377 (5%) Query: 1 MAARPRKNNVSVP-NLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTR 58 M RP K + ++P NL SRK + +++P+ GK ALG + +AIA A EAN Sbjct: 1 MKKRPAKYDANLPRNLTYRKSRKS----FYWRNPLNGKEIALGQISRRDAIAQAIEANHY 56 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 + ++ +A+ +++ T WL+RY+ I L+ + NTYK +A ++ Sbjct: 57 I--EKNYSPIALLEQLKGV--HEYTMDNWLERYEII----LQRRKLAANTYKVRAGHINT 108 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 +R++ K++S + DIA+ L+ ++ G+ MA +RSVL DVF+EA G + NP Sbjct: 109 IRDKFADKVLSKITTLDIAEFLESWVEQGKAAMAGTLRSVLSDVFREAIVAGRIE--VNP 166 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 T+ P+ + R+RL E++ I + A+ + +M LALVTGQR D+ +MKF D+ Sbjct: 167 VTPTRAPKITVMRERLEYEQYIAIRNAAEQQPAWFALSMDLALVTGQRREDVVKMKFIDV 226 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 D+ L++ Q KTG+ IAIPL+L L ++ SL +++ RCR + + +L+ + Sbjct: 227 RDNRLYIEQTKTGAMIAIPLTLTLKSVGLSLSNIIDRCRQVSRTDFLIS--SGIRKNSPD 284 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ-GLD-TQKLLGHKTQ 356 + + LT F KAR + + + SP +FHE RSLS RLY+++ G + T+KLLGHK++ Sbjct: 285 GSIHPDGLTKGFVKARRYSGLSFSH-SPPSFHEIRSLSGRLYEKEYGKEFTRKLLGHKSE 343 Query: 357 QQTDRYHDDRGKGWSKV 373 + TD+Y D RGK + + Sbjct: 344 KMTDKYLDTRGKEYVML 360 >UniRef50_B4SVC2 Phage integrase n=42 Tax=Enterobacteriaceae RepID=B4SVC2_SALNS Length = 359 Score = 352 bits (902), Expect = 1e-95, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 201/365 (55%), Gaps = 19/365 (5%) Query: 6 RKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTRLAEQRT 64 +K + ++P Y Y + +W ++PVT K LG +AI A EAN +A+ T Sbjct: 4 KKYDANLPR-YLTYRKASKSFFW--RNPVTDKEFPLGQIARRDAITQAIEANNFIAQNHT 60 Query: 65 RQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAG 124 +A+ +++ + + T S W+DRY+ + L+ + +NTYK ++ ++ +RE+ G Sbjct: 61 --PVALIEKLKGTD--SFTVSAWIDRYEVL----LQRRSLSVNTYKIRSNQLATVREKMG 112 Query: 125 MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 +++ V R IA+ L+ +I G+ MA +RSVL D+F+EA G + NP AT+ Sbjct: 113 EIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVK--NPVEATRI 170 Query: 185 PRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLH 244 P K+ R+RL LE + A+ + AM LALVTGQR DI MKFSD++D+ L+ Sbjct: 171 PEIKVARERLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLY 230 Query: 245 VIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKAN 304 V Q KTG KIAIPLSL L A L V+ RCR + + +++ + + + Sbjct: 231 VTQIKTGMKIAIPLSLTLEAPGLRLGTVIDRCRLVSRTDFMIS--AGIRKNSPTGNIHPD 288 Query: 305 TLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTDRY 362 LT F KAR + +++ +P TFHE RSL+ RLYK + + QKLLGH + T Y Sbjct: 289 GLTKTFVKARKASGVNFS-NNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSANTTKLY 347 Query: 363 HDDRG 367 D+R Sbjct: 348 LDERD 352 >UniRef50_Q2NUH1 Phage integrase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NUH1_SODGM Length = 355 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 135/373 (36%), Positives = 204/373 (54%), Gaps = 24/373 (6%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 R KN PNL P +N Y+ Y+ P TGK + LG N EAI A AN + Sbjct: 5 RSHKNRDLPPNLQP-----INGGYFCYRDPRTGKEYGLGRNRREAITQAIAANMAIYGSS 59 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 + L DRI+ ++ A T S W RY I + R ++ T + K + + E Sbjct: 60 KQSPLV--DRISGTQ--ATTVSEWTTRYLTILEGR----KLKPKTMTEHRKYLKAINEHL 111 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 G I V +D+A L+ ++ AG+ MA +R +ID+F+EA G V +NPA AT+ Sbjct: 112 GEFAIQQVQTKDVAAFLNLWVKAGKETMANKLRKEVIDLFREAIADGIV--SHNPAEATR 169 Query: 184 QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 R +I R+R++LEEWK I IA+ ++G+ + LALVTGQRLGDI + + + D L Sbjct: 170 NQRVEIQRERITLEEWKVIRKIAEKLPAWVGSCLDLALVTGQRLGDIQALLWENFKDGRL 229 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 ++ Q KTG +A R++ +N L DV+++ + A+++ H + Q A Sbjct: 230 YIKQAKTGMMLAFSAVTRIDCLNLCLADVLSQFK--ALNSTGSHIVA----DSKHEQFAA 283 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ-GLD-TQKLLGHKTQQQTDR 361 T++ F KAR ++ + W +G P +FHE RSL+ RLY ++ G D QKLLGHK+ + TD+ Sbjct: 284 KTISAAFLKARRVSGLTW-QGDPPSFHEIRSLAARLYTDEKGRDYAQKLLGHKSSEMTDK 342 Query: 362 YHDDRGKGWSKVA 374 Y D RG W+++ Sbjct: 343 YRDVRGSEWAEIE 355 >UniRef50_Q2W5Y0 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y0_MAGSA Length = 370 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 10/373 (2%) Query: 5 PRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRT 64 P K +P R Y+ + +P G+ + LG ++ A A A EAN ++ Sbjct: 2 PGKRRNMSRRDWPANLRCRRDGYYSWVNPTDGREYGLGRDKRAAFAQAVEANLQIMALCD 61 Query: 65 RQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAG 124 + L DR+ + T + Y+ D RL+ I T + ++ + R G Sbjct: 62 KPRLV--DRLNGT--TDTTFADLAALYRQEIDKRLERAKIVKATAMSMRQRLATIETRWG 117 Query: 125 MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 ++ + +D A +L EY AG+ RMAQ +RS ++DVF A G NP TK Sbjct: 118 ATKVAQITTKDAADMLREYEDAGKERMAQSMRSFMLDVFNHAVAIGWRET--NPVAVTKA 175 Query: 185 PRRKITRQRLSLEEWKKIFD-IADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 ++ R RL+LE+++ I A + AM LAL+TGQR D+ M DI D +L Sbjct: 176 VTVEVERSRLTLEDFRAIHAYAAANMAPRVARAMELALITGQRRDDLRNMGPKDISDGYL 235 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 V+Q K G++++IP+ +RL +NWSL +VVA CRD +S + +H +A G ++A Sbjct: 236 WVVQSKGGARVSIPVGIRLQVVNWSLSEVVANCRDAVLSKHFLHHNAIVGKARPGDPIRA 295 Query: 304 NTLTMNFSKARDLARIDWGEG-SPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTD 360 T+++ F++ARD A I G +P TFHE RSL+ RL+ ++ + + LLGHK+ + Sbjct: 296 QTISLEFAEARDKAGITGSTGKTPPTFHEIRSLAARLWTDERGEAFAKALLGHKSAEMAA 355 Query: 361 RYHDDRGKGWSKV 373 Y D RG W +V Sbjct: 356 LYRDKRGDDWVRV 368 >UniRef50_D2TZP7 Phage integrase n=3 Tax=Arsenophonus nasoniae RepID=D2TZP7_9ENTR Length = 336 Score = 337 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 196/364 (53%), Gaps = 31/364 (8%) Query: 12 VPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAIS 71 PNLY Y+ Y+ P T K + LG N+A AI A AN L T ++ ++ Sbjct: 2 PPNLY------KRNGYYSYRDPRTRKEYGLGRNKAYAINEAISANQLLLN--TEKVKPLT 53 Query: 72 DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAV 131 +RI ++ +LDRY+ I LK+ +R T K + + ++R+ I + Sbjct: 54 ERI--DGQGSVYFHEFLDRYEEI----LKTRGLREKTLKDYKQRIGVIRKGFVNAPIQNI 107 Query: 132 DVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 ++IA L I R A+++RS+L D F+EA G + NP +TK P+ KI R Sbjct: 108 TTKEIADFLQLSINEERITTAKLMRSLLNDCFREAISLGLIQ--INPVTSTKTPKIKIQR 165 Query: 192 QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTG 251 RLSLE++ I + + H ++ +AM LALVTGQR+ D+S++K+ DI D L +IQ+KTG Sbjct: 166 ARLSLEDFNTILGLINNGHHWLTHAMKLALVTGQRVSDVSKIKYKDIHDGKLWIIQQKTG 225 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 SKIAIPL + L I L +A C + S ++++ G ++ ++ F Sbjct: 226 SKIAIPLDIELYGIK--LSKTIADCVNN--SEFVIN--------NNGNKITVERISKEFR 273 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKEQ--GLDTQKLLGHKTQQQTDRYHDDRGKG 369 + RD+++++W G P +FHE RSLS RLY E QKLLGHK+ T +Y DDR Sbjct: 274 RFRDISQLNW-VGEPPSFHEIRSLSARLYTETMGSNFAQKLLGHKSATMTAKYQDDRNNS 332 Query: 370 WSKV 373 W ++ Sbjct: 333 WIEI 336 >UniRef50_Q31HX1 Phage integrase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HX1_THICR Length = 372 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 123/383 (32%), Positives = 203/383 (53%), Gaps = 25/383 (6%) Query: 1 MAARPRKNN-VSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 M+ + R+ + PNLY ++ KVY++YK P+ GKF++ GT++ +A+ A N + Sbjct: 1 MSPKAREISLGLPPNLYAKKDKRNGKVYYQYKSPLDGKFYSFGTDKNQAVNDAVALNHNI 60 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + + + K K + D + I D + ++ NT K + Sbjct: 61 YDAIQKSRV--------EKLKKPACILFRDFW-QIYFDSMNDRKLKPNTIKTRKSQYEAC 111 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 G ++ V V+D+A +++ YI + R A +RS L D FKEA H G V NPA Sbjct: 112 YPFIGNTPLNEVRVKDVADIINHYIEQDKRRTASAIRSTLKDAFKEAIHQGIVED--NPA 169 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 T+ P + RQR +L++ K+ +I ++ NA+LLAL+TGQR+ DI++MKF D Sbjct: 170 EKTRAPSVPVKRQRFNLDQVLKVLEI--NKETWLENAILLALITGQRVSDIAKMKFKDFD 227 Query: 240 DDHLHVIQEKT-----GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 ++L+VIQ+K + ++L+A++ +L D++ +CRD +S +LVH ++ Sbjct: 228 GEYLYVIQKKNRQGAPEKRYKYHKDIKLDALSMTLGDIINKCRDNVISKHLVHHTKNEGL 287 Query: 295 AERGAQVKANTLTMNFS-KARDLARIDWGEGSPATFHEQRSLSERLYKEQG-LDTQKLLG 352 A++G T++ F+ R++ + TFHE RSLS RLYK QG + QK+LG Sbjct: 288 AKKGTSCHEQTISKRFTWLVREVVD----GQNLPTFHELRSLSARLYKAQGNISEQKVLG 343 Query: 353 HKTQQQTDRYHDDRGKGWSKVAL 375 HK+ + T+ Y D RG W V + Sbjct: 344 HKSAKSTEIYTDARGSEWVAVEM 366 >UniRef50_C4I537 Bacteriophage lambda integrase, N-domain family n=2 Tax=pseudomallei group RepID=C4I537_BURPS Length = 375 Score = 323 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 117/372 (31%), Positives = 190/372 (51%), Gaps = 22/372 (5%) Query: 12 VPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAIS 71 NLY + + Y+ YK+ TGK + LG + A A A AN L + +++ Sbjct: 14 PANLY-----QNSAGYFWYKNTATGKSYGLGRDFKVASAQARTANAELLHRAGD--VSLI 66 Query: 72 DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE-RAGMKLISA 130 +RI G +T W D+Y + K+G NT K + ++ + + Sbjct: 67 NRI---DGGKLTLDQWCDKYLQKFEASGKAG----NTIKSVQSQIRAIKAAPFSTQSLMR 119 Query: 131 VDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT 190 V ++I ++ + + +RS L DVF+ A+ G + G NPA+ K P ++ Sbjct: 120 VSTKEINDYIEGITESRGATITAKIRSRLQDVFRSAEAAGHIELGKNPAIPVKAPPVDVS 179 Query: 191 RQRLSLEEWKKIFDIA--DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQE 248 R RL+L+++ I D+T + NA LAL+TGQRL DI+ M F + D L V Sbjct: 180 RDRLTLDDFNAIVARTREDSTRCWAANAFELALLTGQRLSDIAAMTFDQVKDGFLWVEPI 239 Query: 249 KTG--SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTL 306 K+ K+ IP+ + L+++ ++ V+ RCRD VS ++VHF + G +V +T+ Sbjct: 240 KSQGKVKLKIPVHVGLSSVKLTIEAVIKRCRDSVVSKHMVHFIHQRGSVKPGQKVYHDTI 299 Query: 307 TMNFSKARDLARIDWGEG-SPATFHEQRSLSERLYKEQ--GLDTQKLLGHKTQQQTDRYH 363 + F++ RD+A I EG +P +FHE RSL+ RLY ++ Q L+GH + Q T Y Sbjct: 300 SKTFAEMRDVAGITGREGRNPPSFHEIRSLAIRLYSDEYGPAFAQALVGHTSAQMTALYR 359 Query: 364 DDRGKGWSKVAL 375 D+RG+ W++V L Sbjct: 360 DNRGREWTEVKL 371 >UniRef50_C5BBQ8 Integrase n=3 Tax=Edwardsiella RepID=C5BBQ8_EDWI9 Length = 364 Score = 317 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 116/373 (31%), Positives = 183/373 (49%), Gaps = 33/373 (8%) Query: 11 SVPNLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTRLAEQRTRQILA 69 NLY ++ +++P++G+ LG + EA+ A EAN + QR Sbjct: 13 LPDNLYCK------GGFFIWRNPLSGQEMPLGYIKKNEAVRQAQEANQYIDTQRP----- 61 Query: 70 ISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLIS 129 + S W+ Y I R + NT + + + ++ G K I+ Sbjct: 62 -------MVEACPSVSQWMAEYLRILGYR----GVAANTLRARRSQIKAVQTVIGQKNIA 110 Query: 130 AVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI 189 V RDIA LL Y+ G A ++RS L +F+EA G + YNP T+ P ++ Sbjct: 111 QVTTRDIALLLHHYVLIGHLSAAGLMRSFLNALFREAIAAGLI--DYNPVTQTRTPPIRV 168 Query: 190 TRQRLSLEEWKKIFDIA---DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI 246 R+RL+ + ++ A + ++ ++ LAL+TGQR D+ +++ DI +D L VI Sbjct: 169 KRRRLTETMLQTVYAQALQLEPHKPWLPRSIELALLTGQRREDLCALRWQDIREDKLWVI 228 Query: 247 QEKTGSKIAIPLSLRLNAINW--SLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKAN 304 Q KTG+++A+ L L L ++ LR+V+ARCR S YL++ R G + + Sbjct: 229 QRKTGARLAMTLDLHLQLGDYPLRLREVLARCRIPGPSDYLLNSQRPRLNRRPGGSLVPD 288 Query: 305 TLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ--GLDTQKLLGHKTQQQTDRY 362 TLT FS+ D + E SP +FHE RSLS R+Y+ Q Q+LLGHK + T++Y Sbjct: 289 TLTKGFSRLMDKCGLV-QEISPPSFHEIRSLSSRMYQAQYGTEFCQRLLGHKNRHMTEKY 347 Query: 363 HDDRGKGWSKVAL 375 D R W + L Sbjct: 348 LDLREALWQMIEL 360 >UniRef50_D0L1C6 Lambda integrase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1C6_HALNC Length = 385 Score = 313 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 128/390 (32%), Positives = 194/390 (49%), Gaps = 33/390 (8%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGT-NEAEAIAIATEANTRLAE 61 R RK N NLY + Y+ Y++P GK + LG + EA A EAN R E Sbjct: 4 PRSRKKNDLPANLY-----EPRAGYFVYRNPENGKTYTLGRISRGEARDQAIEAN-RTFE 57 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 QR Q L I+ A + G+ T S WL++Y + LK ++ NT +Q + + + Sbjct: 58 QRAEQRL-INRLHAQALGE--TFSDWLNKYAEV----LKRRNLADNTMRQHKWRIKTMEQ 110 Query: 122 RAGMKL-ISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 + G + + + R A+ LD + + R A RS L+D F A G V NP Sbjct: 111 QFGAEPFVRLHETRHWAEWLDTFTEQDKTRSAIAWRSWLLDCFNAAIAAGWV--DRNPIE 168 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSD-- 237 + P + R RLSLE + I +A + +++ ++ LAL+T QR DI+ ++F Sbjct: 169 PIRAPTTIVKRDRLSLEAARAIICVAREQKDQWIARSIELALITAQRREDIASLQFRKRD 228 Query: 238 -----IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 + D L+V Q+KTG+++AIPL+L + I +L D + CRD+ S +L+H Sbjct: 229 AASGWVESDSLYVTQQKTGARLAIPLTLAMPEIGMTLGDAIDACRDHIASRWLIHQTNPH 288 Query: 293 SQAERGAQVKANTLTMNFSKARDLAR------IDWGEGSPATFHEQRSLSERLYKE-QGL 345 + G+Q+ +T+T F+ RD A + + P +FHE RSLS RL+ G Sbjct: 289 GNSPAGSQIWRDTITRRFADMRDEAARRSETPLWRQDKEPPSFHELRSLSLRLHTARHGK 348 Query: 346 D-TQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 D Q L GHK + TD Y D RG W K++ Sbjct: 349 DFAQALAGHKDARTTDTYRDIRGSEWVKLS 378 >UniRef50_A7FKY0 Integrase n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FKY0_YERP3 Length = 312 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 16/311 (5%) Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMK 126 I+A+ +RI + +T S W+ Y + R ++ T + ++ E + Sbjct: 16 IVALYNRINSV--AVVTVSDWVKTYTEVLSKR----GLKSKTITGYNSRLDVVDEVFASR 69 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 I ++ +DIA LL++Y G+ A+++RS L D F+EA G + NP ATK P+ Sbjct: 70 TIDSISTKDIATLLNDYTNNGKAASAKLMRSFLTDFFREAVSEGIIYN--NPVDATKNPK 127 Query: 187 RKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI 246 ++ R RLSL+ + I A ++ ++M LA+VTGQR+GD+ +MK+SDI DD L V Sbjct: 128 IEVKRARLSLDNFLSIRAAAADMPGWVVDSMDLAIVTGQRVGDVRKMKWSDIKDDKLFVE 187 Query: 247 QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTL 306 QEKTG +I IP ++L+ + SLRD++ARC + A+ + +++G TL Sbjct: 188 QEKTGMRIIIPFDVKLDTLLLSLRDIIARCENRAIKGETI------ISSDKGESFADKTL 241 Query: 307 TMNFSKARDLARIDWGEGSPATFHEQRSLSERLY-KEQGLD-TQKLLGHKTQQQTDRYHD 364 T F+KARDLA I W +P FHE RSL+ RLY KE G + +QK+LGHK+ Q TD+Y D Sbjct: 242 TKRFAKARDLANITWEGINPPPFHEIRSLASRLYEKEMGKEFSQKILGHKSAQTTDKYRD 301 Query: 365 DRGKGWSKVAL 375 RG W ++ + Sbjct: 302 VRGSEWIEIEV 312 >UniRef50_B4ESJ2 Integrase n=2 Tax=Proteus mirabilis RepID=B4ESJ2_PROMH Length = 333 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 190/373 (50%), Gaps = 45/373 (12%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ 62 +R KN PNLY K + Y+ T K ++G+N++ AI A +AN + + Sbjct: 4 SRSAKNKGLPPNLYL------RKGIYYYRDVRTKKEFSVGSNKSLAITEAIQANLAIYKP 57 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 + ++ DRI +T WLD Y+ ++ S ++ T + L++ Sbjct: 58 KE----SLVDRIN--NVHCVTLHEWLDTYRG----KVNSRGLKEKTLYDYESRIKLIKLH 107 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 I V RD+A + EY + MA+++RS ++D F EA G + NP T Sbjct: 108 FNDCPIENVTPRDVATFISEY---PKKAMAKLLRSTMLDAFNEAIADGVIKE--NPVSVT 162 Query: 183 KQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 K P+ + R RLSLEE+K + + +R+M LLA++T QR+ DI MK+ DI +D Sbjct: 163 KPPKTSVQRSRLSLEEFKYALEHTNDKYRHM---FLLAVLTAQRISDIINMKWDDIKNDR 219 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 L+V Q KTGSK+AIPLSLRL +I +S++DV+ + S + Sbjct: 220 LYVTQIKTGSKVAIPLSLRLESIGYSIKDVLN--------------LMNRSSDKICGNTT 265 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL--DTQKLLGHKTQQQTD 360 A TL F +A + + TFHE RSLS RLY+E+ +K+LGHK+ + TD Sbjct: 266 AKTLRGKFIEA-----LPEYLENKPTFHEIRSLSARLYEEEKSAEFAKKILGHKSMRMTD 320 Query: 361 RYHDDRGKGWSKV 373 +Y DDRG G+ ++ Sbjct: 321 KYLDDRGNGYVEL 333 >UniRef50_B4T7X0 Integrase n=14 Tax=Enterobacteriaceae RepID=B4T7X0_SALHS Length = 284 Score = 300 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 110/287 (38%), Positives = 164/287 (57%), Gaps = 11/287 (3%) Query: 84 TSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEY 143 S W+DRY+ + L+ ++ +NTYK ++ ++ +RE+ G +++ V R IA+ L+ + Sbjct: 1 MSAWIDRYEVL----LQRRNLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESW 56 Query: 144 IAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIF 203 I G+ MA +RSVL D+F+EA G + NP AT+ P K+ R+RL LE + Sbjct: 57 ITEGKNTMAGAMRSVLSDMFREAIVEGHIVK--NPVEATRIPEIKVARERLQLETYNATR 114 Query: 204 DIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLN 263 A+ + AM LALVTGQR DI MKFSD++D+ L+V Q KTG KIAIPLSL L Sbjct: 115 AAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLR 174 Query: 264 AINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGE 323 A L V+ RCR + + +++ + + + LT F KAR + +++ Sbjct: 175 ATGLRLGTVIDRCRLVSRTDFMIS--AGIRKNSPTGNIHPDGLTKTFVKARKASGVNFS- 231 Query: 324 GSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQTDRYHDDRGK 368 +P TFHE RSL+ RLYK + + QKLLGH ++ T Y D+R Sbjct: 232 NNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSENTTKLYLDERDN 278 >UniRef50_A1JLQ1 Phage integrase n=7 Tax=Yersinia RepID=A1JLQ1_YERE8 Length = 351 Score = 297 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 108/335 (32%), Positives = 178/335 (53%), Gaps = 21/335 (6%) Query: 1 MAARPRKNNVSVP-NLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTR 58 MA+RP++ + ++P NL Y R YW ++P+TGK LG +AI+ A +AN Sbjct: 1 MASRPKRYDANLPKNL--TYRRYYKSYYW--RNPLTGKEIPLGQIARRDAISQAIQANNY 56 Query: 59 LAEQRTRQILAISDRIATSKGKAI------TTSTWLDRYQAIQDDRLKSGDIRLNTYKQK 112 + + Q +A+ +R+ T ++WL RY + LK ++ NT K + Sbjct: 57 I--ESNFQPVALLERLQAPAPTPAAKAEINTVASWLKRYSEL----LKRRELAENTMKMR 110 Query: 113 AKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEV 172 + +++ G + I V + IA ++ Y+ G+ MA +RSVL DVF+EA G + Sbjct: 111 VLQIGYIKQEFGERPIETVTTKHIADFINTYVDNGKSSMAVNLRSVLSDVFREAIADGLI 170 Query: 173 PPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISR 232 NP AT+ P K+ R+RL + KI++ A ++ +M LAL+TGQR D+ + Sbjct: 171 --STNPVEATRTPSPKVKRERLDYAAFCKIYEAAGQQRNWVQLSMALALITGQRRDDVRQ 228 Query: 233 MKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 +K SD+ D L ++Q KT +IAI LSLRL +N ++ D++ +C + + S YL+ + Sbjct: 229 LKRSDVHDGKLWIVQSKTKMQIAISLSLRLEIMNTTVGDIIEKCLNNSKSEYLISSSNKS 288 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPA 327 S + GA + A++LT F KA + + PA Sbjct: 289 SGRKPGA-LNADSLTKAFVKALKATDLVYDISLPA 322 >UniRef50_B7V4V5 Phage integrase, putative n=2 Tax=Pseudomonas RepID=B7V4V5_PSEA8 Length = 370 Score = 287 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 120/385 (31%), Positives = 180/385 (46%), Gaps = 40/385 (10%) Query: 1 MAARPR-KNNVSVP-NLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTR 58 M+ RPR K N +P NLY R +RYK P GK+ G + A+AI A + N Sbjct: 1 MSPRPRNKANKGLPQNLYLDARR----GTYRYKRPTDGKWFPFGPDRAKAIDAAKQLNLE 56 Query: 59 LAEQRTRQILAISDRIATSKGK-AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 + +D + +G + +LD+Y+ + L ++ T A Sbjct: 57 --------FMRGADLVNKVQGAGSDLFVAFLDKYER---EILPPRELAKGTLDLYAVRFR 105 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 R + + + +R +A+LLD PR A R++L+D+F A G P N Sbjct: 106 QFRAAWPTQAVDEITIRMVAELLDSLT----PRAANQARALLVDIFNHAAAKGLCPD--N 159 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 PA +T K R+R ++E + I + ++ NA+ LAL+T QR DI M+F D Sbjct: 160 PAASTIARIEKKQRKRHTVEGLRAIR---EQAPAWLQNAIDLALITAQRRTDILAMRFDD 216 Query: 238 IWDDHLHVIQEKTG-SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF------R 290 + D L+V+Q+KT + A + R+ A L+ V+ARCRD S +L+H + Sbjct: 217 VRDGFLYVVQQKTAKASDAAWIRFRVTA---ELQAVLARCRDNVPSPFLIHRRPERKRQK 273 Query: 291 STSQAERGAQVKANTLTMNFSKARDLARI--DWGEGSPATFHEQRSLSERLYKEQGLDTQ 348 Q E +V+ LT F ARD A W E FHE R+LS LYK+ G D Q Sbjct: 274 QAEQKEHWTKVEERYLTRAFKDARDAAGCYSGWSEEEMPGFHEIRALSLHLYKKAGKDGQ 333 Query: 349 KLLGHKTQQQTDRYHDDRGK-GWSK 372 K+ GH +++ T Y D WS+ Sbjct: 334 KIAGHASEEMTRNYQRDHADVVWSE 358 >UniRef50_C5CJJ9 Integrase family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CJJ9_VARPS Length = 362 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 180/365 (49%), Gaps = 21/365 (5%) Query: 16 YPLYSRKVNKVYWRYKHPVTGKFHALGT-NEAEAIAIATEANTRLAEQRTRQILAISDRI 74 +P + Y+ + +PV K+ A+G A+A A EAN +EQ + L I Sbjct: 13 WPTGLHESRPGYFVWFNPVAKKYVAIGRVTLADARLQAIEANLWASEQLGKARL-----I 67 Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVR 134 + K T WL + + NT K + E G + + V+ Sbjct: 68 DRLQQKDKTVREWLKEWIGEL-------TLAENTLKSYRAKSKAINEEMGDLALGRLTVK 120 Query: 135 DIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL 194 D A LDE AQV RSVLI F A G + NPAL T+ + + RQR Sbjct: 121 DTANALDEIKKKRGAPTAQVARSVLISAFGNAITKGHMET--NPALVTEAKKTTVARQRF 178 Query: 195 SLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTG--S 252 + ++K++ ++ NA LLA++TG R DI+ +KF+D+ DD+L V +K+ Sbjct: 179 TTATFEKVWAGLQDGPPWLRNATLLAMITGLRREDIAGLKFTDVADDYLLVAPKKSQGMV 238 Query: 253 KIAIPLSLRLNAINWSLRDVVARCRDY-AVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 KIAIPL+L A+ SL+D +A CR VS Y+VH T ++ G ++ +T+TM FS Sbjct: 239 KIAIPLALYSEAMKMSLKDAIAVCRRTGVVSQYMVHQTEHTGRSSPGQRMSLSTVTMRFS 298 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKEQ-GLDTQKLLGHKTQQQTDRYHDDRGKGW 370 + A + GE TFHE RSL +R Y+ Q G+DT+ LLGH D Y ++RG + Sbjct: 299 EYVAKA-LGEGENL-PTFHELRSLCKRSYQAQGGVDTKALLGHLADSSADLYENNRGAEF 356 Query: 371 SKVAL 375 KV + Sbjct: 357 KKVKI 361 >UniRef50_D1S145 DNA integration/recombination/invertion protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1S145_SEROD Length = 287 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 122/298 (40%), Positives = 168/298 (56%), Gaps = 12/298 (4%) Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 I T TW +RY+ + D R G I T + + + G + +SA+ V DIA Sbjct: 1 MHDILTRTWAERYEKLMDARCHHGYITEKTKSDYTRMIRRVLNFWGDETLSAITVADIAD 60 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEE 198 + IAA P A+ R L D F+EAQ G +P GYNPAL T++P +T RL+L E Sbjct: 61 KIHH-IAAHHPHSARRFRLNLCDFFQEAQRDGLIPLGYNPALVTREPFTPVTTNRLTLSE 119 Query: 199 WKKIFDIADA-THRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIP 257 W IF A++ RY AMLLALV QR GDI + ++D HLH+ Q+KTG IA+P Sbjct: 120 WSAIFCRAESVAPRYFVIAMLLALVAAQRRGDIVSFHSTHVFDGHLHIRQQKTGEMIALP 179 Query: 258 LSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLA 317 L+LRLNA++ +L DV+A C S L+ Q G V +L+ F + RD Sbjct: 180 LNLRLNALDITLADVIAMC---PPSGLLL-------QQSNGKPVNTWSLSYWFKRCRDET 229 Query: 318 RIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 G P +F EQRSLSERLY+E+G+DT+ LLGH+ Q TD+Y+ RG+ + ++ L Sbjct: 230 IPRPKVGRPPSFREQRSLSERLYREEGIDTRTLLGHRHQSMTDQYNSLRGRDYRRLVL 287 >UniRef50_D2U4J7 Phage integrase n=5 Tax=Gammaproteobacteria RepID=D2U4J7_9ENTR Length = 392 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 100/405 (24%), Positives = 169/405 (41%), Gaps = 52/405 (12%) Query: 1 MAARPRKNNV-SVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 MAARPRK ++P+ L+ K +Y + GK +G ++A AIAIA E N + Sbjct: 1 MAARPRKREYRNLPDF--LFFDKSKNIYRLVL--INGKKKNIGNDKALAIAIAREYNNIM 56 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 R ++I+ I S GK + + + + +K + T + + Sbjct: 57 ---RPLLNISINSLIQESGGKFGEGLPFSEHVEHLFKRIVKDETPSITTLADWKNDIERV 113 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 +E L + + + + + +++Y + S L +F A + NPA Sbjct: 114 KEFFINILCTEISLEHVNEYINKYHGNASANVQNRKVSFLKKLFSYAIDESLMLD--NPA 171 Query: 180 L-ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF--- 235 ++ K R RLS +++KKI + A+ ++ AM LAL T Q ++SR+++ Sbjct: 172 ERKKRRRTDKKVRHRLSFDDFKKIRNAAE---PWLRTAMDLALQTTQARLEVSRIRYNIK 228 Query: 236 -------SDIWDD------------HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 IW H +Q+K S IAIP I L++++ Sbjct: 229 SPQEGICGCIWYKEPQNNIYGMLYIHRQKVQDKEASHIAIP-------IGAKLKEIIDNS 281 Query: 277 RDYAVSAYLVHFF------RSTSQAERGAQVKANTLTMNFSKARDLARI--DWGEGSPAT 328 RD S Y+VH + +S+ Q+ + L+ FS RD + + T Sbjct: 282 RDSIASPYVVHRLPIKRPSKISSEIHHPTQIAPDYLSRAFSNLRDQLGVTANLTLAERPT 341 Query: 329 FHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKV 373 FHE R+L+ L+K GLD Q + H + T Y + W +V Sbjct: 342 FHEIRALAAHLFKINGLDPQARMAHSDAKSTKIYTQNH-VDWVEV 385 >UniRef50_C6USQ2 Integrase n=3 Tax=Escherichia coli O157:H7 RepID=C6USQ2_ECO5T Length = 230 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 143/239 (59%), Gaps = 12/239 (5%) Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEE 198 +L+ Y+A G+ A+V+RS L+DVF+ A G V NP T+ + ++ R RL+ E Sbjct: 1 MLNTYVAEGKAVSARVIRSTLVDVFRGAIAEGHV--ATNPVTTTRAAKSEVRRSRLTANE 58 Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPL 258 + I+ A+ ++ +M LA+VTGQR+GD+ RMK+SDI D HLH+ Q KTG+KIAIPL Sbjct: 59 YVAIYHAAEHLPIWLRLSMDLAVVTGQRVGDLCRMKWSDINDGHLHIGQSKTGAKIAIPL 118 Query: 259 SLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR 318 +L ++A++ SL D + +CR+ + S ++ + T++ +KAR+ + Sbjct: 119 ALTIDALDISLVDTLQKCREASSSETIIASTYH-------EPLSPATVSRYLTKARNASG 171 Query: 319 IDWGEGSPATFHEQRSLSERLYKEQG--LDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 I + +G P TFHE RSLS RLY+ Q Q+LLGHK+ Y D RG+ W K+ + Sbjct: 172 ISF-DGDPPTFHELRSLSARLYRNQIGYKFAQRLLGHKSDSMAAHYRDSRGREWDKIEI 229 >UniRef50_Q2W5Z6 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Z6_MAGSA Length = 316 Score = 262 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 93/289 (32%), Positives = 149/289 (51%), Gaps = 17/289 (5%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 R K NLY + Y+ +++P+ GK H LG ++A A A EAN +A Sbjct: 5 RSIKRRGWPENLYET------RGYFIWRNPIDGKKHGLGRDKASASLQAIEANLHIAGML 58 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 T+ L DR+ ++ + W RY I +DR + T ++ ++ + ++E Sbjct: 59 TKSRLI--DRVLGGDDQS--VAAWCGRYAKILEDR----TLADETRREFSRRIGKIKETL 110 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 G + V + IA L + G+ RMAQ +RS+++D+F+EA G NP T+ Sbjct: 111 GSHQVDKVTTKHIADFLRPWTDDGKKRMAQAMRSLMLDMFREAVAAGWAKQ--NPVAVTR 168 Query: 184 QPRRKITRQRLSLEEWKKIFDIAD-ATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 PR + R RL+L+ + I +A ++G +M LALVT QR D++ M D+ + Sbjct: 169 APRVAVARARLTLDMFVAIHAVALRDQSPWVGRSMELALVTAQRREDVALMGRKDMREGR 228 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 L + QEKTG++++IP LRL A+NWS+ DV+ RC D ++ VH Sbjct: 229 LWITQEKTGARVSIPADLRLQAVNWSVGDVIQRCHDKILAPTFVHHSAH 277 >UniRef50_C4SF49 Integrase n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SF49_YERMO Length = 226 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 136/227 (59%), Gaps = 6/227 (2%) Query: 149 PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADA 208 +A +RSVL DVF+EA G + NP AT+ P K+ R+RL + KI + A Sbjct: 4 SSIALNLRSVLSDVFREAIADGLI--SSNPVEATRTPSPKVKRERLDYTAFCKIHEAASQ 61 Query: 209 THRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWS 268 ++ +M LAL+TGQR D+ ++K SD+ D L VIQ KTG++IAI LSLRL +N + Sbjct: 62 QQNWVQLSMALALITGQRRDDVRQLKRSDVHDGRLWVIQGKTGNQIAISLSLRLEIMNAT 121 Query: 269 LRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPAT 328 + D++ +C + + S YL+ +S E GA + A++LT F KA + + + SP + Sbjct: 122 VGDIIEKCLNNSKSEYLISSSNKSSGREPGA-LNADSLTKAFVKALKATDLVY-KISPPS 179 Query: 329 FHEQRSLSERLYK-EQGLD-TQKLLGHKTQQQTDRYHDDRGKGWSKV 373 FHE RSL+ RLY+ E G + QKLLGHK+ + T+ Y D R W ++ Sbjct: 180 FHEIRSLASRLYEAEYGKEFAQKLLGHKSMKMTNVYLDSRKNEWVEI 226 >UniRef50_B2TUZ8 Phage integrase n=4 Tax=Shigella RepID=B2TUZ8_SHIB3 Length = 228 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 84/217 (38%), Positives = 119/217 (54%), Gaps = 16/217 (7%) Query: 159 LIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAML 218 D+FK A G PA AT+ R ++ R RL ++E+ I IAD + + G M Sbjct: 26 FTDIFKTAIASGLAEED--PASATRPFRTEVKRSRLLIDEYLLIRKIADVQNEWFGLCMD 83 Query: 219 LALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRD 278 LALVTGQR GD++ M++ DI D L+V Q+KTG+KI I L ++ +N +L DV+ + Sbjct: 84 LALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLPTTISRLNLTLTDVLDNLKK 143 Query: 279 YAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSER 338 ++ G + A T+ F ARD + + W EG P FHE RSLS R Sbjct: 144 ----------INGKNEKLLGGK-TARTIAAQFRIARDTSGLKW-EGDPPPFHEIRSLSGR 191 Query: 339 LYK-EQGLD-TQKLLGHKTQQQTDRYHDDRGKGWSKV 373 L+ E+G D TQ LLGH++ TD+Y D RG+ W + Sbjct: 192 LHSAEKGSDFTQALLGHRSSSMTDKYRDGRGREWKDI 228 >UniRef50_B8K7Z4 Integrase n=2 Tax=Vibrio RepID=B8K7Z4_VIBPA Length = 380 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 148/383 (38%), Gaps = 56/383 (14%) Query: 36 GKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD----RIATSKGKAITTSTWLDRY 91 K LGT E EAI A N + + ++S+ R A SKG+ + L + Sbjct: 2 KKLFPLGTAEQEAIQAAHVYNLQYRPELG-SAFSLSEMTPFRKAVSKGRKDKFNRPLKDW 60 Query: 92 QAIQDDRLKSGD-IRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPR 150 + R+K+ + + + ++ + L E G L ++ ++ I + + +Y R Sbjct: 61 LPVVLARVKAEEKLSKDVFRNLERDCERLEEHMGKCLTKSLKLQHINEHICKYYEDLNNR 120 Query: 151 MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR---RKITRQRLSLEEWKKIFDIAD 207 S L +F + + L KQ R T+ R +L+ ++ I + Sbjct: 121 QLNGKISNLKKIFSYLADESAIESNF--VLNKKQRRLSKEDYTKARHNLD-YESYLQIYE 177 Query: 208 ATHRYMGNAMLLALVTGQRLGDISRMKFS-------------------DIWDD------- 241 A ++ AM L L T + +I R+++ D D Sbjct: 178 AAPLFLKVAMSLTLETTHAVREIYRLRYRIKKPREGVCGILWNAEGRVDYIDGQAIYGTL 237 Query: 242 --HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVS-AYLVH------FFRST 292 H +Q+ S +AIP++ +++D+V + + Y+VH + Sbjct: 238 YIHRQKVQKSETSAVAIPVT-------QAIKDIVDLSKTSRLHCPYVVHRKPRQLQRGIS 290 Query: 293 SQAERGAQVKANTLTMNFSKARDLARI--DWGEGSPATFHEQRSLSERLYKEQGLDTQKL 350 + + QV + ++ FSK RD + + T+HE R LS R+ +EQG+ + Sbjct: 291 KETDHLYQVHHHNISKEFSKVRDSLGLYGHLKKALRPTYHEIRGLSARMIEEQGISATER 350 Query: 351 LGHKTQQQTDRYHDDRGKGWSKV 373 + H T Y + W+ V Sbjct: 351 MAHANADTTKIYTRENDIRWNHV 373 >UniRef50_Q5R0D1 Integrase n=2 Tax=Alteromonadales RepID=Q5R0D1_IDILO Length = 383 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 93/401 (23%), Positives = 165/401 (41%), Gaps = 53/401 (13%) Query: 1 MAARPR-KNNVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEANT 57 MA R R N +P +K WRY++P +GK + + T +A+ A+ N Sbjct: 1 MAPRRRMTQNAGLPT-GLNQIKKRGVKRWRYRYP-SGKDVYLPVETTRHDAVEAASLFNA 58 Query: 58 RLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGD-IRLNTYKQKAKPV 116 + +++ +R A + L+ + R++ + + +T K Sbjct: 59 KYRNPT----ISLIER-------ADRYNKPLEYWLPKILRRVREEEQMSSDTQKTFEADC 107 Query: 117 SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 L G A+ +R + + L++Y + S L VF + + Sbjct: 108 ERLTLLFGKTYTKAITLRHVNEYLEKYCTGKSNNVYNRKISFLQKVFTYLIDESAMDLNF 167 Query: 177 NPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 K+ + R+RL+ E +K I + A Y+ AM L++ T + +ISR+++ Sbjct: 168 -ADQKKKKRKEGKRRKRLTAEAFKLIHEAASV---YLKVAMELSMQTTHAVLEISRIQYK 223 Query: 237 D-IWDD----------------HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDY 279 D +W D H +EK S++ IP++ L+ V+ R RD Sbjct: 224 DCVWLDKPVVEEGMMVFGYLRIHRQKTEEKEASRVEIPITKE-------LKRVIERSRDR 276 Query: 280 AVSAYLVHF-----FRSTSQAERGAQVKANTLTMNFSKARDLARI--DWGEGSPATFHEQ 332 +S Y+VH R + QV + ++ FSK RD + + + +FHE Sbjct: 277 LLSPYIVHRRGRYPKRVGEGCDHPTQVASKYISREFSKLRDQLGLFSELSKIERPSFHEI 336 Query: 333 RSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKV 373 R+LS R YK+ G D Q + H + T Y ++ K W++V Sbjct: 337 RALSARAYKDGGYDPQARMAHSDAKSTKVYTENH-KLWTRV 376 >UniRef50_A5W814 Phage integrase family protein n=4 Tax=Proteobacteria RepID=A5W814_PSEP1 Length = 326 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 139/367 (37%), Gaps = 56/367 (15%) Query: 4 RPRKNN-VSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ 62 RPRK + P +Y + Y+ + GK+ L + A+ Sbjct: 2 RPRKKDRHLPPCMYMKH-----GAYYLVRK---GKWERLDKDYQGALLA----------- 42 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 +I KG+ +D RL NT KQ L++ Sbjct: 43 --------YAKIMGGKGQG-EMPRLIDDALDAMRKRL-----AENTIKQYEAAAEKLKKY 88 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 V R +A L + + P MA V S L VF A V NP Sbjct: 89 LAEFEPRQVLPRHVAAL--KLHMSDTPNMANRVISFLRMVFNYALEQQIV--DSNPCTGI 144 Query: 183 KQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 K+ K + ++ EE+ I DA Y+ + + + +TGQR+GD+ +K SDI + Sbjct: 145 KRHTEKKRDRYITDEEFAAI---CDAASPYIRSILEMCYLTGQRIGDVLAIKLSDISEKG 201 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 + Q+KTG+K+ + + L ++AR + + F + G V Sbjct: 202 IAFDQQKTGAKLIV-------GMTPDLEQLIARTKAIPRKVRGLTLFCTRGG---GKPVS 251 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRY 362 T+ F KA + A++ AT H+ R+ S +QG D QKL GH + T+RY Sbjct: 252 YETVKDAFKKACEKAKVT-----GATIHDLRAKSLTDTDDQGNDAQKLGGHTNAKMTERY 306 Query: 363 HDDRGKG 369 R Sbjct: 307 LRLRKID 313 >UniRef50_A7JSJ8 Possible integrase/recombinase n=2 Tax=Mannheimia haemolytica RepID=A7JSJ8_PASHA Length = 351 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 143/376 (38%), Gaps = 59/376 (15%) Query: 3 ARPRK--NNVSVPNLYPL-YSRKVNK--VYWRYKHPVTGK-FHALGTNEAEAIAIATEAN 56 RPRK N NL P +RK K +YW Y+ GK +LGTN EA A + N Sbjct: 2 GRPRKQQNRYLPENLRPKTVTRKSGKTVIYWLYR--THGKTEISLGTNRNEAFIKAAQLN 59 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRY--QAIQDDRLKSGDIRLNTYKQKAK 114 Q R IT RY + I + + L Sbjct: 60 IERESQTAR----------------ITFGLVAKRYRDEVIPQKKASTAQTDLC------- 96 Query: 115 PVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPP 174 + L + + + I + + P A S+ +++ A+ +G Sbjct: 97 KIKNLLLFFNDAPLEEITPQHIREYM--IWRKDTPGSANNEFSMFSHIWQYAREWGY-TN 153 Query: 175 GYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 +P + K+ + + ++ ++++AD M + M LA +TGQR D+ ++ Sbjct: 154 LPSPNIGMKRYPIRKREIYVENNIFQMVYEVADQD---MRDLMDLAYITGQRPVDLVNIR 210 Query: 235 FSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 I+D +LH++Q+KT +K+ I + +L I +D A H F + Sbjct: 211 KEHIFDGYLHIVQQKTQAKLRIEIVGKLADI----------IQDRLEKATGTHLFST--- 257 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWG----EGSPATFHEQRSLSE--RLYKEQGLDTQ 348 ++G ++ A L F+ R+ A + E F + R+ S + + Sbjct: 258 -KKGEKLTARKLGKRFTYIREQAVKNNPEYANEIMAFQFRDLRAKSGTDKALSLGEEAAR 316 Query: 349 KLLGHKTQQQTDRYHD 364 + LGH + Q T Y Sbjct: 317 QQLGHTSVQMTKTYIR 332 >UniRef50_C0DS64 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DS64_EIKCO Length = 355 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 148/374 (39%), Gaps = 41/374 (10%) Query: 10 VSVPNLYPLYSRKVNKVYWRY---KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 ++P KVY+ Y P K+ LG++ EA+ + +++ T + Sbjct: 6 RNLPMRMRQKKTSSGKVYFYYDTCAKPR--KWLPLGSDFFEALRKYADYEQEYSQELTAR 63 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA--- 123 I + T +RY L T + L E Sbjct: 64 I-----------EREATFRVVAERYVRTVLPTLSPR-----TQSDYLYQLKFLYEYFDGD 107 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 I+ + DI + L E+ A + R A ++ +F A+ +G NP Sbjct: 108 NPAPINQILSVDIYEYL-EWRQAAKIR-ANREIALFSVIFNWARKWGY-TNNENPCRGVN 164 Query: 184 QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 + + ++ E++ ++++ A+ R++ ML+A GQR+ D +++ +DI D L Sbjct: 165 KYQETGRHVYITDEQYWRLYECAE---RHLQLLMLVAYFIGQRVADCLKIRTTDIKDGEL 221 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 + Q K +K+ I L+ L + D++ R R YL F Q RG + Sbjct: 222 WIEQNKVQTKVRIKLTGELAEV----LDLILRERGEQKHDYL--FVSLGRQRHRGQPMTY 275 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ-GLDTQK-LLGHKTQQQTDR 361 L +AR+ A I E + F + R+ + + G++ + LLGH TQ T R Sbjct: 276 AMLRGAMDRAREKAGI---EKAAFQFRDLRAKAATDTDDAVGIEAARVLLGHTTQNMTKR 332 Query: 362 YHDDRGKGWSKVAL 375 Y +R S+ A+ Sbjct: 333 YIRNRKGHLSEPAV 346 >UniRef50_C0X0P7 Phage integrase family site specific recombinase n=4 Tax=Enterococcus faecalis RepID=C0X0P7_ENTFA Length = 369 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 142/326 (43%), Gaps = 34/326 (10%) Query: 61 EQRTRQILAIS----DRIATSKGK-AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKP 115 Q RQ L ++ I S+G+ A T + W++++ I +++L+T+ + Sbjct: 40 YQEVRQKLYVAKANQQTIYQSRGQGAFTLNEWIEQWLVIVKK-----EVKLSTFASYSYK 94 Query: 116 VS-LLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVP 173 +S + + G ++ +D + +L+++ IA G V+ +L A + Sbjct: 95 LSNYVLKTMGDSALNEIDDLRLNKLVEDLIAQGLSKSTICVIFGILSRALNHAVKAKHLK 154 Query: 174 PGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRM 233 ++ +P+R+ R L +EE KK+ ++A + G ++++AL TG R+G+++ + Sbjct: 155 SNPCSTISLPKPKRRHIRA-LDIEEQKKLENVAYKNPQQQGLSVIVALHTGLRIGELAAL 213 Query: 234 KFSDI--WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 ++ DI D +HV + T ++++ + + + R +S + + + Sbjct: 214 RWEDINFKKDTIHV--KHTFQRVSVSSFGESTQLYYDCTKTINSERIIPMSNTVKNALKC 271 Query: 292 TSQAERG--------AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERLYKE 342 + +G + LT F K RD ++D FH+ R + + R + Sbjct: 272 QKEHSQGKFVFSRNNKPCEPRLLTYYFHKLRDKVQLD-----KVHFHQLRHTFATRCLES 326 Query: 343 QG--LDTQKLLGHKTQQQT-DRYHDD 365 + LLGH + Q T D Y D Sbjct: 327 TSDIVSVSALLGHSSTQMTLDIYADS 352 >UniRef50_Q2W3R2 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W3R2_MAGSA Length = 335 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 81/363 (22%), Positives = 139/363 (38%), Gaps = 50/363 (13%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 Y + ++ Y+ G++ +I ATE R + +D + + Sbjct: 2 KYVTETKPGHFYYR--RNGRYWGRLPGLPGSIEFATEY--------ARLNASFAD-VGKT 50 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIA 137 T ++ Y A + R +++ T + +LR R G ++ ++V+ + Sbjct: 51 PAVPGTFDAMVEAYLASGEYR---QNLKQKTKDAYRYDLDILRTRFGKFRVADIEVKHVL 107 Query: 138 QLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLE 197 ++ D + A +P A + L VF G + NPA + + ++L + Sbjct: 108 KMRDFF--ADKPGKANTLVRTLRVVFGWGIGRGLMKT--NPAD-----LKGVNVKKLKIG 158 Query: 198 EWKKIFDIADAT-----HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGS 252 K A A ++ A L L TGQR GD+ R+++ DI D +HV QEKTG Sbjct: 159 AHKPWAPAALAKFRAEGQPHLVLAFELGLATGQRQGDLIRLRWDDISDGVVHVAQEKTGK 218 Query: 253 KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ-VKANTLTMNFS 311 ++ +P+S L V+AR AV+ + RG +KAN L F Sbjct: 219 ELWLPVSKHLAG-------VLARAPRQAVTVLV---------NSRGTPWIKANPLAQAFG 262 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWS 371 A I FH R + + G T+++ Q H RG Sbjct: 263 -----AEITRLGLDGLVFHGLRKTAAVALADVGCSTKQIAAVTGQSDQMVEHYTRGADQK 317 Query: 372 KVA 374 ++A Sbjct: 318 RLA 320 >UniRef50_C2I7M1 Integrase n=1 Tax=Vibrio cholerae TM 11079-80 RepID=C2I7M1_VIBCH Length = 237 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 99/241 (41%), Gaps = 39/241 (16%) Query: 159 LIDVFKEAQHYGEVPPGYNPALATKQPRRKI-TRQRLSLEEWKKIFDIADATHRYMGNAM 217 + VF A + NPA K+ + RQRLSL E+K I+ IA ++M AM Sbjct: 1 MSKVFDYAVDESVMVD--NPAKRKKRKPKDGKQRQRLSLAEYKTIWAIA---PKWMRIAM 55 Query: 218 LLALVTGQRLGDISRMKFSDIW--------DD---------HLHVIQEKTGSKIAIPLSL 260 L+L T + ++ MK+ I D H ++ K S++ IP++ Sbjct: 56 DLSLETTHAVNEVCAMKYEHITWLSEPAVEDGVEVFGHLRIHRRKVKTKEASRVVIPVT- 114 Query: 261 RLNAINWSLRDVVARCRDYAVSAYLVHFF------RSTSQAERGAQVKANTLTMNFSKAR 314 SL ++ +D S Y+VH + + QV L+ FSK R Sbjct: 115 ------RSLLKIIEDSKDDVDSPYIVHRLPEKFSNEVSQHCDHFTQVNRKYLSRFFSKLR 168 Query: 315 DLARI--DWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSK 372 D A++ TFHE R LS LY + G D Q H + T Y + K W + Sbjct: 169 DQAKVKKSIAVDCRPTFHEIRGLSIHLYDKAGHDPQSRAAHTDARSTKIYKEGHEK-WVQ 227 Query: 373 V 373 V Sbjct: 228 V 228 >UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q1GLB2_SILST Length = 411 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 78/345 (22%), Positives = 136/345 (39%), Gaps = 41/345 (11%) Query: 29 RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWL 88 +Y+ + ++G + + A + + Q + ++ I+ + KA T + Sbjct: 63 QYRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENP-AEEISQHR-KAPTVAALC 120 Query: 89 DRY-QAIQDDRLKSGDIRLNTYKQKAKPVSLLR-ERAGMKLISAVDVRDIAQLLDEYIAA 146 +R+ +A +R K +T K+ + + L G + V+ RDIA+L ++ Sbjct: 121 ERFFEAHAKERCKP-----STQKEYRRAIDLFIVPALGSFKVVDVERRDIAELHHKF--R 173 Query: 147 GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIA 206 +P A VL +F A+ +G P G NP + R + LS E +++ + Sbjct: 174 DKPHQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRERFLSQSELQRLGQVL 233 Query: 207 DATHR------YMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSL 260 R +M A L ++TG RLG+I +K+ I + + + KTG++ IPL Sbjct: 234 TEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWGYITANGMELPDSKTGAR-RIPLP- 291 Query: 261 RLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARID 320 RDV+AR Y++ G L + + RD A + Sbjct: 292 ------QPARDVLARLPRTPGHPYVI------EGKLPGQYATD--LQHPWRRIRDRAGL- 336 Query: 321 WGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTDRY 362 H+ R G+ Q +LLGH Q T RY Sbjct: 337 ----CGVRIHDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTTMRY 377 >UniRef50_Q1LEK8 Phage integrase n=4 Tax=Burkholderiaceae RepID=Q1LEK8_RALME Length = 151 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 5/148 (3%) Query: 233 MKFSDIWDDHLHVIQEKTG--SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFR 290 M+F + L+V Q+K+ +K+ IP+S+ L A+N ++ D + CRD +S ++ R Sbjct: 1 MRFDAVKGGFLYVEQQKSKGRTKLKIPISVGLTALNMTIEDAIRGCRDSILSKSIIPHVR 60 Query: 291 STSQAERGAQVKANTLTMNFSKARDLARIDWGEG-SPATFHEQRSLSERLYKEQ--GLDT 347 A+ G K + + F+K RD A+I G +P +FHE RSL+ LY E+ Sbjct: 61 HKGVAKPGDSPKLASFSDAFAKFRDPAKIKVPTGRTPPSFHEIRSLAAHLYSEEYGPEFA 120 Query: 348 QKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 Q LLGHK+ T Y D RG+ W++V + Sbjct: 121 QALLGHKSAAMTALYRDSRGREWAEVKV 148 >UniRef50_C0DYX2 Putative uncharacterized protein n=2 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYX2_EIKCO Length = 344 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 131/382 (34%), Gaps = 61/382 (15%) Query: 3 ARPRKNNVSVPN--LYPLYSRKVNK--VYWRYKHPVTG--KFHALGTNEAEAIAIATEAN 56 R R N ++P+ L +RK K VY+ Y G K LGT+ A+ Sbjct: 2 GRKRSANSNLPDRMLARRRTRKNGKTTVYYYYDGREDGRRKEIPLGTDYIAAVQE----- 56 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQA-IQDDRLKSGDIRLNTYKQKAKP 115 + + K +T +RY I R NT Sbjct: 57 -----------WSKLEAAKLPKSARVTFPVAAERYLQNIISHR------SRNTISSANNA 99 Query: 116 VSLLRERAGMK---LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEV 172 V L + G + + ++ + + LD P A L +F A+ G Sbjct: 100 VRKLSKFFGGENPAPLDEIEPAHVRRYLD--WRKDTPGGANNEIGYLSAIFNYAREQGW- 156 Query: 173 PPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISR 232 NP K+ +K + ++ ++ A M + M +A +TGQR DI Sbjct: 157 TSKENPCRNVKKHSKKRREVYIEDYLYQAVYQAASQQ---MRDLMDIAYITGQRPVDIVG 213 Query: 233 MKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 + S I + LH+ Q+KTG+K+ +S + L++++ R +L Sbjct: 214 IHSSHIHEGILHISQQKTGAKLRFEISGK-------LKEIIDRIHQDNGYLFL------- 259 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWG----EGSPATFHEQRSLSERL--YKEQGLD 346 G + L+ F + R E S F + R+ + Sbjct: 260 --NSHGKPLSRAALSRQFLELRKTVMQQRPELAEELSAFQFRDLRAKAATDIYLAADTRS 317 Query: 347 TQKLLGHKTQQQTDRYHDDRGK 368 LGH ++Q T Y RGK Sbjct: 318 ASDQLGHASEQMTKIYIR-RGK 338 >UniRef50_A3MZK6 Predicted phage integrase family protein n=5 Tax=Pasteurellaceae RepID=A3MZK6_ACTP2 Length = 346 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 146/374 (39%), Gaps = 53/374 (14%) Query: 3 ARPRK--NNVSVPNLYPLYSRKVNK--VYWRYKHPVTGKFHALGTNEAEAIAIATEANTR 58 ARPRK NN NL ++ + V + Y K +LGTN+ EA+ A + N Sbjct: 2 ARPRKRENNGLPQNLLCRRRKRASGQIVEYFYYVMADSKEKSLGTNKYEAVLEAAKLNFE 61 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 KG+ + RY+ K+ + R + + + Sbjct: 62 F----------------QKKGEVVLFIDVAKRYEVEIVPTKKAKNTRQSNL----QAIGW 101 Query: 119 LRERAGM--KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 L + G + ++ + I Q L P +A + + ++ A+ +G Sbjct: 102 LCKFFGDPPIPLERIEPQHIKQYLQ--WRKDTPAVANIEVGLFNTIWNSAREWGY-TSLP 158 Query: 177 NPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 +P+ K+ K + +KI++ AD M + + A + GQR DI + S Sbjct: 159 SPSQGVKKFPTKYREIYVEDYILEKIYEFADER---MADIIETAYLLGQRPIDICNIHRS 215 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 I++ LH+ Q+KTG K+ ++ R L++++ + R + +L + Sbjct: 216 HIYNGILHITQQKTGKKVRFEITGR-------LKEIIDK-RLQPETTWLF-------TNK 260 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGS----PATFHEQRSLSERLYKEQGLD--TQKL 350 G ++ LT++F + R+ A + E + + R+ + D QK Sbjct: 261 WGKKLDRQILTVHFREIREKAMRAYPELANEIGKVQMRDMRAKAATDISLTATDEQAQKQ 320 Query: 351 LGHKTQQQTDRYHD 364 LGH +++ T Y Sbjct: 321 LGHTSKRMTQHYIR 334 >UniRef50_B2JXK0 Putative uncharacterized protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JXK0_BURP8 Length = 194 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 68/183 (37%), Positives = 95/183 (51%), Gaps = 6/183 (3%) Query: 178 PALATKQPRRKITR--QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 P K R R + A ++ NAMLLAL++GQ L I R + Sbjct: 2 PTTGVKPAMISALRHQDRAIRVALVATLEQAPKVALWLQNAMLLALISGQALSTIGRWER 61 Query: 236 SDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCR-DYAVSAYLVHFFRSTSQ 294 + + + V + KTG IAIPL LR+ IN SL +++ARC+ VS YL+ R Sbjct: 62 ASVKNGGAVVTRAKTGVSIAIPLELRMETINMSLGEIIARCKASCVVSKYLIRHLRGNVN 121 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLY-KEQGLDTQKLLGH 353 A +G+ +K T++ F R LA TFHE RSLS+RLY +E G+DT+ LLGH Sbjct: 122 APKGSAIKLKTISEKFLPVRRLAGYTADGD--PTFHEIRSLSKRLYLEEDGVDTKALLGH 179 Query: 354 KTQ 356 +T+ Sbjct: 180 RTR 182 >UniRef50_Q8DFY9 DNA-directed RNA polymerase, beta subunit/140 kD subunit n=1 Tax=Vibrio vulnificus RepID=Q8DFY9_VIBVU Length = 224 Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 37/223 (16%) Query: 177 NPALATK-QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 NPA +P+ + R+ L+L E+K I+ + M AM L+L T + +I MK+ Sbjct: 4 NPAKRKNVRPKEEKQRRDLTLSEYKSIWASLLSG---MRVAMDLSLETTHAVNEICAMKY 60 Query: 236 SDIW--------DD---------HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRD 278 DI D H +++K S++ IP++ SL +++ +D Sbjct: 61 EDITMLDAPVLEDGVEVFGYLRIHRRKVKKKEASRVVIPVT-------RSLLNIIEASKD 113 Query: 279 YAVSAYLVHFFRSTSQ------AERGAQVKANTLTMNFSKARDLARIDWGE--GSPATFH 330 S Y+VH + QV L+ FSK RD ++ G T+H Sbjct: 114 NIDSPYVVHRLPEKRSNDVSQYCDHLTQVNRKYLSRFFSKLRDQVKVKKGVPADCRPTYH 173 Query: 331 EQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKV 373 E R LS LY + G D Q H + T Y + K W +V Sbjct: 174 EIRGLSIHLYDKAGHDAQARAAHTDSRSTKIYKEGHEK-WVQV 215 >UniRef50_Q4ZSI8 Phage integrase:Phage integrase, N-terminal SAM-like n=41 Tax=root RepID=Q4ZSI8_PSEU2 Length = 344 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 70/359 (19%), Positives = 131/359 (36%), Gaps = 49/359 (13%) Query: 18 LYSRKVNKVYWRYK---HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRI 74 ++ VY+ Y P K LG++ AI +++R A+ ++ Sbjct: 16 KRKQRSGVVYYYYDIGGSPR--KEIPLGSDYGMAIVE------YAKLEKSRTSSALVQQV 67 Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA--GMKLISAVD 132 +T + ++Y T K A+ + L + + A++ Sbjct: 68 -------LTFAYVAEKYMIEVVP-----TKSPATQKDNARELKQLLKFFDDPPAPLEAIE 115 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 + + Q L + P A +++L ++ A G NP K + Sbjct: 116 PQHVVQYLRQ-RGKTAPVRANREKALLSAIWNFAMSAGY-TALANPCAGVKGHKEVGRDH 173 Query: 193 RLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGS 252 + E + ++ A+ + +A+ L +TGQR+ D +M DI D L V Q KT + Sbjct: 174 YIEDEMFALVYSHAEQP---LRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNA 230 Query: 253 KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS--QAERGAQVKANTLTMNF 310 K I ++ L + D ++ H R++ + G + ++ L F Sbjct: 231 KRRIEITGELKVVI-----------DRIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRERF 279 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDR 366 AR+ A ++ GE + R+ + E D + LGH T T+ Y R Sbjct: 280 DAAREAAGVEKGE---FQMRDLRAKAGTDKAESSGDILQARDQLGHTTVVMTENYIRKR 335 >UniRef50_B2UKS9 Integrase family protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UKS9_AKKM8 Length = 416 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 61/355 (17%), Positives = 130/355 (36%), Gaps = 38/355 (10%) Query: 44 NEAEAIAIATEANTRL---AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLK 100 +A+ +A A E+ R A Q R I A+S + + + WLD + R+ Sbjct: 66 TKAQRLADALESTARANLPAYQLRRAISALSTELTGESMEMPSVKLWLDDHMR----RIT 121 Query: 101 SGDIRLNTYKQKAKPVSLLRERAGMK---LISAVDVRDIAQLLDEYIAAGRPRMAQVVRS 157 ++ + + R G + + + + + ++ P A + + Sbjct: 122 RNGLKPASIANYKQAFDKFRASMGERINLPLDRITPLMLDDFKNHLLSRVSPSTANIALT 181 Query: 158 VLIDVFKEAQHYGEVPPGYNPALATKQPRR--KITRQRLSLEEWKKIFDIADATHRYMGN 215 ++ F+ A Y + NP A +P + + R++ LEE +K+ + R M Sbjct: 182 LVSAAFQAAVDYKIIET--NPFTAITKPHKGKAVKRRKFELEELEKVMAACNPEWRSMVK 239 Query: 216 AMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQEKTGSKIAIPLSLRL----------- 262 L GQRLGD++ +++S D + + +K G + IP+ L Sbjct: 240 TCL--YTGGQRLGDVATLRWSQVDEKRGVIRMTTQKKGKPLMIPIFPALKKHLQQRKKEA 297 Query: 263 --NAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARID 320 + ++ ++ +S H + + A + K Sbjct: 298 PGDFLHPECANIFESKGSGRLSNIFSHILYQCGLIAK-DPLAAG---KKYKKQEGNGTET 353 Query: 321 WGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGHKTQQQTDRYHDDRGKGWSK 372 + +FH R + + + G+ Q ++GH +++ + Y D K +++ Sbjct: 354 RRHVNELSFHSLRYTATTMLHDAGVPPALVQAIVGHDSREVHEGYIDFGAKEFTQ 408 >UniRef50_Q2SDK0 Integrase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDK0_HAHCH Length = 159 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 10/161 (6%) Query: 213 MGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDV 272 M NAM LAL+T QR DIS+MKF DI D +L+VIQEKT L + I L++V Sbjct: 1 MKNAMDLALLTLQRREDISKMKFEDIKDGYLYVIQEKTKKHDTGYLRIE---IGEQLQEV 57 Query: 273 VARCRDYAVSAYLVHFFRSTS----QAERGAQVKANTLTMNFSKARD-LARI--DWGEGS 325 + RCR S ++++ +++ QV + ++ F RD + ++ EG Sbjct: 58 LKRCRTDIPSPFIINRRPQRKFKRIKSKHWTQVLPDMISREFKSIRDSQVGLYENYQEGE 117 Query: 326 PATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDR 366 TFHE R+L E+LYK+QG D ++L G +++ Y Sbjct: 118 KPTFHEIRALGEKLYKDQGKDPKQLGGWASEKMVKNYDSGH 158 >UniRef50_Q88G06 Phage integrase, putative n=12 Tax=Gammaproteobacteria RepID=Q88G06_PSEPK Length = 349 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 136/377 (36%), Gaps = 50/377 (13%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYW--RYKHPVTGKFHALGTNEAEAIAIATEANTR 58 M R +N P +Y +K N W Y +GK LG + +A E Sbjct: 1 MRPRKTENRDLPPGMYRRKRQKANGKVWEALYYRDRSGKDIFLGNDLVKAKLKWAEL--- 57 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQ-AIQDDRLKSGDIRLNTYKQKAKPVS 117 + ++ + T KG D Y I + + T K + Sbjct: 58 -------EAKSVPKELTTMKGIF-------DEYLLKIVPGK------AVRTQKDNIYELK 97 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 LR I A+ IAQ D A R A ++L VF A+ +G N Sbjct: 98 QLRNVFDSAPIDAITPAMIAQYRDSRSAKTR---ANREIALLSHVFNTAREWGLTTRD-N 153 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 P L ++ + K + W+ ++ + + +AM LA +TGQR D+ M+ D Sbjct: 154 PCLGVRKNKEKPRDFYANETVWQAVY---EEAPPELKDAMDLAYLTGQRPSDVLSMRKDD 210 Query: 238 IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 + +L V Q KTG ++ I L ++ + SL ++ R + H E Sbjct: 211 MEGIYLLVSQGKTGKRLRI--VLEVDGVKNSLGLLLER----IMHRTSGHLSPFFIVNEH 264 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPA---------TFHEQRSLSERLYKEQGLDTQ 348 G ++ L ++ AR+ AR+ F + R + + D Sbjct: 265 GKRMSWPMLRNRWADAREDARVKAEVEKKPDLANRIAQFQFRDIRPKAASEINDL-SDAS 323 Query: 349 KLLGHKTQQQTDR-YHD 364 LLGH + T+R Y Sbjct: 324 VLLGHSKEGITERVYRR 340 >UniRef50_A6T076 Phage-related integrase n=2 Tax=Burkholderiales RepID=A6T076_JANMA Length = 342 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 77/378 (20%), Positives = 140/378 (37%), Gaps = 52/378 (13%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRY-KHPVTGKFHALGTNEAEAIAIATEANTRL 59 M +P N P++ + K Y+ + K LGT+ EA+ E Sbjct: 1 MGRKPTVNRHLPPHMRARI--RSGKTYYFFDLGGRPRKESPLGTDYIEALRKYVE----- 53 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRY--QAIQDDRLKSGDIRLNTYKQKAKPVS 117 LA + T +Y + I +T + + + Sbjct: 54 --------LAGDETPVHEA----TFDDLSKKYKLEEIPSK-------AESTRRVQNSDIK 94 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 L + + + + Q L + A P A + + ++ +A+ +G N Sbjct: 95 HLDKFFAKAPLGEIRPMHMQQFLQFHKA--TPTTANRCKRLFSSMWNKARAWGY-TDEPN 151 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 P + E +K +++ A + +AM L +TGQR GD + + Sbjct: 152 PCTGIAGFTLGKRETYTTDEVFKAVWECASEP---LRDAMDLTYLTGQRPGDALKSTEHE 208 Query: 238 IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 I D +L + Q KT K+ I + L A+ + R ++ +VH + + Sbjct: 209 ISDSYLSIQQGKTKQKLRIAIVGELAAL-------IDRIKERKRKYKVVHTALLVNT--Q 259 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSP----ATFHEQRSLSERLYKEQGLDTQK---L 350 G Q+ L +F AR+ A + E P F++ R+ + E+ +D Q L Sbjct: 260 GMQLTKAVLRKHFDAAREKACEKYPELEPEIKAFWFYDLRAKAADDKAEE-IDEQAASDL 318 Query: 351 LGHKTQQQTDRYHDDRGK 368 LGH++ + T R++ RGK Sbjct: 319 LGHESTKTTRRHYLRRGK 336 >UniRef50_UPI00016AE785 Phage integrase:Phage integrase, N-terminal SAM-like protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AE785 Length = 238 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 19/225 (8%) Query: 152 AQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHR 211 A VL +F A+ G + NP L K+ + + ++K++D AD R Sbjct: 28 ANRDIEVLSHMFNFAREIG-MTKAANPCLGIKKYSESGRDVYVEDDLFRKVYDHADQPTR 86 Query: 212 YMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRD 271 +AM LA +TGQ+ D DI D+ LH+ Q KTG K+ + ++ L A Sbjct: 87 ---DAMDLAYLTGQQPQDTLPHDERDIRDNFLHIDQGKTGKKLRMEVTGALMA------- 136 Query: 272 VVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHE 331 V+ R R +V + E+G ++ +TL F AR A + + F + Sbjct: 137 VINRIRARKAGYKIVSTALVVN--EKGERMTLDTLQRRFRDARRKADV---RDNEFQFRD 191 Query: 332 QRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWSKV 373 R+ + + D Q+ LGH + T+ Y +R K Sbjct: 192 LRAKAGTDKTDSTGDIRQAQRQLGHTSVAMTEHYVRNRRGDKVKP 236 >UniRef50_A9C3M6 Integrase family protein n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C3M6_DELAS Length = 342 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 60/305 (19%), Positives = 110/305 (36%), Gaps = 38/305 (12%) Query: 74 IATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDV 133 + + + + + + A R + T A + E V Sbjct: 51 MEQADQTRDSMAALIADWLAEVGSRH-----SVKTQANDAYQTRTISESFQEFRAQEVTA 105 Query: 134 RDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR 193 I + L + + +PR RS+L ++ + A+ G PPG NP + K K + Sbjct: 106 PAIVEFLKHF--SDKPRTYNAYRSMLRELMRFAEEKGYRPPGTNPVDSLKTMSVKARTRY 163 Query: 194 LSLEEWKKI---FDIADATHRYMGNA-----MLLALVTGQRLGDISRMKFSDIWDDHLHV 245 ++ E ++I D R + +A +TGQR+GD+ +++SD+ + Sbjct: 164 ITDSEVRRIKVAVMYGDDGKRTRSGHTICALIDMAYLTGQRIGDLLTLRWSDVGKQGITF 223 Query: 246 IQEK----TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAY--LVHFFRSTSQAERGA 299 K TG+++ I + RL + LR + + D+ + + S A + A Sbjct: 224 QPAKTEGSTGAQVLIAWTQRLRNVVDRLRALPNQSPDFVFCTLQGQPYTYSGASTAWKRA 283 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQT 359 +A +F R A D G ++ Q++ H TQ QT Sbjct: 284 VKRAGVKDCHFHDLRGKALTDVDRGRGI-----------------MEAQRMGAHSTQSQT 326 Query: 360 DRYHD 364 Y Sbjct: 327 ADYVR 331 >UniRef50_D2YQV3 Phage integrase family protein n=2 Tax=Vibrio RepID=D2YQV3_VIBMI Length = 402 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 141/368 (38%), Gaps = 47/368 (12%) Query: 23 VNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD--RIATSKGK 80 + +RY T K LG A I A + +A R+I +D I K Sbjct: 53 RKRFLFRYTLHGTKKSIQLGEYPALDINTARQ----IANDHKREIALGNDPKAIRDEKRN 108 Query: 81 AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQL 139 +T + + + L + T K A + L + G K ++ + +DI +L Sbjct: 109 VLTFQEFSELH------YLPYAMMNKLTAKSDAGSLKLHFYSKWGKKPLTDIGQQDIQKL 162 Query: 140 LDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEE 198 LD + +P +RS+++ +F+ A +G V NP ++ + RQR LS E Sbjct: 163 LDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYV--DSNPGQYIRKLKENNVRQRFLSRAE 220 Query: 199 WKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSD--IWDDH---LHVIQEKTGS 252 + +R NA+ AL+TG R+G+I+ K+ + DD L + K+G Sbjct: 221 VSSFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWECLTVDDDGNWSLFLPHTKSGL 280 Query: 253 KIAIPLSLRLNAINWSLRDVVARCRDY--AVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 R +N ++V+ R + + Y+ + G + F Sbjct: 281 S-------RTVLLNHLAKEVINDQRRFQQLKNPYI------FAGDAPGRPIAHPK--KAF 325 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQG----LDTQKLLGHKTQQQTDRYHDDR 366 ++ + A I H+ R + G D Q LLGH++ Q + RY Sbjct: 326 ARIKKAAGIT----DNFRIHDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLA 381 Query: 367 GKGWSKVA 374 +V+ Sbjct: 382 SSRLREVS 389 >UniRef50_B7V6G8 Integrase n=5 Tax=root RepID=B7V6G8_PSEA8 Length = 349 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 132/380 (34%), Gaps = 56/380 (14%) Query: 1 MAARPRKNNVSVPNLYPLYSR-KVNKV----YWRYKHPV-TGKFHALGTNEAEAIAIATE 54 M R KN P + K KV Y+ + K LGT+ EA + Sbjct: 1 MRPRSNKNRGLPPRMIKRTRTMKSGKVWVGYYYDGRDAEGRRKEIPLGTDLDEAREKWAK 60 Query: 55 ANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAK 114 + TR T L R++ T K+ +K Sbjct: 61 LERKAVPPTTR-----------------TVGDLLRRFERDVVP-----TKAPKTQKEYSK 98 Query: 115 PVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPP 174 + L + + IAQ D A R A ++L + A+ +G + Sbjct: 99 MIRQLLGAFDEAPVEDITPSTIAQYRDARTAKVR---ANREITLLSFAYNMAREWG-ITS 154 Query: 175 GYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 NP K+ + + ++ E WK +++ A + M LA +TGQR D+ +++ Sbjct: 155 MENPCRGVKKNKEQPRDVYVTDEVWKALYEKAPDD---LRVTMDLAYLTGQRPADVRKLR 211 Query: 235 FSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 +D+ D+L V Q KT K+ I L R + L +V + S LV Sbjct: 212 KNDVSGDYLLVGQNKTSRKLRIRLR-RADGQMTQLGHLVESI--ASDSPALV-------T 261 Query: 295 AERGAQVKANTLTMNFSKARDLA---------RIDWGEGSPATFHEQRSLSERLYKEQGL 345 E+G + L F AR A + E F + R + + Sbjct: 262 NEKGQPMTEKMLRTRFDTARKAAADEAIKAGDQDLAREIMQFQFRDIRPKAASDIESLA- 320 Query: 346 DTQKLLGHKTQQQTDR-YHD 364 D LLGH TQ+ T R Y Sbjct: 321 DASDLLGHTTQEITKRVYRR 340 >UniRef50_B9BDB4 Putative integrase n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BDB4_9BURK Length = 359 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 67/381 (17%), Positives = 132/381 (34%), Gaps = 44/381 (11%) Query: 6 RKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTR 65 RK + L K Y+ ++ G++ LGT+ AEA N Sbjct: 3 RKRKSNELGLPDRVYPKHGAFYYVHRD---GRWERLGTDLAEAKRRGNLYN--------- 50 Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGM 125 T S +LD + + R++ G ++ TY+ + V L+ G Sbjct: 51 ----------DPDSTYGTMSYFLDEFVVHCEKRVQLGYLKPRTYEDYKRDVEPLKVYFGR 100 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 ++V+ + + LD GRP ++ L F G+ NP L K+ Sbjct: 101 MTPASVEPKHVGAYLDLCAENGRPVRGNREKACLSSCFTWLIRTGKGSVKLNPCLGVKRN 160 Query: 186 RRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--- 242 + + + +E++ ++ +A + + L T QR DI ++I Sbjct: 161 KETKRERYVEHDEYRAVWAVA---APQVRGLLDLTYRTLQRPEDIIAWGPANIVQKREPD 217 Query: 243 ------LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 + Q KTG+ + I ++ ++AI L+ A + + Sbjct: 218 GSVRRVIRNDQGKTGAIVDIAVTPEIDAILNYLK---ATGPTPGPGTTWIRKRNGEPYSY 274 Query: 297 RG-AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLG 352 G + + ++AR+ + + ++ ++ G+ Q L G Sbjct: 275 SGLTSMLHRYIAK-VNRARETKGLTPFQSFGP--YDMKAKGATDMWLSGVPLERIQVLCG 331 Query: 353 HKTQQQTDRYHDDRGKGWSKV 373 H + T+ Y R +G + Sbjct: 332 HDSVTTTEIYVKCRWRGTVEP 352 >UniRef50_A3QBL8 Phage integrase family protein n=1 Tax=Shewanella loihica PV-4 RepID=A3QBL8_SHELP Length = 324 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 129/369 (34%), Gaps = 59/369 (15%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M R + +N P +Y ++ Y+ K GK+ L ++ EA Sbjct: 1 MGRRRKSDNHLPPKVY----QRSGSYYFVDKD---GKWIKLASSYPEA------------ 41 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 + I G +T S LDRY LK +YK LR Sbjct: 42 -------MVKYAEIVGDVGNLVTVSDLLDRYLREV-APLK----AEASYKSNLAQSKFLR 89 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 G + + R I Q +D G+ ++L + K A +G + +NP Sbjct: 90 AGLGDIRVDELTPRHIYQYMDVRGKKGK-TQTNREIAMLSHMLKYAIRWGLI--DHNPCR 146 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 + + + + + +E+K D A + M L+TG R DI +++ + + Sbjct: 147 SVMRFKETPRDRYIEDKEYKAFRDFAGPL---IAAYMDFKLLTGLRKSDILKLRRDALKE 203 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 D +HV+ KT KI I S L A +++D+ S YL +G Sbjct: 204 DGIHVLINKTKRKIIISWSDHLRAAVQAIKDL----PRPINSIYLF-------STRKGQP 252 Query: 301 VKANTLT----MNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQ 356 + + KA + + T H+ R+ + + + +LL H Sbjct: 253 YTTDGFSSIWQRKMVKAMEKGILT----ERFTDHDVRAKTGSDAELE--HATRLLAHLDA 306 Query: 357 QQT-DRYHD 364 + T Y Sbjct: 307 KVTQKHYRR 315 >UniRef50_Q2NTS7 Phage integrase n=25 Tax=Enterobacteriaceae RepID=Q2NTS7_SODGM Length = 338 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 104/262 (39%), Gaps = 16/262 (6%) Query: 104 IRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVF 163 + T K + + L G V + I + +D+ + A + L V+ Sbjct: 79 LAAETQKDYKRNSTRLLPVFGKMHPDNVKPQHIRKYMDKRGTKSK-TQANHEKRFLSRVY 137 Query: 164 KEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVT 223 + G NP +Q + + + ++ E++ ++ +A + AM +A + Sbjct: 138 RWGYERGITKG--NPCSGVRQFKEEARDRYITDAEYEALYSVA---PATVRIAMEIAYLC 192 Query: 224 GQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSA 283 R D+ + S + DD + + Q KTG K + RL + L D + + S Sbjct: 193 CARQSDVLSLTKSQLLDDGIFICQGKTGKKQIKAWTERLKKV-IDLADSLPASQG-VNSI 250 Query: 284 YLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGS-PATFHEQRSLSERLYKE 342 Y++H G + + +++KAR A + E + TFH+ ++ + Sbjct: 251 YVLHQ-------PNGNRYTRDGFNSSWAKARAKASVLHPELTFDFTFHDLKAKGISDLEG 303 Query: 343 QGLDTQKLLGHKTQQQTDRYHD 364 + Q + GHK+ QT RY+ Sbjct: 304 SLSEKQAISGHKSIGQTARYNR 325 >UniRef50_A9ANN7 Integrase family protein n=30 Tax=Burkholderia RepID=A9ANN7_BURM1 Length = 368 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 74/401 (18%), Positives = 131/401 (32%), Gaps = 66/401 (16%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M R R + +Y + W + K+H L + RL Sbjct: 1 MIGRRRSPSFLPARVYEKH------GSWWFVD-KNRKWHKLCRVRDGIV--------RLY 45 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 E A A W+ R K T K + L+R Sbjct: 46 ESLAEYTRASDSAAALDNTMPALIDDWM---------RKKLPAYAPKTRANYVKMIGLIR 96 Query: 121 ERAG-MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + G LI V D+A+ LD++ +P + +++L +F A G NPA Sbjct: 97 KEFGPQWLIEDVRPADVARFLDKHF-HDKPSSSNKHKALLSLIFMHAVRRGLC--DGNPA 153 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIA-------DATHRYMGNAMLLALVTGQRLGDISR 232 + + + ++ +E + ++ R + + LA T QR+GD+ Sbjct: 154 REVGAAKERKRDRYITDDELDAVRAAIVAGADYKTSSARSILCLVDLAYQTAQRIGDLLA 213 Query: 233 MKFSDIWDDHLHVIQEKT----GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHF 288 + + ++ D+ + KT G ++ I + LR+ + R R V+A Sbjct: 214 LNWQNVSDEGISFHPSKTVNSSGVRLLI-------EMTPDLRETLDRARGGKVTAIGPVI 266 Query: 289 FRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEG-------------SPATFHEQRSL 335 T G + + +A + AR + + + FH+ R+ Sbjct: 267 CTHT-----GGRFTYIGAYSAWKRACERARSTYEKECAKKGIEPNPLYLTGMHFHDLRAK 321 Query: 336 SERLYKEQ--GLDTQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 + K Q Q L GH T+ T Y R + Sbjct: 322 ALTDLKRQRGAAAAQSLAGHTTESMTAHYTKAREVERVQPV 362 >UniRef50_C3MAV8 DNA integration/recombination/invertion protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAV8_RHISN Length = 429 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 127/328 (38%), Gaps = 29/328 (8%) Query: 29 RYKHPVTGKFHALG----TNEAEAIAIATEANTRLAEQR---TRQILAISDRIATSKGKA 81 RY+H + LG + ++A A +A ++E R T + R A Sbjct: 47 RYRHAGKPRKMTLGGFPAISLSDAREEARKALRMVSEGRDPATEKAEQEPKRPAHMDLMP 106 Query: 82 ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLD 141 ++ R+ A+++ + + K L+ + KL+ V RD+ +LLD Sbjct: 107 ALLDEFVTRHVAVKNRPSYVRESKRIVEKN-------LKPKWKQKLVKTVTKRDVLKLLD 159 Query: 142 EYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWK 200 E + G P MA VR++L F A V +P ++ K P + TR R L+ EE + Sbjct: 160 EIVDRGSPIMANRVRALLSKFFAWAMERDIV--DASPVVSIKAPSEEKTRDRILTDEEIR 217 Query: 201 KIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW---DDHLHVI---QEKTGSKI 254 ++ A+ G + L L+T QR ++S + ++ ++ L VI + K + Sbjct: 218 FLWLAAEKLAYPFGPVVKLLLLTAQRRTEVSDALWDELELEGNNQLWVISVDRAKNKKEH 277 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 +PL+ I L + D + + ++ K + AR Sbjct: 278 FVPLTASALEIIEGLPK-IKPAEDEKAKPIYLFTTTGKTPVSGFSKAKTQLDGEMLAIAR 336 Query: 315 DLA-----RIDWGEGSPATFHEQRSLSE 337 A + P T+H+ R + Sbjct: 337 KEAEERGEDPEGISIEPWTYHDLRRTAA 364 >UniRef50_B5YSQ6 Site-specific recombinase, phage integrase family n=58 Tax=root RepID=B5YSQ6_ECO5E Length = 359 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 70/365 (19%), Positives = 132/365 (36%), Gaps = 51/365 (13%) Query: 3 ARPRKN---NVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 R RKN P +YP Y +K P + + L A E Sbjct: 2 GRRRKNPEHEKLPPKVYP-------NKYSVWK-PTSRESVTL---------TAIEDGLAA 44 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 ++ + + DR A+T +++ ++ T K + L Sbjct: 45 LWKKYEETVNHRDR-------AMTFGRLWEKFL----ASAYYSELSPRTQKDYLQHQKKL 93 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 G L +V I + +D+ + A +S + V+ G V NP Sbjct: 94 LAVFGKVLADSVKPEHIRRYMDKRGEQSK-TQANHEKSSMSRVYSWGYERGYVK--ANPC 150 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 + + K + ++ +E++ + +A + AM +A + R+ D+ +K+ I Sbjct: 151 AGVSKFKAKNRERYVTDKEYQAVLSVA---PLPVFIAMEIAYLCAARVSDVLSLKWEQIG 207 Query: 240 DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 +D + + Q KTG K ++ A + L+ + + + SAY++ +G Sbjct: 208 NDGIFIQQGKTGKK-------QIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKG- 259 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQT 359 + +AR+ A G + TFH+ ++ Y+ D Q GHKT+ Q Sbjct: 260 ------FNEMWVEARNHAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQV 313 Query: 360 DRYHD 364 Y Sbjct: 314 LIYDR 318 >UniRef50_A8ZYY4 Integrase family protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYY4_DESOH Length = 409 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 135/373 (36%), Gaps = 38/373 (10%) Query: 24 NKVYWRYKHPVTGK--FHALGTNE-----AEAIAIATEANTRLAEQRTRQILAISDRIAT 76 Y+ ++ + GK LG A+A E Q LA I Sbjct: 27 RDQYFTIRYKLAGKDREEGLGWASENWTAAKAYDRLKELKENRKTGEGPQTLAEKRAIED 86 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDI--------RLNTYKQKAKPVSL-LRERAGMKL 127 + A + L + + R + + TY + + L E G Sbjct: 87 KRKDADKQARQLAEKENVTFGRFMAETYLPQCKRDKKPTTYAMEEALYRVHLAETIGNLP 146 Query: 128 ISAVDVRDIAQLLDEYIAAGRP-RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 + + ++ + R Q V VF A+ G V G NP A K P+ Sbjct: 147 FGKIAAFHVERVKKAMADKKKAGRTIQYALQVTRQVFNMARKRG-VYTGENPTSAVKWPK 205 Query: 187 RKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHL 243 + R LS++E +K+FD A + + LL+L +G R G+I+++ +S + L Sbjct: 206 LDNMKMRYLSIDEAEKLFDALAAKSHNLHDMALLSLHSGLRFGEIAKLTWSCVNWKAGTL 265 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 ++ KTGS+ A L+ R A+ + R+ L+ RS G+ +A Sbjct: 266 AILDAKTGSRTAY-LTTRAKAM--------LKNREEGAPNELIFQKRSGLD---GSIARA 313 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERLYKEQGLD---TQKLLGHKTQQQT 359 + K L + TFH R S + LY+ D TQK LGH T T Sbjct: 314 SKTFSRVVKELGLNQGITDRKQKVTFHTLRHSYATHLYEST-HDLYLTQKSLGHTTSTMT 372 Query: 360 DRYHDDRGKGWSK 372 RY + Sbjct: 373 QRYAKMTENRLRE 385 >UniRef50_C5A9R6 Phage integrase:Phage integrase, N-terminal SAM-like protein n=4 Tax=Burkholderia RepID=C5A9R6_BURGB Length = 342 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 74/373 (19%), Positives = 136/373 (36%), Gaps = 47/373 (12%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIATEANTR 58 MA + + +P + + Y+ V G+ LGT+ A+ Sbjct: 1 MAGKAQTPGA-IPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQR------W 53 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLN---TYKQKAKP 115 + R + + R A+ + + ++ T + Sbjct: 54 AELEGARAPSSETTRHT----------------FAMLEQAYRIRELPQKSAATQRMYDLF 97 Query: 116 VSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG 175 +S L G + + + D+A + A ++VL V + +G + Sbjct: 98 LSRLAGVIGDRELDTLTPADVATIWRATAEKRGVVTANRTKAVLSLVLNCGRLWGMM-TI 156 Query: 176 YNPALATKQPRRKITRQRLSLEE-WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 NP + + + L +E + ++ +AD + NAM LA + QR D+ R++ Sbjct: 157 ANPCAGVRGKKETGRQAILIDDELYAAVYTVADQP---LRNAMDLADLCAQRPSDVLRVQ 213 Query: 235 FSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 S+I +L +KTG+ + + ++ L A+ L D VS YL+ + Sbjct: 214 RSNIVRGNLIFRTQKTGAFVTVQITGDLAALIERLLAWRGSKVD--VSPYLL-------R 264 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLS-ERLYKEQGLDT-QKLLG 352 E G + L F KAR+ A ID + F + R+ ++GL+ Q+L G Sbjct: 265 DEEGYPLTKGKLRSRFDKARERAGID---KAKFQFRDLRARGVTHKTIDEGLEAGQRLAG 321 Query: 353 HKTQQQTDRYHDD 365 H T RY Sbjct: 322 HSGPGMTARYVRG 334 >UniRef50_Q0HXZ0 Phage integrase family protein n=6 Tax=Gammaproteobacteria RepID=Q0HXZ0_SHESR Length = 338 Score = 121 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 110/306 (35%), Gaps = 22/306 (7%) Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 A ++ + T D Y ++ + + + + +++ Sbjct: 41 ASSTRAEVWTAYEAAIEKSLTKYTFKRMADEY----QASATFKELAPRSQRDRERELAMC 96 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + G + I + +D A S VF G NPA Sbjct: 97 NKVFGEMEPDTIKPHHIRRYMD-IRGNTSRTQANHELSACSVVFGWGYERGHCKE--NPA 153 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 K+ + K + ++ E+ + + + + A ++ + R D+ +K+S + Sbjct: 154 KGVKKFKNKSRDRYITDYEFNALLECCEQR---LKIACEISYLCAARQADVLSLKWSQVM 210 Query: 240 DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 D+ + + Q KTG K S RL+ + + + R S ++++ G Sbjct: 211 DEGIFIQQGKTGKKQIKAWSPRLHELINEAKTL----RKGIASVFVIN-------KTGGG 259 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSP-ATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQ 358 ++ A+ L ++ +A D + + + TFH+ ++ ++ D Q+ GHKT Q Sbjct: 260 RLTADGLRSSWRRAIDKLALQYPDIERTFTFHDIKAKGISDFEGNIHDKQQFSGHKTVGQ 319 Query: 359 TDRYHD 364 + Y Sbjct: 320 VNVYDR 325 >UniRef50_Q9PD24 Phage-related protein n=2 Tax=Xylella fastidiosa RepID=Q9PD24_XYLFA Length = 284 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 100/281 (35%), Gaps = 24/281 (8%) Query: 83 TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKL-----ISAVDVRDIA 137 T +RY+A NT + ++ L + I V++R Sbjct: 2 TFRHVAERYRAEVIPTKAH-----NTQRMHHIYLNYLLQFFDDPPAPFESIKPVNIRQYL 56 Query: 138 QLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLE 197 + A ++ ++ A+ G V NP ++ + + + Sbjct: 57 DWRPFKV------SANREVALFSHLWNWARSKG-VTDLPNPCGGIRRNKERGRDVYIDDT 109 Query: 198 EWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIP 257 ++ ++ AD + +AM LA +TGQR+ D+ M I + L + Q KTG K+AI Sbjct: 110 TYRAVYHAADQ---TLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIA 166 Query: 258 LSLRLNAINWSLRD----VVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKA 313 ++ L + + D + R V A + R+ + A + + Sbjct: 167 ITGELAVLIKRIFDHKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQF 226 Query: 314 RDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHK 354 RD + +GEG P + R+ Q+ GH Sbjct: 227 RDDRQGRFGEGHPPSPSAIRACVGDDDGALCTQAQRGEGHA 267 >UniRef50_A6FSU1 Phage integrase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FSU1_9RHOB Length = 325 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 104/283 (36%), Gaps = 35/283 (12%) Query: 83 TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDE 142 T + ++ Y D K NT K + R++ G+ +++ R + + D Sbjct: 57 TINKLIEHYMRSPDWAKK----AHNTRKSYERSFLYFRDKIGLVDPASIRRRHVNDMRDA 112 Query: 143 YIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKI 202 A P A + L + A G V NPA KQ TR+ ++ + Sbjct: 113 LSA--TPTTANRRVAALSVLMNHAIDIGWVEH-VNPARGVKQLDGTKTREAWPVDMVEAF 169 Query: 203 FDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRL 262 A + L + TGQR+GD+ M++ I D+ + V Q KT +++ IP + R Sbjct: 170 RTAATGQTLLL---FELLIGTGQRIGDVLNMQWGQIEDNGIVVRQSKTKAEVWIPFTRR- 225 Query: 263 NAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWG 322 L D++ + A+ Y+++ G +V NT R Sbjct: 226 ------LLDMLNKTPRNAL--YIINHE--------GHRVAYNTAWKWVMDVRKQIGATDY 269 Query: 323 EGSPATFHEQRSLSERLYKEQGLDTQKLL---GHKTQQQTDRY 362 + H R + G+ ++++ GH + Y Sbjct: 270 D-----IHGLRHTAASELAALGMTDEEIMSITGHTSAAMVRLY 307 >UniRef50_B9TI67 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TI67_RICCO Length = 384 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 105/295 (35%), Gaps = 38/295 (12%) Query: 89 DRYQAIQDDRLKSGDIR--LNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAA 146 DR QAI L+ + T V + + V D + L + Sbjct: 98 DRMQAICSQWLQEVSTKHAKKTQANDIYQVRTISQAFAEFRAEDVRTPDAVEFLKAFAK- 156 Query: 147 GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIA 206 PR RS+L ++ + ++ G G NP A + K + ++ E +++ A Sbjct: 157 -MPRTYNAYRSMLRELMRFSEEKGYRESGANPVDAIRTASVKARNRYITDSELRRVKVAA 215 Query: 207 -----------DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEK----TG 251 + R + + +A +TGQR+GD+ + ++++ + + K TG Sbjct: 216 LRSGGQRAKQINPAGRMICAILDMAYLTGQRIGDVLALPWANVGREGVLFRPSKVEDSTG 275 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 +++ I + RL + +R +Y + G L + Sbjct: 276 AQVLIEWTPRLRELVARIRAEKNVGLNYVFTG------------PDGGAYSYEALKSAWR 323 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKE-QGLD-TQKLLGHKTQQQTDRYHD 364 +A A + A H+ R+ + G+ Q++ H TQ QT Y Sbjct: 324 RALTRAGVK-----DAHIHDLRAKALTDVDRLHGVTAAQRMGAHSTQSQTADYVR 373 >UniRef50_Q3A6E0 Site-specific recombinase/integrase n=3 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A6E0_PELCD Length = 482 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 136/369 (36%), Gaps = 32/369 (8%) Query: 8 NNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + P L+ + + NK + +RY+ K A+G + +A + + Sbjct: 119 YSTGEPGLHICVNMRGNKRWLFRYRLYGRKKVVAIGPYPSIEPPLAKQMANEMQRNLALG 178 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMK 126 +S R + K T + +Y + + K + + + G Sbjct: 179 ERVVSPRAQQKQQK--TFGEFARKYLEHAK------QTKKSWKDDYNKLTNQIIPKWGEV 230 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 ++ + ++I L++ A A +VL ++ A +GE+ P NP + R Sbjct: 231 PLTCLTPKEIQGYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPWKNPMPGVSKFR 290 Query: 187 RKITRQR-LSLEEWKKIFDIADATH-RYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLH 244 R R LS+EE K+ + + A+ L L TG R G++ + K+ D+ + Sbjct: 291 DNPGRTRYLSMEECKRFLAALEEAPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEGRT 350 Query: 245 --VIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 + + K G + L+ A L+D + YL F +S+ + Sbjct: 351 MLLPETKNGKSRVVHLNSLSLAEIEKLKDF-----RNPSNPYL---FPGSSEDKP----- 397 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL---LGHKTQQQT 359 T+ F A LA + +G+ H R L G + + LGH + + T Sbjct: 398 LGTVRKTFEHALKLAGL---QGTDVVIHTLRHTHASLLANLGESLETIKVSLGHSSVKMT 454 Query: 360 DRYHDDRGK 368 +RY G Sbjct: 455 ERYAHISGS 463 >UniRef50_C5SIT1 Integrase family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIT1_9CAUL Length = 356 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 71/367 (19%), Positives = 131/367 (35%), Gaps = 54/367 (14%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 Y+ + ++ P + G ++ A +A +E + RI S Sbjct: 13 RYTDRHGNTRHYFRRPGHKQVALPGKPGSKEFMAAYQAALSGSEGKP--------RIGAS 64 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE-------RAGMKLISA 130 K K + L Y R +++ + K + RE +AG L+ Sbjct: 65 KEKPGSFGALLSVYYDSAKFR---NELKPQSQKAYRILLEQFRELEVTPGVKAGDCLVKD 121 Query: 131 VDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT 190 + +L+ + +A RP A+ + L VFK A + NPA + P+ K Sbjct: 122 FRPAHLNKLVIDGLA-DRPGQAKNMIKCLRGVFKCAIRNEMI--DSNPAREVETPKAKSK 178 Query: 191 R-----QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV 245 +E + K + A+ L L TGQR D++RM + + +HV Sbjct: 179 DGIPAWSDADIEAFCKHWPSGTKQ----RLALALLLYTGQRRSDVARMGRQHVREGRIHV 234 Query: 246 IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANT 305 Q KT +++AI + L L V + ++ + G Sbjct: 235 RQMKTDARLAIRIHSELQ---KELDLVPPGQMTFMLTEW-------------GKPFSLAG 278 Query: 306 LTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQK---LLGHKTQQQTDRY 362 ++ F K + A + + H R + R+ E G ++ +LGH++ + +RY Sbjct: 279 FSIWFKKQAEDAGV-----QDRSAHGLRKAAGRMLAEAGCTAKQIMAILGHQSMTEAERY 333 Query: 363 HDDRGKG 369 + Sbjct: 334 TRTADQE 340 >UniRef50_A4EPH1 Integrase n=2 Tax=Rhodobacteraceae RepID=A4EPH1_9RHOB Length = 332 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 103/282 (36%), Gaps = 40/282 (14%) Query: 89 DRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGR 148 ++ + + T +K + L G K + + I + + R Sbjct: 59 EKLIQSYKRSPRWEGLAPRTKADYSKVLEYLAGTIGQKDPTKMRRSTIIEA--QMANKHR 116 Query: 149 PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADA 208 R A + +L +F+ A NPA ++ + + E K A A Sbjct: 117 ARFANYIPHMLSILFEHAVDLDW--QRDNPAKGIEKIK--------TGEGHKPWPKPAVA 166 Query: 209 THRY-----MGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLN 263 T R A LAL TGQR D++RMK+SDI DD + V Q KTG ++ IP + L Sbjct: 167 TFRKNVRGLERLAFELALGTGQRASDLTRMKWSDIEDDGIWVTQGKTGVRLWIPFTDSLR 226 Query: 264 AINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGE 323 AI L + + + +S G Q+ + + F KAR + Sbjct: 227 AI---LDETPRKSLHWILSDDF------------GRQLGYDYIQKKFLKARKELGL---- 267 Query: 324 GSPATFHEQRSLSERLYKEQGLDTQKLL---GHKTQQQTDRY 362 FH R + E G ++ GHK+ +Y Sbjct: 268 -EGYGFHGLRYSAAGELAEAGCTDHQIAAITGHKSLSMIQKY 308 >UniRef50_B0VK72 Integrase n=1 Tax=Azospirillum phage Cd RepID=B0VK72_9CAUD Length = 295 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 93/282 (32%), Gaps = 40/282 (14%) Query: 93 AIQDDRLKSG--DIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPR 150 I RL + T K L + S + R I ++ D+ A P Sbjct: 14 VIGRYRLSPEYQRLAPATKKIYEAAFDRL-HDYAQEEFSGLRRRHIMRVRDDL--AHSPA 70 Query: 151 MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI----- 205 A V + + V + A + + RL EW++ D Sbjct: 71 TANQVITAIGAVCRFALDREMIETDPS-----------HRVPRLKTGEWRRWTDAELDKF 119 Query: 206 ADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAI 265 + + + ++AL TGQR D+ R + DI D ++V+Q+KTG+ + IPL L Sbjct: 120 YQSAYEALRRVFVMALFTGQRRADLCRATWGDIQDGGINVVQQKTGAHLWIPLHPTLE-- 177 Query: 266 NWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGS 325 R S + + L+ F D ++ Sbjct: 178 ---------RHLAIWKSDATPLPSVTILTSTDRTPWPPQVLSCAFRNEADKLGLN----- 223 Query: 326 PATFHEQRSLSERLYKEQGLDTQKLL---GHKTQQQTDRYHD 364 H R + E G ++++ GH T + +RY Sbjct: 224 GCNLHGLRKTAAAKLAEAGCSARQIMAITGHSTMNEVERYTR 265 >UniRef50_C8Q741 Integrase n=1 Tax=Pantoea sp. At-9b RepID=C8Q741_9ENTR Length = 102 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 1/103 (0%) Query: 217 MLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 M + L+TGQR D + MKFSDI D L + Q K KI +P+SLRL AI L +V+ +C Sbjct: 1 MNIKLLTGQRRLDTTGMKFSDIADGRLFITQSKISHKIVLPVSLRLEAIGLDLNEVIEQC 60 Query: 277 RDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARI 319 R S L++ F G V + +T F++ARDL+ I Sbjct: 61 RISNPSDNLIYSFVKFGGCSAG-PVMPDAMTGEFAEARDLSGI 102 >UniRef50_Q482E5 Site-specific recombinase, phage integrase family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q482E5_COLP3 Length = 334 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 16/260 (6%) Query: 105 RLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFK 164 T K L G I+ V+ + + +D+ A +S L +F Sbjct: 79 APRTQKDYLGYKKDLLIAFGKMDINKVEPKHVRMFMDKKAVKSGISQANRHKSALQSIFS 138 Query: 165 EAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTG 224 A G++ NP + K+ K + ++ E++ + + A + A ++ + Sbjct: 139 WAYERGKIK--VNPCVGVKKFTEKARDRYVTDVEYQALLNHA---CPVIYAAAEISYLCM 193 Query: 225 QRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAY 284 R GD+ R++ + D +++ Q KTG K S RL V S Y Sbjct: 194 ARRGDVERLRKEQLIADGIYIKQGKTGKKQIKEWSPRLKKAISHANKV----NPSISSMY 249 Query: 285 LVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG 344 ++H F + G + ++ +AR TFH+ ++ ++ Sbjct: 250 VIHQFNGSGYGTNG--FRDRWVS-TMERARKSTGYLMD----FTFHDLKAKGISDFEGNL 302 Query: 345 LDTQKLLGHKTQQQTDRYHD 364 + + GH T +QT Y Sbjct: 303 EEKRNAAGHTTIKQTADYDR 322 >UniRef50_C5V3D2 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3D2_9PROT Length = 357 Score = 111 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 127/375 (33%), Gaps = 57/375 (15%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYW----RYKHPVTGKFHALGTNEAEAIAIATEANTR 58 +PRK +P +VY+ Y K+ LG A+ Sbjct: 31 GKPRKTRKDLP----------QRVYFKHCAYYFVNTDNKWIPLGKEYCIAMQK------- 73 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 Q + R+++ +D Y + L + T +++ Sbjct: 74 --WAAMLQPVIGKQRLSSV----------MDTY---IKEELPLR--KPLTQTDYLASLAI 116 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 LR G V+ ++I + P + +VL +V +A G + NP Sbjct: 117 LRPVFGDMFPEDVEPKNIYAFM---RMRNAPVRSNRDVAVLSNVMNQAIKMGLI--NTNP 171 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 ++ + + E I ++ + L L+TG R GD+ ++ + Sbjct: 172 CKQVRRNVENPRTREVLDSE---IVAFLPHCPEWLQAYIRLKLLTGLRQGDMLSIRLDQL 228 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 +D L V K G K+ S L ++ + + R S +L++ R G Sbjct: 229 REDGLFVQTWKRGKKLLFSWSDNLR----TIVETIKSLRHRVTSLHLINSDRD------G 278 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQ 358 ++ + +++A A ++ R+ +E G + K+LGH + Sbjct: 279 TKLTTSGFKSAWARAMKRAIEAGSLTETFAENDLRAKVATEARELGQNATKILGHSSDAV 338 Query: 359 TDRYHDDRGKGWSKV 373 T R H +RG + Sbjct: 339 TKR-HYERGTSKVEP 352 >UniRef50_UPI00016AAE5A phage integrase family protein n=2 Tax=Burkholderia pseudomallei RepID=UPI00016AAE5A Length = 153 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 18/158 (11%) Query: 212 YMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRD 271 + +AM +A +TGQR D+ ++K SDI D +LH++Q KTG+ + I AI LR Sbjct: 2 TIQDAMDIAYLTGQRPADVRKIKRSDIRDGNLHIVQNKTGAHLRI-------AIEGELRR 54 Query: 272 VVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHE 331 V+ R + ++ Q E G + + + F KAR++A + + F + Sbjct: 55 VIERINGRPRTVTGLYLI----QDENGRALTQDAMRSRFDKAREIAGVSFQ------FRD 104 Query: 332 QRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKG 369 R+ + + QKLLGH+++ T+ Y R Sbjct: 105 IRAKAASDTGDLSHS-QKLLGHRSRDMTEHYVRKRIGE 141 >UniRef50_A1B6Q9 Phage integrase family protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B6Q9_PARDP Length = 393 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 103/293 (35%), Gaps = 35/293 (11%) Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE-RAGMKLISAVDVRDI 136 + + T + R+ + + +TY + + + L R G I + D+ Sbjct: 91 RKASPTIKEFSKRFLSDHVA----LHCKASTYGEYERSIDLFINPRFGSHRIIDITRADV 146 Query: 137 AQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL 196 L P A VL +F A +G G NP K+ R + + L+ Sbjct: 147 VGLHQSM--RHIPYQANRTLGVLSVMFTVAHAWGVRTDGVNPCWKVKRYREEKRERYLTP 204 Query: 197 EEWKKIFDI--ADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQEKTGS 252 +E ++ + N + L L+TG RL +I +K+ + + L + KTG+ Sbjct: 205 DELARLGKVLDCATEEPEAANCIRLLLLTGCRLSEIQTLKWRYVDYRNGLLRLPDSKTGA 264 Query: 253 KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSK 312 K+ I + V+ + Y++ + G + + + + Sbjct: 265 KLV--------PIGKAAIKVLKTIPKIDGNPYVI------TGRMEGQHLTD--MQKPWRR 308 Query: 313 ARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTDRY 362 R A +D H+ R + G D +LLGH Q T RY Sbjct: 309 LRKRAGLDDLR-----IHDLRHSFASDALQLGQDLTMIGRLLGHTQVQTTARY 356 >UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1AUY6_PELPD Length = 402 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 65/361 (18%), Positives = 125/361 (34%), Gaps = 31/361 (8%) Query: 22 KVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 K + ++++++ G+ +LG A ++ A R ++R Sbjct: 50 KNGRRFFQHRYRYLGRKMCLSLGEFPAVSVQDARSRVAEHKALLARDKDPAAER--GKVR 107 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIAQ 138 +T + ++ L T+ + L G + A+ RD+A Sbjct: 108 ADLTFEEFSTQH------YLPHAKAHKQTWDDDKNQIERRLNPILGKLRLQAITPRDVAM 161 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLE 197 + + A + + L + A +G + NPA ++ + R+R LS E Sbjct: 162 VHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEK--NPAGGQEKFKEGPLRERYLSKE 219 Query: 198 EWKKIFDIADATHRYMGN-AMLLALVTGQRLGDISRMKFSDIW--DDHLHVIQEKTGSKI 254 E K + + A+ + L TG R +I +++ ++ ++ + + + K G Sbjct: 220 ELPKFLKALEDQDDLLSVAALRMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSR 279 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 + L+ R + L+ + S Y+ + T + L F KA Sbjct: 280 TVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKGYIYD------LRKPFEKAC 333 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWS 371 A ID H+ R + G D Q+LLGH+ T RY Sbjct: 334 LNAGIDNFR-----IHDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLK 388 Query: 372 K 372 K Sbjct: 389 K 389 >UniRef50_B7X1U3 Putative uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X1U3_COMTE Length = 352 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 71/369 (19%), Positives = 118/369 (31%), Gaps = 58/369 (15%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 S K N Y+R++ G++ +GT+ A A N + Sbjct: 7 RLSFKHNAFYYRHRD---GRWERMGTDVRAAKERAAIYN-------------------SP 44 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIA 137 TT+ WLD++ R+ D+ T K L+ G L ++ + Sbjct: 45 ADNYGTTAYWLDQFLVDCQQRVSIKDLAPRTLSDYTKDSEPLKVFFGAMLPEHIEPHHVQ 104 Query: 138 QLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY-NPA---LATKQPRRKITRQR 193 LD AA R A ++ L + P NP T++ K + Sbjct: 105 AYLDAGSAAERGVRANREKACLSSCLSWLIRTNKCPGLKINPCMQKSGTRENSEKKRDRY 164 Query: 194 LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLG-DISRMKFS------DIWDDHLHVI 246 ++ +E+++++ +A + M L T QR DI + + Sbjct: 165 VTHQEYQEVYALA---WPQVRVLMELTYRTLQRPESDIIYWTPKVLARDPHTGNRIITFE 221 Query: 247 QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVS--AYLVHFFRSTSQAERGAQVKAN 304 Q KTG+++ I A+ L ++ R LVH T G + Sbjct: 222 QGKTGTRLKI-------AMTEGLEKLINRAVGTNPHMDQPLVHTRAGTGYTYGGIN---S 271 Query: 305 TLTMNFSKARDLARIDWGEGSPA----TFHEQRSLSERLYKEQGL---DTQKLLGHKTQQ 357 L R I + P F + + G Q L GH + Sbjct: 272 MLGKA---IRTANEIRATKNIPPMASFGFRDLKGKGATDMWLAGTPIEQIQLLCGHSDKA 328 Query: 358 QTDRYHDDR 366 T+RY R Sbjct: 329 TTERYIKAR 337 >UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KC37_9RHOB Length = 385 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 113/309 (36%), Gaps = 38/309 (12%) Query: 55 ANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAK 114 AN RL + + +SD + + K LD + + + ++ + Sbjct: 70 ANARL--KAPNVLADMSDGLTQGQRKTDLFKVVLDEWLKKDQAK------NKSVHQVRVA 121 Query: 115 PVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPP 174 G ++++ RD+ +L+D+ + AG P A V + F + + Sbjct: 122 MYKHALPAFGPMPVASITKRDVNRLIDKIVDAGSPVAANRVLAFTKRFFSWCKERDILEL 181 Query: 175 GYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRM 233 +PA A + P ++ TR R L+LEE K + D G L L+TG RL ++S+ Sbjct: 182 --SPAEAIRPPSKEKTRDRVLTLEEIKGFWAACDQMGYPWGPIFQLLLLTGARLREVSQA 239 Query: 234 KFS--DIWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 + I D L++ + K G I LS + I +L V + D + Sbjct: 240 SWGEVSIADGTLNLPARRTKNGRAHQIQLSDQAINIIQALPKVEGQ--DLIFTTNGTTAV 297 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--- 346 S+ ++ + + F R RS + + G+ Sbjct: 298 SGFSKVKKRLDIISGVADWRFHDLR------------------RSFATHSTERLGISPVV 339 Query: 347 TQKLLGHKT 355 K+L H T Sbjct: 340 ADKILNHVT 348 >UniRef50_C1SPM2 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM2_9BACT Length = 397 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 143/369 (38%), Gaps = 49/369 (13%) Query: 9 NVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQI 67 + + + + K Y RY++ G + + A+ A ++ R Sbjct: 29 DTELKGFALRVTGRPTKSYVIRYRNEE-------GRQKVMTLFRASNITADEARRKARTK 81 Query: 68 LAISD------RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 L + + K KA+ S + + Y R + + T + + + + Sbjct: 82 LTEAQGGTDILKEKQEKRKAMLFSEFAEIYLEH-HARPNNSAGTVKTNESYLERL--ILP 138 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 G + + ++ D A+L + I P A V ++L +F A+ + +P NP + Sbjct: 139 AFGNRPLKSITPEDTAKLHHK-IGKSTPVQANRVHALLRKMFTLAETWRYIPQNTNPCVH 197 Query: 182 TKQPRRKITRQRLSLEEWKK---IFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 T++ + ++ L+ +E K+ + + + + A+ L + TG R +I +K+ +I Sbjct: 198 TQKYKETPVQRFLTPDETKRLEDVLEKYEEKYYSAVLALRLLMYTGCRKEEILTLKWENI 257 Query: 239 WD--DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 + + LH+ + KTG K +P+S + D +AY V+ + + E Sbjct: 258 KNELNLLHIPKSKTGEK-NVPVSHEV--------------LDMLENAYKVNEYVCFGKFE 302 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGH 353 + + + + R A ++ H+ R G++ + KLLGH Sbjct: 303 NSRLIGLQKI---WERLRKEAGLEDVR-----IHDLRHSFASTAISGGINIEFISKLLGH 354 Query: 354 KTQQQTDRY 362 K T+ Y Sbjct: 355 KRITTTEYY 363 >UniRef50_A5CFJ0 Phage-related integrase n=19 Tax=Orientia tsutsugamushi RepID=A5CFJ0_ORITB Length = 442 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 54/291 (18%), Positives = 116/291 (39%), Gaps = 38/291 (13%) Query: 91 YQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPR 150 ++ + + + ++K+ ++ V + K IS + DI ++ DE A Sbjct: 121 FRQVHEKYTEYSSHHHRSWKRTSERVKIYAAFLYNKKISEITKEDIQKIFDEITARKHYV 180 Query: 151 MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIA---- 206 A + L +F +A +G + NP K+ +++ + ++ EE +++ + Sbjct: 181 TANNILMNLSPIFNKAIEWGLI--DKNPVHGIKRHKQESRSRYVTNEEMERLMKVLVEKE 238 Query: 207 ------DATHRYMGNAMLL--ALVTGQRLGDISRMKFSDIW-DDHLH---VIQEKTGSKI 254 + + + L AL T R G+I M++ +I + + + K G ++ Sbjct: 239 NSQLTEEQKQSKISETLFLFIALFTAARSGNILAMRWDEISLSEKIWCIPKTKSKNGKQL 298 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 I L+ +L A V+ + + S +++ + S+ + ++T+ ++K R Sbjct: 299 YIGLADKLIA-------VLQNRKLCSKSEWILPSVKDNSKH-----ISSSTIHRAWAKIR 346 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKEQG--LDT-QKLLGHKTQQQTDRY 362 A I T H+ R G +DT ++LGH T Y Sbjct: 347 KKAGI-----PNVTIHDLRRTFATWMINNGETVDTISQILGHSNTNTTKIY 392 >UniRef50_D0CWC5 Phage integrase family protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CWC5_9RHOB Length = 417 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 111/290 (38%), Gaps = 24/290 (8%) Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAV 131 RI + T L++Y +L+SG + + + R G I V Sbjct: 96 RIEAQLSERDKVKTLLEQYAKRHLSKLRSGS-------EVKRRLETEFLPRYGDHDIHEV 148 Query: 132 DVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 RDI +LL++ +GR A +R L F +P +P K ++ +R Sbjct: 149 TKRDILELLEKIADSGRITTANRMRLYLSGFFNWCLERDAIP--ISPVQGVKPVAKEKSR 206 Query: 192 QR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD--HLHVIQE 248 R L+ +E + + + A L+TGQRL ++ M ++ D HL + Sbjct: 207 DRVLNDDEIRWFWKACERAGYPWRQAGQTLLLTGQRLNEVLGMTDDELHGDAWHLSAQRT 266 Query: 249 KTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTM 308 K G + +PLS + RDV++ + S + F + G N L+ Sbjct: 267 KNGREHLVPLS-------QAARDVLS-SVERIESPSRLLFTTTGRTPICGHFKARNRLSR 318 Query: 309 NFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKT 355 ++ + + E TFH+ R + G+ T+ +L H + Sbjct: 319 FMAEIAEAETGEAIEIPHWTFHDLRRTAATGMARLGIPVRVTEAVLNHVS 368 >UniRef50_A5KPC6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A5KPC6_9FIRM Length = 400 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 63/347 (18%), Positives = 131/347 (37%), Gaps = 55/347 (15%) Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNT-YKQKAKPVSLLR 120 ++ R+ + + G++IT + W + + + +++ T YK + + ++ Sbjct: 46 RKLREAVYEDEHGLNGNGESITLNAWYVTWTELYKKK----TVKMTTIYKNHSYYNARVK 101 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAGRPR-MAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 G + + + + ++E I +G +R +L D+F +A + NP Sbjct: 102 NSIGKMYLQDIKTYHVQKFINELIDSGLAHGTVSNIRFMLSDMFDKAVLSEYIRK--NPC 159 Query: 180 LATK-QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 +A + P+ K R+ L+ EE KK F A + N + A+ TG R+G++ +K+ D Sbjct: 160 IAVEMPPKVKKERRVLTREEQKKFFTFASSYIH--INVLKFAVTTGCRIGEVLGLKWEDC 217 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 + + KT + + ++ ++ R ++ + ++ + Sbjct: 218 DFEKREITINKTIHYSKASSPVEGSKFFYTTAKTISSNRVIPMTDEVYEILQNQKIKQTE 277 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPA------------------------------- 327 ++ ++ + ++L +GSP Sbjct: 278 QKMWKRSIWKQHKEFQNLV-FTCSDGSPVYYYNVNSAIKDYVAKINVIEIELAKEEKREP 336 Query: 328 ------TFHEQR-SLSERLYKEQGLD---TQKLLGHKTQQQ-TDRYH 363 T H R + + R Y E G+D QKLLGH T TD Y Sbjct: 337 KIFELFTCHTLRHTYATRCY-ENGVDQQVVQKLLGHSTLAMTTDLYT 382 >UniRef50_Q48JR5 Putative uncharacterized protein n=4 Tax=Pseudomonas RepID=Q48JR5_PSE14 Length = 311 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 9/117 (7%) Query: 265 INWSLRDVVARCRDYAVSAYLVHFF------RSTSQAERGAQVKANTLTMNFSKARDLAR 318 + L+ V++RCRD S YLVH + + +++ LT F AR+ A Sbjct: 183 VTPELQAVISRCRDNVASPYLVHRRPERLKQKQAQTKDHWTKIEERYLTRAFKAAREDAG 242 Query: 319 I--DWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGK-GWSK 372 DW + FHE R+LS LYK+ G D QK+ GH ++ T Y D + WS+ Sbjct: 243 CYADWSDEEMPGFHEVRALSLHLYKKAGKDGQKIAGHASEDMTKNYQKDHAEIVWSE 299 >UniRef50_A3D8Y2 Phage integrase family protein n=4 Tax=Shewanella RepID=A3D8Y2_SHEB5 Length = 376 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 125/371 (33%), Gaps = 45/371 (12%) Query: 8 NNVSVPNLYPLYSRKVNKVYW---RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRT 64 + P + + Y+ +Y+ + H +G + A + Sbjct: 24 YDKYFPAFFMRAYPSGIRCYYVRFQYQGLR--QLHVIGNANDITLDDAR-------LEAR 74 Query: 65 RQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAG 124 + I A+ + ++T + + + K + LN+ + + ++ + G Sbjct: 75 KHIDALRYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTL-LNSQRGFTRHIAPV---LG 130 Query: 125 MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 ++A+ + I Q D A MA + +L + ++A+ Y P NP K+ Sbjct: 131 DVPLAALTRQHIEQWFDGMHA--SKGMANRLLPLLSVMMQQAEVYEYRPAQSNPCKGFKR 188 Query: 185 PRRKITRQRLSLEEWKKIFDIA---DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 + + + LS EE K+++ + + L ++TG R ++ +K++D Sbjct: 189 YKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSVKWADYRQG 248 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 H ++ KTG+K ++ +S + Sbjct: 249 HWYLPDSKTGAKTVF----------------LSSFARELLSDWPQVSEHLFWHQSPSQPF 292 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQ 358 L + R+ ++ H+ R + + ++ +LLGH + Sbjct: 293 TPARLDRFWRPFRETIHLNDVR-----IHDLRHTYASIAVKHNINILTIGRLLGHALPET 347 Query: 359 TDRYHDDRGKG 369 T +Y + Sbjct: 348 TLKYTHLAKRD 358 >UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWI5_9AQUI Length = 369 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 70/362 (19%), Positives = 134/362 (37%), Gaps = 58/362 (16%) Query: 21 RKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGK 80 +K + Y K+ GT + EA + ++ ++ A S + Sbjct: 8 KKGRRYYVVIPIGHKRKWFPAGTTKREAEK--------VLAEKLAELNAGSSVLPPEVRF 59 Query: 81 AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQL 139 + WL +Y G ++ +T+++ + R G K +S + + Sbjct: 60 SFFCEEWLSKYAK--------GSVKPSTFRRYEGIIRNHFMPRFGDKKLSRITTGMLQGY 111 Query: 140 LDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEE 198 + E ++ P +L ++FK AQ +G + +NPA ++PRR+ L+ EE Sbjct: 112 VAERLSQVSPTTVLQEVVLLKEMFKHAQSWGYIK--HNPAQNLQRPRREKKEIDILTPEE 169 Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI-------------WDDHLHV 245 + + + TH + A L A++TG R G++ +K+ DI W+ H Sbjct: 170 VEFLL---ENTHEHYRVAFLTAVMTGLRAGELWGLKWDDIDWHSKQIYVRRTLWNGEFHT 226 Query: 246 IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV-KAN 304 + S+ +I + + L+ RC + + + +G N Sbjct: 227 PK----SRHSIGKVDMPDVLVEELKLWEIRCP--------PNKYNLVFPSPKGEPSEHQN 274 Query: 305 TLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQT-D 360 + F A A + +FH R + + G + Q+ LGH + T D Sbjct: 275 VVNRYFKPALRRAGLRV-----VSFHSLRHTNASIRIRAGQNIKYIQRQLGHASINTTLD 329 Query: 361 RY 362 Y Sbjct: 330 IY 331 >UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NM52_9DELT Length = 406 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 133/323 (41%), Gaps = 33/323 (10%) Query: 52 ATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQ 111 A+EA + +Q L ++ K + T S L Y ++ SG K+ Sbjct: 67 ASEATRSIIKQGLDPALKRTEEKTAHK-TSPTVSDLLTEYWDMELKESPSG-------KE 118 Query: 112 KAKPVSL-LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYG 170 + + V + G + ++ + RD A LLD A P ++ VL+ +F A G Sbjct: 119 RRRLVEKDVLPPWGKRKVAEITRRDAALLLDTVRARA-PVTGNRLQGVLVRMFNFAAERG 177 Query: 171 EVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI------ADATHRYMGNAMLLALVTG 224 + ++P + ++ + + + L+ +E K ++D A +R A+ + L+TG Sbjct: 178 VLE--HSPLMGLRKKKEQPRSRVLADKEIKLLWDALALDNTAMDIYRVSKLALKMILLTG 235 Query: 225 QRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAY 284 QR G++ M + +I D ++ E+ SK + L A+ +++ + R Y S Sbjct: 236 QRPGEVCGMTWDEIDGDTWNIPAERMKSKEPHNVPLGSMAL-----EIIEQARRY--SPR 288 Query: 285 LVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG 344 F +S + G + ++L+ + + T H+ R E G Sbjct: 289 GSTFVFKSSHFKEG-PITPHSLSKAILRHWQEMGVT----ERFTPHDLRRTLRTRLAEIG 343 Query: 345 LD---TQKLLGHKTQQQTDRYHD 364 +D +++LGHK Q Y+ Sbjct: 344 VDDVVGERVLGHKLQGIMAVYNR 366 >UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIK4_THEYD Length = 345 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 70/350 (20%), Positives = 129/350 (36%), Gaps = 52/350 (14%) Query: 24 NKVYWRYKHPVTGKFHALGT---NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGK 80 W + + GK T + +A I +A L D Sbjct: 6 RGNIWWFSVTIKGKQFRFSTKTTDRKKATEIYAKALLEL------------DNPTKDVEN 53 Query: 81 AITTSTWLD-RYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQL 139 I+ + + +Y + R +++ K ++ E I+ + RDI L Sbjct: 54 QISFGEFFENQYLPFSE--------RQASHQSKKYYFKVIPEWFKKIPINQITTRDIELL 105 Query: 140 LDEYIAAGRPRMAQVVRSVLIDVFKEA-QHYGEVPPGYNPALATKQPRRKITRQR-LSLE 197 + + P + + + ++A + K + ++ R R LSLE Sbjct: 106 QGDLLKGRTPASVNRIIATIKHSLRKAYEWELTEEETLKRVQRVKPLKGEVQRLRFLSLE 165 Query: 198 EWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQEKTGSKIA 255 E K+ ++A+ ++ ++ AL TG R G+I + +S D+ +H+ + K G + Sbjct: 166 ECHKLIEVAE---PHLKPIIITALNTGMRKGEILSLTWSQIDLKHGFIHLEKTKNGERRD 222 Query: 256 IPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARD 315 IP++ L + RD++ S Y+ E G ++ + +F A Sbjct: 223 IPMNDTLKIL---FRDLIKN--RRLDSDYV------FLNPETGKRLTD--IKRSFRTACK 269 Query: 316 LARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRY 362 A I FH+ R G+D Q+LLGHKT + T +Y Sbjct: 270 RAGITDFR-----FHDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTLKY 314 >UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_MOOTA Length = 390 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 112/305 (36%), Gaps = 38/305 (12%) Query: 81 AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQL 139 IT WL+R+ +R +T++ + L + G + + DI +L Sbjct: 68 KITVEQWLNRWLTDYAK----PHLRQSTWESYETVLRLHVIPTLGSIPLKKLQPADIQRL 123 Query: 140 LDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLE 197 + +G P + + VL + +A+ G + NP A K PR + Q L+ E Sbjct: 124 YASKLESGLSPTRVRYIHVVLHEAMSQARESGLLLQ--NPTEAAKPPRHPKKKVQPLNPE 181 Query: 198 EWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQE------- 248 + K+ + A Y A LLAL TG R G+I +++ D+ L V Q Sbjct: 182 QVKRFLETAKQDPLY--PAFLLALGTGLRRGEILGLRWQDLDLQKGILQVRQSLIRTREG 239 Query: 249 ------KT-GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 KT S+ IPL + A + V + + Y H E G Sbjct: 240 LKFEEPKTEKSRRQIPLPPSVVAALKRHKAWVNQNKLILGPDYEDHDL--VFPVENGRPR 297 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGHKTQQQ 358 F++ D A + H+ R L +G+ Q+ LGH T Sbjct: 298 DPKGFAEYFNRLLDKAGLPHIR-----LHDLRHTHATLLLLEGVHPKVVQERLGHSTVSI 352 Query: 359 T-DRY 362 T D Y Sbjct: 353 TLDIY 357 >UniRef50_A3VAJ4 Site-specific recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VAJ4_9RHOB Length = 392 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 133/365 (36%), Gaps = 52/365 (14%) Query: 8 NNVSVPNLYPLYSRKVNKVYWRYKHPVTGKF---------HALGTNEAEAIAIATEANTR 58 + V L+ S KV++ P + +L A+ IA + Sbjct: 30 RDQKVNGLHVRVSTTGAKVFYTLVRPNGSRRRIKIGPYPVVSLADARRRAMEIARDVELG 89 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 E+ A +D + K I + NT K + S+ Sbjct: 90 EFEKTPEVPEASADTLGEMIPKFIELHA------------------KPNT-KDWKRTESV 130 Query: 119 LRERAG--MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 L + G + I + +D++++LD IA G P A S + + G++ Sbjct: 131 LHKFDGLKDRPIDQIRRQDVSKVLDGIIANGTPTRANRALSAIKKLMNWCVMRGDIET-- 188 Query: 177 NPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 +P + P R++ R R LS E + I+ +DA G + L L++GQR +++ M++ Sbjct: 189 SPVALLRPPTREVQRDRVLSDAEIRAIWQHSDAEDYPFGPFLKLLLISGQRRSEVAGMRW 248 Query: 236 SDIW-DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 S++ D+ + + +++ L + + D++ + S ++ F + Sbjct: 249 SELNLDEGIWELP---ANRVK-NARLHIVPLPVQAVDILRGLHRFLDSDFV--FTTTGRS 302 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPA-TFHEQRSLSERLYKEQGLDTQKLLGH 353 A G F + ++ EG+P FH+ R + + G+ + Sbjct: 303 AISG-----------FGRLKERVDTALPEGTPDWRFHDFRRTASTGMAKLGVMPHVIDAV 351 Query: 354 KTQQQ 358 + Sbjct: 352 TNHKS 356 >UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q549_9BACT Length = 351 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 58/327 (17%), Positives = 113/327 (34%), Gaps = 42/327 (12%) Query: 44 NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGD 103 + + +A + EA R + +G T ++R+ + Sbjct: 25 TKNKKLAESIEAKLRTELIEGKYF-------DKYEGDLKTFKDLMERFMKE-----HAPK 72 Query: 104 IRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGR-PRMAQVVRSVLIDV 162 + LN K L G + A+ + + G+ P ++L Sbjct: 73 VSLNMQKSYTTSAKHLLSFFGDLSLLAITPKKVNDYKVSRKNLGKKPATINKELAMLSKA 132 Query: 163 FKEAQ-HYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLA 220 F A + + NPA + + R R LS +E K++ + + ++ + ++ Sbjct: 133 FCLAVKEWEWIRD--NPASKISKEKEANERDRWLSDDEEKRLL---ENSPEWLSDIIVFD 187 Query: 221 LVTGQRLGDISRMKFS--DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRD 278 L TG R ++ + + D++ + + + K G IPL+ I V + D Sbjct: 188 LHTGLRQDELLSLTWDRVDLFRKVIIIQESKNGKPRTIPLNQISLDILMEKTKVRSLKGD 247 Query: 279 YAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSER 338 + + ++ ++ L F A++ A I FH+ R Sbjct: 248 FVFPSSVM------------TKMNRRNLVRAFDIAKEKASI-----QNFHFHDVRHCFAT 290 Query: 339 LYKEQGLD---TQKLLGHKTQQQTDRY 362 ++G+D KLLGH T RY Sbjct: 291 RLAQRGVDIYRISKLLGHLNITMTQRY 317 >UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEQ8_ELUMP Length = 337 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 103/291 (35%), Gaps = 43/291 (14%) Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIA 137 + +T + +RY ++ + + T+ ++ R G ++ + DI Sbjct: 54 DKQDVTFAEIAERYWSLHGRKTRGAQTFKYTF-------DIILSRFGHMKVADITTEDIQ 106 Query: 138 QLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA-TKQPRRKITRQRLSL 196 + ++ P A S+ + +A + G NP + +Q + + Sbjct: 107 KFYNDTWERTSPSTANRHFSLFRAIINKALNLKL-YKGQNPCIGVVRQRDNPPRDKYFTK 165 Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQEKTGSKI 254 E+ K + A+ + + A++TG R +I +++ D+ + + + K+G Sbjct: 166 EDIKSLLVTAENR---LKPIIAFAVLTGCRKMEILNLRWKDVDFYGGIIRITMSKSGKPR 222 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 IPL+ L I ++ T+ ++ + L +F+K Sbjct: 223 EIPLANDLRPILLAM---------------------HTNPQDKVFNITVPALKYSFNKLL 261 Query: 315 DLARIDWGEGSPATFHEQRSLSERLY---KEQGLDTQKLLGHKTQQQTDRY 362 FH R LY D Q++LGH T + T RY Sbjct: 262 KKLGF-----EGYCFHTCRHTFASLYMQNDGNITDLQRILGHATIELTMRY 307 >UniRef50_Q3JTP5 Phage integrase family n=5 Tax=root RepID=Q3JTP5_BURP1 Length = 366 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 120/376 (31%), Gaps = 59/376 (15%) Query: 16 YPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIA 75 YP K YW PV+G++ L E R + LA + Sbjct: 10 YPRVYAKHGAWYWS--EPVSGQWIRL-------------CKLTDDETRLVERLAEERKKR 54 Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRD 135 + +D+Y +++ +L + K K ++ V Sbjct: 55 ERPEGSGDMRPLIDQY--VRESKLLHKE------KAWPKYGDYAGNGFRKVNVADVKPTH 106 Query: 136 IAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLS 195 + L + AG+ M +V+R+ L F+ G NP K + K + ++ Sbjct: 107 VHNWL-KVKYAGKLHMQRVMRAFLSGFFQWCVDKG--KRDTNPCREVKLKKPKPRQTYIT 163 Query: 196 LEEWKKIFDIADATH--------------------RYMGNAMLLALVTGQRLGDISRMKF 235 + I + T M + L +T QR +I +K+ Sbjct: 164 DAHFSAIRNAMLETTYKLNSGTDSEKEVVADVPTGPMMQCIIDLCYLTAQRSTEIRTLKW 223 Query: 236 SDI--WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS 293 SD+ +H + KT + + + I + +V+ R + + Sbjct: 224 SDVDREAGVIHFVPSKTADSSGVRVDFK---ITPEINEVLLRIQQIDGRPTI--GDMPVV 278 Query: 294 QAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL--- 350 +G ANT+ + A A + T + R+ + + G D + L Sbjct: 279 HTRKGKMYAANTILKAWKTAAKRANLS---HFGYTVKDIRAKALTDGERAGYDVKALQIA 335 Query: 351 LGHKTQQQTDRYHDDR 366 H ++ T+ Y R Sbjct: 336 AAHTDEKMTETYIKKR 351 >UniRef50_D2LJU9 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJU9_RHOVA Length = 393 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 118/335 (35%), Gaps = 55/335 (16%) Query: 43 TNEAEAIA---IATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRL 99 T EA+ A N AE++ + + K + D++ AI +L Sbjct: 66 TARREALRLLGEAASGNDIGAEKQAK------------RAKGLLFGHVADQFIAIHFPKL 113 Query: 100 KSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSV 158 K T + + L L+ G I+ + +A + PR A SV Sbjct: 114 KPR-----TRESYGTIIRLHLKPAFGATPIADIRKTSVATFHARHAE--TPRNANHALSV 166 Query: 159 LIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATH------RY 212 L + A+ G P NP ++ R + LS +E ++ A Y Sbjct: 167 LSKIMNWAEEQGLRPAESNPCRNIRKYRETKRERYLSPDELARLGAALAAAEDDKTVDPY 226 Query: 213 MGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLR 270 + A+ L L+TG RL +I ++++ + L++ KTG+K+ IPL+ + +L Sbjct: 227 IIAAIRLLLLTGARLSEILTLRWTYVDTYRRILNLPDSKTGAKV-IPLNQAALDLLGTL- 284 Query: 271 DVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFH 330 S V R Q L + + R A +D H Sbjct: 285 -------PRLNSNPFVLVGRVEGQ-------HLVNLQKPWRRIRKEAGLDDVR-----IH 325 Query: 331 EQR-SLSERLYKEQGLDT--QKLLGHKTQQQTDRY 362 + R S + G ++LGH T RY Sbjct: 326 DLRHSFASVSVGLGGSLPVIGRVLGHSQPATTARY 360 >UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4K8_9DELT Length = 395 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 136/384 (35%), Gaps = 40/384 (10%) Query: 6 RKNNVSVPNLYPLY-----SRKVNKVYWR-YKHPVTGK--FHALGTNEAEAIAIATEANT 57 ++ S P +Y + + K ++Y+ Y+ GK G +A+ A A Sbjct: 5 KRFKTSYPGVYYVEGQAVATGKPERIYYVMYR--RDGKLIEEKAGRQFQDAMTPAKAARI 62 Query: 58 RLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 R + + R A KA W + K + L+T +++ + Sbjct: 63 RAERIEGKAPSNNARREAEEAAKAAEVGRWTLAKLWTEYASHKPENHALST--DRSRFET 120 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGR-PRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 ++ G K + V D+ ++ + G+ P+ + V ++ + + G Sbjct: 121 YIKPAFGEKEPAEVLTLDLDRMRSRLLKQGKSPQTVKHVLALFKRLVRFGVKKGLCDSPD 180 Query: 177 NPALATKQPRRKI-TRQRLSLEEWKKIFDIADATHR-YMGNAMLLALVTGQRLGDISRMK 234 PR T + L +E ++ + N M LA+ TG R G++ +++ Sbjct: 181 PRKQTISMPRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELFKLE 240 Query: 235 FSDI--WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 + D+ +H+ K G IPL N + R V+A S Y+ F Sbjct: 241 WRDVDFERGFIHIRHPKGGKSQKIPL-------NDAARAVLASHPHVENSPYV--FPGQG 291 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG----LDTQ 348 + QV +N + KAR D+ H R L G L Q Sbjct: 292 GKQRVTIQVASNRI-----KARASLPADFRP-----LHGLRHLFASTLASSGQVDLLTLQ 341 Query: 349 KLLGHKTQQQTDRYHDDRGKGWSK 372 KLL HK+ T RY R + Sbjct: 342 KLLTHKSPNMTKRYSHLRDDALKQ 365 >UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodobacter sphaeroides RepID=Q3J1E6_RHOS4 Length = 413 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 74/368 (20%), Positives = 131/368 (35%), Gaps = 29/368 (7%) Query: 4 RPRKNNVSVPN-----LYPLYSRKVNKVY-WRYKHPVTGKFHALGT----NEAEAIAIAT 53 +P +P+ LY + K + RY+H + +LG + A A A Sbjct: 12 KPTDKRQEIPDSLCVGLYLIVQPTGKKGWQVRYRHGGVHRRMSLGAFPVLSLAGARERAR 71 Query: 54 EANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKA 113 + + + + G T + ++ +LKSG + ++ Sbjct: 72 QTLAAASAGTDPAAEVKAAKAPKLDGDRDKIKTLIGQFDKRHLSKLKSGAVVRRELERH- 130 Query: 114 KPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVP 173 + G + + + RD+ LLD +GR A VR+ L F + Sbjct: 131 -----VVSAWGERDVHQIGKRDVIDLLDGIADSGRVVTANRVRAYLAKFFGWCVERDIL- 184 Query: 174 PGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISR 232 +PA K ++ +R R L+ +E + + +A G + L+TGQRL ++++ Sbjct: 185 -ATSPAAGVKPAGKETSRARVLTDDEIRWFWTACEAEGFPWGPFGKVLLLTGQRLNEVAQ 243 Query: 233 MKFSDIWDD--HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFR 290 M S+I D HL + K G +PL+ + A D V R D + Sbjct: 244 MTDSEIRGDLWHLTADRTKNGRAHDVPLTGAVRA----ALDEVERVTDEEGRVRFIFTTT 299 Query: 291 STSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---T 347 + G L R + E TFH+ R + G+ T Sbjct: 300 GRTPVS-GFFKARAVLAEAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMARLGIPVRVT 358 Query: 348 QKLLGHKT 355 + +L H + Sbjct: 359 EAVLNHVS 366 >UniRef50_Q5NZR5 Phage-related integrase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NZR5_AZOSE Length = 277 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 97/283 (34%), Gaps = 30/283 (10%) Query: 99 LKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSV 158 ++ G + T + L++ G AV + I L Y A P A ++ Sbjct: 1 MERGKLSPETIDSNELELVALKQAFGKMAPEAVRPKHIWDYLHLYRGAEAPVRANREIAL 60 Query: 159 LIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIA------------ 206 L +F + G + NP ++ + +S E+ Sbjct: 61 LSRMFSRLVNAGAL--DLNPCTGVERNEENARDRLVSDAEFDAFLTFCRANGHLDEDSPA 118 Query: 207 ---DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLN 263 R + A +A +TG+ LG + ++ + I DD + + K G++ + + L Sbjct: 119 KRTSDAGRRLALAAHVAYLTGKALGQVLKISRTQIKDDGIEFGKRKRGARTLVEWTTELQ 178 Query: 264 AINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGE 323 A + ++ S YL+ + + ++ A + A Sbjct: 179 AAVDECLALPSK----ITSTYLIF----SGDGQPYTATGFKSMWQRMMNAWEEAG----- 225 Query: 324 GSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDR 366 TFH+ R+ + E G L GH+T+ + +D R Sbjct: 226 NERFTFHDLRAKTVTDTTEAGRKASDLTGHRTEAVVSKVYDRR 268 >UniRef50_Q129B4 Phage integrase n=1 Tax=Polaromonas sp. JS666 RepID=Q129B4_POLSJ Length = 387 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 74/373 (19%), Positives = 126/373 (33%), Gaps = 41/373 (10%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIATE-ANTRL 59 R + ++P L+ S K Y G +GT + A + A + Sbjct: 22 KRDEYRDEALPGLWLRVSSAGVKTYAVLARKKGGALERVTIGTADKLTPENARDKAKKII 81 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL- 118 A+ T A S R +K T + L Y L + ++ + + Sbjct: 82 ADLATGVSHAASAR---AKRGETTFAELLTDY-------LSNTTMKPRSLEAYQWLYKKH 131 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + G + +S V V I + L + I+ P A S++ F A G G NP Sbjct: 132 VEADLGKRKLSDVSVERI-RALHKKISKDTPTTANRCVSMVKAAFNWALKEG-TYTGANP 189 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 A K+ + L E F + + + +L L+TG R ++ M+++DI Sbjct: 190 AGHVKKNTETSRTRYLQPAELAIFFQALEESEEPAKSFFMLCLLTGARRANVLAMRWADI 249 Query: 239 W-DDHLHVI---QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 +D + I K G ++ IPL + L+ VA S ++ T Sbjct: 250 SLEDGIWRIPAGDAKAGEEMNIPLVPEAVTLLTRLKIEVADT-----SPWVFPADSKTGH 304 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLL 351 + ++ R + + H+ R G +T K L Sbjct: 305 YQEPK--------RAWATLRRRSGLADLR-----IHDLRRTMGSWLVRTGANTAINAKAL 351 Query: 352 GHKTQQQTDRYHD 364 GHK+ Q Y Sbjct: 352 GHKSMQAAAVYQR 364 >UniRef50_Q5P749 Similar to phage-related integrase n=3 Tax=Bacteria RepID=Q5P749_AZOSE Length = 411 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 75/377 (19%), Positives = 130/377 (34%), Gaps = 44/377 (11%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEA----N 56 R ++ L S K + Y+ G+ LG A + A +A N Sbjct: 25 KRDTYHDTKTTGLQLRVSATGVKSFSVYRRLKAGQPERVTLGKFPAMTVEQARKAAALVN 84 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 + + + T + + Y + G+ +L + Sbjct: 85 AEIESGANPAATKRAFK------AEPTLTEFFAEY------GTRHGEKKLAWPADVQRFR 132 Query: 117 SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRP-RMAQVVRSVLIDVFKEAQHYGEVPPG 175 L++ G K +S +D IA+ L + AG+ + +R++ VF +A +G + Sbjct: 133 DYLQKPMGNKRLSEIDRAMIAKALSDAEKAGKSVATVRNIRALASGVFGKAVEWGRL--D 190 Query: 176 YNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 +NPA K +K++R R L +E + F M + +LLAL+TG R ++ M Sbjct: 191 FNPAQGVKVAGKKVSRDRFLQADELPRFFAAVAEEDDTMRDFILLALLTGARRANVCAMH 250 Query: 235 FS--DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 + D+ + + K G + L I + +D ++ Sbjct: 251 WHELDLAAGVWRIPRTKNGEPQTVTLCPEAVMI-------LEARKDATGGGFVF-----P 298 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSP--ATFHEQRSLSERLYKEQGLDTQ-- 348 G V+ + A I +G P AT H+ R G Sbjct: 299 GTGRTGHVVEPK---KAVERVMARAGIPYGRDVPNGATLHDLRRTLGSWQARTGASLAII 355 Query: 349 -KLLGHKTQQQTDRYHD 364 K L HK+QQ T Y Sbjct: 356 GKSLNHKSQQATAIYAR 372 >UniRef50_C0AVY7 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AVY7_9ENTR Length = 121 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 43/101 (42%), Positives = 53/101 (52%), Gaps = 10/101 (9%) Query: 217 MLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 MLLALVTGQR+ DI M I++DHLH+ Q KT +IAIPLSL L+ I +SL DVV+ C Sbjct: 1 MLLALVTGQRISDIVTMHHDHIFNDHLHITQMKTSERIAIPLSLTLDEIEFSLSDVVSMC 60 Query: 277 RDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLA 317 RG V +L+ F RD Sbjct: 61 ----------SQENRLLTNNRGNPVNTWSLSRWFKICRDAV 91 >UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodobacteraceae RepID=A3V8A4_9RHOB Length = 386 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 60/325 (18%), Positives = 120/325 (36%), Gaps = 28/325 (8%) Query: 4 RPRKNNVSV-----PNLYPLYSRKVNKVYWRYKHPVTG--KFHALGTNEAEAIAIATEAN 56 RP+ V P + + W G K LG A +++ A EA Sbjct: 18 RPKDQRYDVFDASQPGFGVRVAT-SGALSWVLLTRENGRRKRITLGGYPAISLSKAREA- 75 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 LA+S+ + G+ +T+ + ++ +++Q + + Sbjct: 76 ---------ARLALSEIQEGTFGRKNAPATF----ETAVEEWYAREQRAKKSFRQVEQAM 122 Query: 117 SL-LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG 175 L + G + + D+ +++D G+ A VR+ + F A + Sbjct: 123 RLHVLPFLGRHQLDQIKKADLMRVIDRVAERGKLTQANRVRAFITRFFNFAIERDLLMS- 181 Query: 176 YNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 +PA A +P +I+R R LS +E +++ A+ G L ++T QR +++ M+ Sbjct: 182 -SPAAALPRPAVEISRDRVLSRDELCAVWETAEQMGFPFGRITQLLILTAQRRDEVAGMR 240 Query: 235 FSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC--RDYAVSAYLVHFFRST 292 +S++ D I K +K + L+ +L + R D + Sbjct: 241 WSELDLDRARWIISKERAKNGKAHIVHLSPQALALLSTIPRQNGVDLIFTTTGRSAVSGF 300 Query: 293 SQAERGAQVKANTLTMNFSKARDLA 317 S+A+ +++ F R A Sbjct: 301 SKAKAALDARSHVSDWRFHDLRRSA 325 >UniRef50_C9RBE5 Integrase family protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RBE5_AMMDK Length = 414 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 78/361 (21%), Positives = 125/361 (34%), Gaps = 55/361 (15%) Query: 32 HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRY 91 PV F+A EA+ T+A Q + +L R+ T WL + Sbjct: 62 RPVRKSFYA--RTREEAVKKLTQA----LHQASLGVLTAPARL--------TLGEWLATW 107 Query: 92 QAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAAG-RP 149 G +R T + + G + +V + L + A G Sbjct: 108 LETYKK----GKLRPTTLANYETVIRAYILPSLGSVPLRSVTPASLQALYNSLSARGLSA 163 Query: 150 RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR--RKITRQRLSLEEWKKIFDIAD 207 R ++V VL K+A G + NPA AT+ P+ R++ + L+ EE + A Sbjct: 164 RTVRLVHVVLNACLKQAVKNGLLV--RNPAEATEPPKLKRRVPVRPLAREEVEAFLKAAR 221 Query: 208 ATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD------HLHVIQEK--TGSKIAI--- 256 Y A LAL TG R G++ +K+ D+ + +++ K K+ + Sbjct: 222 GERLY--PAFALALKTGLRRGEVLGLKWEDVDLERGVLRVRRSLVEAKDPETGKVRLVFQ 279 Query: 257 -PLSLRLNAINWSLRDVVA-----RCRDYAVSAYLVHFFRSTSQ---AERGAQVKANTLT 307 P + + RDVVA + R Y + E G + Sbjct: 280 EPKTEKSRRTVPLTRDVVALLKSHKARQNEEKLYFGEAYEDNGLVFCTELGKPIWPRNFL 339 Query: 308 MNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQT-DRYH 363 F A ++ FH R L G + Q+LLGH+ T D Y Sbjct: 340 RAFHSVLKKAGLERHR-----FHALRHTFATLLLASGEELKNVQELLGHERISTTADVYA 394 Query: 364 D 364 + Sbjct: 395 E 395 >UniRef50_Q1NIG8 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NIG8_9DELT Length = 398 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 70/354 (19%), Positives = 130/354 (36%), Gaps = 38/354 (10%) Query: 27 YWRYKHPVTGKFH--ALG-TNEAEAIAIATEANTRLA-EQRTRQILAISDRIATSKGKAI 82 Y+ + + GK + +G +E + A E L + + A + +A Sbjct: 28 YYVARFQIDGKSYEEPIGWASEKWTVEAAKEKLAELRKSAKAGGPATSREARAKAAAEAA 87 Query: 83 TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDE 142 T +T+ I + L+ +T + K G + + R+I LLDE Sbjct: 88 TKTTFAQLLAEIWERELRHKKSGKDTRRLLEKDC---LPTWGNLPVETIRRREIVLLLDE 144 Query: 143 YIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKI 202 I P + V L +F A G + +P ++ K ++ L+ +E K + Sbjct: 145 -IEQRAPIVRNRVHGALTRLFNFAAERGII--DDSPCTRIRKLAEKGRKRVLTDDEIKTL 201 Query: 203 FDIADATH-------RYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI--QEKTGSK 253 ++ D R A+ L L+TGQR G+++ M + +I D ++ + K G Sbjct: 202 WEALDPEQVQPMDSYRLTKLALRLILLTGQRPGEVAGMTWDEIDGDTWNIPASRMKNGDP 261 Query: 254 IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKA 313 +PL+ +L + + S ++ R + A+ L+ A Sbjct: 262 NDVPLT------GLALETIEQARQLSGDSPFV------FRSTHRDGAMSAHALSRA--IA 307 Query: 314 RDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHD 364 I + E H+ R E G+D ++ LGH+ Q Y+ Sbjct: 308 THWQAIGFKERFTP--HDLRRTMRTRLAELGVDDVVAERCLGHRLQGVLAVYNR 359 >UniRef50_Q5FN31 Phage related integrase n=1 Tax=Gluconobacter oxydans RepID=Q5FN31_GLUOX Length = 332 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 103/291 (35%), Gaps = 40/291 (13%) Query: 83 TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAK-PVSLLRERAGMKLISAVDVRDIAQLLD 141 T + + + ++ +T + ++RE +S + + I +++ Sbjct: 47 TFARLCEDWLK----SNSFLSLKPSTQVGHRNIVLRMMREDFATFHVSDFEPKHIRAIIN 102 Query: 142 EYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR----LSLE 197 + + RP + +F+ A + PA ++ + + R + + Sbjct: 103 RF--SDRPASGNRWLRIFGILFRLAIEQDLIQVD--PARDVRRLKERAEGARPWTEVEVA 158 Query: 198 EWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIP 257 +++ + + A L L TGQR D+ ++ + I D + V Q+KTG+ + +P Sbjct: 159 QFQAHWPLGSRA----RTAFALLLYTGQRRSDVVKIGPACIKDGMIAVTQQKTGTSLMVP 214 Query: 258 LSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLA 317 + L + V A + R S G +K TL Sbjct: 215 ILKDLALALAATLGVKAYYLEVVPG-------RKPSSDSLGNLMKDWTLAA--------- 258 Query: 318 RIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLL---GHKTQQQTDRYHDD 365 G S + H R + R E G T ++ GHKT + +RY Sbjct: 259 ----GLPSDLSAHGLRKTAARRLAEAGCTTHQIAAITGHKTLAEVERYTRS 305 >UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR Length = 388 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 119/324 (36%), Gaps = 40/324 (12%) Query: 47 EAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRL 106 +A A+E ++A+ + R++ K T + DRY I Sbjct: 76 DARLKASELKGKIAQ--GYNPIEEKARLS----KEPTFKEFYDRYLDEYSK------INN 123 Query: 107 NTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEA 166 +K A V + + IS + DI +L ++ G+ A VL VF +A Sbjct: 124 KRWKDYAASVDRYAKHLYNRKISTIQKADIQELFNKLTKTGKYG-ANRFLEVLSPVFSKA 182 Query: 167 QHYGEVPPGYNPALATKQPRRKITRQRLSLEEW-KKIFDIADATHRYMGNAMLLALVTGQ 225 + + NP + K+ + + + L+ EE + I++ ++ M + L+AL T Sbjct: 183 IEWELLT--VNPVIGIKKHKEQSRDRYLTREEIPRFFTAISEEQNQVMKDFFLIALYTSV 240 Query: 226 RLGDISRMKFSDIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSA 283 R ++ M++ I D L++ K G +PL +++ ++ + S Sbjct: 241 RKDNVLTMRWEQISFADKQLYLPDTKNGDPHRLPLL-------DQAVEILKARKEQSDSI 293 Query: 284 YLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ 343 ++ S+S + + + + A I+ H+ R Sbjct: 294 WVFPSETSSSGHLQEPK-------KAWKRICKKAGIENLR-----IHDLRRTIPSWMAMT 341 Query: 344 GLDT---QKLLGHKTQQQTDRYHD 364 G + +LL H+ + T Y Sbjct: 342 GANQYVIGQLLNHRDPRSTAVYTR 365 >UniRef50_A1B9G7 Phage integrase family protein n=3 Tax=Rhodobacteraceae RepID=A1B9G7_PARDP Length = 335 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 39/269 (14%) Query: 104 IRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVF 163 + NT K + L E AG + + I ++ D P A L + Sbjct: 73 LAQNTKKSYRRHFGYLEEVAGHIDPATLRTAHIYEMRDAL--RDTPTDANRKIGTLSTLL 130 Query: 164 KEAQHYGEVPPGYNPALATKQPR-RKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALV 222 G + NPA ++ + + R+ + K A + L Sbjct: 131 AHGVRIGWL--DRNPAEGVEKLKGLRPPREPWPDTKIKAFRGEAAPLPL---LIFEMLLG 185 Query: 223 TGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAI---NWSLRDVVARCRDY 279 TGQR+GD+ +M++ DI D + V Q+KTG+ I +P + L AI D + + Sbjct: 186 TGQRIGDVLKMRWDDIEDGGIWVRQQKTGAGIFVPFTDELAAILEQTPRQGDTIIAQPNG 245 Query: 280 AVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSER 338 +Y T + + + H R S + Sbjct: 246 RPCSYSFAHKLVTEVRVKIDAMAWD------------------------IHALRHSAAAE 281 Query: 339 LYKEQGLDTQKLL---GHKTQQQTDRYHD 364 + G+ + ++ GH ++Q Y Sbjct: 282 IASLPGMSIEHVMAITGHSSEQMARHYSR 310 >UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JDB3_PSEPW Length = 340 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 121/340 (35%), Gaps = 43/340 (12%) Query: 30 YKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLD 89 ++ + K + + + A A + +R + + ++ T LD Sbjct: 26 WRAQIRRKGYPTLSATFDTKAEAQRWAAEIEGDMSRARF-----VDMREAESTTLDEALD 80 Query: 90 RYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER-AGMKLISAVDVRDIAQLLDEYIAAGR 148 RY + KQ+ + +E K ++A+ D+A D + G+ Sbjct: 81 RYLSEVTS-------TKKGAKQEQVRIKKWKEHKLASKGLAAIRSSDMAAYRDAELKEGK 133 Query: 149 PR-MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIA 206 ++ +V+ +F A + NP A + P+ R +R + E ++ A Sbjct: 134 STATVRLNLAVISHLFTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPAELTALYKAA 193 Query: 207 DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAIN 266 + + + LA+ T R ++ ++ + ++ K G + A+PLS R A+ Sbjct: 194 GQMNAQLPVFIELAVETAMRRSELLMLRRDHVRGKVAYLEDTKNGERRAVPLSSRAIALL 253 Query: 267 WSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSP 326 L + R + + NT++ F +A A I+ Sbjct: 254 EGLPTPIGGGRYF--------------------NLALNTISNYFPRACAAAGIEGLR--- 290 Query: 327 ATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYH 363 H+ R + + E+G ++ + GHKT RY Sbjct: 291 --LHDLRHEATSRFFERGFTMMEVASITGHKTLAMLKRYT 328 >UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2 Tax=Rhodobacterales RepID=Q0FPA2_9RHOB Length = 341 Score = 99.1 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 128/333 (38%), Gaps = 39/333 (11%) Query: 43 TNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSG 102 T + +A A + L R + + DR+ T L+RY+ Sbjct: 28 TTKRDAERWAKQTEAELQASALRIDIRVLDRV--------TVRDLLERYRREVTA----- 74 Query: 103 DIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDV 162 + + + LR+ + +S V + ++ DE + RP +L + Sbjct: 75 -TKRGAASESKRIDGFLRQTWVDRTLSKVTPQVFSRYRDERLRTVRPGTVIRDLGLLRSI 133 Query: 163 FKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADA-THRYMGNAMLLA 220 F+ A+ +VP NP ++P+ R +RL E + + + ++ ++LA Sbjct: 134 FEVARLEWDVPLQNNPLANVRKPKAPDPRERRLRPGELDLLLTACQSYRNDWLRAGIVLA 193 Query: 221 LVTGQRLGDISRMKFSDIWDD--HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRD 278 + TG R G+I +++ D+ D L + + K G IPL+ + LRD++ C D Sbjct: 194 IETGMRRGEILSIRWCDVSMDTSTLTIRETKNGHARRIPLTAVAVDV---LRDMLEVCDD 250 Query: 279 YAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSER 338 +V + V AN + + + D+ + FH+ R + Sbjct: 251 SSVRIF---------------PVSANAFRQCWQRCKGKVAEDYKQIESLRFHDLRHEAVS 295 Query: 339 LYKEQGLDTQKLL---GHKTQQQTDRYHDDRGK 368 + E GL ++ GH+ + RY R + Sbjct: 296 RFFEMGLSVPEVALISGHRDPRMLFRYTHLRAE 328 >UniRef50_C7DB29 Phage integrase family protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DB29_9RHOB Length = 336 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 96/305 (31%), Gaps = 32/305 (10%) Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 T +S SK A + + Y + ++ T K + + Sbjct: 40 TEYASILSGERPVSKITARSFKALIKSY----HRSSRYTQLKPRTALDYDKYLRFFEDVM 95 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 G + +D+ +L D A +P A VL + + G NPA Sbjct: 96 GDANPVNMKRKDVIRLRDS--NADKPYFANYSLRVLRVLLEHCVDLGWREM--NPARGVS 151 Query: 184 QPR-RKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 + + K R E + R AM L + TGQR+GD+ M++SDI D Sbjct: 152 EIKTVKKARSPWPQELLDQYRIACPLGTR-ERLAMELCVGTGQRIGDVIEMRWSDIQDGG 210 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 V Q KTG ++ IP+ L A A S + V + R Sbjct: 211 FAVRQNKTGKQLWIPILPELQAAL------------DAASRHSVFILTNERGTNRW---S 255 Query: 303 ANTLTMNFSKARDL-ARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDR 361 + K RD +D+ H R + E G + Q Sbjct: 256 YRGVAQAVKKVRDQINALDFD------IHSWRYNAACELVEAGCGDDLVAAVTGQSAAMV 309 Query: 362 YHDDR 366 H + Sbjct: 310 QHYTK 314 >UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus taiwanensis RepID=B3R9I1_CUPTR Length = 412 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 71/368 (19%), Positives = 134/368 (36%), Gaps = 39/368 (10%) Query: 14 NLYPLYSRKVNKVYWRYKHPVTG--KFHALGT----NEAEAIAIATEANTRLAEQRTRQI 67 LY K + ++ V G K LGT + A A A+E L Sbjct: 26 GLYLRLEPSGTKT-FCLRYTVAGSRKLKVLGTFPDMDIAAARKQASEMRELL---EVHDS 81 Query: 68 LAISDRIATSKGKAITTSTWLDRYQ-AIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMK 126 L + + + IT + ++ R K D L+ K + G + Sbjct: 82 LPSASKEVDALTSPITVAQLATEWEMRYCRQRYKRPDKELHYLKS------DIVPVIGQE 135 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 L+ V R ++ ++ + + G A VL +F A +G + P TK+ Sbjct: 136 LVQNVTGRHVSLVIGKIVDRGARTKANRTLCVLKSLFGYAVEHGYI--DATPVAMTKKGA 193 Query: 187 --RKITRQR-LSLEEWKKIFDIADATHRYM----GNAMLLALVTGQRLGDISRMKFSDIW 239 + R R L+ +E + ++ D+ R M + L L+T QR G+ M++ D+ Sbjct: 194 GGAEKARSRVLNPKEIETLWHALDSRRRRMNWRTKALLKLILLTAQRPGECCGMRWEDVD 253 Query: 240 -DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 + + + + + + L+ + S+ + ++ S Y+ + Sbjct: 254 LANGIWFLPAELTKSDRDHV-VHLSHMAVSILKMAE--KETGGSVYVFNSVVKGRDV--- 307 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKT 355 + LT AR LA ++G T H+ R + G+ T+K+L H+ Sbjct: 308 -ATTVDALTRAV--ARMLANGEFGAMKRFTPHDLRRTASTGMANAGVYPHITEKILNHRM 364 Query: 356 QQQTDRYH 363 + Y+ Sbjct: 365 KGVLAVYN 372 >UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPY0_ACIBL Length = 359 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 68/356 (19%), Positives = 120/356 (33%), Gaps = 42/356 (11%) Query: 17 PLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 P ++ K G+F A T++ Q + A R+ Sbjct: 2 PRRKTPDRDGVYQRKD-RPGQFWASWTDQNGKRRQRRLRGVFTLTQAKELLAAAQLRVER 60 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER----AGMKLISAVD 132 K T +R++ I+ L RL T + ++ G ++ + Sbjct: 61 IKVLGFAEPT-KERFEKIEARFLLHQRARL-TKAGYERERGVVETHLHDYFGQMQLALIR 118 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 DIA + + A P L +F+ + + NPA K P+ R Sbjct: 119 RGDIANFVTKRAAEVSPATVAKELVTLKHLFRLCVEWELLVL--NPATGVKAPKVAPGRV 176 Query: 193 R-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQEK 249 R L EE + + ++ LA TG R ++ +++ D+ + L + Q K Sbjct: 177 RWLQPEELRALLQAC---PDWLRPIAGLAAATGMRRSEVLGVRWFDVDRRNGCLTLRQTK 233 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 R+ +N S V+ R + S + +V ++M Sbjct: 234 NNES-------RIVFLNQSALHVIDSLR------------KGKSSEKLFPKVTPEQVSMG 274 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTDRY 362 F + I+ +H+ R L ++ G D Q +LLGHK + T RY Sbjct: 275 FLRTCRELGIEDFR-----WHDLRHCFASLLRQSGADLQDVAELLGHKDLRMTKRY 325 >UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LD60_RHOVA Length = 427 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 138/367 (37%), Gaps = 31/367 (8%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIATE-ANTR 58 A+R + + LY ++ K W ++ V G+ LGT A + A + A+T Sbjct: 17 ASRREIPDGIIQGLYFVHQPSGAKS-WAVRYRVGGQTRKLTLGTYPAIGLKPARDLASTA 75 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 LA + A + + A K KA +++ A +R + ++ + + Sbjct: 76 LAAVARGEDPAKAKKAAKEKEKAAPARDFVEAVAASFIERHSKQKNKETHIRETERILQR 135 Query: 119 -LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + + + + D+ ++LD + G P MA S + + A + + Sbjct: 136 EIVPVWKGRKLGDITRADVHEVLDAIVNRGCPTMANRTLSTVRKMCAWAVDRSFI--AVS 193 Query: 178 PALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 P K P + +R R LS +E + + +AT G L L T QR +++ M++S Sbjct: 194 PCHGIKAPASEKSRDRLLSEDEMRAAWLAFEATGWPFGPLAKLLLATAQRRDEVADMRWS 253 Query: 237 DI-WDDHLHVI---QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 +I + + I + K G +PLS AI L V DY + Sbjct: 254 EIDFKTRIWTIPAARSKNGQAHEVPLSEAALAILDGLPHVAGVS-DYVFTTTGKTPVSGF 312 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPA-TFHEQRSLSE---RLYKEQGLDTQ 348 S+A++ +T GEG P T H+ R + K Sbjct: 313 SRAKK---AFDEQITRQ-----------LGEGIPGWTLHDLRRTAASGMTALKSPPHVVD 358 Query: 349 KLLGHKT 355 +L HK+ Sbjct: 359 AVLNHKS 365 >UniRef50_A5N1F6 Integrase-related protein n=3 Tax=Clostridia RepID=A5N1F6_CLOK5 Length = 416 Score = 98.3 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 65/354 (18%), Positives = 121/354 (34%), Gaps = 64/354 (18%) Query: 61 EQRTRQILAISDRIATS---KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV- 116 E+ +Q + D I IT ++ ++ + ++ T + + + Sbjct: 45 EEANKQWVLFKDEIEKGIYLDSGKITFEEFIKKWLKDYAE----AELAPKTLYRYKELLY 100 Query: 117 SLLRERAGMKLISAVDVRDIAQLL-----DEYIAAGRP-----RMAQVVRSVLIDVFKEA 166 + + G ++ + I + D G+P R ++ + A Sbjct: 101 TRIIPALGHIKLNKLQPTHITEFYSNLREDGIRNDGKPGGLSERTILHHHRLISSILATA 160 Query: 167 QHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQ 225 +G + NPAL K P+ + R ++EE + + + + LA+ G Sbjct: 161 IQWGFILN--NPALRLKAPKVEKKEARHFNIEETAYVLQLIENEPIKYKTMITLAIYGGM 218 Query: 226 RLGDISRMKFSDI------------------WDDHLHVIQEKTGSKIAIPLSLRLNAINW 267 R G+++ + +SDI D + + +T I+IP+S+ Sbjct: 219 REGELTALTWSDINFDDCTIKINKSLQHLPGRDTFIKSTKTETTRLISIPISV------M 272 Query: 268 SLRDVVARCRDYAVSAY--LVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR--IDWGE 323 +L R ++ L H + A G + +T++ F K I + Sbjct: 273 TLLKEYKRWQNTEKLKLGNLWHDSDALFTATDGKSIFPSTISKWFLKFIRKHNESIINDD 332 Query: 324 GSPA-----------TFHEQRSLSERLYKEQGLD---TQKLLGH-KTQQQTDRY 362 P FH R S L QG+D K LGH +T TD Y Sbjct: 333 KIPPKDKSKYLLKEVNFHGLRHTSATLLINQGVDITTVSKRLGHARTSTTTDIY 386 >UniRef50_Q1K3L0 Phage integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3L0_DESAC Length = 417 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 72/380 (18%), Positives = 137/380 (36%), Gaps = 60/380 (15%) Query: 10 VSVPNLYPLYSRK-VNKVYW--RYKHPVTGKFHALG----TNEAEAIAIATEANTRLAEQ 62 SVPNLY + K ++ + H T F ALG +A+ A + E Sbjct: 36 HSVPNLYLSVWQNGSRKFHFKMTFLHETT--FIALGALGEITLPDAVQKAQLYRQMIQEG 93 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 + RI T + Y D+ + + + K + Sbjct: 94 LDPRRTLTERRIK-------TLEKFCHEYFEDFIDQ-NHKHPKKSRHMLKRW----ILPV 141 Query: 123 AGMKLISAVDVRDIAQLLDEYIA--------AGRPRMAQVVRSVLIDVFKEAQHYGEVPP 174 G + +D R +++ + + + A+ S+L +F+ A V Sbjct: 142 FGHIPLKQIDSRLVSEFVQQILTTVSQKTERRISGSTAKQALSLLSKLFQCAIDQHLV-- 199 Query: 175 GYNPALATKQPRRKITRQR-LSLEEWKKIFDIADA--THRYMGNAMLLALVTGQRLGDIS 231 NP ++P+ +R+R LS +E+ + + M+LA++ G R ++ Sbjct: 200 DANPCDGVRRPKVNRSRERYLSGDEYPRFIKATMSLIDRPQAKAIMILAVL-GLRPSEVL 258 Query: 232 RMKFSDIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 + + D+ D+ +H+ Q K G R +N RD++ + D A V F Sbjct: 259 GLAWCDVHLIDNRIHIKQAKNGES-------RFVTLNSVARDLLQQLYD-ARKKRAVWVF 310 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATF--HEQRSLSERLYKEQGLD- 346 S ++ G +++ F + ++A + F ++ R + G+D Sbjct: 311 PSRGKSSTG---HLQSVSKTFERICNMAEL-------PEFNLYDLRRSHATFLLQSGVDL 360 Query: 347 --TQKLLGHKTQQQTDRYHD 364 ++ L HKT T Y Sbjct: 361 FTIKEALHHKTLASTMVYAR 380 >UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3L6_DESAC Length = 397 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 61/356 (17%), Positives = 124/356 (34%), Gaps = 37/356 (10%) Query: 17 PLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRI 74 L K WR+K GK F +G ++ A + + I R Sbjct: 40 CLAVYKNGSRSWRFKQKFRGKRLFITIGPYPLFSLQEAIDKTRHF---KRLIADGIDPRQ 96 Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDV 133 +T + +++ D L T+ + + + + G ++ + Sbjct: 97 EQQPQSQLTLAQFVE------QDFLPYARKHYKTFHNQQNMLDKRIIKTFGATPLADISK 150 Query: 134 RDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR 193 R++ + S+L +FK A Y + NP K+ + +R R Sbjct: 151 REVMLFHQQVCDETSGTTGNRHLSLLSSIFKLALEYDLLEK--NPCRGIKKAKENRSRDR 208 Query: 194 -LSLEEWKKIFDIAD-ATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHVIQEK 249 L +E+ + + + A+ L + G R ++ +++ D+ D HLH+ K Sbjct: 209 FLQEDEYTRFIQVLQTKLDQPSACAIFLLIALGMRKSELLSLRWEDVSLADRHLHLRDTK 268 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 G + L+ + + + + + A + ++ F S + +E G + Sbjct: 269 NGESRYVALNSVSHGLLTKM-----KQKRKASNPWV---FPSRTSSESG---HLQDVRRT 317 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTDRY 362 F+ ++I H+ R G+D K+LGHK+ + T Y Sbjct: 318 FATVCRESKITGLR-----IHDLRRSHASHLLNAGVDISIVGKILGHKSLKSTQIY 368 >UniRef50_C4XKJ5 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XKJ5_DESMR Length = 410 Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 62/292 (21%), Positives = 104/292 (35%), Gaps = 32/292 (10%) Query: 82 ITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLL 140 IT + + + Y + K IR K L G + + + ++L Sbjct: 106 ITFADYCANDYLPLARVTKKPESIRKTEEHVKNW----LGPVVGRLPLKNIRQMHMQKVL 161 Query: 141 DEYIAAGR-PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEE 198 AGR PR Q V + ++ A++ G V +P P+ R+R LS E Sbjct: 162 LAMANAGRSPRSIQYVFATFRAIWNHARNNGFVQV-QSPTKGVALPKVNNERKRYLSRPE 220 Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQEKTGSKIAI 256 + + LL+L TG R +++ + + D+ + ++ K AI Sbjct: 221 ADALLAELATRSPQTHDLALLSLDTGMRFSEVTGLTWGCVDLDKGRIDILNAKGEKDRAI 280 Query: 257 PLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDL 316 P++ R+ + S+ S L+ R Q ++ +F A + Sbjct: 281 PMTARVKELFESMT--------PGASNELIFKSRVGGQI--------GKISKSFDLAVEK 324 Query: 317 ARIDWGEGSP---ATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRY 362 ++ P +FH R E G D QK LGH T T RY Sbjct: 325 LGLNKDVDDPKQIFSFHCLRHTCASWLIEAGTDLYVVQKTLGHSTPVVTQRY 376 >UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWR9_9PROT Length = 391 Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 125/353 (35%), Gaps = 36/353 (10%) Query: 23 VNKVYWRYKHPVTGKFHALGTNEAEAIAIAT----EANTRLAEQRTRQILAISDRIATSK 78 + YK K + GT A ++ A EA L ++ I + + + Sbjct: 37 TKTFVFIYKINGQKKRLSFGTYPAMSLNEAHLLYEEAKLEL--EKGNDPALIKAKKSQLE 94 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIA 137 +T + Y + +R ++++ + ++ + R + ++ D+ Sbjct: 95 KNEVTIPELIKLYIN------QYAKVRKTSWEEDERQLNKDILPRWKNRKAIEINKSDVH 148 Query: 138 QLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSL 196 +LD I G P A + +VL VF A+ G V NP P + +R R L+ Sbjct: 149 AVLDTLIERGAPIGANRLLAVLKKVFNYAKEKGYVTN--NPCDEITPPATETSRDRVLTA 206 Query: 197 EEWKKIFDI--ADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKI 254 E K + H NA+ L+T QR +++ +++DI D VI T Sbjct: 207 NEIKTFWHQLDCTNMHSSTKNALKFQLITLQRRKEVALARWNDIHGDT-WVIPAGTAKNK 265 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 + L+ L ++ S +L ++ + L+ R Sbjct: 266 KRH-DVHLSQFAKKL--LIEAKSYSKDSPFLFPSPCGAGSKH----IRPDALSKAVK--R 316 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ----KLLGHK-TQQQTDRY 362 ++ + + SP H+ R + + + + +L H + T Y Sbjct: 317 NMETLMVQDFSP---HDLRRTAATFLTKSKIANRLVLSLMLNHSQGKSVTAVY 366 >UniRef50_B8GSD9 Integrase family protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSD9_THISH Length = 361 Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 106/310 (34%), Gaps = 33/310 (10%) Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 + + T RY + + + + + R G L +V Sbjct: 48 ELEPVPAQGPTVEELARRYIEEY-----ARQHKRSWKRDHEHLERDVLPRLGEMLAGSVT 102 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 DI ++L A G P A V +V ++ A + NP L K P +++ Sbjct: 103 RGDIREMLSGVAARGAPVAANRVLAVCKKMWNWALDHEVSGIETNPCLRIKPPAPTRSKE 162 Query: 193 R-LSLEEWKKIFDIADA----------THRYMGNAMLLALVTGQRLGDISRMKFS--DIW 239 R L++ E + + D R A+ L L+TGQR G+++ M + D Sbjct: 163 RVLTMSEIRTLLAALDRDEMPAGCRAWPTRATRVAIQLILLTGQRPGEVAGMALTELDRQ 222 Query: 240 DDHLHV--IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 D + + K G +P+ A L D R SAY+ R + R Sbjct: 223 DGWWTIPGERAKNGRAHRVPIC----AGAKRLIDEALALRLDPKSAYVFPSPRRSGGR-R 277 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHK 354 + A ++ ++ R+ I T H+ R G+ + +LL H Sbjct: 278 DRAIAAEAISRAVTRLREHVGIPHW-----TAHDLRRTCASHLAGLGVSREVIARLLNHT 332 Query: 355 TQQQTDRYHD 364 + T Y Sbjct: 333 DRSVTSIYER 342 >UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUB8_9BACT Length = 347 Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 33/292 (11%) Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIA 137 G+ T S D+Y ++ K + + KA + +L+E G + + I Sbjct: 54 PGEEKTLSELFDKYL---EEHSKPNKSSKSYIRDKAISLRMLKE-FGDVTLIEIGTEQIF 109 Query: 138 QLLDEYIAA-GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LS 195 + P + L F+ A +G + NP + + K +R L+ Sbjct: 110 DYKKKRREENLAPASLNKEIAFLRHAFEMAVLWGWLE--VNPVSRIPREKVKNRMERWLT 167 Query: 196 LEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI--QEKTGSK 253 EE +++ ++ + ++ AL TG R ++ + ++ + D ++ +K + Sbjct: 168 GEEEERLLKAC---PEWLRDMVIFALNTGFRQNEMLSLTWNQVDWDRKAILFWDQKNNGR 224 Query: 254 IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKA 313 +P++ + + + V + + G A + +FS A Sbjct: 225 DTVPVNEKAIDVLKRIGKVKSLSSGHVF------------LTSNGTPFIARNVVRSFSLA 272 Query: 314 RDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRY 362 + A+I +H+ R G+D Q+L ++ RY Sbjct: 273 LEKAKITNFR-----WHDLRHTFATRLVHAGVDLYTVQRLGRWRSLSMVMRY 319 >UniRef50_UPI0001BC6CC7 phage-related integrase n=1 Tax=Vibrio parahaemolyticus AQ4037 RepID=UPI0001BC6CC7 Length = 385 Score = 97.1 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 67/378 (17%), Positives = 127/378 (33%), Gaps = 49/378 (12%) Query: 3 ARPRKNNVSV-------PNLYPLYSRKVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIAT 53 RP K V P L L + K + W + GK + + GT A Sbjct: 17 PRPAKGEQGVEYPWKKNPRLRVLVTAKSMR--WIVRLGWKGKRYYESFGTYPEMKFAE-- 72 Query: 54 EANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKA 113 Q Q +A A KG +T + D + R D T+ ++ Sbjct: 73 ------FNQLAYQFIADVQSGAYQKGARLTVQQFFDDV-VLPYSRNHHRD--SKTFLSRS 123 Query: 114 KPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVP 173 K + G + ++ V RD+ + L+ + L +F A + + Sbjct: 124 KR---VMAAFGKERVTDVTRRDVERFLNSLTDLSHA-SINRYHAFLSKLFSMAVEHEII- 178 Query: 174 PGYNPALATKQPRRKITRQR-LSLEEWKKI-FDIADATHRYMGNAMLLALVTGQRLGDIS 231 +P K+ + R LS +E + + + +A++L+L+TG R+G++ Sbjct: 179 -DKSPVKGVKKRVENNAKDRVLSSKEMESFCRNACAEPNFLHASALMLSLLTGMRIGNVI 237 Query: 232 RMKFSDIWDD--HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 + S + DD + K+G I S + ++ +C + + ++ Sbjct: 238 SLTRSMLADDLSSALLPMTKSGKSQRIYFS-------EPAKRLIRKCLKVSFNDWVFPSL 290 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--- 346 + + + + + + +P T H+ R D Sbjct: 291 NNRGEHIAYPRACMERIQQAMKQ-------EGCLDAPFTIHDLRRTYATQMLIATNDIRL 343 Query: 347 TQKLLGHKTQQQTDRYHD 364 Q+ LGH T+RY Sbjct: 344 AQQSLGHSNVNVTERYAY 361 >UniRef50_A6D7H3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D7H3_9VIBR Length = 378 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 109/320 (34%), Gaps = 30/320 (9%) Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 E+ Q +A A KG +T + D R +K + Sbjct: 66 FERLACQFIADVQSGAYRKGSRLTVQQFFDEVLVPFSQRHHRD------HKTFVSRSKRV 119 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 G K I+ V RD+ + L+ + + +F A + + +P Sbjct: 120 MTAMGRKRITDVTRRDVEKFLNSLTG-LSNSTLNRYHAFVSKLFSMAVEHDII--DKSPV 176 Query: 180 LATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGN-AMLLALVTGQRLGDISRMKFSD 237 K+ + R LS +E + A A ++ A++L+L+TG R+G++ + S Sbjct: 177 KGIKKLVENNQKDRVLSSQEMESFCRHACAEPNFIHAYALMLSLLTGMRVGNVMSLTRSM 236 Query: 238 IWDD--HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + DD + K+G I S + ++ +C + + ++ ++ + Sbjct: 237 LADDLSSALLPMTKSGKSQRIYFS-------EPAQRLIRKCLKVSFNDWVFPSLKNQGEH 289 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLG 352 + + + + +P T H+ R D Q+ LG Sbjct: 290 IAYPRACMDRIQQAMKA-------EGSLEAPFTIHDLRRTQATQMLHVTNDIRLVQQSLG 342 Query: 353 HKTQQQTDRYHDDRGKGWSK 372 H T+RY + ++ Sbjct: 343 HSNVNVTERYAYYQNNHLAQ 362 >UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsugamushi RepID=A5CCP8_ORITB Length = 414 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 118/333 (35%), Gaps = 42/333 (12%) Query: 46 AEAIAIATEANTRLAEQRTRQILAISDRIATS---------KGKAITTSTWLDRYQAIQD 96 EA IA E T +A + + +I + K IT +Y Sbjct: 78 KEARKIARELKTLMANGIDPRAVKHQQQIEENENRIKERERKANDITFKELCYKYIE--- 134 Query: 97 DRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVR 156 + I +K+ A V + K IS + + DI + ++ G+ A + Sbjct: 135 ---EYAKIYTINWKENADRVHTYAQALYEKKISKIRMSDIEPIFNDISKEGKYATANALL 191 Query: 157 SVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI-ADATHRYMGN 215 + L +F +A +G + NP L +Q + + +RLS +E + + + + Sbjct: 192 ATLRTIFNKAIKWGLIEN--NPTLGIEQHKLQARERRLSYDEMGRFLQVLCGEASPLIRD 249 Query: 216 AMLLALVTGQRLGDISRMKFSDIWDDHL--HVIQEKTGSKIAIPLSLRLNAINWSLRDVV 273 LLAL TG R ++ M++ +I + H+ + K G IPL+ I R ++ Sbjct: 250 FALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEI-LQARKLI 308 Query: 274 ARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR 333 + + S S +E G NT + + A I H+ R Sbjct: 309 STSKWVLPS----------STSESGHLSHPNT---AWKIICEKASIKNFR-----IHDLR 350 Query: 334 SLSERLYKEQGLDTQKL---LGHKTQQQTDRYH 363 + G + + L H T Y Sbjct: 351 RTFASCMGDAGESQRTISIALNHINPNSTIPYT 383 >UniRef50_C9CXZ5 Phage integrase n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CXZ5_9RHOB Length = 391 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 72/359 (20%), Positives = 123/359 (34%), Gaps = 44/359 (12%) Query: 22 KVNKVYWRYKHPVTG-------KFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRI 74 + K + YK+ G ++ +G + A A R SD+I Sbjct: 35 QSGKKRYIYKYRTHGGGRRAQTRWMTIGNYGEIPLETARNIALECAAMVARGQDPQSDKI 94 Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVR 134 K +A + R++ RLK IR Y+ K + L G + ++ + Sbjct: 95 --KKREAPSLVDLWGRFEESDMKRLKPATIRD--YRSLWKNI--LEPALGKRRVADISRA 148 Query: 135 DIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL 194 D+ +L + P A +VL + A+ + G NP + R + L Sbjct: 149 DVDRLHRSM--SDTPYQANRSIAVLSKMMTLAEIWEWRDQGTNPCRYVTRHREGKRERYL 206 Query: 195 SLEEWKKIFDIADA------THRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV--I 246 S EE +++ M N L L+ G R +IS +++ I + + Sbjct: 207 STEELERLGAALTNLVDLGLLWPDMANLFRLLLLVGARRSEISNCEWNWIDWERRIIALP 266 Query: 247 QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTL 306 KTG+K PL L AI V+ + F + L Sbjct: 267 DSKTGAK---PLFLSNEAIT-----VLQNQKITTRHQSSKFVFPGAKANK-----AIVNL 313 Query: 307 TMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRY 362 + + + A ++ H+ R + + QG+ +LLGH Q T RY Sbjct: 314 SKPWKLICEEAELENLR-----IHDLRHTAASIAVGQGVALPIIGRLLGHTQTQTTARY 367 >UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM9_9DELT Length = 409 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 67/377 (17%), Positives = 123/377 (32%), Gaps = 40/377 (10%) Query: 4 RPRKNNVSV--PNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEANTRL 59 RP+ + N + + W + + GK LG A + A Sbjct: 12 RPQSKKYYLREANGFSVRIMPSGAKTWLFIYTFDGKRKEMNLGHYPAVTLEAARRKYRAA 71 Query: 60 AE--QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 + ++ +A+ + + S +D Y R K + + Sbjct: 72 FDLFEQGNDPVAMHLEKKEERRRTPFLSDLVDEYINKHAMRFKRSWAKDQAILNRD---- 127 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + G + + RD+ LL++ + G P MA ++ +F A + + Sbjct: 128 -VVPAWGQRKAVDISKRDVILLLEKIVDRGSPGMANNCFQIIRKMFNFAVDREILE--IS 184 Query: 178 PALATKQPRRKITRQR-LSLEEWKKIFDIADAT--HRYMGNAMLLALVTGQRLGDISRMK 234 P K P K+ R R LS EE + ++ + + A+ L LVT QR G++ M Sbjct: 185 PCTGVKMPAPKMARDRVLSEEEIRVLWSGLERAKISHEVQRAIKLILVTAQRPGEVMGMD 244 Query: 235 FSDIWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 FS+I + + K G + L+ + F S Sbjct: 245 FSEIEGRWWTIPADRAKNGKAHRVYLTDTALEL--------------IGENTGGFVFPSP 290 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---K 349 E + +N +T+ + +D + T H+ R + E G + Sbjct: 291 RHRENPRPIGSNAMTVAHRRNKDKIPL-----EDFTPHDLRRTAATFMAEMGTMDEVIDA 345 Query: 350 LLGHKTQQQTDRYHDDR 366 +L H Y+ R Sbjct: 346 ILNHSKMGVIRVYNQYR 362 >UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5P1_9RHOB Length = 365 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 107/312 (34%), Gaps = 51/312 (16%) Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRD 135 ++ K +T + D Y K+ I K + ++ G L+S + Sbjct: 53 QARRKDLTVAELCDLYLEEGTATKKASTIA----TDKGRIERHIKPVIGDLLVSDIKANH 108 Query: 136 IAQLLDEYIAAGRPR--------------MAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 + LL + PR A +L +F A G NP Sbjct: 109 VRTLLKKVAEGNLPREGVGPVADKLGGKGTASRTVGLLGGIFSFANELGYRTD--NPVHG 166 Query: 182 TKQPRRKITRQRLSLEEWKKIFDIAD------ATHRYMGNAMLLALVTGQRLGDISRMKF 235 K+ + ++ L+ E ++F++ + A + + LLAL TG R G+I ++K+ Sbjct: 167 VKRFPDQKNQRYLTQSELTRLFELLEEIEADGANPKAVKIIKLLAL-TGARRGEIEQLKW 225 Query: 236 SDIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS 293 S+++ LH KTG K +IP+S + + RC D S Y+ R Sbjct: 226 SEVFLEQGTLHFEDSKTGQK-SIPISAAVIGLLREAEQ--ERCID---SPYVFPSERGDG 279 Query: 294 QAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKL 350 +V + T H+ R L G L Sbjct: 280 FYVGATKVWRDLRTKF-------------GDEKLRMHDLRHSFASLAVAGGASLPMIGAL 326 Query: 351 LGHKTQQQTDRY 362 LGHK T RY Sbjct: 327 LGHKDTATTQRY 338 >UniRef50_B8R670 Integrase n=4 Tax=root RepID=B8R670_9CAUD Length = 368 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 59/364 (16%), Positives = 110/364 (30%), Gaps = 42/364 (11%) Query: 22 KVNKVYWRYK--------HPVTGKFHALGTNE-AEAIAIATEANTRLAEQRTRQILAISD 72 K W ++ PVTGK ++ +A L E +RQ Sbjct: 6 KNENGNWAFRAFWFEHSIDPVTGKTVLTRKSKFQSGFNTKRQAQIALGEFESRQA----- 60 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 +G+++ + Y +R T + + I + Sbjct: 61 -----QGESVLANPPFFDYAEDFIKYNVENRVRPATLTAYKVALKRIESNFPNIPIKQIT 115 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR- 191 LL++ V + K A G V + + + + Sbjct: 116 RSMFQSLLNQLSIKYSKSTVNQTAVVFSQIMKLALADGLVVRDVTSFVQIPEKAQDKRKI 175 Query: 192 QRLSLEEWKKIFDIADATHRYMGNA---MLLALVTGQRLGDISRMKFSDIWDDHLHVIQE 248 LSL + K + A +L A+ TG RL +++ + + D+ + + ++ Sbjct: 176 DYLSLADVKTLVSHIKDNLNTTRVAPYFILTAIETGARLSELAALTWDDLTPTSITITKQ 235 Query: 249 KTG----SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKAN 304 + SK S+R +I L +++ + V+ + Q G + Sbjct: 236 RNRDGIVSKPKTESSVRTVSITKDLYNLLQDLK--------VNKKKLIFQQPNGIVPDPS 287 Query: 305 TLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKT-QQQTD 360 +L + I FH R L G+D + LGHK T+ Sbjct: 288 SLNFALKRLMKECGIKRH---GFHFHSLRHTHVALLLNAGVDILTISQRLGHKNVSTTTE 344 Query: 361 RYHD 364 Y Sbjct: 345 IYAY 348 >UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALQ5_9BACT Length = 367 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 60/351 (17%), Positives = 110/351 (31%), Gaps = 43/351 (12%) Query: 19 YSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 + R V+ W ++ GK + A R+ Q + R K Sbjct: 11 FERPVDSGIWWVRYTWQGKEI---RRKIGRKTDAKNYYARVRAQ------ILEGRYEPEK 61 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 + +T WL Y + + Q+ G + I+++ ++ + Sbjct: 62 PRVVTLGAWLGEYME---------TVTSVSLSQQRGYAKFWTNTLGGRPIASIKTAELER 112 Query: 139 LLDEYIAAGR--PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL 196 + AG+ P + L F A G + NP + R Sbjct: 113 IQVSLREAGKLAPSTINRHFAFLKHTFNIALRDGLIKE--NPVKGVHFFKEPKGRTVFLS 170 Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQEKTGSKI 254 E + + + + + LA+ TG R + +++ D+ L V K+G Sbjct: 171 EADEAKLKESFSPEYW--PYVELAIHTGLRQSEQFNLRWENIDMTSRVLTVPVSKSGLTR 228 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 +PL+ A+ L+ R +S ++ ++ G F A Sbjct: 229 HVPLNDTALAVLRDLKA-----RQVILSPWVFPSPVDHTKPRDGNAFYKKV----FVPAI 279 Query: 315 DLARIDWGEGSPATFHEQR-SLSERLYKEQG--LDTQKLLGHKTQQQTDRY 362 + A + +H R + RL + QKL GHK T Y Sbjct: 280 EKAGLS-----GVVWHTLRHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIY 325 >UniRef50_B9K2P6 Integrase n=1 Tax=Agrobacterium vitis S4 RepID=B9K2P6_AGRVS Length = 344 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 97/301 (32%), Gaps = 45/301 (14%) Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 + SK T S + Y D + + +T + RE G K + + Sbjct: 55 EVGKSKSAPGTVSALVVSYYKTSDFQ----RLSESTKTTYRGIIERFREEHGAKRVHHMQ 110 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 +++ +++ E A P A + ++ + A P + + + Sbjct: 111 AQNVKKIIGE--KAATPAAANNLLRIIHILMLHAVDLQWRRDD---------PTKDVKKI 159 Query: 193 RLSLEEWKKIFD-------IADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV 245 R E + + A+ L L TGQR D+ RM + D + + Sbjct: 160 RHKSEGFLTWEEHHIEQFTAYHKPGTRAHLALSLLLYTGQRRSDVVRMGRQHVRDGWISI 219 Query: 246 IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANT 305 +Q+KTG + IP + +DV+ L + +G Sbjct: 220 VQQKTGQLVEIPFHA-------AFKDVLNA---------LPLKNMTFLTTAQGKPFTPAG 263 Query: 306 LTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLL---GHKTQQQTDRY 362 T F A + + H R + R E G +++ GH++ + RY Sbjct: 264 FTNWFRDMTKEAGL----PDKLSPHGLRKAACRRLAEAGCTPHQIMAISGHQSLDEVTRY 319 Query: 363 H 363 Sbjct: 320 T 320 >UniRef50_Q2W8W7 Integrase n=2 Tax=Magnetospirillum RepID=Q2W8W7_MAGSA Length = 359 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 108/270 (40%), Gaps = 40/270 (14%) Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 L+ + +S++ VRD + E A P+ ++ V+ +++ ++ E+ NP Sbjct: 103 LKHPLSKRTLSSLKVRDFQAWVTEKKATVGPKTIRLHIGVISNLYNRLENLLEIEALPNP 162 Query: 179 ALA-TKQPRRKITRQRLSLEEW----------KKIFDIADATHRYMGNAMLLALVTGQRL 227 L P + +RL++ E I ADA + ++ A+ AL R Sbjct: 163 VLKLILPPLPEGRDRRLNVIEHDDGTVRNEAEALIGACADAVNPWIRPAVEFALDGAMRR 222 Query: 228 GDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVH 287 +I +M++ + + + +P ++ + RD A+S V Sbjct: 223 NEIVQMRWEHVDLN---------AGMVRLPAAITKTGV----------SRDVALSPAGVQ 263 Query: 288 FFRSTSQAERGA--QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL 345 R+ ++ G + A+ L F +AR A +D FH+ R + +E+GL Sbjct: 264 VLRTLPRSIDGRVFPLTADALYRAFVRARKRAGLD-----DLHFHDLRHEAASRLREEGL 318 Query: 346 DTQKLL---GHKTQQQTDRYHDDRGKGWSK 372 D ++ GHKT Q RY + K + Sbjct: 319 DLMEIASITGHKTLQMLKRYVHVKAKDVVE 348 >UniRef50_B6G0S2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0S2_9CLOT Length = 376 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 69/373 (18%), Positives = 140/373 (37%), Gaps = 44/373 (11%) Query: 16 YPLYSRKVNKVYWRYKH--PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDR 73 Y RK Y Y + GK + A +N A ++ + AI + Sbjct: 8 YGGGVRKRGNTYHYYFDGKTIDGK-------RNKIEKSAKTSNKSEALKQLEK--AIEEY 58 Query: 74 IATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMK-LISAVD 132 + ++ ++ + + + + + D++ +TY + ++ + + L+ + Sbjct: 59 YMSEIDFTLSDISFAEAREKFLSEYVAN-DLKDSTYTNYKQKLNKPQIKVLEIYLLKDIR 117 Query: 133 VRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 + I ++D G M + + +F + NP P + Sbjct: 118 AKHIQNIIDYMALNGFSKNMVKNTLRTISSLFNFCIRAELIKD--NPCDKVVLPSKLTQP 175 Query: 192 QR---LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHV- 245 +R L+ +E K+I + TH Y+ +++L L TG R G+ +++ D+ ++V Sbjct: 176 ERKVALTNKEVKRILNRFKNTHWYL--SLMLPLYTGMRRGECCGLRWKNVDLDKGIIYVR 233 Query: 246 ---IQEKTGSKIAIPL-----SLRLNAINWSLRDVVARCRDYAVSAYL-VHFFRSTSQAE 296 Q+K G K I S+R I L + + + S + + + Sbjct: 234 ENLTQDK-GKKWIISTPKTKSSIRTINIPLPLLEALKWQLERNKSNNVATNSDTHVLVRD 292 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGH 353 G+ + +TL S+ I++ G +H R L E+G D LLGH Sbjct: 293 NGSIITNDTL-KYLSRV-----INYDLGIKFNYHNLRHTYATLLIEKGANIKDVSVLLGH 346 Query: 354 KTQQQT-DRYHDD 365 + + T D Y ++ Sbjct: 347 ASIKTTMDIYVNN 359 >UniRef50_B9QS39 Site-specific recombinase, phage integrase family protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QS39_9RHOB Length = 416 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 127/326 (38%), Gaps = 29/326 (8%) Query: 29 RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWL 88 R++ PV G N + + A ++ + AI D G T L Sbjct: 48 RFRSPVEVGKDGKGKNRRLELGEWPALPVKDARKKALAVKAIVD-----GGDDPTLRKEL 102 Query: 89 DRYQAIQDD---RLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYI 144 + I+D + D++ NT +++ + + ++ + G +S V+ +A + + Y Sbjct: 103 KGAETIRDLVAWYMTIIDLKPNTLRERERQLDNVILPKVGDIRLSKVNYSVLASVWEPYE 162 Query: 145 AAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL-----SLEEW 199 A + RMA + + L +F EA G + NP L K + + R+R ++ E Sbjct: 163 VADKKRMASALFATLRHLFNEAHERGRI--AENPLLGRKLKIKPVRRKRYLRVNETINEV 220 Query: 200 KKIFDIADATH--RYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV---IQEKTGSKI 254 + DA + A+ L L+TGQR +I M+ S+ D L + K G + Sbjct: 221 AAFWHGLDAVPLDQVTKIALRLRLLTGQRTEEIYGMRESEFIADDLWFLSADRTKNGEEH 280 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 +P+S + R + R R L+ + S +R ++ ++ Sbjct: 281 IVPMSPMALDLINEARALAQRKRGD--ETDLIFPSLTRSIPKRWVPTAVGVMSKAINRNY 338 Query: 315 DLARIDWGEGSPATFHEQ-RSLSERL 339 + ++ T H+ R+LS Sbjct: 339 EAMGLEH-----FTPHDLRRTLSTHC 359 >UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AN30_PELPD Length = 367 Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 123/369 (33%), Gaps = 57/369 (15%) Query: 13 PNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD 72 P +Y + K +W V GK E+ + +A+ LA ++ I+ Sbjct: 6 PGIY-----RRGKTFWITYMGVDGKQQW----ESTRSKLKADADYLLACRKKEVAEGITP 56 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 K T ++Y YK KA V L+ G + + Sbjct: 57 VTFNRKKYTTTFDQLAEKYLEYCK--------AQRDYKSKAGRVRRLQRTFGEMRLIDIT 108 Query: 133 VRDIAQLLDEYIAAGR--------------PRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + ++ + + P + L ++F +A+ +G +P Sbjct: 109 LEELERYQSARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWGLIPDSTLK 168 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS-- 236 + + ++ R RL ++ + D+ R + ++ AL TG R G+I + + Sbjct: 169 TVRKVRLTKENNR-RLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHV 227 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 D+ + + K G IP IN +L D+ S Y+ Sbjct: 228 DLKHGFIRIADSKNGESRDIP-------INAALADMFKGVVRRIDSPYVF--------TN 272 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGH 353 + + +F+ A A I FH+ R G+D +LLGH Sbjct: 273 PDTGTRYQDVKRSFATACRRAAI-----MNFHFHDLRHTFASHLVMNGVDLTTVSRLLGH 327 Query: 354 KTQQQTDRY 362 K+ T RY Sbjct: 328 KSLTMTLRY 336 >UniRef50_D2LK83 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LK83_RHOVA Length = 352 Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 95/268 (35%), Gaps = 27/268 (10%) Query: 102 GDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLID 161 + +T + + LRE G I+ + I +L+++ G A + SVL Sbjct: 85 RGLASSTKRTYGGVIEALREAHGGMPIAGLKREHIKKLIEKKALEGGACAANRLLSVLGI 144 Query: 162 VFKEAQHYGEVPPGYNPALATKQPR-RKITRQRLSLEEWKKIFDIADATHRYMGNAMLLA 220 + A G + NPA K+ + R I + +E R A L Sbjct: 145 LLDVALDAGLIET--NPARTVKKLKHRAIGFHTWTEDEVAAFRAHWAIETR-QRLAFELL 201 Query: 221 LVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYA 280 L T QR D+ +M+ + I + + Q+KT + + IPL L A +A Sbjct: 202 LCTAQRSSDVRQMRTAQIAGGCVALSQQKTHAPLRIPLLPELQA-------ALAAAPVIG 254 Query: 281 VSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLY 340 LV + G + KA A + + H R + R Sbjct: 255 AETALVTQY--------GRAFTEKGFGLFIKKACVAAGLTHC-----SAHGLRKAAARRL 301 Query: 341 KEQGLDTQKLL---GHKTQQQTDRYHDD 365 E G ++ GH T ++ +RY + Sbjct: 302 AEAGCTVHQIAAITGHATLREIERYTKE 329 >UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ50_PELPD Length = 427 Score = 95.2 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 104/302 (34%), Gaps = 35/302 (11%) Query: 44 NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGD 103 + EA IA ++ + LA ++ + ++D + I G Sbjct: 69 DAREAFDIA-----KVKLKNGIDPLAELEQARLDRKHTPFVKEFVDEFIRIYCKENNRG- 122 Query: 104 IRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDV 162 +K+ + + + R G + ++ + RD+ +LDE G P MA + + + Sbjct: 123 -----WKEIERALKSEIVPRWGKRKLTDIKRRDLVLVLDEIKERGAPVMANRILAYTRKM 177 Query: 163 FKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADA--THRYMGNAMLL 219 F A + NP L +P + +R+R LS +E K + D + A+ L Sbjct: 178 FSWALERAALE--VNPFLMMSRPNDETSRERVLSEKEIKTFWHNLDECKMSDSIKRALKL 235 Query: 220 ALVTGQRLGDISRMKFSDIWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCR 277 LVTGQR G+I M ++I + + + K + L++ + + Sbjct: 236 ILVTGQRPGEIIGMHRNEIDGEWWEIPAARSKNKQAHRVFLTITAKQLIGDASGFIFESP 295 Query: 278 DYAVSA--------------YLVHFFRSTSQAERGAQVKANTLTMNF--SKARDLARIDW 321 + H + ++V +F R A W Sbjct: 296 ANPAKPDETPPKPAKPYEVRTMTHDIKQNLPHTPHSKVIDRLKVPHFTPHDLRRTAATRW 355 Query: 322 GE 323 E Sbjct: 356 AE 357 >UniRef50_A3DCS0 Phage integrase n=6 Tax=Bacteria RepID=A3DCS0_CLOTH Length = 506 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 108/321 (33%), Gaps = 49/321 (15%) Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVR 134 + ++ +L + + R+ R TY + + K ++ D+ Sbjct: 167 ATDEVSVLFVDFLLEWLEMMRTRV-----RETTYASYNSGIRQSIIPYFMDKKLTLTDIE 221 Query: 135 DIAQLLDEYIAA-----GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR-K 188 + + L ++ P + + + A H G + NPA ++P++ Sbjct: 222 ENPKYLQDFYQHELSKGLSPNSVLRRHANIRKALQHAFHLGLIKS--NPADRIERPKKQD 279 Query: 189 ITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--------- 239 T + EE K+F A + ++LA G R +I +++ I Sbjct: 280 YTASYYTDEELAKLFKAAKGDP--LELPIVLAAYYGLRRSEIIGLRWDAIDFNPDDPKIT 337 Query: 240 -----------DDHLHVIQEKTGSKIA-----IPLSLRLNAINWSLRDVVARCRDYAVSA 283 D +VI EK G+K +PL + + + + R S Sbjct: 338 IQFTVTEVNFGDGQGNVIIEKEGTKSKASKRTLPLVKPIADLLLQKKKDIENNRRLCGSC 397 Query: 284 YLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ 343 Y + E G ++K N ++ +F+ + + FH+ R L Sbjct: 398 YNDKYLDFVHVNEIGERMKPNYISQHFALLLEKHGLK-----KIRFHDLRHSCASLLYAN 452 Query: 344 GLDTQKL---LGHKTQQQTDR 361 G+ +++ LGH T Sbjct: 453 GVSLKQIQEWLGHSDISTTAN 473 >UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UGI0_METS4 Length = 413 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 66/364 (18%), Positives = 122/364 (33%), Gaps = 29/364 (7%) Query: 8 NNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGT----NEAEAIAIATEANTRLAEQ 62 + ++P LY + K + RY+ + +G + + A A +A ++A + Sbjct: 21 PDATLPGLYLIVQPSGKKSWAIRYRINRQPRKFTIGPYPLFDLSAARERARQA-LQMAAR 79 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRY-QAIQDDRLKSG--DIRLNTYKQKAKPVSLL 119 A + S + Y + + K G + + + Sbjct: 80 GLDPYREKKAAEAAAIEAKDQVSRVVATYVERHLKVKGKPGYAEQAEGLLRNH------V 133 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 G + I + D+ L+D G A V + +F A + P Sbjct: 134 LPHWGHRRIGDIGRADVIALVDGLTDRGMTTGANRVFATTRALFNFALGRDLITST--PF 191 Query: 180 LATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 L K P +R R LS E + + A+ G + L L+TG R + M +S++ Sbjct: 192 LGLKPPLPNPSRDRVLSDAEVRWAWLCAERIGFPFGPMVQLLLLTGTRRNETGEMVWSEL 251 Query: 239 WDDHLHVIQEKTGSKIAIPLS--LRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 D + I G++ L + L + V R + + S Sbjct: 252 -DGTVWTIP---GARTKNSLEHVVPLPPAAIEILAAVPRIAGRPGYVFTRNGSTPASDLS 307 Query: 297 RGA-QVKANTLTMNFSK-ARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLL 351 G +++A LT+ S+ AR T H+ R + G D + +L Sbjct: 308 AGKRRLEAAMLTVAQSEAARRGEDPKAVTIPRWTLHDLRRTAASGMARLGTDPHVVEAVL 367 Query: 352 GHKT 355 H++ Sbjct: 368 NHRS 371 >UniRef50_B9MR26 Integrase family protein n=2 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR26_ANATD Length = 400 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 64/390 (16%), Positives = 127/390 (32%), Gaps = 54/390 (13%) Query: 1 MAARPRKNNVSVPNLYPLYSR--KVNKVYWRYKHPVTGKFHALGTNEAE-AIAIATEANT 57 M + +K + ++Y R ++ + + G E A IA N Sbjct: 1 MPTKTKKRGNNEGSIYKRKDGLWCGQITIGRDENGRQKRQYFYGKTRQEVAEKIAKTLND 60 Query: 58 RLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 T WL+ + K +R +T+K + Sbjct: 61 LANG-------------VYVDPAKTTLKDWLNTWL----WEYKKQTLRPSTFKDYLCYIE 103 Query: 118 L-LRERAGMKLISAVDVRDIAQLLD-EYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG 175 + G + + + L + +Y + + +VL +A G V Sbjct: 104 RHINPAIGHYKLKDLRPEHLQALYNAKYQEGLSISTIKQIHTVLHSALDQALKNGLVNRN 163 Query: 176 YNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 + A + + K + LSLEE ++ + + A L+ L +G R+G++ +++ Sbjct: 164 VSEATTLPKGKPKREIRILSLEEQQRFIAALEGER--LKTAFLVELASGLRIGELLALRW 221 Query: 236 SDI--WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS 293 D+ D ++ V + +I + + A+ + A R + ++ + Sbjct: 222 KDVNFKDGYIEVRRSLQRVRIFDGGNSKKTALAFQEPKTEAGKRIVPLPPVIIEELKQHR 281 Query: 294 QA---------------------ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQ 332 + E G + F + R+ A +D FH Sbjct: 282 KKQLEEKLKAGALYEDNDLVFATELGTPIDPRNFERLFYRIREKAGLDKSVN----FHAL 337 Query: 333 R-SLSERLYK--EQGLDTQKLLGHKTQQQT 359 R + + RL + E Q+LLGHK T Sbjct: 338 RHTYATRLLEANEHPKVVQELLGHKDISTT 367 >UniRef50_A3PPX4 Phage integrase family protein n=7 Tax=Alphaproteobacteria RepID=A3PPX4_RHOS1 Length = 360 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 89/257 (34%), Gaps = 29/257 (11%) Query: 104 IRLNTYKQKAKPVSLLRERAGMKLISAV-DVRDIAQLLD--EYIAAGRPRMAQVVRSVLI 160 + T + + + G + A+ D R + LD + + R A SVL Sbjct: 75 LAPTTKAGYIRHIRQIEAEFGDMPLKALADPRVRGEFLDWRDRLGQKSKRSADYAFSVLA 134 Query: 161 DVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLA 220 + A ++P NP + + E +I D + + LLA Sbjct: 135 LILAWAYDRRKIPS--NPCEKPGRLYAGSRADDIWTE--SQIAAFLDKAPKPVRLPFLLA 190 Query: 221 LVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYA 280 + TGQR DI ++ +S + + Q KTG + IP + LR+ + + Sbjct: 191 IWTGQRQADILKLTWSAYDGQVIRLKQSKTGRHMVIP-------VARQLREALDAAKARR 243 Query: 281 VSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLY 340 + + + RG ++ +F KA+ A I TFH+ R + Sbjct: 244 KTLTIC-------ETSRGQPWTSDGFKTSFGKAQAAAGI-----EGVTFHDLRGTAVTFL 291 Query: 341 KEQGLDT---QKLLGHK 354 G L GH Sbjct: 292 ALAGCSVPEIAALTGHS 308 >UniRef50_A5L0D7 Site-specific recombinase, phage integrase family protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L0D7_9GAMM Length = 375 Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 63/367 (17%), Positives = 133/367 (36%), Gaps = 52/367 (14%) Query: 8 NNVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + V LY +V++ R++H + H LG+ A + + R A + Q Sbjct: 24 YDTKVSTLYLRVYPSGRRVFFVRFQHNGLRRNHKLGS--------ALDYSLRQARREALQ 75 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGM 125 ++ +IT + + + NT K+ L + G Sbjct: 76 VVQQVRSPKMETLPSITLQAFGQEFFKRY-----PRHWKPNTLKKNESAFRLQIAPYLGD 130 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 + + ++ D+ Q + + A +L + ++ + + P NP K+ Sbjct: 131 REVQSIVRSDVEQWFTQL--SHVKGSANQALVLLSVMMQQCEAWEYRPKNTNPCRGFKRY 188 Query: 186 RRKITRQRLSLEEWKKIF---DIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 + + LS +E ++++ D + + + L + TG R ++ +++ + H Sbjct: 189 KAGEVERYLSKDELRQLWRVLDTLEGDNPAKVMIIRLLIYTGCRSSEVRTLQWKEYRGGH 248 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 H++ KTG+K ++ L + + D S YL +T + Sbjct: 249 WHLLDSKTGAK-----TVYLCSQVRAYLDAWQSE-----SHYLFPAPCNT------KPIS 292 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ-------KLLGHKT 355 N L + + +AR LA + H+ R Y + ++ +LLGH Sbjct: 293 TNQLGIFWRQARQLAGL-----EGVRLHDLR----HTYASIAIQSKVNLIVLSRLLGHAE 343 Query: 356 QQQTDRY 362 + T +Y Sbjct: 344 AETTLKY 350 >UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=root RepID=B3T0I4_9ZZZZ Length = 422 Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 106/311 (34%), Gaps = 51/311 (16%) Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDI 136 T + +RY K + ++ K K + + G + +++V DI Sbjct: 99 DKNKPTVAELCERYLEDYAKEHK----KPSSLKSDQKNIENHVLPLLGREFVASVTFADI 154 Query: 137 AQLLDEYIAAGRPR-----------------MAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + R +A ++L +F A+ +G G NP Sbjct: 155 DRFKRAVKDGKSSRERKPEHQGGPNVTGGKGVANRCLALLSKMFNLAERWGWCSVGSNPC 214 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIA---DATHRYMGNAMLLALVTGQRLGDISRMKFS 236 + + LS +E + ++ ++ + Y A+ + + TG RLG+I ++++ Sbjct: 215 RHVDRYPENKREKFLSDKELAALAEVLNKSESENPYAVAAIRMLIFTGARLGEILHLEWA 274 Query: 237 DIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 + + L + KTG K ++ DV+A + +++ + S Sbjct: 275 HVDMERAMLLLPDPKTGQKAVF--------LSAPALDVLANLPHMKNNPHVICGEKDGS- 325 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLL 351 L + + R A ++ H+ R + GL KLL Sbjct: 326 -------HLVNLQKPWGRIRKRAGLEDVR-----LHDLRHSFASVAASGGLSLPMIGKLL 373 Query: 352 GHKTQQQTDRY 362 GH T RY Sbjct: 374 GHTQAATTARY 384 >UniRef50_A4TWM2 Phage integrase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWM2_9PROT Length = 387 Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 69/355 (19%), Positives = 112/355 (31%), Gaps = 48/355 (13%) Query: 24 NKVYWR-YKHPVTG-KFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGK- 80 +W Y P + +G ++ A R + R +A+S A K K Sbjct: 42 GITFWCKYTDPAGRSREVKIGKAADISVEQA-----RRKAKELRAQVALSGDPAGDKDKH 96 Query: 81 --AITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDI 136 T ++ ++Y DRL+S Y + L G K + + DI Sbjct: 97 RAVPTFKAFVTEQYLPFAKDRLRS-------YSDQESMCRLRLIPTWGAKRLDEIRTTDI 149 Query: 137 AQLLDEYIAA-GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLS 195 +L P ++ VF A + G NP + R + L+ Sbjct: 150 VELQRRLRDENLSPSTVNRHVALAKRVFNLALRWQA-YEGRNPCQHVEFAREHQRERFLT 208 Query: 196 LEEWKKIFDIADATH-RYMGNAMLLALVTGQRLGDISRMKFSDIWD-DHLHVI---QEKT 250 +E +++F D R N + L +TG R + +F DI + + + + K+ Sbjct: 209 PDEMRRLFQALDDEPSRSAANCIALLALTGARKSEALNARFDDIDLPNRVWTVPASRSKS 268 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 G IPLS + L +L S E + Sbjct: 269 GKVRRIPLSEAAVKLLVGL-------PPEPDCPWLFPNAASDGPIENIRRCWN------- 314 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRY 362 R A + H+ R L G Q +LGH + T RY Sbjct: 315 ---RLKAAATLPSDTRP--HDLRHSFASLLVGSGQSLYSVQTILGHASPNMTARY 364 >UniRef50_Q2NBN0 Site-specific recombinase, phage integrase family protein n=3 Tax=Erythrobacter RepID=Q2NBN0_ERYLH Length = 398 Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 111/317 (35%), Gaps = 43/317 (13%) Query: 58 RLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 Q R RI ++ A + + DR+ L T+ + Sbjct: 89 IAYAQVGRDPATERQRIRSAPSFADFVTEYWDRWAPRWKAS------TLETHTGYRRR-- 140 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 L + I ++ + + P + +L + +A+ +G N Sbjct: 141 YLDDAFVGVYIDELNEGHVTSWFADLNNLTGPGASNRTFEILKHMLNKAEDWGYRLENTN 200 Query: 178 PALATKQPRRKITRQRLSLEEWKKI-------FDIADATHRYMGNAMLLALVTGQRLGDI 230 P + + R++ + L+ +E ++ D T + G A+ L L+TG R +I Sbjct: 201 PCRSVRPNRKRQCERFLTNDELARLGAELTNLRASEDRTKQCSGAAITLLLLTGCRKSEI 260 Query: 231 SRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCR--DYAVSAYLVHF 288 ++++DI + LH+ KTG + + + R+V+A + + + Sbjct: 261 LTLEWTDIKGNRLHLRDSKTGPRTV--------WLGSAAREVIAALPRFERIPYPFWNYR 312 Query: 289 FRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERLY--KEQGL 345 +R + G + + RD A + H+ R + + KE Sbjct: 313 YRKPLRCVNG----------FWRRLRDEAGLPDVR-----IHDLRHTFASHAAMNKETLP 357 Query: 346 DTQKLLGHKTQQQTDRY 362 +LLGH Q T RY Sbjct: 358 MIGRLLGHANVQTTARY 374 >UniRef50_A8MGP9 Integrase family protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MGP9_ALKOO Length = 369 Score = 94.1 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 61/329 (18%), Positives = 119/329 (36%), Gaps = 45/329 (13%) Query: 60 AEQRTRQILAISDRIATSKGKAITTST----WLDRYQAIQDDRLKSGDIRLNTYKQKAKP 115 AE++ +IL + IT WL+ Y ++ TY + Sbjct: 39 AEKKLPEILQQLNTNTFVDTNNITLRDYMQLWLEDYAK--------PNVAPTTYDKYTYA 90 Query: 116 VSLLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPP 174 + + E G + + I QL+++ + P VL +A + + Sbjct: 91 ANKVSEILGNMKLQQIKPIHIQQLVNKLNNSDVTPSTVLSYYRVLNTAINQAVKWQFIQ- 149 Query: 175 GYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRM 233 YNP +A PR + L +E + + D + + ++LAL+ G R G+I + Sbjct: 150 -YNPCVAVTPPRNTKNKMMILDQDEIQILLD--KSKDHVLYPVIVLALLCGLRRGEILGL 206 Query: 234 KFS--DIWDDHLHVI-------------QEKTGS-KIAIPLSLRLNAINWSLRDVVARCR 277 ++ D + +H+ + KT + + A+ +S + + ++ + Sbjct: 207 QWENIDFFSGVIHLENNLVMANNESILKETKTSTGRRAVDISSNVVEVLKKVKKQKMSYK 266 Query: 278 DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSE 337 S+Y H E G + + + F+K A + FH+ R Sbjct: 267 LLYGSSY--HDSNFVCTWEDGRPFRPDYIPKAFAKILVSANL-----PKIRFHDLRHTHA 319 Query: 338 RLYKEQGLDT---QKLLGHKTQQQT-DRY 362 + + G+ Q+ LGH + T D Y Sbjct: 320 SILLKSGIHPKVVQERLGHSSISITLDTY 348 >UniRef50_A1K6M5 Site-specific recombinase, phage integrase family n=1 Tax=Azoarcus sp. BH72 RepID=A1K6M5_AZOSB Length = 358 Score = 94.1 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 103/298 (34%), Gaps = 47/298 (15%) Query: 83 TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDE 142 T ++Y+ D LKS ++ + ++ R+ G ++ V IA+ D Sbjct: 61 TLHELAEKYEQAVADSLKS-------FEARRGHLAYWRQAFGSSALADVSPALIAEHRDR 113 Query: 143 YIAAGRPR------MAQVVRSVLIDVFKEAQHY-GEVPPGYNPALATKQPRRKITRQR-L 194 R + L +F A V NP ++ R R L Sbjct: 114 LTKRTTERGTVSLATVNRYIATLSALFTFAVKELQWVE--ANPVERVRKFGESPGRVRYL 171 Query: 195 SLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI----QEK 249 S +E + ++ + Y+ A++LAL TG R +I+ +++ + ++ + K Sbjct: 172 SDQERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETK 231 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 G+ +PL+ + L V D + T Sbjct: 232 NGAGRVLPLTGEALDLLRDLAKVRDIRDDRVFPV--------------------ASTTRA 271 Query: 310 FSKARDLAR--IDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRY 362 F+ + + S +H+ R + G ++ K+LGHKT Q T RY Sbjct: 272 FNSIKGAWDGAVKRAGISDFRWHDLRHTAASYLTMAGIGSMEVAKVLGHKTLQMTARY 329 >UniRef50_C6NU13 Site-specific recombinase, phage integrase family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU13_9GAMM Length = 390 Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 123/338 (36%), Gaps = 41/338 (12%) Query: 44 NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRY-QAIQDDRLKSG 102 + EA+ A + RL Q Q+ + + +T +RY + I + Sbjct: 29 TKREALQWAAQVEARLETQTPAQVYKKVE------VRELTLKAAFERYTREILPSKAPRT 82 Query: 103 DIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEY-IAAGRPRMAQVVRSVLID 161 R ++ Q R + +D +AQ + +++ +VL Sbjct: 83 SRREHSLIQWWS-----RSLWQAVPLPNLDGPQVAQAIRAMEKENRSANTIRLMLAVLSH 137 Query: 162 VFKEAQ-HYGEVPPGYNPALATKQPR-RKITRQRLSLEEWKKIFDIADATHRYMGNAMLL 219 ++ A+ +G V NP ++PR + +R E ++ + + + + +++ Sbjct: 138 LYTIARKEWGYV-DLINPVELVRKPRLPEGRDRRFVGNEEDRLLEACARKNPELADLVIV 196 Query: 220 ALVTGQRLGDISRMKFSDI--WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCR 277 AL T R G++ + + I D + + E T ++ R ++ D + R R Sbjct: 197 ALETAMRQGEVFTLTWDRISFTDHTIKLPPELTKTR-----KGRTVPLSERAEDALKRQR 251 Query: 278 DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSE 337 + + + + +F KA +A + FH+ R + Sbjct: 252 AR----------HNGHGNRVWSYATQDGVRASFFKAVKVAGL-----EDFHFHDLRHEAT 296 Query: 338 RLYKEQGLDT---QKLLGHKTQQQTDRYHDDRGKGWSK 372 + E+GL+ Q + GHKT Q RY GK + Sbjct: 297 SRFFERGLNAAVVQGITGHKTAQMLARYTHLSGKSLVE 334 >UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KUI7_METC4 Length = 414 Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 87/247 (35%), Gaps = 13/247 (5%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGT----NEAEAIAIATEAN 56 R + ++P LY + K W ++ GK LG A+A A A Sbjct: 18 KRREVPDAALPGLYLVVQPAGGKS-WAVRYRAAGKPRKLTLGPYPRLGLADAREAARTAL 76 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 +AE R + R+ + + + Y + K + + Sbjct: 77 HAVAEGRDPAGEKQAARVEVAAVQTMRFGAVAADY---IERYAKPRNRSWRETESFLTRT 133 Query: 117 SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 ++ K + A+ +D+ LD +A G A + + L F G + Sbjct: 134 LDATDKWQEKDVRAIGRKDVRDALDAVVARGASIHANRLFAALRRFFAWTVERGIL--DA 191 Query: 177 NPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 +P K P +I+R R L+ E ++ A G + L ++TGQR ++ ++ Sbjct: 192 SPMAGLKPPSPEISRDRVLTDAELVAVWKAAGEVGYPFGPVVQLLILTGQRRSEVVEAEW 251 Query: 236 SDIWDDH 242 + D Sbjct: 252 REFDLDG 258 >UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMV7_CALS8 Length = 332 Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 107/321 (33%), Gaps = 21/321 (6%) Query: 49 IAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNT 108 + + N +L I + + +IT ++D + + S ++ +T Sbjct: 3 VEQLNQLNIEELIITLENVLKILKQYSKVSNSSITFKEFVDYWF----EAYASTAVKPST 58 Query: 109 YKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQH 168 K+ + + G K ++ V DI + + +L ++FK AQ Sbjct: 59 QKRYRQLLKPALRAIGNKPLNKVKPLDIQNIYIALAGTQSNCTILKLHRLLHEIFKHAQM 118 Query: 169 YGEVPPGYNPALATKQPRRKITRQRL-SLEEWKKIFDIADATHRYMGNAMLLALVTGQRL 227 + + NP P + + +E K+ +I Y L+AL TG R Sbjct: 119 WEYISD--NPVKKVVPPTPEKKVFDVWDVETAKRFLEIIKDEPIYYPA--LIALHTGMRA 174 Query: 228 GDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWS----LRDVVARCRDYAVSA 283 G+I +K+ D+ + + K+ K ++ L + D++ + Sbjct: 175 GEILSLKWCDVNFETRVISIVKSERKNRGLKTVNLKTKTSKRAVYMNDILYKELKNLYEI 234 Query: 284 YLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ 343 + N L+ F K FH+ R L Sbjct: 235 TKPKPDDFVCPRLPTGNLTVNYLSRKFKKLVKKHNFPLIR-----FHDLRHTFATLMLSL 289 Query: 344 GLDTQ---KLLGHKTQQQTDR 361 G++T+ ++LGH + T Sbjct: 290 GVNTKIVAEILGHSDIKLTAD 310 >UniRef50_A4EGP6 Putative integrase n=1 Tax=Roseobacter sp. CCS2 RepID=A4EGP6_9RHOB Length = 345 Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 91/261 (34%), Gaps = 31/261 (11%) Query: 104 IRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIA--AGRPRMAQVVRSVLID 161 + + ++ + ++L+ ++ G I D ++ + R A +VL Sbjct: 78 LSDASKREYKRYLTLISQKFGKAPIDIATRNDAIAAYRQWHRSMQDKQRTANYALAVLKK 137 Query: 162 VFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKK--IFDIADATHRYMGNAMLL 219 + A G NP K +RK R + W K I ++ N Sbjct: 138 LMAWAVDSGN--TTTNPTAQIKPIKRKGKSTRRDI-IWTKDQINHFNTVAGCHVKNPFNA 194 Query: 220 ALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDY 279 AL+T QR DI M + D + + Q KTG + I + L I D + R + Sbjct: 195 ALLTSQRKKDIIEMTWDAYDGDTIKIRQSKTGKDVWIKVPEELKCI----LDGLDRTHER 250 Query: 280 AVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERL 339 L G + +F A+ A+++ TFH+ R + L Sbjct: 251 VFLNSL------------GQPWTLDGYDSSFRAAKIAAKVN-----GVTFHDTRGTAVTL 293 Query: 340 YKEQGLDTQK---LLGHKTQQ 357 G ++ + GH ++ Sbjct: 294 AYIGGASFREISLMSGHSERE 314 >UniRef50_D0WGY0 Putative phage integrase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGY0_9ACTN Length = 353 Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 100/282 (35%), Gaps = 33/282 (11%) Query: 100 KSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSV 158 +SG I +T + L+ G +S ++V ++ + + G P+ + Sbjct: 25 RSGAIERSTVRDYHAVARLIVRYIGTCTVSDMEVMAVSDWMASMVRDGYAPKTCSKAFRL 84 Query: 159 LIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR---LSLEEWKKIFDIADATHRYMGN 215 L K A G + NP K PR+ R R L E ++ +A +G Sbjct: 85 LSQALKFAVGQGAI--DKNPCDFCKPPRQ--IRSRFIALDRAERSRMLYLARQDDSPLGF 140 Query: 216 AMLLALVTGQRLGDISRMKFSDIW--------------DDHLHVIQEKTGSKIA-IPLSL 260 A+ +AL TG R G++ +K+SD + ++ + K+ S I IPL+ Sbjct: 141 AIEIALTTGMRRGEVCALKWSDFSSRGTLTVRRALGNAEGGFYIKEPKSLSGIRTIPLAS 200 Query: 261 RLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARID 320 N L+ SA + ++ + L RD A+ Sbjct: 201 DTNEALGRLKGAFLEANRSEGSASADGYIVGAGESG-DQPYNPDRL------GRDFAQFC 253 Query: 321 WGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQT 359 G TF + R G+D + LLGH T Sbjct: 254 RDNGFECTFRDLRHTFATFMVGAGVDVRTVASLLGHANVAMT 295 >UniRef50_Q0F389 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=Q0F389_9PROT Length = 331 Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 109/322 (33%), Gaps = 34/322 (10%) Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 +L E + L D + T + L+RY R K ++ + + Sbjct: 37 AQLFEAEVKTKLQRGDFVDTRLAERTLFGEALERYAENIVPRKKGARQEMSRVRTLS--- 93 Query: 117 SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 R +S + DI + D + P ++ +V+ +F A + Sbjct: 94 ---RSSLVRLPLSKIRTPDIIKYRDSRLKEVGPNSVRLELAVISHLFTVASRDWGMNYLS 150 Query: 177 NPAL--ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 NP ++ +RL E ++ +G+ ++ AL T R +I+ ++ Sbjct: 151 NPVARGVMPSVKQTARDRRLQPGEEDQLMQACKEYGGVIGDIVMFALETAMRRAEIASLR 210 Query: 235 FSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 + DI + + K G + +PLS R I V + Sbjct: 211 WEDIHGNIARLHDTKNGERRDVPLSSRAREIIHRRAKVRSLNDKRVFG------------ 258 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLL--- 351 + N ++ FS+ A I FH+ R + E+GL+ ++ Sbjct: 259 ------IAPNGISQAFSRVCKHAGIVDLR-----FHDLRHEATSRLFERGLNPMQVASIT 307 Query: 352 GHKTQQQTDRYHDDRGKGWSKV 373 GHKT Q RY R + + Sbjct: 308 GHKTLQMLKRYTHLRAEDLVAL 329 >UniRef50_C5SDM2 Integrase family protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SDM2_CHRVI Length = 398 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 65/365 (17%), Positives = 121/365 (33%), Gaps = 38/365 (10%) Query: 9 NVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIA-TEANTRLAEQRTRQ 66 + P K + Y+ + +GT + A +A LA+ T+ Sbjct: 25 DDDPPGFGLRIYPSGRKAFVLSYRSQGRKRLMTIGTYGVLTLDQARIQARAELAKVETQG 84 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMK 126 ++ R ++G+ T Y + G + + + + L G Sbjct: 85 ADPLAVRQRQAQGE--TFRDLCQTYME------RHGQAKKSGTDDQRRIDRHLLPLWGSL 136 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG-YNPALATKQP 185 + AV D+A L + I P A V ++L +F A+ +G VP G NPA + Sbjct: 137 KVPAVTRADVAALHSK-IGKAHPYEANRVLALLSKMFDLARRWGFVPEGHPNPARDIDRF 195 Query: 186 RRKITRQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDH 242 + + ++ EE ++ + ++ + L L+TG R ++ R ++ D+ Sbjct: 196 KEAKRDRWVTPEELPRLAQAINEEPNQSARFGLWLYLLTGARKSELLRARWDDVDWTRAE 255 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 L + K G IPLS A+ + V H Sbjct: 256 LRIPDTKAGRVHYIPLSAAALALLREIPRVAGNPHILPGKLDGAHLVN------------ 303 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQT 359 + + + R A ++ H+ R + G ++L H Q T Sbjct: 304 ---INKPWDRVRRAAGVEDVRV-----HDLRRTVGSWLAQAGNSLHLIGRVLNHSNQSTT 355 Query: 360 DRYHD 364 Y Sbjct: 356 AIYAR 360 >UniRef50_Q984J9 Integrase n=1 Tax=Mesorhizobium loti RepID=Q984J9_RHILO Length = 343 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 93/279 (33%), Gaps = 33/279 (11%) Query: 83 TTSTWLDRYQAIQDDRLKS-GDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLD 141 T T +DR+ +D R + T L++E+ + + + + Sbjct: 60 TLETLIDRFTGPEDKRNPDFLALADTTQTDHLYAFRLIKEKWPKLPVRLTQQKGMKAEIR 119 Query: 142 EYIA--AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL-SLEE 198 ++ A PR A + L VF A + NP ++ R+ + S E+ Sbjct: 120 KWHRSFAANPRKADKLLFSLSKVFSYAVADELI--DKNPCTGIERLYNGSRRESVWSQEQ 177 Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPL 258 K A ++ A +AL TGQR GD+ + D +L Q K G K+ + + Sbjct: 178 IKAFRAGA---PAHLLLAFEMALHTGQRQGDLLSRSWKDYDGIYLQFRQSKGGKKLKVRV 234 Query: 259 SLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR 318 +L A+ DV+ + + + + + Sbjct: 235 HSKLKAM----LDVLDKDKMRILLNSRKRPWTKDGFKTSWGK-----------------E 273 Query: 319 IDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLGHK 354 + TFH+ R +G D K+ GH Sbjct: 274 CTRLQIEGVTFHDLRGTFITERAREGSSVEDIAKISGHS 312 >UniRef50_B1B8Q2 Phage integrase n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B8Q2_CLOBO Length = 366 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 114/311 (36%), Gaps = 30/311 (9%) Query: 69 AISDRIATSKGKAITTST--WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMK 126 A+++ I + +I T+ + Y + + +TYK+ + + G Sbjct: 43 ALAELINQIEKGSIITNDKMTVKEYIEYWLETYPKNNCSPSTYKRYKFFIKDIINYIGKH 102 Query: 127 LISAVDVRDIAQLLDEYIAAGR--PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 +S ++ I + ++ ++ +L K AQ + + NP Sbjct: 103 KLSKLNPMIIQKFYEDLLSDRNISNNTVIKTHRMLHLALKHAQQWQLI--NNNPCDLVTP 160 Query: 185 PRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 P+ + +E DI ++ A+ LA+ TG R+G++ +K+SD+ Sbjct: 161 PKATKQEMKYWQPDEINIYLDIL--KEEFLYPAIFLAIQTGCRVGELCAIKWSDVDLIDK 218 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDV------------VARCRDYAVSAYLVHFFRS 291 + +KT +I L+L+ S+R + + + R Y + Sbjct: 219 TIRIDKTLQRIDCKLALKYPKTQNSIRTITLLETAITFLKNLKKNRIEKKLKYGI-ELDY 277 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ--- 348 E G + + ++ +F K D + FH+ R L + G++ + Sbjct: 278 VLCWEDGRPIDPHYISQHFPKLLDKYNL-----PKIRFHDLRHSHATLLLKAGVNAKIIS 332 Query: 349 KLLGHKTQQQT 359 K LGH T T Sbjct: 333 KRLGHSTVAFT 343 >UniRef50_A3SHG9 Phage integrase n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SHG9_9RHOB Length = 412 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 57/328 (17%), Positives = 117/328 (35%), Gaps = 35/328 (10%) Query: 44 NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGD 103 ++ + + +L E + +A +K +++ W+D + A D+ Sbjct: 84 DKDGRETLDLVLSDQLEELYEQNPIAADTFYHLTKCQSVNLGDWIDEWLATLDN------ 137 Query: 104 IRLNTYKQKAKPVSLLRERAG-MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDV 162 T K V E L+ +VR A ++ +P + + + Sbjct: 138 -VPKTIDMKRSDVLRFVEAFPYSHLVKKAEVRRWA-YETQHRENLKPATVRRIITHCRGY 195 Query: 163 FKEAQHYGEVPPGYNP----ALATK---QPRRKITRQRLSLEEWKKIFDIADATH-RYMG 214 ++ Q V +P + + R + R S E+ K+ A A + + Sbjct: 196 WRYLQRKAYVTGEDDPFADAVERKRSRTKARVEEARGDFSREDVVKLLAAAKALPDQQLH 255 Query: 215 NAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVA 274 + + + + TG R+ +I +K S++ +D L + K+ + R+ I+ L + Sbjct: 256 DLITIGMWTGCRIEEICSLKLSEVKNDRLLITDAKSSA------GNRVIPIHPQLAPTLQ 309 Query: 275 RCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRS 334 R R + Y++ +R +N + FS+ + G FH R Sbjct: 310 RLRRDSSDGYVLSGLTFNKYGDR-----SNAVGKRFSRLKTKMGF----GGSYVFHSVRK 360 Query: 335 LSERLYKEQGLD---TQKLLGHKTQQQT 359 L + G+ +LGH+ Q T Sbjct: 361 TVATLLENAGVPENIAADILGHEKQTMT 388 >UniRef50_Q8XZ52 Putative integrase/recombinase protein n=1 Tax=Ralstonia solanacearum RepID=Q8XZ52_RALSO Length = 354 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 132/339 (38%), Gaps = 30/339 (8%) Query: 33 PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQ 92 P+ K EAEA ATE + ++ + A + IA K + + L R+ Sbjct: 26 PIASKVFP-SREEAEAWIQATEPELQARSRQAARQQAQAKLIAKFKDRPRIVADLLHRH- 83 Query: 93 AIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRM 151 ++ +R + + +S +LR + + DI + D+ + P Sbjct: 84 ------MQEETVRKKGAEAETHHISSILRYPLARIHLDNLTRSDIKEWRDQRLQDVAPST 137 Query: 152 AQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADAT- 209 +++ K A H +V + + ++P R +RLS EE + + T Sbjct: 138 VNRELNIINAALKVAVHEWDVAICQSVLTSVRRPSNPPGRVRRLSPEEEAALRQAGEETR 197 Query: 210 HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINW 267 + Y+ + LAL T R G+I +++ I H + +I+ K G+ +PLS + Sbjct: 198 NPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLIETKNGTPRGVPLSRHAMKVLA 257 Query: 268 SLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPA 327 +L+ V A ++ G + AN + F++ + A ++ Sbjct: 258 TLKQV-------AAHELGYEGELNSGPVFPG--LTANAFKLAFNRMMERAGLENFR---- 304 Query: 328 TFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYH 363 FH+ R + E+G ++ + GHK + RY Sbjct: 305 -FHDLRHEATSRLFEKGLSVMEVASITGHKDIRMLQRYT 342 >UniRef50_A3UKJ7 Phage integrase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UKJ7_9RHOB Length = 310 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 103/323 (31%), Gaps = 46/323 (14%) Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 A + + +A S + T ++ Y + +T + + Sbjct: 2 AAYAQALANTPLETDLAKSTARKGTIDRLIEDYYH----SSAFDTLETSTQRTYRSSLEP 57 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 R G + V R + ++L + +P A + L +F A NP Sbjct: 58 FRNTYGHMPVRTVQTRHLERIL--FDLREKPTAANKLLKRLKTIFDLAVRQEIRHD--NP 113 Query: 179 ALATKQPRRK----ITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 A K + +E +K + A+ L L TGQR D++RM Sbjct: 114 AKPIKARKVDSDGFHAWTEAEIEAFKTAYPSGSKP----RLALALLLCTGQRGSDVARMG 169 Query: 235 FSDIWD-----DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 DI D + V Q+KT + + IP+ L A+ + R+ ++V Sbjct: 170 PQDIVDIQGGSRAIRVKQQKTKTPLLIPILPEL-AVELAARN----------GKHMVFL- 217 Query: 290 RSTSQAERGAQVKANTLTMNFS-KARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT- 347 E G F+ +A+ T H R E G Sbjct: 218 ----TTEYGKAFSVKGFQQWFAERAKAATG-----NPKCTAHGLRKACAYRLAEAGATVH 268 Query: 348 --QKLLGHKTQQQTDRYHDDRGK 368 Q + GHKT + RY R + Sbjct: 269 MIQSITGHKTLAEVARYTAGRDQ 291 >UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KWK2_METC4 Length = 354 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 57/319 (17%), Positives = 106/319 (33%), Gaps = 32/319 (10%) Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 R + A +R+ + R++ + + +R T L Sbjct: 30 RKTEAQAYLERLLAEQAGRARGDVPRHRFEEAVERYFQETRVRPKTLSSYRSNSRTLAPS 89 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL- 180 + + R IA+ + G + + L + +G + NP Sbjct: 90 FNALHLDEITRRAIAEFVTARKRTGVTDTTIRRDLAFLSVICSACGRWGWL--DTNPVTT 147 Query: 181 -ATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 + R R R L+ E+ ++ A + A+ LA+ TG R ++ + + I Sbjct: 148 FGKRGLREGRPRTRFLTQAEFDRLLAAA---SPSLRPAITLAVETGMRREELFGLTITAI 204 Query: 239 WDDHL--HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 + H+ + KTGS +PLS + L D S+YL + + Sbjct: 205 DLNRREVHLERTKTGSPRRVPLSDKAITTIKGLLD----EPGRPRSSYLFCKGDGSRYCD 260 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGH 353 + F A A++ +H+ R Y ++G D ++LGH Sbjct: 261 ---------MKKGFGGACRRAKVTNMR-----WHDLRHTFASWYVQRGGDLYRLSRILGH 306 Query: 354 KTQQQTDRYHDDRGKGWSK 372 Q T RY R + + Sbjct: 307 SGLQMTARYGHLRVEDLHE 325 >UniRef50_C4FP65 Putative uncharacterized protein n=1 Tax=Veillonella dispar ATCC 17748 RepID=C4FP65_9FIRM Length = 357 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 127/365 (34%), Gaps = 55/365 (15%) Query: 21 RKVNKVYWRYKHPVTGK-FHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 +K ++ + GK + GT + AIA R A + A D Sbjct: 3 KKRADGRYQVSKLINGKRKYFYGTTKKAAIAE------RDAYVESLAQCANYD------- 49 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQ 138 ITT W + + RLK+ + NT + + G + + ++ Sbjct: 50 NTITTERWCEYWI-----RLKTDTVSQNTLSSYQYIIKTYIVPFIGSIRLVELSALNVRA 104 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL-- 196 L+D ++ R +VL + K+A + N A K+P+++ R+ ++L Sbjct: 105 LMDS-MSHLSARTISYTLTVLRAILKQAVMDEIISK--NVATLVKKPKQERKREMVTLSK 161 Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQ------- 247 EE + + D + LA TG R +I + + D+ L V Q Sbjct: 162 EEVETFLEQIDDVEWH--ALFKLAFTTGLRRSEILGLTWDDVNLKQKTLTVNQTVLRIDE 219 Query: 248 ----EKT----GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 KT S+ +I L + A LR V + R A + + Sbjct: 220 VTTISKTTKNSSSRRSISLDDKTIAELLKLRTCVDKRRLKAPNWRNNNLVFPGKFGNPRD 279 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQ 356 K + F+ A I + T H+ R L E G++ Q LGH + Sbjct: 280 PAKVSLKCKKFATA-----IGRPD---FTMHDTRHTHATLLLEAGVNFKVVQMRLGHSSY 331 Query: 357 QQTDR 361 QQT Sbjct: 332 QQTMD 336 >UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FJ84_9BURK Length = 332 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 114/306 (37%), Gaps = 38/306 (12%) Query: 74 IATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDV 133 + T+ + T L +Y +R+ + + + + S+L+ + + Sbjct: 55 VDTAAARETTLGDLLQKYA----ERVSP--TKKSGAGEAKRIQSMLKWFLCKYAVVNITP 108 Query: 134 RDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR 193 +A+ DE + + ++L VF A ++ NP ++P+ R R Sbjct: 109 AVLAEWRDERLQSVSGSTVNRELNLLSHVFSTAMIEWDIHLPVNPVSRIRRPKHNKPRNR 168 Query: 194 LSL--EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQEK 249 + EE +++ A ++++ A+LLA+ TG R ++ +++ +I L + K Sbjct: 169 RTEGGEESLLLYECRKARNKHLYPAVLLAIETGMRRSEVVGIEWPNIDLKRRVLWLPDSK 228 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 G A+ LS R + G + + + Sbjct: 229 NGEGRAVALSTRAAQALAA------------------IATDRNGPVFPG--LTVDAIKCA 268 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYHDDR 366 + +AR A+ID FH+ R + E+G ++ + GHKT RY R Sbjct: 269 YRRARKRAKIDGLR-----FHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHLR 323 Query: 367 GKGWSK 372 + +K Sbjct: 324 AEDLAK 329 >UniRef50_A6X006 Phage integrase family protein n=2 Tax=Alphaproteobacteria RepID=A6X006_OCHA4 Length = 426 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 70/370 (18%), Positives = 129/370 (34%), Gaps = 39/370 (10%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPV--TG--KFHALGT----NEAEAIAIATEANTRLA 60 + + + K KV+ P TG K + +GT +A A E L Sbjct: 26 DSELKGFGVKVTPKNRKVFLVMHRPKGHTGAAKKYTIGTYGEWTVQQARDRARE---VLT 82 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-L 119 E + +R+ + + + +D + LK + T+ + + + L Sbjct: 83 EGSKGNDVGAIERVERQRKSSDILTDLVDEF-------LKKHAAQNKTHDETKRILEREL 135 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + G K I V DI +L+ G P MA V + + + +PA Sbjct: 136 LSKHGKKSIHVVTKHDILSVLEGIRDRGAPYMANRVLAAIRKFMNWCVSRDII--AISPA 193 Query: 180 LATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 P R+++R R L+ +E + A + GN + L +T QR ++ M++S++ Sbjct: 194 NGISLPTREVSRDRVLTADETRAALMAAKSVGYPYGNIVELLFLTAQRRDEVGDMRWSEL 253 Query: 239 WDDH----LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 D + + K G + LS A+ S+ V D S + F + + Sbjct: 254 NLDKATWTIPAERVKNGKAHDVHLSKDALALLHSIPRFV--SADNVESDLV--FTTTGNT 309 Query: 295 AERGAQVKANTLTMNFSKARDL------ARIDWGEGSPATFHEQRSLSERLYKEQGLD-- 346 G TL + + + +P H+ R + G+ Sbjct: 310 PFSGYSKSKTTLDKKMLEVLQKMAEDKGVNPELVKLTPWRLHDIRRTVTTELSKLGVAIH 369 Query: 347 -TQKLLGHKT 355 +L HK+ Sbjct: 370 VADAILNHKS 379 >UniRef50_Q5LLE0 Site-specific recombinase, phage integrase family n=2 Tax=Rhodobacteraceae RepID=Q5LLE0_SILPO Length = 400 Score = 92.5 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 63/359 (17%), Positives = 130/359 (36%), Gaps = 44/359 (12%) Query: 8 NNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIATEANTRLAEQRTR 65 + +P L S K + +K ++GK +G ++A A E ++ + Sbjct: 24 RDELMPGLVLRISTSGTKTFCLHKR-ISGKMRRLTIGRFGVVSLAEARERVRKVLYEIET 82 Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGM 125 DR T + Y K + +K+K ++ + Sbjct: 83 GRF--EDRTGVEVETKPTLGDVIPDYIE------KHAKVHNRDWKRKEALLAKF-AALHV 133 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 K I + D+ + + I P A + L + G + +P K Sbjct: 134 KRIDEIKRADVVKA-CDLIHKSAPVSANRALAHLKHLMGWCVERGMI--DASPIAGMKPL 190 Query: 186 RRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW-DDHL 243 ++ +R+R L+ +E ++ DA G+ M L +++GQR +++ M+++++ + L Sbjct: 191 SKERSRERVLTDDELGALWTACDAEGYPFGDCMKLLILSGQRRAEVAEMRWTELDLEKRL 250 Query: 244 HVI---QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 + + K G + +P++ ++ DV+ R + S Y+ + + Sbjct: 251 WTLPSQRAKNGRQHTVPIT-------DAMIDVLRRVPRFLGSDYVFTTTGKSPVS----- 298 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPA-TFHEQRSLSERLYKEQGLD---TQKLLGHKT 355 F + +D EG+ H+ R G+ T+ LL HKT Sbjct: 299 --------GFGRLKDRLDKALPEGTEPWIIHDLRRTMSTNMAMLGVPQPVTEALLNHKT 349 >UniRef50_B9QSW9 Site-specific recombinase, phage integrase family protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QSW9_9RHOB Length = 347 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 100/315 (31%), Gaps = 44/315 (13%) Query: 62 QRTRQILAISDRIATSKGKAI--TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 Q + L SD + + T LD+Y+ K + T + + + Sbjct: 47 QAYQAALTGSDVPKKPRSRYPQNTLGWLLDQYEQ----SAKFAALAKATRQSYGYQIKAI 102 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 RE++G + + R I + A P A V+ F G + + Sbjct: 103 REKSGSVRLIDITERSIRRA--REARAATPNAANAFLKVMKVAFAWGMESGLLDDVID-- 158 Query: 180 LATKQPRRKITRQRLSLEEWKKI----FDIADATHR---YMGNAMLLALVTGQRLGDISR 232 + P +++ R + E + +A A+ L TG R D+ + Sbjct: 159 ---RDPAKEVKRIDIKTEGHHTWTVEEIERYEARWPLGTMERLALDLLACTGLRREDVYQ 215 Query: 233 MKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 + I +HV KTG I +P+ L D + L + Sbjct: 216 IGRQHIKGGEIHVRASKTGGWIYLPVLPALQE-----------SIDATKTGELTLLLNTK 264 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLL- 351 Q + A F KA + A + P H R + L E+G +++ Sbjct: 265 GQPH----LNAKAFGKWFGKACERAEV------PGRAHGMRKAAATLVAERGATVHQMMA 314 Query: 352 --GHKTQQQTDRYHD 364 G +++ Y Sbjct: 315 IFGWDSERMAIHYTR 329 >UniRef50_Q2NDK6 Site-specific recombinase, phage integrase family protein n=2 Tax=Erythrobacter RepID=Q2NDK6_ERYLH Length = 330 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 107/294 (36%), Gaps = 34/294 (11%) Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVR 134 A K KA + + + + K + +A L R G + A++ Sbjct: 38 APEKLKAPLFAEFAEEFWLDYSPHWKPSTRDAS----RAYIDKRLIPRFGALSVDAIERA 93 Query: 135 DIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL 194 DI + D G VL + + A+ G NP + +R + + L Sbjct: 94 DINRWRDSMADVG--GAFNRSIPVLSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPERYL 151 Query: 195 SLEEWKKIFDIADA---THRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTG 251 S +E++++ + + ++ A+LL + TG R+ +I+ +++ + L + KTG Sbjct: 152 SADEYRRLGKVLAEHNGANAFVVPALLLLIYTGARVSEIATLRWRYVELPRLALPDSKTG 211 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 P ++ LN ++ D + R D + ++ + + Sbjct: 212 -----PKTIYLNPQAIAVLDGLQRRGDDQLVFPAMYREVPINLGQHWE------------ 254 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTDRY 362 K R A + H+ R + +G+ KLLGH + T RY Sbjct: 255 KIRRKAALPDVR-----LHDLRHSFASVAIAKGIPLATIGKLLGHALPETTARY 303 >UniRef50_B7IY65 DNA integration/recombination/invertion protein n=35 Tax=Bacillus RepID=B7IY65_BACC2 Length = 369 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 131/352 (37%), Gaps = 52/352 (14%) Query: 32 HPVTGK----FHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTW 87 P TGK + + + EA A ++I +++ K +T + Sbjct: 21 DPETGKRRQKWFSGYKTKKEAQAD-----------VAKKITELNEGTFIEPSK-VTLKDY 68 Query: 88 LDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQLLDEYIAA 146 L+ + I KS I+ +T+ ++ + GM + ++V I + I Sbjct: 69 LNHWLEI-----KSMSIQKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAINK 123 Query: 147 G-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFD 204 G ++ +L A + NPA + P+++ T Q + EE KK Sbjct: 124 GITNNSILLMHRILKSALNLAVKQNII--SRNPADFAEIPKKEKTSIQTWTEEEVKKFLA 181 Query: 205 IADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--------------WDDHLHVIQEKT 250 + + ++G LLA+ TG RLG++ +++ DI D+ + + Sbjct: 182 HSQESRYHIG--YLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTN 239 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 SK IP+ + ++ + + SAYL + E G +K +F Sbjct: 240 SSKRTIPVPNETIVALKKHKILINKEKLRFGSAYL--DQDLINCNEFGRIIKRAHFRKSF 297 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQT 359 +A I + FH+ R + +QG++ + + LGH T Sbjct: 298 IRATHKVGIKEIK-----FHDLRHTHATILLKQGVNPKIISERLGHTDISMT 344 >UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GWH6_9DELT Length = 394 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 64/374 (17%), Positives = 127/374 (33%), Gaps = 56/374 (14%) Query: 8 NNVSVPNLYPLYSRKVNKVYWR-YKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + VP Y++ Y+ G + IA A Q+ +Q Sbjct: 26 FDSDVPGFIMEVRSTGKSTYYQRYRD-------KFGRLKQARIAPVDSITLEEARQKAKQ 78 Query: 67 ILAISDR------IATSKGKAITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVS-L 118 I + + A T ++ D+Y + ++ Q +K + Sbjct: 79 IRSQTTMGFDPRDEAEKNRNTPTFKEFIRDQYIPYIQ-------VHKRSWDQDSKMLELR 131 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + G +S + D+ Q ++ AG +P +++ +F A+ + + Sbjct: 132 VLPLWGNMKMSEITRDDVQQFQSNFLRAGCKPGTVNRYMALVKYIFNLAEKWDVIEKT-- 189 Query: 178 PALATKQPRRKITRQR-LSLEEWKKIF-DIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 PA + ++R LS EE K++ ++ + + + + + L ++TG R ++ + + Sbjct: 190 PARHISRLEDNNCKERYLSSEETKRLLGELKNCKSQVVPDIIELLILTGARKSEVVNLPW 249 Query: 236 SDIW-DDHLHVI---QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 ++ L I + K ++ IPLS + R + S Y+ ++ Sbjct: 250 QELDLKQGLWTIPPERNKAKTRKTIPLSQGALR--------ILEKRKHNGSEYVFPNPKT 301 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQ 348 + + R A I H+ R L G + Q Sbjct: 302 GGPIKHFHNTWD--------RVRKNAGIPDVR-----IHDLRHNFASLLVNSGRSLYEVQ 348 Query: 349 KLLGHKTQQQTDRY 362 KLLGH T RY Sbjct: 349 KLLGHSNISTTQRY 362 >UniRef50_C6ACZ4 Phage-related integrase/recombinase n=3 Tax=Bartonella RepID=C6ACZ4_BARGA Length = 347 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 59/375 (15%), Positives = 117/375 (31%), Gaps = 54/375 (14%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ 62 +PR P+L + K+ W + +G + I T+ Sbjct: 2 PKPR-----PPHL-VKEVTRHGKIIWYVR---------IGHGKRIRIRG--TYGTQEFVD 44 Query: 63 RTRQILAISDRIATSKGKAITTST----WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 + LA + K K WL + + + T +Q+ + Sbjct: 45 NYKSALAELQGLILPKSKTGKLVEGSFAWL---LKQYFNSVHWHSLAKATKRQRELILMK 101 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + + G + I ++ +P AQ L +F A + NP Sbjct: 102 VCDAIGNIPYREIKKSHITAGVER--RKEKPTAAQNFLKALNGLFNWAIDQELLEN--NP 157 Query: 179 ALATKQPRRKITR--QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 AL K+P + E+ +K + + + + L TG R GD R+ + Sbjct: 158 ALGIKRPPLNNKDGFAVWTEEDVEKYYHHWSHGS-HERVWIDVLLYTGLRRGDAVRIGWK 216 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 D+ D+ +H+ EK+ + + L + L + +L+ + + + Sbjct: 217 DVKDNIIHLKTEKSKFQTDVFLPI-LPELAETLK------IGPIGNETFI-------CGK 262 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGH 353 G ++ + F +A + A I + H R L+ G + + G Sbjct: 263 NGNKLVKESFGNLFREACNAAGI------KKSAHGLRKLAATRAANSGATVSQLKAIFGW 316 Query: 354 KTQQQTDRYHDDRGK 368 Y + Sbjct: 317 TDDNMASLYTKSADR 331 >UniRef50_C8WA39 Integrase family protein n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WA39_ATOPD Length = 403 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 88/303 (29%), Gaps = 46/303 (15%) Query: 95 QDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQ 153 + + I TY V + G K + + V D+ + +G + Sbjct: 82 FKSLVATQQIERRTYTSYKNNVRYIDLFFGEKRLQEITVTDVELYVSWLYDSGYAANTVK 141 Query: 154 VVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR---------RKITRQRLSLEEWKKIFD 204 + + A Y+P A K P+ + +R++L ++ Sbjct: 142 KAFNSFRACTRHAVA--IRDLQYDPCAAIKAPKGYLAPPNPLNEPSRKKL------QVML 193 Query: 205 IADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW-----------------DDHLHVIQ 247 A M A LA TG R + +++ D+ ++ Sbjct: 194 SALELSP-MVLATYLAYYTGMRREECCGLQWKDVKFKAEDVTAHLCRAISYDGGKTYIKG 252 Query: 248 EKTGSKIAIPLSLRL-NAINWSLRDVVARC--RDYAVSAYLVHFFRSTSQAERGAQVKAN 304 K G +P+ L + + + C A S + G ++ Sbjct: 253 LKNGKDRTVPIPAPLVDILKQWRSKYIEDCMLMGIAFSEEM-----YVLGDFSGEYLRPE 307 Query: 305 TLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ--GLDTQKLLGHKTQQQTDRY 362 T + + + +G FH+ R + Q +LGH T RY Sbjct: 308 RATAWWKSHSEEWGLLGTQGRRPVFHDLRHTYATIAVRTMDIKSAQDILGHSDINMTMRY 367 Query: 363 HDD 365 D Sbjct: 368 ADT 370 >UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales RepID=A8LM37_DINSH Length = 388 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 73/370 (19%), Positives = 129/370 (34%), Gaps = 47/370 (12%) Query: 9 NVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEA-NTRLAEQRTRQ 66 + ++P +K Y +Y++ T G + + I A + R Sbjct: 25 DTALPGFGLRVKSSGSKSYVVQYRNRQT------GRSRRKTIGQHGPLMTLYQAREIARG 78 Query: 67 ILAISDR------IATSKGKAITTSTWLDRYQ---AIQDDRLKSGDIRLNTYKQKAKPVS 117 LA + R A ++ KA + D Y A+ R +S + + Sbjct: 79 YLADALRGGDPVMEAQARRKAKSMRDLADDYMTNHALPKKRPRSAAMDRSLLD------R 132 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 ++ G + + V +DI +L + P A V ++L +F+ A +G G N Sbjct: 133 VVLPAFGRQSVDEVSHKDIQRLHNSL--RDTPYQANRVLALLSKMFELAIRWGLR--GDN 188 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYM-GNAMLLALVTGQRLGDISRMKFS 236 P + + + LS E ++ + DA NA+ L L+TG R G++ ++S Sbjct: 189 PVKGVPRFAEEKRYRWLSDNELDRLREALDAHPNQRAANAIRLQLLTGARTGEVLTSQWS 248 Query: 237 DIW-DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 D D + V + L L+A +L +A R S ++ Sbjct: 249 DFDLDRGVWVKPSHHTKQKRTE-HLPLSAATVALLRSIAHGRTD-DSPFVFP------GR 300 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLG 352 + G +K L ++ A + H+ R G +LLG Sbjct: 301 KPGHPIKD--LKRFWTSVTSTAGLKDYR-----LHDNRHTHASHLVSSGHSLPIVGRLLG 353 Query: 353 HKTQQQTDRY 362 H T RY Sbjct: 354 HTNPMTTQRY 363 >UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1ATP4_PELPD Length = 449 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 71/376 (18%), Positives = 127/376 (33%), Gaps = 40/376 (10%) Query: 23 VNKVYWRYKHPVTGK--FHALGT--NEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 W Y + GK LG+ + A + + + +A ++ A + Sbjct: 44 SGSKTWLYLYAFDGKRRKMNLGSYPDVTLETARGRFEDAKRKVKNNIDPMAEAEEQAEER 103 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 KA T + + Y R K + + + G + + V RDI + Sbjct: 104 RKAPTVADLVHDYIERHAKRFKRSWAKDEQILNRE-----VVPAWGKRKAADVTKRDILR 158 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLE 197 LL+E + P MA ++ +F A + + P K P K++R R LS Sbjct: 159 LLEEIVNRNAPAMANNTFQIIRKMFNWAVEQDILQ--HTPCTGVKLPSPKLSRDRVLSES 216 Query: 198 EWKKIFDIADATHRYM----GNAMLLALVTGQRLGDISRMKFSDIWDDHLHV--IQEKTG 251 E K +++ M A+ L L T QR G+++ + S++ + + K G Sbjct: 217 EIKTLWENLGRPDAGMSDGVRRALRLILTTAQRPGEVTGLHTSELDGCWWTIPAERAKNG 276 Query: 252 SKIAIPLS-LRLNAINWSLRDVVARCRDYA----VSAYLVHFFRSTSQAERGAQVKANTL 306 + LS L L IN ++ + R+ + Y+ + + G A + Sbjct: 277 KTHRVYLSGLALEIINQAIAQA-KKSRETPYDQEYNGYVFPCHHKSKEKPMGDTALAVAV 335 Query: 307 TMN-------------FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KL 350 F+ A A + T H+ R + G + + Sbjct: 336 GRALASPLTDDKGNPLFTAAGKPATENRLGIDHFTPHDLRRTTATFMASMGFMDEVIDAV 395 Query: 351 LGHKTQQQTDRYHDDR 366 L H Q Y+ R Sbjct: 396 LNHAKQGVIKVYNQYR 411 >UniRef50_A4SIA1 Phage integrase family protein n=2 Tax=Gammaproteobacteria RepID=A4SIA1_AERS4 Length = 408 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 72/377 (19%), Positives = 128/377 (33%), Gaps = 45/377 (11%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPVTGKF--HALGT----NEAEAIAIATEANTRLAEQ 62 + + L L + + ++ G+ A+G + A IATE L++ Sbjct: 34 DTQISGLKCLVGKGEGNKKFLMRYLWHGRKRAIAIGRFPDVDLNTAREIATEYKRLLSQG 93 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 + L R + + Y +S ++ L+ Sbjct: 94 IDPKQLKEDKRQELTLYELFQLH-----YLPYAKHHKRSWQNDEQRFRDH------LQPP 142 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 G +L+S +++ L ++ +P + ++L + + G + P + Sbjct: 143 MGSRLLSEINLEQGQALQTSLMSQCKPATNNRITTLLKAILTWSVRMGYLEQH--PLVYL 200 Query: 183 KQPRRKITRQR-LSLEEWKKIFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 K R R L E +++F ADA +RY G + L L+TG R ++ K+ I Sbjct: 201 KTLPENNQRTRFLDKAEIRRLFMAADADENRYAGQYVKLLLLTGLRKDELRLAKWEHIDK 260 Query: 241 DH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 H L + K G R+ +N V+ A +AYL + G Sbjct: 261 VHQTLFIPHTKNGKS-------RILHMNHMAMQVLQDTPVIAGNAYLFP------GQKPG 307 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKT 355 + N +T F++ A+I+ H R L G D Q LGH + Sbjct: 308 QPL--NNVTKPFNRMLKRAQIEGQ----VCIHTCRHSVAALIVSSGGTLYDVQAQLGHSS 361 Query: 356 QQQTDRYHDDRGKGWSK 372 Q + RY Sbjct: 362 SQSSQRYAHLHASRLRH 378 >UniRef50_UPI0000E0E5BD Tyrosine recombinase xerC n=2 Tax=Proteobacteria RepID=UPI0000E0E5BD Length = 383 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 63/365 (17%), Positives = 128/365 (35%), Gaps = 36/365 (9%) Query: 8 NNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQI 67 ++P + + RK +K Y+ K H LG A ++ A + +L T Sbjct: 26 RADNLPKGFRIEIRKTSKGIGTYRFRTKVKDHNLGRTNALSLEQALQQAAQLIPSPTPPH 85 Query: 68 LAISDRIATSKGKA-ITTST-WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGM 125 + +S IA + T + W Y RL++ + ++ + ++ G Sbjct: 86 IPLSPPIAQASPTCTFTLNEFWEQYYWPHIKTRLRTCRNIESMWRIR------IQPTFGH 139 Query: 126 KLISAVDVRDIAQLLDEYIA-AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 + + + V ++ + I +L +F A + + NP + Sbjct: 140 QRLDDIKVLELERFQTSLIEMQLSGSHVTGHIKLLSRMFTLAIQWELITK--NPCDKVEY 197 Query: 185 PRRKITRQRL--SLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 + ++R S E+ + I + + R + M+ LVTG R G +++S Sbjct: 198 MKFDNQKERFLSSDEQTRFISVLMEHPERPVNLLMIFLLVTGVRSGVAKSLRWS-----W 252 Query: 243 LHVIQEKTGSKIAIPLSLRLNAI--NWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 +++ ++ +I + + N I N + D++ R + ++ Q Sbjct: 253 INMEKQIITVPPSIAKNKKQNTIFLNTTAMDILKRLAGINPTYVFIN---------PMTQ 303 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERLYKEQGL--DTQKLLGHKTQQ 357 + N +F A A+I H+ R + L Q+L H Sbjct: 304 LPYNDFKKSFKTALKAAQIS----DSVRIHDLRHTFCSNLVSNNVSLASVQQLANHACYS 359 Query: 358 QTDRY 362 T RY Sbjct: 360 TTLRY 364 >UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVD2_9AQUI Length = 361 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 138/375 (36%), Gaps = 46/375 (12%) Query: 1 MAARPRKNNVSV--PNLYPLYSRKVNKVYWRYKHPVTGKFHA--LGTNEAEAIAIATEAN 56 M +P+K + NLY ++ ++ GK + LG + A Sbjct: 1 MPRKPKKRGKTALGDNLYIIH------GSHWFRFTYRGKTYTKRLGRVNELPLTSAK--- 51 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 +A + QI+ + K + S ++Y + + T ++ + V Sbjct: 52 -HIAGKLRTQII---ENQYLEKKEVPLFSEVAEKYFEWYKT--ERANASRRTIRETERRV 105 Query: 117 SLLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPG 175 L E G K + I + I G +P ++L + ++ + +G + G Sbjct: 106 KKLVEVFGDKTLDYFSEFLIDSYKQDRIKEGVKPSTVNRELNILRAILRKVKEWG-MYSG 164 Query: 176 YNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 P K + R R LS EE K + D + + A +TG R ++ + Sbjct: 165 DLP--RIKTYKVDDERVRYLSPEELKALIDAC---PDWFKPVVKFACLTGLRASELFSLT 219 Query: 235 FS--DIWDDHLHVIQE--KTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFR 290 + ++ + ++ V + KT IPL + + LR+V AR + ++ + + Sbjct: 220 WDMVNLSEGYITVPAKYSKTKETKRIPLHPKALEV---LREVKARQEER----WIDYGYV 272 Query: 291 STSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---T 347 T++ + V+ F A + A I FH+ R G+D Sbjct: 273 FTNRMGKPYSVEGQGYKRVFKTACEKAGIRDFR-----FHDLRHTFASYLVMSGVDFYTV 327 Query: 348 QKLLGHKTQQQTDRY 362 Q+L+ H + + T RY Sbjct: 328 QELMRHSSPRMTKRY 342 >UniRef50_C6BFQ2 Integrase family protein n=4 Tax=Betaproteobacteria RepID=C6BFQ2_RALP1 Length = 412 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 119/336 (35%), Gaps = 39/336 (11%) Query: 47 EAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRL 106 +A A N +A L R +T D+Y + L + Sbjct: 78 KARTQAMALNGEIATGTNPAELKRIRR------AEMTFGDLFDQYYK--NHSLPNKKTSD 129 Query: 107 NTYKQKAKPVSLLRER--AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFK 164 ++ + +S R+ + +SA+ DIAQL + + A V +++ +F Sbjct: 130 EDKQKFDQYLSSNRDGVNLASRQLSAISKADIAQLFGKISMEHKI-TANRVLALVSSIFG 188 Query: 165 EAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATH-RYMGNAMLLALVT 223 +A +G + NP ++ R + L +E K F+ A + + ML++L+T Sbjct: 189 KAIEWG-IWNQMNPCQGIRRNRENSRDRFLHPDELPKFFEHVLAYPNATLRDYMLVSLLT 247 Query: 224 GQRLGDISRMKFSDIWDDHLH--VIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAV 281 G R ++ M++ D+ + + + K G+ ++PL A+ + +++ C D Sbjct: 248 GARRSNVLAMRWEDVNLERAEWRIHETKNGTPQSVPLVPDAVALLRNRQEMPE-CEDSP- 305 Query: 282 SAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYK 341 F + G V+ + A I H+ R Sbjct: 306 -------FVFPGTGKSGHLVEPK---KAWKIVLTQAGIKDLR-----LHDLRRTMGSWQA 350 Query: 342 EQGLDTQ---KLLGHKTQQQTDRYHDDRGKGWSKVA 374 G + + L HK+ T Y + W + Sbjct: 351 GTGANLSVIGRSLNHKSTATTAIY----ARLWMEPV 382 >UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWK7_DESAS Length = 389 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 54/353 (15%), Positives = 104/353 (29%), Gaps = 47/353 (13%) Query: 40 ALGTN-EAEAIAIATEANTRL-AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDD 97 G + + EA + A++ A + +T + ++ Sbjct: 20 GTGPDGKRITHRKVVEATSEREAKKLLDVFSAEVQKGQYIAPSKLTFKEFSQKWLE---- 75 Query: 98 RLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIAQLLDEYIAAG--------- 147 D+ T + + + S + G I + I Q G Sbjct: 76 --SKKDLAPKTLYRYKEILNSRILPAMGHLKIEDIKPFHIMQFYGNLQEPGIREDGKEGT 133 Query: 148 -RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ-RLSLEEWKKIFDI 205 P +L ++F A + + NPAL + P+ K + E+ + Sbjct: 134 LSPATVLYHHRLLTNIFNAAVKWQIILT--NPALRVEAPKAKKHKATSYEEEDTAALLSA 191 Query: 206 ADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQE--------------K 249 + + +AL G R G+I +++ DI L V Q K Sbjct: 192 LEEQPLKFQAIVYIALGCGLRRGEIMGLEWKDIDLTKGTLEVRQSSQYLPGHGTFAKSPK 251 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 S I +++ ++ + V + L G + +++T Sbjct: 252 NESSERI-IAVPTETMSLLKQHRVQQNEQRLQVGGLWQASDRLFTTWDGKPMHPDSITKW 310 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQT 359 FS + P FH R + + G+ + LGH + T Sbjct: 311 FSGFLKNNNLS-----PLPFHGLRHTAASYMIKAGIPLKNIASRLGHSSPNTT 358 >UniRef50_A3WDG1 Site-specific recombinase, phage integrase family protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WDG1_9SPHN Length = 392 Score = 91.4 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 64/349 (18%), Positives = 114/349 (32%), Gaps = 46/349 (13%) Query: 32 HPVTGKFHAL-----GTNEAEAIAIATEANTRLAEQRTR---QILAISDRIATSKGKA-- 81 HP K L G I A R+A+ R + + A K + Sbjct: 41 HPSGKKSFVLQRTMGGKQRLITIGDAAILTERIAKDVARRLILRIELGQNPAEEKQRGKK 100 Query: 82 -ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLL 140 T ++L Y + K + ++ ++ L K I + D + Sbjct: 101 TPTYVSFLRHYWEVAAPTWKPSTLEIHDIYRRTH----LEHAFAGKFIDEIGHADAVRWH 156 Query: 141 DEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWK 200 + P A +L +F +A+ +G +P NP K+ R + + LS E Sbjct: 157 ASLTRSAGPGAANRAMEILKAMFGKAEAWGYLPEHSNPFRGVKRNRGRKIERFLSENEMA 216 Query: 201 KIFDIAD---ATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIP 257 ++ A + L +TG R G+I + + ++ L + KTG ++ Sbjct: 217 RLGYALARHRAAKPNEVAVISLLALTGCRRGEILNLTWGEVQGRKLKLTDSKTGPRVV-- 274 Query: 258 LSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLA 317 + R V+ R + F + + + + R A Sbjct: 275 ------WLGKEARAVIDRLPRKRPHECVFQF----------DVLPVSAIEWFWRMLRVEA 318 Query: 318 RIDWGEGSPATFHEQR----SLSERLYKEQGLDTQKLLGHKTQQQTDRY 362 I+ H+ R SL+ R + + +LLGH T RY Sbjct: 319 GIEDVR-----LHDLRHNFASLAARSSETLPMIG-RLLGHNNSSTTARY 361 >UniRef50_A7XXG4 Phage XerD-like integrase n=2 Tax=unclassified Siphoviridae RepID=A7XXG4_9CAUD Length = 327 Score = 91.4 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 117/292 (40%), Gaps = 34/292 (11%) Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 G+A+T L + + RL+ R T + V L + K + A+ + + Sbjct: 38 GEAMTIEQALKEFLK--EKRLEGK--REKTLRWYESTVRYLLKEHLHKPLDALTRNLVVE 93 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRK-ITRQRLSLE 197 +LD+ +A +A R+ L G +NP K+P+ + + L+L+ Sbjct: 94 VLDKPVA--PATLANYDRA-LRGFVNWLI--GVEYLEHNPFKGRKRPKEEFYLKDVLTLD 148 Query: 198 EWKKIFDIADATHRYM---GNAMLLALVTGQRLGDISRMKFSDI-WDDHLHVIQEKTGSK 253 E K +F A RY + + LAL +G R +I R++ +DI WD+ + KTG Sbjct: 149 EIKALFKAAMRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGHG 208 Query: 254 IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKA 313 + +P++ LR + R R VH R + + L+ + Sbjct: 209 V-VPVT---RETLRYLRLYLDRERKATSPYLFVHRNR---------PLTSEVLSHWIKRQ 255 Query: 314 RDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGHKTQQQTDRY 362 +A I+ G H R Y + G D Q++L HK+ T RY Sbjct: 256 AKVAGINKKVGM----HLLRHTFATNYLKSGGDPFTLQRILRHKSPAMTSRY 303 >UniRef50_UPI000169495E prophage LambdaBa04, site-specific recombinase, phage integrase family protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169495E Length = 379 Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 66/386 (17%), Positives = 127/386 (32%), Gaps = 54/386 (13%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYK----HPVTGK----FHALGTNEAEAIAIA 52 MA RK N P P R W Y+ P TGK + EA A Sbjct: 1 MAGTFRKRNCKCP---PERRRCTCGAKWYYRYDITDPKTGKRKQKEVGGFRTKEEAQEAA 57 Query: 53 TEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQK 112 + L + + T +L + ++ NTY+Q+ Sbjct: 58 VRIQSELLNGTYVEPTKL------------TVGEFLLDFVENTLKY----EVAPNTYEQR 101 Query: 113 AKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGE 171 V ++ G ++ + + + + Q + ++L F +A + Sbjct: 102 MTFVKNHIQPNIGSLRLTDLTPNHVQKFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNM 161 Query: 172 VPPGYNPALATKQPRRKITRQRL---SLEEWKKIFDIADATHRYMGNAMLLALVTGQRLG 228 + NP K+P ++ ++E+ +K D A + LLAL +G R G Sbjct: 162 I--SRNPIPLVKKPSLSRKNTKMKTWTVEDQRKFLDYAKDGPKLYYVIFLLALTSGMRKG 219 Query: 229 DISRMKFSDIWDDHLHVIQEKT----GSKIAIPLSLRLNAINWSLR------DVVARCRD 278 ++ + + D+ V ++T K+ + + + +++ V+ + + Sbjct: 220 ELLGLIWDDVDTKKGIVSIKRTIVYAQRKLYLKDMPKTESAIRTIQLPEPTIKVMKQWKL 279 Query: 279 YAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSER 338 + L F S + N+L +K A + T H R Sbjct: 280 ECPANELNLLFPSPKTK---GILYPNSLDKQLAKTIKGAGV-----PEITMHGLRHTFAT 331 Query: 339 LYKEQGLDT---QKLLGHKTQQQTDR 361 ++ Q++LGH T + T Sbjct: 332 TLLGSNVNPKIVQEMLGHATIKTTMD 357 >UniRef50_B9MQ70 Integrase family protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MQ70_ANATD Length = 325 Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 108/310 (34%), Gaps = 43/310 (13%) Query: 81 AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQL 139 +T S WLD + +R TY + ++ ++ + G + + I + Sbjct: 10 GLTFSQWLDIWMNQFMKI----KLRPTTYSSYIQLINKHIKPKLGHIQLQNLSPLAIQEC 65 Query: 140 LDEYI-AAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEE 198 + + P+ + + ++ K+A G + + A+A + R + LS E+ Sbjct: 66 YNSLLLENLSPKTVKNIHVIIHSALKQAIKCGYINQNVSEAVALPKVERPEIKT-LSSEQ 124 Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD--HLHVIQE-------- 248 A Y A LL L TG R G++ +K+ DI D +HV + Sbjct: 125 VTTFLQAAQTDSLY--PAFLLELYTGLRRGELLGLKWDDIDFDNCTIHVKRSLVRVYDHN 182 Query: 249 -----------KTGSKIA-IPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 KT + IP+ + + L+++ + +S + Sbjct: 183 LKKTTLLLQPPKTKAGYRVIPIP---DFVVAELKELYEEHQRIKLSQPNFNSLNLMFVTT 239 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGH 353 +G + F + A + H+ R L +Q + Q++LGH Sbjct: 240 QGTPIDPRNFERKFKQLLKKANLPNIR-----LHDLRHTVATLLLQQNVHPKIVQEILGH 294 Query: 354 KTQQQT-DRY 362 + T D Y Sbjct: 295 RDISTTLDIY 304 >UniRef50_C4XJH7 Putative site-specific recombinase n=3 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJH7_DESMR Length = 374 Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 76/367 (20%), Positives = 134/367 (36%), Gaps = 69/367 (18%) Query: 32 HPVTGK--FHALGTNEAEAIAIATEANTRLAEQR---TRQILAISDRIATS--------- 77 H TGK + G E EA A A N +++ + T L +D I++ Sbjct: 15 HDETGKRRDKSFGRGE-EAYAQAEAFNKAVSDAKKLCTALPLPPTDLISSPAPAPVKMIE 73 Query: 78 ----------KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKL 127 G+ +T +Y A SG NT K + G ++ Sbjct: 74 EITLPEKTIQSGQGMTFRELAGKYLAHLKV---SGRTENNTKKLAKMIDNQFNPIIGDRV 130 Query: 128 ISAVD-VRDIAQLLDEYIA----AGRPR---MAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 ++++ + D+ + + RPR + +F G NP Sbjct: 131 VNSMTYIDDMVPFIQFFQETNGKQNRPRSQPTVNRYGDYVNAIFNFGVTTGL--TTVNPM 188 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLG--DISRMKFSD 237 K+ R K +L++++ K+I D A+ R+ AM + G R G ++ +K+ Sbjct: 189 KGRKKSREKPRDVQLTVDDVKRIMDHAEPHVRW---AMEVCFSLGTRPGESELLALKWDH 245 Query: 238 I-WDDHLHVI-QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 I +D + I KT + +P+S L +++V + + S Y++ Sbjct: 246 IDFDKGIAKIYASKTRTYRVVPISPTLLG---KMKEV----KTESQSGYVI--------E 290 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLG 352 RG + + F +A + A I + P ++ R L +G D KLLG Sbjct: 291 WRGQPI--GMIRKGFRRACERAGITY----PVRMYDLRHLFATTMLSKGADLAAVSKLLG 344 Query: 353 HKTQQQT 359 H T Sbjct: 345 HSMISTT 351 >UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepID=Q1NPW4_9DELT Length = 465 Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 119/371 (32%), Gaps = 51/371 (13%) Query: 8 NNVSVPNLYPLYSRKVNKVYW-RYKHPVTGKF--HALGTNEAEAIAIATEANTRLAEQRT 64 + ++ K Y RY+ GK H +G + + A A TRL + Sbjct: 112 YDEALTGFILEVRSTGGKTYHLRYRDG-HGKLRQHKIGGADDISFDKAQAAATRLRSRVV 170 Query: 65 RQILAISDRIATSKGKAITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER- 122 +++R +K + T + ++Y + L+ Sbjct: 171 LGEDPLAER--QTKKQVPTLEEFAAEKYMPYVKGY----------KRSWKSDFGYLKNHL 218 Query: 123 ---AGMKLISAVDVRDIAQLLDEYIAAGRP-RMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 G + + + ++ +L A G +L +F A+ + NP Sbjct: 219 LPLFGNQHLDQIKQAEVIELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNP 278 Query: 179 ALATKQPRRKITRQR-LSLEEWKKIFDIADATHRY-MGNAMLLALVTGQRLGDISRMKFS 236 R+R L+ +E ++ +++ + + L L+ G R ++ ++ Sbjct: 279 TTGVALFEANNGRERYLTEDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWE 338 Query: 237 DIWDDHL--HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 D + K+G +PLS + S+ +S Y+V ++ Sbjct: 339 DFDLARRSWRIPLSKSGKARYVPLSTAALEVLASIPR---------LSPYVVPNPKTLQP 389 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLL 351 ++ ++ AR A + H+ R G + +LL Sbjct: 390 FV--------SVFRSWDTARKKAGLPDVR-----MHDLRHSFASFLVNSGRSIYEVSQLL 436 Query: 352 GHKTQQQTDRY 362 GH + T RY Sbjct: 437 GHSQLKTTQRY 447 >UniRef50_A7IMK8 Integrase family protein n=39 Tax=Bacteria RepID=A7IMK8_XANP2 Length = 467 Score = 91.0 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 62/369 (16%), Positives = 117/369 (31%), Gaps = 40/369 (10%) Query: 8 NNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIATEANTRLAEQRTR 65 + ++P + K + G+ A+G + A + R Sbjct: 24 RDTTIPGFLVKITPTGRKTFMIAYVANNGQRRKPAIGRYGEITVEQARRIAQDWLAEVRR 83 Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAG 124 ++R A+ + A T DR+ + + +T K + G Sbjct: 84 GADPSAERTASRQ--APTVKELFDRFITDYSES----RNKPSTVKSNRGFGKRHILPALG 137 Query: 125 MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 + V DIA L+ + P A V S + +F A+ +G P G NP + Sbjct: 138 HMKVPDVTRSDIANLMKKMSK--SPVNANRVLSAVRKMFNMAEVWGMRPDGTNPCRHIPK 195 Query: 185 PRRKITRQRLSLEEWKKIFDIADAT------HRYMGNAMLLALVTGQRLGDISRMKFSDI 238 + + ++ E +K+F+ D H ++ A+ L R+ +I +++S + Sbjct: 196 FPERGKTRLITDAEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEFAARMSEIIELEWSWV 255 Query: 239 WDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 D+ V+ KTG +N + S ++ S + Sbjct: 256 DFDNRRVVWPDSKTGGM--------SKPMNAEALRLFETAPLLEDSPFV-----CPSVFD 302 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGH 353 + T + + A + H R S G+ + L H Sbjct: 303 PKKAMSPYTYYQGWKRILKRAGLPH-----VGTHGIRHRSATDIANSGVPVKVGMALTAH 357 Query: 354 KTQQQTDRY 362 KT RY Sbjct: 358 KTVTMFMRY 366 >UniRef50_A5L0D6 Site-specific recombinase, phage integrase family protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L0D6_9GAMM Length = 434 Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 101/286 (35%), Gaps = 30/286 (10%) Query: 90 RYQAIQDDRLKSG---DIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQLLDEYIA 145 R+ A+ + +L+T + + L G +S +D + + DE + Sbjct: 88 RFDALVKEEWADKVCKGWKLSTQGTASSALKKNLLPEFGRFPVSCIDSCHVHRWFDEL-S 146 Query: 146 AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI 205 A VL +FK A G NP KQ R++ + LSL+E ++ Sbjct: 147 QSYAGTANRNLDVLRSIFKYAVKQGYCID--NPCDGLKQNRKRKLNRFLSLDELARLHKA 204 Query: 206 ADATHRYMGN------AMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLS 259 + + L L+TG R+ +++ +++S + H+ KTG+K+ + Sbjct: 205 LTVVSQQGELEACCCQVLELVLLTGCRISEVTGLQWSFVKGREWHLPDSKTGAKVVY-VG 263 Query: 260 LRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARI 319 + + V R + R S++ + + V R LA I Sbjct: 264 KEAQQLLSDIPQQVGAHRSESHDDVFTPLRRFVSRSTKVSMVWQQ--------VRALAHI 315 Query: 320 DWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRY 362 + H+ R +G KLLGH T RY Sbjct: 316 EDVR-----IHDLRHTFASYAVLEGYPIPMVSKLLGHTRISSTLRY 356 >UniRef50_Q72B79 Site-specific recombinase, phage integrase family n=2 Tax=Desulfovibrio vulgaris RepID=Q72B79_DESVH Length = 373 Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 57/343 (16%), Positives = 117/343 (34%), Gaps = 40/343 (11%) Query: 30 YKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLD 89 Y+H + +G ++E + A A R + + R + L+ Sbjct: 34 YRHGGKKVWETIGR-KSEGVNAAYAARVRAERVKEVEAGRFIAR-----DEMPVFRDALE 87 Query: 90 RYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGR- 148 RY + S ++ P+ G + + I +L GR Sbjct: 88 RYLTVHAKGKSSESHMRGYFEHHIAPL------FGDAKMDRIKPIHIEELKRSMAEKGRS 141 Query: 149 PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIAD 207 P+ + +++ V+++ +G + G +P + P+ R R L+ E + Sbjct: 142 PQTIRHAIALVRQVYRKCVAWG-IYTGTSPTDGVEMPKVDAARLRFLTEAEAASLLHALH 200 Query: 208 ATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHVIQEKTGSKIAIPLSLRLNAI 265 R + L+L TG RLG++ ++ + D + V+ K G++ A + Sbjct: 201 RRSRQWHDIAYLSLYTGMRLGEVLGLQVGHVNVADGVIDVMDAKAGTRAAY--------M 252 Query: 266 NWSLRDVV-ARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDL--ARIDWG 322 +++++ ARC ++ ++ FS+ D Sbjct: 253 TAGVKEILAARCAGRDAKEFVFVQRGGGR---------VRYISSVFSRVADELFNDGVTD 303 Query: 323 EGSPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQTDRY 362 FH R ++G+ L+GH + + T RY Sbjct: 304 ARHKVVFHTLRHTFGSWLAQRGVPLYTIAVLMGHSSLEMTKRY 346 >UniRef50_A6QD27 Site-specific recombinase, phage integrase family n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QD27_SULNB Length = 366 Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 133/380 (35%), Gaps = 52/380 (13%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYW-RYKHPVTGK-------FHALGTNEAEAIAIA 52 MA R + +V L + K +KVY+ RY+ GK ++ G E Sbjct: 1 MAKRFKTRYKNVIYLETTTNNKPDKVYYIRYR--ENGKLREIKVGKYSEGIRENYCNQKL 58 Query: 53 TEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQK 112 E T A + Q I+ AT K K +T + +Y ++ K+ + N YK Sbjct: 59 LE--TVNAIRLGEQPPIIN---ATHKRKIVTFDEIVTKYFKSKELHNKTNEQTKNRYKS- 112 Query: 113 AKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEV 172 L+E G K I ++ DI + + + P+ + V+ A Sbjct: 113 -----QLKEYIGSKDIYSITKNDILAIQTDMAQSRAPKTVNQYIQFIKAVYNYAIAEDLF 167 Query: 173 PPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDIS 231 G NP K+ + R+R LS++E K + + + LL+L TG RLG I Sbjct: 168 -SGVNPVKGIKEQKIDNKRERFLSIDEIKALIEEVKENED-LYLFTLLSLSTGGRLGTIM 225 Query: 232 RMKFSDI--WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 + D+ ++ + + K D D + L+ Sbjct: 226 AIAKKDLDFNNNMITLNDIKN-------------------EDTYGGFFDNTLKEILIKRT 266 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDL---ARIDW-GEGSPATFHEQRSLSERLYKEQGL 345 + ++ + TL SK ID + H R +G Sbjct: 267 ANLKPNDKLIVMNERTLRRQLSKVLTKLFNVGIDADDRKNRVVIHTLRHTFASQLAIKGT 326 Query: 346 ---DTQKLLGHKTQQQTDRY 362 QKLL HK +QT RY Sbjct: 327 PIFTIQKLLNHKDIKQTLRY 346 >UniRef50_UPI00016AD797 phage integrase family protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AD797 Length = 339 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 129/347 (37%), Gaps = 47/347 (13%) Query: 46 AEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIR 105 +A A A ++ + I+ I + + + S L + D L+ Sbjct: 17 RKAGYPAQSATFPTRKEAEKWIIDTEAAINAGRFQNLDGSALLRD---VIDRYLRDVTPS 73 Query: 106 LNTYKQKAKPVSLL-RERAGMKLISAVDVRDIAQLLDEYIA--AGRP---RMAQVVRSVL 159 + + + R+ G + + +A D +A GRP ++L Sbjct: 74 KKGESSETWRLKAIQRDEIGSYSVGKLTPAVVANWRDRRLAGTDGRPVSGSTVNREMNLL 133 Query: 160 IDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHR------Y 212 V + A+ + NP ++P+ R +RL+ +E + TH Y Sbjct: 134 HHVLETARKEWGLGAPVNPVSEVRRPKNSPARERRLTSDEKVALLAACRQTHSRSGRQSY 193 Query: 213 MGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV----IQEKTGSKIAIPLSLRLNAINWS 268 + + + LAL TG R G+I +++ + D V KT +PLS R I Sbjct: 194 LADVVELALETGMRQGEIIKLEIEQVRLDDRFVGLRAGGTKTEEARTVPLSTRAAEI--- 250 Query: 269 LRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPAT 328 L+ V+ R+T + G + ++ + F +ARD A I T Sbjct: 251 LKSVIGD--------------RTTGRVWVG--LTSDAVKRAFIRARDRAGIK-----DLT 289 Query: 329 FHEQRSLSERLYKEQGL---DTQKLLGHKTQQQTDRYHDDRGKGWSK 372 FH+ R + + E GL + + GHKTQ +Y R K +K Sbjct: 290 FHDSRHDATTRFVELGLTDTEVMSITGHKTQSMMRKYTHLRAKDLAK 336 >UniRef50_C4V5B3 Prophage LambdaCh01, site-specific recombinase phage integrase family protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5B3_9FIRM Length = 377 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 69/376 (18%), Positives = 126/376 (33%), Gaps = 66/376 (17%) Query: 25 KVY---WRYKHPVTG-----KFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 KVY + Y+ P TG K A E ++ + + + +++ Sbjct: 2 KVYDVRYNYRDPATGQIVRKKKRGF-----LRRIDAEEFLLQINKAQQEGVFLTPEKLTL 56 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRD 135 S +TWL Y + +++ +TY Q V L AG I A+ Sbjct: 57 S----TYLNTWLSSYAKV--------NVKASTYAQYEAIVKKRLIPWAGGCDIKAITPMQ 104 Query: 136 IAQLLDEYIAAGRP--------RMAQVVRSVLIDVFKEAQHYGEVPPGYNP---ALATKQ 184 I + + GR + + VL + A G + NP + Sbjct: 105 IDEFYATLLQQGRADGKGGLSAKSVLYIHRVLNEALGHAVQKGLLVK--NPLLSVTNIPK 162 Query: 185 PRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD--- 241 ++ S EE + + + A A + + A+ LA + G R G+ +K+S I D Sbjct: 163 AKKFKASAY-SAEEIRSLLEAAAAENSFWQAAIALAAICGLRRGECLGLKWSKIDFDSQS 221 Query: 242 ------------HLHVIQEKTGSKIA-IPLSLRLNAINWSLRDVVARCRDYAVSAYLVHF 288 +H K+ I I + AI ++ + + +++ +AY H Sbjct: 222 ITIDEQVIEIHHKIHFSTPKSTESIRTIHAPAEVFAILKRRKEELDQHKEWLGNAYDEHD 281 Query: 289 FRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL--- 345 G+ ++ T F + FH+ R L + G+ Sbjct: 282 LVLCRG--NGSPIRPGNFTKAFKDF-----LARHNMRTIRFHDLRHSCASLMLQSGVAMK 334 Query: 346 DTQKLLGHKTQQQTDR 361 ++LGH + T Sbjct: 335 TASEILGHSSIAITAD 350 >UniRef50_UPI00016AB8CE Phage integrase family protein n=1 Tax=Burkholderia pseudomallei DM98 RepID=UPI00016AB8CE Length = 246 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 80/241 (33%), Gaps = 35/241 (14%) Query: 151 MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATH 210 M +V+R+ L F+ G NP K + K + ++ + I + T Sbjct: 1 MQRVMRAFLSGFFQWCVDKG--KRDTNPCREVKLKKPKPRQTYITDAHFSAIRNAMLETT 58 Query: 211 --------------------RYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQE 248 M + L +T QR +I +K+SD+ +H + Sbjct: 59 YKLNSGTDSEKEVVADVPTGPMMQCIIDLCYLTAQRSTEIRTLKWSDVDREAGVIHFVPS 118 Query: 249 KTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTM 308 KT + + + I + +V+ R + + +G ANT+ Sbjct: 119 KTADSSGVRVDFK---ITPEINEVLLRIQQIDGRPTI--SDMPVVHTRKGKMYAANTILK 173 Query: 309 NFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL---LGHKTQQQTDRYHDD 365 + A A + T + R+ + + G D + L H ++ T+ Y Sbjct: 174 AWKTAAKRANLS---HFGYTVKDIRAKALTDGERAGYDVKALQIAAAHTDEKMTETYIKK 230 Query: 366 R 366 R Sbjct: 231 R 231 >UniRef50_D2BJR0 Site-specific recombinase, phage integrase family n=2 Tax=Dehalococcoides RepID=D2BJR0_DEHSV Length = 385 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 70/371 (18%), Positives = 135/371 (36%), Gaps = 67/371 (18%) Query: 28 WRYKHPVTGKF-HALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTST 86 + + P TGK + T + E + + + K T T Sbjct: 18 YMGRDPKTGKKIYQWQTVKGTKSHAEKELAALINRKNNGSFV---------KPTKTTVGT 68 Query: 87 WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQLLDEYIA 145 +L+ + + S + T+++ ++ V L L G ++ + I + ++ Sbjct: 69 FLESWL----ETYASCNTAPRTFERYSQIVRLHLTPNLGRIELTQLRPEHIQAYYSKALS 124 Query: 146 AGRPR----MAQVVR---SVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL-- 196 GR AQ V+ VL + A +G + N A+A PR + R+ ++ Sbjct: 125 GGRVSGGGLSAQTVKHHHRVLSEALNHAVKWGLL--ARNVAMAVDPPRPE-KREMHTIAP 181 Query: 197 EEWKKIFDIADATHRYMGNAMLL----ALVTGQRLGDISRMKFSDI-------------- 238 E+ +F+ A + G L AL TG R G+I +++SDI Sbjct: 182 EDMSVLFEEAAKMEKNSGLPYELIFMTALHTGMRRGEILALRWSDIDLAKSKIYVRCSLQ 241 Query: 239 --WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 + + + + KT P S RL ++ SL + + ++ + + ++ + Sbjct: 242 CLKNGEIIIREPKT------PGSRRLVSMTPSLLEKLIIHKESSSANMILQGKTLQGDSL 295 Query: 297 -----RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ--- 348 G + NT++ F+K A ++ H+ R L G+ + Sbjct: 296 VFAHFDGTPINPNTVSPAFAKIAKRAGLNLR------LHDLRHSHATLMLTAGVHPKIVS 349 Query: 349 KLLGHKTQQQT 359 + LGH T T Sbjct: 350 ERLGHSTVAFT 360 >UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M18 RepID=C6MS46_9DELT Length = 356 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 118/328 (35%), Gaps = 41/328 (12%) Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 Q+T + T + K T + +D+Y + + + + ++ Sbjct: 43 QQTEAAIREGRHFKTREAKKHTVAEMVDKYVKTVLP------TKPKSKDTQEGQLLWWKD 96 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAA-------GRPRMAQVVRSVLIDVFKEAQ-HYGEVP 173 G+ ++ V I + D+ +A P + L F A +G V Sbjct: 97 EIGLYTLADVTPAMIGECRDKLLAGKTKGGGLRSPATTVRYMAALSHAFSVAVNEWGWVE 156 Query: 174 PGYNPALATKQPRRKITRQR-LSLEEWKKIFDIAD-ATHRYMGNAMLLALVTGQRLGDIS 231 +P K+P+ R R L+ +E ++ + A + + + +LLAL TG R +I Sbjct: 157 D--SPMRKVKKPKEPRGRVRFLTDDERNRLLEAAKRSCNNCLYPVVLLALSTGMRFSEIM 214 Query: 232 RMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 +K+ DI L + K G + +P+ +N + + R + + LV Sbjct: 215 NLKWKDIDLKRKCLILHDTKNGERRNVPV------VNLAHSVLTERSKVRRLGTELVF-- 266 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LD 346 + L +++ A A ++ FH+ R + G + Sbjct: 267 -----PSISDPTMPSNLRKSWAAAVRDANLEDFR-----FHDLRHSAASYLAMNGATLAE 316 Query: 347 TQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 ++LGHKT RY + S+V Sbjct: 317 IAEVLGHKTLAMVKRYAHLSEQHTSRVV 344 >UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP99_HAHCH Length = 416 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 47/383 (12%) Query: 15 LYPLYSRKVNKVYWRYKHPVTGK--FHALG----TNEAEAIAIATEANTRLAEQRTRQIL 68 +YP + +RY+ P T K +LG + A A +L E Q + Sbjct: 30 IYPKRGKIARTWVFRYRRPATKKPAKLSLGDYPVISLRAARQQAEIMRQQLFEGLDPQYV 89 Query: 69 AISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKL 127 R AITT + + +Q + ++ T + L + G L Sbjct: 90 QKEQR--AENANAITTQQLFESWLTLQK---SAKEVTDRTLADHEARWRVHLEKSLGPLL 144 Query: 128 ISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR 187 V R IA +LD +A G + +L +F+ A+ + NP Sbjct: 145 AKHVIRRQIAAVLDSMVAKGIKEETRKCLCLLKMLFRFAEERHLIKE--NPIEGLSAKSF 202 Query: 188 KIT----RQR-LSLEEWKKIFDIADATH--RYMGNAMLLALVTGQRLGDISRMKFS--DI 238 KIT R R L L E + + + D+ NA L ++TG R G+++ M++S D+ Sbjct: 203 KITAGAPRDRALPLSELRSFWRLLDSASITPATANAFKLLILTGARRGEVTMMRWSELDL 262 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ--AE 296 + E+T ++ A +L L + L + R + V + + Sbjct: 263 TQGMWVLPPERTKNRKA--HTLYLPNLAMRL---IESMRPISGHGEYVLSLGNGITPLST 317 Query: 297 RGAQVKANTLTMN--------FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ 348 G V L+ R A WGE + H + +++ + T Sbjct: 318 EGLTVTLRRLSTRLESVPHFTVHDLRRSAATAWGEHLKTSPHVIEKMLNHQPRDRLVATY 377 Query: 349 KLLGHKTQQQTDRYHDDRGKGWS 371 + Y D++ W Sbjct: 378 QRAA---------YIDEQKMAWK 391 >UniRef50_A8V435 Phage integrase family protein n=2 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V435_9AQUI Length = 324 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 72/352 (20%), Positives = 131/352 (37%), Gaps = 53/352 (15%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 ++ N +Y+ GK +L + +A+A RL Q R+ L I S Sbjct: 2 RLFKRENGIYYVEF--ERGKKRSL-KTKDKALAQ------RLFNQLKREYLKG-KIILLS 51 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIA 137 +GK I S +++ Y + T+K+ + L++ G I A+ + + Sbjct: 52 EGKKIKLSEFIEEYLEWCRENRSDE-----TFKKARYVLQKLKDHTGDIYIKALTKKHLD 106 Query: 138 QLLDEYIAAGRPRMA-QVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL 196 + + +A G R + + +A + V P KQ + T R L Sbjct: 107 EYVSTLLAQGISRTTINIHIRTIKSALTKAVEWEYVQNH--PLEGYKQLKVHQTPPRFLL 164 Query: 197 -EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQEKTGSK 253 E+ K+ + D ++ L + TG RLG+I ++++ I + + V + KT Sbjct: 165 PEDIAKVEKVIDDEF-WL-FVFRLFVYTGMRLGEIHKLRWKHIDLNRNVIKVEKTKTFQS 222 Query: 254 IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKA 313 IP+ +L A + R A+ + + + + KA F Sbjct: 223 RVIPIHPKLRAELEA--------RTPAMGKVVPYAKPTIEHKLKNCFKKAG-----FKDL 269 Query: 314 RDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRY 362 R H+ R L G+D Q+LLGH++ + T+ Y Sbjct: 270 R--------------IHDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIY 307 >UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J3W5_DESDA Length = 337 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 116/300 (38%), Gaps = 43/300 (14%) Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVR 134 + ++ + T + L+R+ A R + +L T K +A + + ++A+ + Sbjct: 52 SRTEAENTTLNEALERFIAEYVPRYNN--PKLETIKARALQRRKIATKF----MAAIRSK 105 Query: 135 DIAQLLDEYIAAGRP-RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-Q 192 DIA + E A G ++ +++ VF A + NP +P+ R + Sbjct: 106 DIADFMQERAAEGVAGNTIRLDLALISRVFNVAISSWGMESLRNPVSRIPKPKVSSGRTR 165 Query: 193 RLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQEKT 250 RL +E +++ + + + A+ T R G+++ + + D+ ++ + K Sbjct: 166 RLEGDEEERLLAACSDS---LRPIVRFAIETAMRRGEMASLTWQNIDLEKSTAYLPKTKN 222 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 + +PLS I +L ++ R Q+ ++T F Sbjct: 223 NEERTVPLSPAAVQILKNLE---------------------KGESARVFQLSDVSITQAF 261 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSE-RLYKEQGLD---TQKLLGHKTQQQTDRYHDDR 366 K I TFH+ R + RL++ LD + + GHKT Q RY R Sbjct: 262 IKTCQKVGI-----EGLTFHDLRHEATSRLFERTDLDIMEIKSITGHKTLQMLARYSHLR 316 >UniRef50_Q7MPT5 Site-specific recombinase, phage integrase family n=14 Tax=Gammaproteobacteria RepID=Q7MPT5_VIBVY Length = 434 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 82/377 (21%), Positives = 137/377 (36%), Gaps = 43/377 (11%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTG--KFHALGTNEAEAIAIATEANTRL 59 A P+K + LY RK YW ++ + LG ++A A A Sbjct: 32 KADPKKYSDG-EGLYFCV-RKQGSPYWMIRYTTAKGRREATLGQFPLMSLADARIAAAYF 89 Query: 60 AEQRTRQILAISDRIATSKGKAITTST-WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 ++ I + ++ T + D Y+ RLK I Y+ K +S Sbjct: 90 RKEVRDGIDPLLEKQKIELPDIETVDQLFHDWYRTDLSRRLKHPKIP---YRVYTKDISP 146 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + G+K I+ V RD+ ++L+ + RP +A + +F+ A NP Sbjct: 147 V---IGIKCIAEVTARDVREVLERIRESNRPTIANDTLMYMKQLFRHAIKLDL--TLNNP 201 Query: 179 ALATKQP----RRKITRQRLSLEE----WKKIFDIADATHRYMGNAMLLALVTGQRLGDI 230 A A + LS EE + ++ R A L LV G R ++ Sbjct: 202 AAAFTVDDAGGVESSKDRMLSKEEIHYAFSVFHTHINSFGRDNYLACCLFLVLGVRKSEL 261 Query: 231 SRMKFSD------IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAY 284 + + +WD L + KTG I+IPL + A L+ + C S Y Sbjct: 262 CEAMWREMDLTTGVWD--LPKERSKTGVPISIPLPRQAIAWFNELQ--IRAC----GSPY 313 Query: 285 LVHFFRSTSQAERGAQVKANTLTMNFSK--ARDLARID-WGEGSPATFHEQ----RSLSE 337 + R++ + G ++ F + R + G+ T H+ RSL+ Sbjct: 314 VFPARRASHRPHMGPDTLNRAISKLFGREPGRKKQPPNKMGKLEHFTVHDLRRTFRSLAA 373 Query: 338 RLYKEQGLDTQKLLGHK 354 L G ++ L HK Sbjct: 374 SL-GIAGNVAERCLNHK 389 >UniRef50_B5S2W8 Integrase/recombinase protein n=1 Tax=Ralstonia solanacearum MolK2 RepID=B5S2W8_RALSO Length = 310 Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 102/319 (31%), Gaps = 40/319 (12%) Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGM 125 + LA R T S + Y A + D + + + +R Sbjct: 3 ERLAEEKRKIEVDATERTMSRLVAIYMAK-----HAKDYAESYRDEWKRRGETIRTAFRN 57 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 I VD L E +P + +++ L F A + NP K Sbjct: 58 FEIEQVDAAACEDFLTE-NWHDKPTTQKAMKAWLSGFFSWAVRRKHLQ--VNPVREVKIK 114 Query: 186 RRKITRQRLSLEEWKKIFDIAD--------ATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 + ++ + I D T M + L +T QR +I ++++D Sbjct: 115 KPPRRTVYITSAHFVAIRDALAMAADGKKTPTGPMMQVFVDLCYLTCQRSTEIRNLRWAD 174 Query: 238 I-WDDHL-----HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 I W L ++ +G + P++ + A+ A+ + Y+V Sbjct: 175 IDWSARLIRFVPTKTEDSSGEAVDWPITPEIEAVLHR-----AKKLEPIGGDYVV----- 224 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL- 350 + + G ++ A+ A + + T + R+ + K+ G D + L Sbjct: 225 --RDKHGKPKTTAACRDAWNDAKMRAGL---RDTKYTVKDIRAQALTDAKKAGYDIEALQ 279 Query: 351 --LGHKTQQQTDRYHDDRG 367 H + T+ Y R Sbjct: 280 VAGAHSDRATTEGYIKQRE 298 >UniRef50_A9IT43 Phage-related integrase/recombinase n=5 Tax=Bartonella RepID=A9IT43_BART1 Length = 345 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 62/376 (16%), Positives = 119/376 (31%), Gaps = 56/376 (14%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ 62 +PR P L + NK+ W + +G + I T+ Sbjct: 2 PKPR-----PPYL-LKEVTRHNKIIWYVR---------IGHGKRIRIRG--TYGTQEFVD 44 Query: 63 RTRQILAISDRIATSKGKAITTST----WL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 + LA I K K WL +Y D + T +QK + Sbjct: 45 NYKSALAELQGIIPPKPKTGKLIEGSFAWLLKQYFNSSDWYC----LAKATKRQKELILM 100 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + + G A++ + I ++ P MA+ L +F A G + N Sbjct: 101 KVCDSIGNIPYQAIEKKHIVAGVER--RKETPAMARNFLKALNGLFNWAIDQGLLES--N 156 Query: 178 PALATKQPRRKITR--QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 P + K+P + ++ +K + + + + L TG R GD R+ + Sbjct: 157 PTVGVKRPALNNKDGFAVWTEDDVEKYYQRWSHGT-HERVWIDVLLYTGLRRGDAVRIGW 215 Query: 236 SDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 ++ D+ +H+ EK+ + + L + L + +L+ + + + Sbjct: 216 KNVKDNIIHLKTEKSKYQTDVFLPI-LPELAETLK------IGPIGNETFICSKTNQKFI 268 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLG 352 + + F A + A I + H R L+ G + + G Sbjct: 269 K-------ESFGNAFRDACNAAGI------KKSAHGLRKLAATRAANSGATVSQLKAIFG 315 Query: 353 HKTQQQTDRYHDDRGK 368 Q Y + Sbjct: 316 WTEDQMASLYTKSADR 331 >UniRef50_Q2STX2 Site-specific recombinase, phage integrase family n=1 Tax=Burkholderia thailandensis E264 RepID=Q2STX2_BURTA Length = 222 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 76/235 (32%), Gaps = 33/235 (14%) Query: 135 DIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR- 193 +A D + A +L VF A NP ++PR R R Sbjct: 1 MVAAWRDARLGEVSSGTALRELQLLGHVFSVAIREWGAQLPSNPVSLIRKPRSGKARDRV 60 Query: 194 LSLEEWKKIFDIADATH-RYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQE--KT 250 L+ E + H ++ ++ AL T R G+I + + D+ + K Sbjct: 61 LTTSERTALISACSQCHNPWIKPVVIFALETAARRGEILALTWQDVDLARRTATLQITKA 120 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 G IPLS + +L + R V T+ + Sbjct: 121 GQPRRIPLSATCVTMLEALPRSLDG---------------------RVFPVSMETVKQAY 159 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRY 362 +A A I TFH+ R + +QG L+ + + GH T RY Sbjct: 160 ERAVARAGIT-----NFTFHDLRHDALTRLAKQGLSILELRAISGHATANMLQRY 209 >UniRef50_C1XYN2 Site-specific recombinase XerD n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYN2_9DEIN Length = 387 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 134/374 (35%), Gaps = 62/374 (16%) Query: 22 KVNKVYWRYKHPVTGKFH-ALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGK 80 K + Y ++GK H EA E L R +L DRI Sbjct: 12 KRADGRYEYSLMISGKRHRGYAKTRKEAAKKLAE----LLVAYGRNLLPDPDRI------ 61 Query: 81 AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQL 139 T + +R+ + R+K T+ + G + + + L Sbjct: 62 --TLKEFCERWLTSVEHRVKP-----TTHYGYKVALEKHAIPILGDIAVQRLQPLHLTHL 114 Query: 140 LDEYIAAG------------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR 187 + + P ++V L ++A +G +P +NPA K P+ Sbjct: 115 YADLLKKRIHPNDPKRLKTLSPTTVRLVHRTLHAALEDAVRWGLLP--WNPADRVKPPQA 172 Query: 188 KITRQRLSLEEW---KKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDH 242 R + E W + +A+A H + LAL+TG R G++ +K++DI + Sbjct: 173 P----RYTGEVWTPEEVWRFLAEAQHSRLYALFFLALMTGMRRGELLGLKWADIDWQEGA 228 Query: 243 LHVIQE--KTGSK--IAIPLSLRLN---AINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + V Q K GSK + P + R + ++ + +V+ + R+ L T + Sbjct: 229 IWVRQNLTKAGSKRVVQSPKTYRSSRPVDVSSDVLEVLQQHREQQEKDRLGIGDAWTDEG 288 Query: 296 E-----RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ-- 348 G ++ + L F LA I + FH+ R L G+D + Sbjct: 289 WVFTTSVGTPIEPSNLRREF-----LAIIKRAKVKEIRFHDLRDTHVSLLALAGVDPKVV 343 Query: 349 -KLLGHKTQQQTDR 361 + +GH + T + Sbjct: 344 SERVGHASVAFTQQ 357 >UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacteraceae RepID=A8ZUN3_DESOH Length = 397 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 105/304 (34%), Gaps = 46/304 (15%) Query: 76 TSKGKAITTST-WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVR 134 ++ +A T W Y + + Y+ + L + G K + A+ Sbjct: 91 QTQKQAPTLDAFWDKDYLPWI------RSNKKSWYEDAINYQTHLAPKLGQKRLDAITQL 144 Query: 135 DIAQLLDEYIA----AGRPRMAQVV---RSVLIDVFKEAQHYGEVPPGYNPALATKQPRR 187 DI +LL G+P A + +L +F A +G+ G NP +PR Sbjct: 145 DIERLLSGLRKGTSKRGKPYAAATIKHQIVLLTRMFNVAARWGK-YTGPNPCKLIAKPRL 203 Query: 188 KITRQ-RLSLEEWKKIFDIADATHRYMGNAML-LALVTGQRLGDISRMKFSDIWDDH--L 243 + L+ +E ++ D+ + M + L TG R G++ R+ + D+ D L Sbjct: 204 NNQKTGFLTDDELTRLLDVLEQWPDRMSAGFIAFLLHTGLRRGELFRLTWQDVNMDRQTL 263 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 V K G +PLS + D + + ++ + + A+R Sbjct: 264 TVRDPKGGRDTVLPLSEKAI-------DALNSLPREHETPFVFY---GRNGAQRADFRHP 313 Query: 304 NTLTMNFSKARDLARIDWGEGSPATF--HEQRSLSERLYKEQGLD---TQKLLGHKTQQQ 358 RI P F H+ R G + Q LL HK+ Sbjct: 314 WY------------RIKQAAALPEGFRLHDLRHHFASALVSAGTNLYTVQALLTHKSAAM 361 Query: 359 TDRY 362 T RY Sbjct: 362 TQRY 365 >UniRef50_A0QEY2 Phage-related integrase n=5 Tax=Actinomycetales RepID=A0QEY2_MYCA1 Length = 402 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 55/324 (16%), Positives = 106/324 (32%), Gaps = 28/324 (8%) Query: 42 GTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKS 101 G ++ +A L Q ++ + +T W D + Sbjct: 49 GREHVQSFTRKVDAQQWLTNQTA---TIVAGTHVAPRDAKLTVQQWCDTWIEGYKVH--- 102 Query: 102 GDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVR-SVLI 160 R T ++ + + G ++ V + A G S L Sbjct: 103 ---REGTVREARTHIRQIVTEFGDTPLTQVRPSQVKAWTARLRADGMKASYIYALHSRLS 159 Query: 161 DVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLA 220 + +A H G + G NP P + ++ E +++ + DA ++ A+LL Sbjct: 160 QIMADAVHDGVL--GRNPCSRRTAPPMGKAKVYVATTE--QVWALHDAVPDHLKVAVLLG 215 Query: 221 LVTGQRLGDISRMKFSDIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRD 278 G R+ ++S ++ SD+ +H Q+ + + S I L +++ Sbjct: 216 AFAGLRVAEVSGLRVSDVDFIRGVVHPKQQWSDKPLKTEGSSAPIPIPQDLALLLSASVQ 275 Query: 279 YAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSER 338 + +V T + +A RD+ R G +FH+ R Sbjct: 276 KYPAEMMVTNGLGTDRCGPWIIERA---------IRDVRRGIDGLPEGFSFHDLRHYLAS 326 Query: 339 LYKEQGLD---TQKLLGHKTQQQT 359 L +G D Q L H + + T Sbjct: 327 LLIARGCDVKTVQARLRHSSAKTT 350 >UniRef50_C2RY84 Prophage LambdaBa04, site-specific recombinase, phage integrase n=4 Tax=Bacillus cereus group RepID=C2RY84_BACCE Length = 378 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 70/351 (19%), Positives = 124/351 (35%), Gaps = 43/351 (12%) Query: 31 KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDR 90 + P+TGK + + A A L Q L K +T S +L Sbjct: 20 RDPLTGKRKQKTVSGFKTKKEAERACNELIHQFNTGSLV--------DDKNLTLSEYLQE 71 Query: 91 YQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIAQLLDEYIAA-GR 148 + + +R T+ + V S + G + + + + I Sbjct: 72 WL----ENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLIDEELS 127 Query: 149 PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR-RKITRQRLSLEEWKKIFDIAD 207 P+ + + VL ++A + + NP + PR RK+ S+EE K A Sbjct: 128 PKYIEYIFIVLKGALEDAVKWELLYK--NPFEHVEIPRPRKVVNNTWSIEETKTFLTYAK 185 Query: 208 ATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQE-------------KT-G 251 + + LLAL TG R G++ +K+ D+ + + V + KT G Sbjct: 186 FDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKVSVTETLIYDELGFRFTEPKTSG 245 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 SK I + L S + + AY + + + G + TLT F Sbjct: 246 SKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSRED--GRPIYPRTLTTVFE 303 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQT 359 + A++ FH+ R L + G++ + + LGH + + T Sbjct: 304 RFIKTAQV-----PKIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTT 349 >UniRef50_Q5SI41 Putative phage integrase/recombinase n=1 Tax=Thermus thermophilus HB8 RepID=Q5SI41_THET8 Length = 293 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 108/299 (36%), Gaps = 31/299 (10%) Query: 83 TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLL-D 141 T + W + + R + NT V + + G K ++ + D+ L Sbjct: 4 TITDWAEAWLLDCRAR----GLSPNTIGYYRDAVKAMVKVVGDKPMAELTADDLRAFLVK 59 Query: 142 EYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLE-EWK 200 + P + A G + G +P + P+ + E E K Sbjct: 60 SFEDGLSPGGVAARWRAARAFVRWAVKEGAL--GVDPTGKIRPPKVPEADLPVVREWEVK 117 Query: 201 KIFDIADATHRYMGNAMLLALV--TGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPL 258 K+ A+ + + L+ ++ TG R ++ ++ SD+ + + V + K G+ +P+ Sbjct: 118 KLLAAAEMGKNPLRDKALVMVLWDTGLRASEVLGLRVSDVKAEAVRV-RRKGGAVQWVPV 176 Query: 259 SLRLNAINWSLRDVVARCR-DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLA 317 SL + R ++A R + S + F + G + + L M + + A Sbjct: 177 SL------PTYRAILAYARAERPPSDHDALFLTRS-----GLPLAYDGLKMVLRRLAEYA 225 Query: 318 RIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGHKTQQQTDRYHDDRGKGWSKV 373 + P H R + + G+ + Q +LGHK+ T Y K ++ Sbjct: 226 GLPPK---PP--HAFRRGAAVAMVKNGMPSYALQAMLGHKSPVMTAHYVRLAEKDLREI 279 >UniRef50_A4XLL4 Phage integrase family protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XLL4_CALS8 Length = 360 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 112/301 (37%), Gaps = 29/301 (9%) Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 ++ ++GK I + +LDR+ + + TY + + +R+ + ++ Sbjct: 47 QMLANEGKFIPLNEFLDRWL----EEYAKNYVAPKTYIKYKDSLKHVRKAFPSHTLQQLN 102 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR--RKIT 190 ++ + ++ + + SVL + K A + + NP K P+ + Sbjct: 103 TFELQKFFNQLSQTLSQASVRKIYSVLNNALKTAIKWNMLKE--NPLEFVKLPQKYEEKK 160 Query: 191 RQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQ- 247 + +E KK + D + A+ LAL G R G+I + + D +H+ Q Sbjct: 161 IKVWDIETVKKFLE--DIKDEKIHTAVTLALHAGLRAGEICGLTWDNVDFEKKCIHIKQA 218 Query: 248 -EKTGSKIAI-----PLSLRLNAINWSLRDVVARC--RDYAVSAYLVHFFRSTSQAERGA 299 +K G +I I S+R + L + + R + E G Sbjct: 219 LQKIGKEIIIKPPKSKTSIRTIYMTSYLYETLLEEYKRQEPLREAYKKLGNFVCIHETGN 278 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERLYKEQGLD--TQKLLGHKTQ 356 + T F K ++ + + E FH+ R + + L + Q ++LGH Sbjct: 279 PFCPDYFTHTFKKL--VSCLGYPEIR---FHDLRHTFATILLQAQTNPKIAAEILGHSNT 333 Query: 357 Q 357 + Sbjct: 334 K 334 >UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALG3_9BACT Length = 388 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 117/308 (37%), Gaps = 34/308 (11%) Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQ----DDRLKSGDIRLNTYKQKAKPVSLLRE 121 Q A+ +R+ T + +++ + + ++ D+ + + Sbjct: 41 QARAVYERLKTESRLGTLVPKPVRKHEPLFGELAEQYIRYADLHHKRKGDDTPRLKWWLD 100 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 G KL + + +++++ G +P VL V+ A + NP Sbjct: 101 AFGDKLALTLKPYMVEEVMEKMNKEGYKPATIARCLVVLKAVYNRAVKNEIIE--RNPIA 158 Query: 181 ATKQPRRKIT-RQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI- 238 P+ + + L+ ++ +++F+ + + +AL TG R G++ ++ + D+ Sbjct: 159 RVFAPKFDNSLVRYLTTDQEERLFEAL---PERLHPIVTVALHTGCRQGELLKLVWEDVD 215 Query: 239 -WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 + + K+G + ++ ++ + +L RD + Sbjct: 216 FNAGTIFLRDTKSGDSRRVLMNSKVQEVLLALPG-----RDTPGAPVFTDTL-------- 262 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERLYKEQGLDT--QKLLGHK 354 G ++ L +F +A A + +P FH+ R + + RL D Q LLGHK Sbjct: 263 GGPMEGRNLRRDFDRAIKKAGL-----APFRFHDLRHTFASRLAMMGANDRTLQTLLGHK 317 Query: 355 TQQQTDRY 362 +Q+ RY Sbjct: 318 SQRMILRY 325 >UniRef50_B9KYK7 Putative integrase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYK7_THERP Length = 359 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 60/363 (16%), Positives = 115/363 (31%), Gaps = 52/363 (14%) Query: 21 RKVNKVYWRYKHPVTGKFHAL-GTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 R+ + + G+ ++ G E E E +LA + Sbjct: 5 RRRKSGLFEARLQRDGRRFSVYGRTETEVRQKLAELERKLAIDQA------------PPV 52 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQ 138 +T +R+ A + R K TY + + G +S + Sbjct: 53 GRVTVRELCERWLATERKRWKP-----KTYYDYRWHLEHHVYPVLGRVQLSKLT----PD 103 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL-SLE 197 L + + R A + +L F +G + G NP P + L + Sbjct: 104 RLQRFFDSLSGRSANLTFRLLHRCFVVGIRWGFL--GQNPCDRVVPPAYQAPPIELPDAD 161 Query: 198 EWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--------------WDDHL 243 ++F + + L+L+ G R G+I+ +++SDI W Sbjct: 162 ALARLFRYCLESDDPYAGLVGLSLLCGLRRGEITALRWSDIDLQTGQLSVVRSGQWIAGR 221 Query: 244 HV-IQEKTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 V + KT + + I + + + + +VA+ + A A+ H G + Sbjct: 222 WVETEPKTRAGRRTIYVGEQGIRLLRRQKALVAQLKLQAGPAWQEHGLVFPG--PNGQPL 279 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQ 358 + + + + + P H R S L G+ + + LGH Sbjct: 280 SPSRVAAAVQRICKASGV-----PPLRHHSLRHASASLALLAGVPLPEVSRQLGHANVSI 334 Query: 359 TDR 361 T R Sbjct: 335 TAR 337 >UniRef50_UPI0001973B6A integrase family protein n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973B6A Length = 408 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 112/314 (35%), Gaps = 43/314 (13%) Query: 81 AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQL 139 ++T S W D + I + IR NT + + G K + + I L Sbjct: 65 SLTLSVWFDNWLEIYKYNV----IRDNTRVYYKQVFKKHIEPLLGHKRLKDITQLHIRAL 120 Query: 140 LDEYIAAGRP-RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLE 197 L E G + VR +L+D++ +A NPA + P+ +R S+E Sbjct: 121 LKELDKQGLQFQTQNKVRVMLLDMYNKAILDNYAV--RNPAKGIRLPKHNKRNKRVFSVE 178 Query: 198 EWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI------------------- 238 E FD T N +A+ TG R G++ + + DI Sbjct: 179 EQIDFFDCCKGTFY--DNLFTVAVNTGLRQGELCALTWDDIDLEKKEINVEKTLLYQKLE 236 Query: 239 --WDDHLHVIQEKTGSKIA-IPLSLRLN-AINWSL---RDVVARCRDYAVSAYLVHFFRS 291 H+ KT + +P++ + A+ L ++++R + F + Sbjct: 237 GDTGKTFHINPPKTKTSNRKVPINKQCEIALKKQLIQRNNIISRQSAKPEKGFENLLFTT 296 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERLYKEQGLDT--- 347 Q+ + + ++ + R + + T H R + + R + E G+ Sbjct: 297 KYATPICDQILIDAIKKIVNEI-NSVRSEIEQFEMFTPHCFRHTFATRCF-EAGISPKVI 354 Query: 348 QKLLGHKTQQQTDR 361 Q LGH T Q T Sbjct: 355 QTYLGHSTLQMTMD 368 >UniRef50_A3D8Y1 Phage integrase family protein n=4 Tax=Shewanella RepID=A3D8Y1_SHEB5 Length = 451 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 110/331 (33%), Gaps = 40/331 (12%) Query: 43 TNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDR-YQAIQDDRLKS 101 A A + + + S + ++++ ++ + + K Sbjct: 54 RTRILAPVSALTVKAAREKATGQLQAWREENTQPSMSASPRFDVFVEQTWKPMIFEHWKP 113 Query: 102 GDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLID 161 + + + + G + ++ R + DE + A L Sbjct: 114 -STKRSVLPALNRRL---LAHFGRYPLHMINHRMVQAWFDEISKTRK-GAANRNLDTLQS 168 Query: 162 VFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHR------YMGN 215 VFK A G NP + +Q +R++ + LS+ E +++ D + Sbjct: 169 VFKLALRQGHCLT--NPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCAD 226 Query: 216 AMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVAR 275 + L L+TG RL +I+ +K + + LH+ KTG+K+ I + D+++R Sbjct: 227 ILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLY--------IGQAAVDILSR 278 Query: 276 CRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSL 335 A + ++GA + + + R I+ H+ R Sbjct: 279 YHCKANTELFP--------MKQGASTSL--VQSLWLRLRKQIGIEDVR-----LHDLRHT 323 Query: 336 SERLYKEQGLD---TQKLLGHKTQQQTDRYH 363 G LLGHK T RY Sbjct: 324 FASYAVMDGCSIPMVASLLGHKKVTMTLRYT 354 >UniRef50_C4XNH1 Site-specific recombinase n=2 Tax=Desulfovibrio RepID=C4XNH1_DESMR Length = 346 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 117/308 (37%), Gaps = 44/308 (14%) Query: 74 IATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE-RAGMKLISAVD 132 +++ + + T LDRY +KS + ++ + +S L++ +++S + Sbjct: 62 VSSKEADSTTLEECLDRYAKDYLPAMKS-------HAREVRRISNLKKYPLVKRIMSTIR 114 Query: 133 VRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 +DIA+ G P ++ S++ VF A+ + NP +P+ R Sbjct: 115 TKDIAEFRKVREEGGAGPDTVRLDFSLISRVFVIAKSDWGMESLSNPVEHATKPKLPGGR 174 Query: 192 -QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQE 248 +RL +E K++ + LA+ T R +I +++ + +H+ Sbjct: 175 TRRLVGDEEKRLLAACQ--PPEFRAIVELAIATAMRRSEILGVEWDSVNLKQQTIHLADT 232 Query: 249 KTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTM 308 K S +PL R I L R+ + + +H +T+ Sbjct: 233 KNSSARTVPLDERAVEILSDLP------RNISGKIWDIH---------------EDTIDK 271 Query: 309 NFSKARDLARIDWGEGSPATFHEQRSLSE-RLYKEQ---GLDTQKLLGHKTQQQTDRYHD 364 +KA A I FH+ R + RL++ L+ ++ GHK+ Q RY Sbjct: 272 WMTKACTAAGIVGLR-----FHDLRHEATSRLFESTDLSDLEISEITGHKSLQSLKRYAH 326 Query: 365 DRGKGWSK 372 R K Sbjct: 327 LRTARLVK 334 >UniRef50_B6WRU7 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRU7_9DELT Length = 394 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 62/363 (17%), Positives = 108/363 (29%), Gaps = 41/363 (11%) Query: 22 KVNKVYWRYKHPVTG-----KFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 K W + + G K G ++ A +R ++ L + +R Sbjct: 6 KSRGNCWLARVVIDGQQVDSKVFPPGRSKGPEWMAAKT----WEVERKKEFLELRERQRK 61 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDI 136 + W + Y + + RE AG+ + + Sbjct: 62 TLTGFGLLLAWGEAYLDHVGRTMSRITLTEK-QTVMQALFGYCRE-AGLTGVEDLTRSTW 119 Query: 137 AQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGE--VPPGYNPALATKQPRRKITRQRL 194 L + + PR A V R L+ + A G P + P + + + + Sbjct: 120 TLFLTKVASERGPRRANVYRKNLLAAWNWAVDSGFPGFPQAHCPLERIRPFPVEAGVRYV 179 Query: 195 SLEE-WKKIFDIADATHRYMGNAMLLA-LVTGQRLGDISRMKFSDIW--DDHLHVIQEK- 249 EE K+ A MLL TG R G++ R+ +SD+ + ++ K Sbjct: 180 PPEEDVIKVLQQA----HGQDLVMLLTYYYTGARRGEVFRLLWSDVNFDSGSIRLVDHKG 235 Query: 250 ---TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTL 306 + +P+ L + V R V + + E Q Sbjct: 236 RDGSSRARWVPMHPELAKALRWWQAV----RPCVVDNVFMQEHCDGTLGEPFQQR----- 286 Query: 307 TMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG--LDTQKLLGHKTQQQTDRYHD 364 + + A + P FH R + + G Q L+GH TD Y Sbjct: 287 SKLMPRLCRKAGVK-----PFGFHALRHKAAAITFTAGGLAVAQTLMGHSRATTTDIYVR 341 Query: 365 DRG 367 G Sbjct: 342 SAG 344 >UniRef50_B8IH05 Integrase family protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IH05_METNO Length = 351 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 119/357 (33%), Gaps = 52/357 (14%) Query: 22 KVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 + WR H TGK GT E A E N ++++ Sbjct: 14 RDRHGKWRNYHRATGKPIKAPYGTAEFAA--EVAELNGLVSKKEPP-------------- 57 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQL 139 + T +D Y+ D+ + T + + + I ++D ++ + Sbjct: 58 RNGTLRGVMDEYKTTP----AFADLAMATRAGYERYFEIAKP-LHDVPIQSIDSAGLSVI 112 Query: 140 LDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL----S 195 D+ R A + SVL +F A V NPA K+ +R T+ + S Sbjct: 113 RDKVAMKRGWRTANYMLSVLSVLFGFAIERKYVTQ--NPAFVVKRAKRDKTKPKANRPWS 170 Query: 196 LEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIA 255 LEE K + A ++ + LA+ TG R D ++ I + KTG +I Sbjct: 171 LEERKAVLAEA---PSHLKVPLALAMFTGVRKRDALTLRKDAIRGG--AIATSKTGEEIF 225 Query: 256 IPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARD 315 I I+ L +++A H + + RG + K +D Sbjct: 226 I-------RIHPELAEILAGAP--------PHAAPTIAATSRGTPWTETGFNSVWDKFKD 270 Query: 316 LARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKG 369 + T H R + G D +++LG KT Y + K Sbjct: 271 KLEAEGRVRPGLTIHGLRHTLGGHLADAGCDLDTIRRVLGQKTLTMAQLYSERVKKE 327 >UniRef50_A1B4R3 Phage integrase family protein n=4 Tax=Rhodobacteraceae RepID=A1B4R3_PARDP Length = 307 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 87/263 (33%), Gaps = 26/263 (9%) Query: 104 IRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVF 163 ++ T + K + + G ++ I +L A R A + V + + Sbjct: 40 LKPRTKRDYQKYMEHIISIWGDLDPRKIETHHIYKLHQ--ANADHWRQANYLVQVFVVLL 97 Query: 164 KEAQHYGEVPPGY-NPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALV 222 A+ G + + NPA ++ +E + F+ + L++ Sbjct: 98 NHARLIGFLKKEHGNPAKGIPLFKQPGDGWEPWPDEVRAEFE--ELAPPRPRLVYELSIG 155 Query: 223 TGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVS 282 GQR+GD ++++ I D Q KT + +PL+ RL A +++ Sbjct: 156 LGQRIGDTHKIRWDHIKDGEYDFTQGKTDKPLLVPLTNRLAAYLSTVK------------ 203 Query: 283 AYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKE 342 + G T+T K A + E H R + + Sbjct: 204 KEGLTIVCGRD----GRPADYRTVTEEMRKI--KAAMKHPETQRYVTHGLRKNATIELYQ 257 Query: 343 QGLD---TQKLLGHKTQQQTDRY 362 G D + + GH + +Y Sbjct: 258 AGCDDEMVKAVTGHSGVEMLKKY 280 >UniRef50_A3WYT9 Integrase /recombinase n=2 Tax=Bradyrhizobiaceae RepID=A3WYT9_9BRAD Length = 316 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 100/303 (33%), Gaps = 35/303 (11%) Query: 72 DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAV 131 +R A T WL + D+ T KQ+ + + + AG + +S + Sbjct: 11 ERPQPKSEAARGTLEWL---WTLYRQSSAWADLSAATRKQRENIMKHVLKSAGHQPLSHI 67 Query: 132 DVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 I D A P A+ S + +F A V P K+P+RK + Sbjct: 68 TRASIVAGRDR--RAKTPSQAKNFISTVRGLFGWALDANLVNSD--PTAGVKRPKRKRSE 123 Query: 192 --QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEK 249 Q + ++ +K + R L L TG R GD +++ + D + + EK Sbjct: 124 GFQVWTEDDIEKFQKRWNRGTR-ERVMFDLFLFTGLRRGDAAQVGKQHVKDGSISINTEK 182 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 TG ++ IP+ L A +L + +A G + +L Sbjct: 183 TGIRVTIPIQPELQA---TLDAGPVGDLAFIATA-------------AGVPMTKESLGNA 226 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYHDDR 366 F A A I H R + +G + + L G Q Y Sbjct: 227 FRDACRSAGITKSA------HGLRKAAATNAANRGATERELEALFGWVGGQMASLYTRSV 280 Query: 367 GKG 369 + Sbjct: 281 NRE 283 >UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTV4_HALHL Length = 379 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 63/370 (17%), Positives = 128/370 (34%), Gaps = 49/370 (13%) Query: 9 NVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQI 67 + P L + Y +RY++ G + +A E + + A R+ Sbjct: 23 DRKAPGLIVEVRPTGSATYFYRYRNHA-------GLTRSCKLARFREISLKDARSLAREK 75 Query: 68 LAI------SDRIATSKGKAITTSTWLDR-YQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 +I ++ + T + + Y +S A Sbjct: 76 ASIVASGHDPQEEKNTRRASPTLKEYAEECYLPHAKSYKRSWKTDEIMLNHHA------L 129 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 G K +S ++ + ++++ + G P V +++ +FK A NP Sbjct: 130 PTLGTKKMSDINRNQVEAIMNDMKSRGYAPSTVDRVLTLISYMFKVAMDNEIPGVVSNPT 189 Query: 180 LATKQPRRKIT-RQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 K+P L+ EE ++ + A H ++ + + +A++TG R +I +F D Sbjct: 190 EKIKRPVIDNKIENYLTREEVNRMLEAARRRNHPHIYSIIRMAVLTGARKAEILSARFED 249 Query: 238 IW-DDHLH-VIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 D+ + + + K GS+ I L A+ ++++ + + Sbjct: 250 FDLDNKIWNIPKGKNGSRKVI---LAEKAVQM-VKELPKQEGTDLLFP------------ 293 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLG 352 + G + F + ID FH+ R L + G+ + ++LLG Sbjct: 294 QPGTDKPYQCIQKPFKAVLRDSGID----ESVRFHDLRHSYASLLVQGGVNIYEVKELLG 349 Query: 353 HKTQQQTDRY 362 H T RY Sbjct: 350 HSQITTTMRY 359 >UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XTG1_DESMR Length = 409 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 64/367 (17%), Positives = 127/367 (34%), Gaps = 32/367 (8%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAE-----QRTRQILAISD 72 + Y+ ++ GK G A A +A+ L E +R ++ D Sbjct: 20 RKDNRRPDRYFSIRYRCRGKNMEEGIGWASEGWTAEDASRILGEIRQNIRRGTGPQSLRD 79 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAV 131 ++G+A + + L +++K+ + + + +++ Sbjct: 80 MARAARGEADAAEAAPLTFGELARRYLDWAKRNKSSWKEDEYLLAKRVLPLFAHRPATSL 139 Query: 132 DVRDIAQLLDEYIAAG--RPRMAQVVRSVLIDVFKEAQHY------GEVP-PGYNPALAT 182 D Q D + AG P + V+ V+ A G + G NP Sbjct: 140 TRTDTEQFRDALLDAGGLSPMTIKHHLVVIRRVYNWAASTPVADDPGHMLFEGRNPVSGI 199 Query: 183 KQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 + P R R L+ EE ++ + A M + +LLAL+TG R +I + + D+ Sbjct: 200 RMPLVDNERIRFLTREEADRLLEAAGERLPEMHDIILLALLTGMRRQEILGLMWQDVDLV 259 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 + + +++ R ++ ++ R++A S ++ + Sbjct: 260 NRII---SIPARLTRAKRSRKAFLDEETAAMLQARREHAQSPFVFPGAVDGRRD------ 310 Query: 302 KANTLTMNFSKARDLARIDWGEGSP---ATFHEQRSLSERLYKEQGLDTQKLL---GHKT 355 + +T F + ++ G P FH R + G D L+ GHK+ Sbjct: 311 -PDHVTRQFDALVNGIGLNNGVTDPKHKVVFHTLRHTFASWLAQAGADIHHLMELTGHKS 369 Query: 356 QQQTDRY 362 RY Sbjct: 370 ISTMQRY 376 >UniRef50_A6SV87 Site-specific recombinase, phage integrase family n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SV87_JANMA Length = 328 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 120/342 (35%), Gaps = 56/342 (16%) Query: 32 HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRY 91 +P K + +A A+ A E + + R IL ++ T + LDRY Sbjct: 21 NPELSKTFS---TKAAAVHWADEQERLVKQGRGSAILLANNL---------TITAALDRY 68 Query: 92 QAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPR 150 K L ++ + + ++A+ D+ ++ G Sbjct: 69 AREVTPLKKGWKQELVRLRRWQS------NPLAQLTMPQLRAAELAKYRDQRLSDGLGAN 122 Query: 151 MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADAT 209 ++ +++ V++ A + NP ++P+ R +RL+ E + + Sbjct: 123 TVRLELALISHVYEVAIKDWGLEVLINPVRIIRKPKLPRGRERRLTEGEEDLLLEYCKKK 182 Query: 210 HRYM-GNAMLLALVTGQRLGDISRMKFSDIWDDHLHV--IQEKTGSKIAIPLSLRLNAIN 266 + ++LAL T R G+I+ + +I D + Q K G K +PLS R Sbjct: 183 GAALLRLVIILALETAMRRGEIASLHTENIDLDSRLIFLDQTKNGDKRKVPLSRRAQ--- 239 Query: 267 WSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA--QVKANTLTMNFSKARDLARIDWGEG 324 L ++ + G + + ++ FS+A + I Sbjct: 240 ----------------KELENYLCG----KHGELVPLHPDNISGAFSQACKVCGIS---- 275 Query: 325 SPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYH 363 T H+ R + E+G ++ + GHKT RY Sbjct: 276 -GLTLHDLRHEATSRLFEKGFNMMEVAAITGHKTLTMLKRYT 316 >UniRef50_C0XLK8 Phage integrase family site specific recombinase n=6 Tax=Lactobacillales RepID=C0XLK8_LACHI Length = 401 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 69/373 (18%), Positives = 136/373 (36%), Gaps = 49/373 (13%) Query: 18 LYSRKVNKVYWRY-KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 +K N Y+ + + GK + + + A EA R A Q+ +++ Sbjct: 21 TVRKKGNNWYYAFDTGTLNGKRSRIERSGGKKKKQA-EAPLRQALQKYENDGSVAKLTNM 79 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRD 135 + + W + Y +++ NT + + + G I ++ Sbjct: 80 NVQQ--YFMYWYENYVQ--------RELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAA 129 Query: 136 IAQLLDEYIA-AGRPRMAQVVRSVLIDVFKEAQ-HYGEVPPGYNPALATKQPR----RKI 189 + L+++ Q++ V+ + FK+A Y + PA P+ +I Sbjct: 130 LQNLVNDLGETKLAKHTVQIIVMVIKEGFKKAVYPYQLIKED--PARYIIMPKYHDDERI 187 Query: 190 TRQRL---SLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LH 244 TR++L ++ ++++I I ++ + + +A TG R G++ + ++++ + + Sbjct: 188 TRKKLKIITMNQYEQILSITPPSNPFY-IPLQIAFGTGMRRGEVCGLTWTNVDLNGHTIE 246 Query: 245 VIQ-----EKTGSKIAIPLSL---RLNAINWSLRDVVARCRDYAVSAYL-----VHFFRS 291 V Q K I P + R +I SL D++ + + + + L H Sbjct: 247 VKQAMMQESKGKFSIVTPKTTSSYRTISIGESLVDLLRQHKKHQMEERLRYGQYYHESNF 306 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQ 348 E G V NT+ + I G P FH R + E G D Q Sbjct: 307 VCTKENGIPVTPNTIKYQCDR------IQKELGFPFNFHSLRHTHATMLLEHGANIKDIQ 360 Query: 349 KLLGHKTQQQTDR 361 LGH T Sbjct: 361 ARLGHSRIATTMD 373 >UniRef50_C3R0L2 Integrase n=4 Tax=Bacteroidales RepID=C3R0L2_9BACE Length = 386 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 65/356 (18%), Positives = 120/356 (33%), Gaps = 61/356 (17%) Query: 39 HALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQA----- 93 HA+G + + R T IL + + +G +T W D Y Sbjct: 40 HAVGAAKHNRLTYNKAMEIRAERILTPPILEKENAKSEEQGNGLTWLQWCDDYIKWSVDC 99 Query: 94 -IQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ----LLDEYIAAGR 148 + ++ + V L+ V +I + ++Y + Sbjct: 100 GNCKKMIGHKNVVRKRIATYLRRVDK-----KDILLKDVSKDEICGLFDYMRNKYRNKRQ 154 Query: 149 PRMAQVVRS---------VLIDVFKEAQHYGEVPPGYNPALATKQ----PRRKITRQRLS 195 + + + +F +A G V +NP + + R+ L+ Sbjct: 155 IKTNGGRLADYTLLLFEETVKAIFNKAMREGLVK--FNPVHSLNKLERFHAPDKHREYLT 212 Query: 196 LEEWKKIFDI-AD-ATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DD--HLHVIQEK 249 EE + + A+ R + A L+ +T RLGD+ +++ DI D + +IQ K Sbjct: 213 PEELTRFLAVEAECENERTVQLAFGLSSMTALRLGDMQHLRWCDIKTIDGVPTISIIQRK 272 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 T IPL+ ++ D D S LV S + ++ Sbjct: 273 TKRPAIIPLNEMAQSLLPPRTD------DNPES--LVFHLVKKS----------DNVSKY 314 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRY 362 + ++ A I+ T+H R + L G D + +LGH + T+ Y Sbjct: 315 VRRLKEKAGIEKD----LTYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVY 366 >UniRef50_Q3Z840 Site-specific recombinase, phage integrase family n=6 Tax=Bacteria RepID=Q3Z840_DEHE1 Length = 435 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 71/364 (19%), Positives = 126/364 (34%), Gaps = 63/364 (17%) Query: 31 KHPVTGK----FHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTST 86 + P TGK +H + + EA +++ R++L D K ++ Sbjct: 21 RDPATGKRRQSWHTIKGTKKEA------------DKKLRELLTAQDNGIFVKQSKLSFGE 68 Query: 87 WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAA 146 WL+ + D +K + + + G +++ + + I + Sbjct: 69 WLENW---CRDYVKIQTTQRTFESYYQNIIGHIEPALGKVILTELTPQIIQAYYARQLEK 125 Query: 147 GRPRMAQVV--RSVL------IDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL-E 197 GR + RSVL K+A G + NPA A + PR + T + + Sbjct: 126 GRADGKGGLSARSVLYQHRIISKCLKQATKLGLI--MRNPADAVEPPRPRKTAISVPDKD 183 Query: 198 EWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI----------------WDD 241 E ++ D + T Y+ L L G R G+ +++ DI Sbjct: 184 ELPRLLDAFETTPYYVFYC--LLLYCGMRRGEALALRWKDIDLKQDTIQIAETAFTLRSG 241 Query: 242 HLHVIQEKTGSK---IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 + + KT I IP +++L + + + +H F T G Sbjct: 242 EYVIKEPKTPHSRRCIDIPPTMKLLLLEYKADQTAYYAK--LGVELGLHDFVFTR--PNG 297 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKT 355 + NT+T F KA A D H+ R L L + G+ + + LGH + Sbjct: 298 EPLNPNTVTHTFLKAVRKAGFD-----KLRLHDLRHLHATLMLQAGIHPKIVSERLGHAS 352 Query: 356 QQQT 359 T Sbjct: 353 INIT 356 >UniRef50_C1SH90 Site-specific recombinase XerD n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH90_9BACT Length = 399 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 68/365 (18%), Positives = 133/365 (36%), Gaps = 26/365 (7%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 R +K + + ++ R +Y+ TGK + A A+ +E ++AE+ Sbjct: 7 RGKKARLEIIFMFQGIRRYEQSLYYC----ETGKDTCKCQDCRSASALLSEIERKIAEKT 62 Query: 64 TRQILAISDRIATSKGKAITTST--WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 + D + + + ++ + D Y + ++S + +TYK + VS L Sbjct: 63 FKYETYFPDSKYVRENQQLHLNSDMFFDTYAELWLSSIES-SVAYSTYKTYSTAVSKLSS 121 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 +S + I Q + + + V +F+ A + NP Sbjct: 122 YFSRFKLSEIKPSHIQQYISN--SELSAKTIANYLGVFHSIFESAVRDDLLSK--NPCKH 177 Query: 182 TKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 K+PR + + S+EE I D H +M L TG R+G+ +K+SDI Sbjct: 178 VKKPRVQTEKVDPFSIEEVSMILDWMRQHHPHMTIIFALGFYTGMRVGEAIALKWSDIDF 237 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYA--VSAYLVHFFRSTSQAERG 298 H +I ++T +K I S + ++ + D++ +Y Y + G Sbjct: 238 KHHKIIVQRTITKNRIKESTK--TADYRVIDIIPMLDEYLHFQKQYTFMKSEWVTVTSYG 295 Query: 299 AQV--KANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERLYK--EQGLDTQKLLGH 353 N F + + + + R S + + E+ + +LGH Sbjct: 296 EPFTKTQNITEDYFKPCLKALGLRYRILN-----QMRHSFACMMLDAREEINWIKNMLGH 350 Query: 354 KTQQQ 358 + Q Sbjct: 351 SSLQM 355 >UniRef50_B2JD50 Integrase family protein n=2 Tax=Burkholderia RepID=B2JD50_BURP8 Length = 350 Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 132/378 (34%), Gaps = 56/378 (14%) Query: 5 PRKNNVSVPNLYPLYSRKVNKVYWRYKHPVT-----GKFHALGTNEAEAIAIATEANTRL 59 P+ N L + + Y+R + K LG EA Sbjct: 2 PKARNKENKGLPARWRQIHGAYYYRVPDGLESAWDGKKQFRLGKTLPEAYK--------- 52 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 A +DR+AT T LDRY + + + +I T A + L Sbjct: 53 ---------AWADRLATLDDAK-TIGELLDRY---ALEVVPNKEI--TTQAHNAVAIKRL 97 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 R G ++++ R + Q +D+ A+ VL + +A +G + +P Sbjct: 98 RAVLGAVPLTSIKPRHVYQYIDK---RSAKTAAKREIEVLSHAYTKAVEWGYL--DRHPF 152 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHR------YMGNAMLLALVTGQRLGDISRM 233 + + R R +E+W+ + ++ R + + + L+TG R GD+ R+ Sbjct: 153 KREVRLEGQKPRTR-YIEDWEIVECLSLEARRKSGSVLAIQAYIRIKLLTGLRRGDLLRL 211 Query: 234 KFSDIWDDHLHVIQEK----TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 SD+ DD +HV K TG ++ + L + R ++ +L Sbjct: 212 TMSDLKDDGIHVTPGKTENTTGKRLIYEWTDELRGAVAMAKSA----RPVTIAPWLFCNR 267 Query: 290 RSTS--QAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT 347 R E G +T+ NF + + T H+ R+ E Sbjct: 268 RGECYFNEETGRAGGWDTMWRNFM---ERVLGETKVKEHFTEHDMRAKCASD-AETLEHA 323 Query: 348 QKLLGHKTQQQTDR-YHD 364 Q LL H + T+R Y Sbjct: 324 QALLAHADGKVTERIYRR 341 >UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6_ALCBS Length = 367 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 73/360 (20%), Positives = 128/360 (35%), Gaps = 51/360 (14%) Query: 33 PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQ 92 P T K + +A +RT + I + + +T + L RY Sbjct: 22 PTTSKTF---RTKRDA---------EDWSRRTEDEMVRGVYIQRAPAERMTVADALKRYL 69 Query: 93 AIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIA------- 145 A + + + L + G ++A+ IA+ DE +A Sbjct: 70 AEVSPTKRPASAACDV-----RHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLDRKDA 124 Query: 146 ----AGRPRMAQVVR---SVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL--SL 196 RPR VR ++L +F A + NP ++P R+R Sbjct: 125 KGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGLPSNPVQNIRRPAPPPGRERRLNQT 184 Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI--QEKTGSKI 254 EE + I + ++ +G + LAL TG R +I+ ++ + I V + K + Sbjct: 185 EEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLETKNTAPR 244 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 +PLS AI L++ +A + + + R Q + + KA+ Sbjct: 245 TVPLSSTATAI---LQEALANPVRPIDTDLVFF-----GEPGRDGQRRPYNFNKPWLKAK 296 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLL---GHKTQQQTDRYHDDRGKGWS 371 + A + FH+ R + E GL Q++ GHK+ Q RY R + Sbjct: 297 ETAGMK-----ELHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTHLRAEDLV 351 >UniRef50_A9W5J9 Integrase family protein n=2 Tax=Alphaproteobacteria RepID=A9W5J9_METEP Length = 415 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 67/341 (19%), Positives = 114/341 (33%), Gaps = 48/341 (14%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPVTG---KFHALG----TNEAEAIAIATEANTRLAE 61 + +P + + W + P G LG + +A +A E + A Sbjct: 40 DAELPGFGYRL--RGERATWVVRPPRGGGRSSLITLGAAGLIDATDARRLAREHLLKAAL 97 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 + +R +K A+T D Y A ++RL R +T +S Sbjct: 98 GEDTRSARRVERAERTK-AALTVKEAFDLYTAAAEERL-----RPSTLANLRTHLSQHWR 151 Query: 122 RAGMKLISAVDVRDIAQLLDEYI----AAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 +++V D+A+ L + P+ A R L V+ A N Sbjct: 152 GLHALPLASVRRADVAEQLRKIARPAPDGSGPQAALRARRTLSTVYVWAIGEDLAET--N 209 Query: 178 PALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 P T P ++ R+R L+ +E ++ T Y LLAL TG R +++ +++ Sbjct: 210 PVTGTNPPAVEVRRERVLTDDELSAMWRACPPTGDYSRIIRLLAL-TGARRDEVAELQWG 268 Query: 237 DIWDD----HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 +I L + K G + LS D++A Y+ R Sbjct: 269 EIDTAAAVWRLPAARSKNGRPHVMHLSG-------PALDILAATPRIDGRPYVFGSGRGP 321 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR 333 FSK++ G G P H+ R Sbjct: 322 --------------FSGFSKSKARLDRQLGFGEPWVVHDLR 348 >UniRef50_C9KTZ2 Tyrosine type site-specific recombinase n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KTZ2_9BACE Length = 385 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 62/310 (20%), Positives = 109/310 (35%), Gaps = 58/310 (18%) Query: 84 TSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA-----GMKLISAVDVRDIAQ 138 + WL+ Y + +S +TY V++++ L+S +D + IA Sbjct: 86 FADWLNDY---IEGIRRSPSYSQSTYHNYRSTVNIIKAYLQYRRRPRYLMSKIDKKFIAG 142 Query: 139 LLD---------EYIAAGRPRMAQVV---RSVLIDVFKEAQHYGEVPPGYNPALAT---- 182 LLD + + + +++L+ + A + G + NP A Sbjct: 143 LLDFMQNTYRNTKSPDNPKEMSQCTLHLHQAILVRMLNAAVNEGIM--NSNPFYALGKHE 200 Query: 183 KQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--D 240 + +++ R L+ +E + + A T+ A L TG R D+ + + DI D Sbjct: 201 RIAKQQAERDYLTKDELLALAE-APTTNETTRRAFLFCCFTGLRYSDVCTLAWRDIKQVD 259 Query: 241 DHLHV---IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 L V KTG ++ IPL+ +A+ W + + Sbjct: 260 SGLVVSIRAMRKTGKQVTIPLNQ--SALKW---------------------LPDRNGCKP 296 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHK 354 G +V T + + + G ++H R L G D KLLGH Sbjct: 297 GQRVFDMTSLSACDRCLKKSAVAAGIEKNVSYHTSRHTFATLSLAAGGDLYTVGKLLGHT 356 Query: 355 TQQQTDRYHD 364 T Y D Sbjct: 357 NILSTQVYAD 366 >UniRef50_A6P1V8 Putative uncharacterized protein n=2 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P1V8_9BACE Length = 409 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 116/358 (32%), Gaps = 56/358 (15%) Query: 40 ALGTNEAEAIAIATEANTRLAEQRTRQILAISDR-IATSKGKAITTSTWLDRYQAIQDDR 98 + N AI + A T+ + +R I + + T + W + Sbjct: 27 GIDPNTGRAIQKSVSARTQAECKEKLAKAIRDNRGIPVNHNEDYTVAEWCRLWFETYSKP 86 Query: 99 LKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAAGRP-------- 149 + IR NT K + + G + + I ++ ++ GR Sbjct: 87 V----IRPNTAKTYENMIENHIVPAIGGVKLKRLTAIQIQKMYNDSKTNGRVQRFEKKTD 142 Query: 150 -----RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFD 204 + + VL K+A +P YNP + P ++ + E ++ Sbjct: 143 TALSGSTVRRIHMVLSSALKQAVKERIIP--YNPCDNCRIPPKEKKEMAIIPSEKLGVYL 200 Query: 205 IADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW---------------DDHLHVIQEK 249 +A + L L +G R G++ +++ D+ D L + + K Sbjct: 201 S-EAEKYGVLPMFFLELSSGLRRGELLALRWDDLNVKDRILSVSKQVTRIDGELVITEPK 259 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 T + + R A++ D++ R + ++ T + ++ Sbjct: 260 TKNSV------RKVALSQQAVDILVREHEQHPDNPILFPSPRTGGYW-----SPDAVSRI 308 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL---LGHKTQQQT-DRYH 363 K A I+ FH+ R + G+D + L LGH + T D Y Sbjct: 309 NRKLLAKAGIE----ERVRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYT 362 >UniRef50_Q2NBN1 Site-specific recombinase, phage integrase family protein n=3 Tax=cellular organisms RepID=Q2NBN1_ERYLH Length = 390 Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 70/351 (19%), Positives = 118/351 (33%), Gaps = 41/351 (11%) Query: 21 RKVNKVYWRYKHPVTGK--FHALG-TNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 R +W + GK LG T+E EA +A LAE + R Sbjct: 45 RPSGNYFWFVRLRHRGKHRRITLGRTDELEAGLARAQARRILAETALD---GLPKRAVVK 101 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIA 137 T + +++ Y K + N + + + G ++ + DI Sbjct: 102 --ATPTMTDFVEAYWDDLSRVWKPSTTKRN-WDAWRLDI---KPTFGDTRVADILPADIH 155 Query: 138 QLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLE 197 + D A VL + K A+ PG NP + +R+ + L+ Sbjct: 156 RWRDG-CAGESEVKFNRAVPVLSALLKYAEALKMRRPGSNPCRGMPRYKRQSVERYLTPA 214 Query: 198 EWKKIFDI---ADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKI 254 E+++I A+A L L TG R+G+I +++ + L + KTG K+ Sbjct: 215 EYRRIGAALREAEADRPAEVAIARLLLFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKV 274 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 +N +DV+A S + V + F + Sbjct: 275 I--------WLNSQAQDVLAVIERREDSELVFPNKTGKR------PVNFDQWWFVFRRRC 320 Query: 315 DLARIDWGEGSPATFHEQR-SLSERLYKEQGLDTQ--KLLGHKTQQQTDRY 362 L + H+ R S + E + KLLGHK + T +Y Sbjct: 321 ALPDVR--------IHDLRHSFASTAIMENVPLSTIGKLLGHKLVETTAKY 363 >UniRef50_A2P3A8 Integrase n=3 Tax=Vibrionaceae RepID=A2P3A8_VIBCH Length = 412 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 112/318 (35%), Gaps = 21/318 (6%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M+A P + L + K + K P T K L + AI A + + Sbjct: 1 MSALPTGVEIHAGQLRIWFMYKGKRQRESLKCPPTPKNIKLAASRRTAICHAIQTGQFIY 60 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 ++ + + S K IT DR+ LK ++ T K + V + Sbjct: 61 KEWFPESKKANQ---YSDKKDITIKELFDRWLD-----LKVIEVTPATIKNYQQRVKQVY 112 Query: 121 ERAGMK-LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 L+S V + +L + P A L +F A + G +PA Sbjct: 113 WHLPETTLVSEVTQEKLLELRKRFTETCSPSTANTYMRTLKGIFSFAINSGY----SDPA 168 Query: 180 L--ATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 L K+ + + + Q LS EE++++ + N +A+ TG R G++ + + Sbjct: 169 LLNGIKELKTQKRKPQPLSEEEFQRVIEHCQHEQD--ANFWTVAVYTGLRHGELMALAWE 226 Query: 237 DI--WDDHLHVIQEKT-GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS 293 DI + + V + T + +P ++ L +A + +++ Sbjct: 227 DIDLENGTITVRRNLTLEGRFKLPKTISGERTVNLLNPALAALKAQMKWTFMLPELEIDV 286 Query: 294 QAERGAQVKANTLTMNFS 311 +++ + FS Sbjct: 287 LQREYGKLQRQFIRPVFS 304 >UniRef50_Q1GLB1 Phage integrase n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLB1_SILST Length = 197 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 26/207 (12%) Query: 172 VPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDIS 231 + NP + + R S ++ I + LAL TGQR D++ Sbjct: 1 MRQTGNPNTQVQPADSRYERA-TSGGQFTTIAAYREHADGLALLIFELALGTGQRASDLT 59 Query: 232 RMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 RM++ I + V Q KT + IP + RL+++ + D + S +++ Sbjct: 60 RMEWGHIEVGRIWVTQGKTNVRFWIPFTKRLSSVLAGV--------DTSKSRFIL----- 106 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLL 351 E G Q+ + L + R A + + H R + E G ++ Sbjct: 107 --TDESGHQLNYDQLQKQVIRVRRAAGL-----MDYSLHGLRDSAAGELAEAGCTDHQIA 159 Query: 352 ---GHKTQQQTDRYHDDRGKGWSKVAL 375 GHK+ +Y +G ++A+ Sbjct: 160 AITGHKSLSMVQKY--SKGASQKRLAI 184 >UniRef50_A6NQW5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQW5_9BACE Length = 301 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 101/291 (34%), Gaps = 27/291 (9%) Query: 88 LDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAG 147 L ++ + D K G IR ++ Q + + +SA+ D+ + + A+ Sbjct: 3 LGQWFPLWLDTYKRGVIRDSSLHQLELLARRIPADLMKRPLSAILPMDLQSFFNSFAASA 62 Query: 148 RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT-RQRLSLEEWKKIFDIA 206 + +++ +F +A NP K P+ + R+ + +E K I A Sbjct: 63 SKSYVDKMGTLVNSLFAQAVENELC--AKNPMRHVKIPKVQEQCRESFTFDELKLILRYA 120 Query: 207 DA-THRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAI 265 T + A++ L+TG R ++ +K+SD+ D L V + + L + Sbjct: 121 LGYTPLRVSVAVITLLLTGLRRSELLGLKWSDLTADTLTVNRS-------VYLESGKPKV 173 Query: 266 NWSLRDVVARCRDYAVSAYLVHFFRSTSQAE-------RGAQVKANTLTM---NFSKARD 315 ++ R + L + + + G + F + Sbjct: 174 EEHRAKTISSLRTIPLLPELSYKLHTLPKRSEFIFCSRNGTLWHPRNFSRDYTTFFRHLR 233 Query: 316 LARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYH 363 A D SP H R L G D Q LLGH + T RY Sbjct: 234 EAEPDARRLSP---HCCRHTFATLSLASGADIRTVQALLGHANIKTTSRYT 281 >UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella RepID=A5I9N5_LEGPC Length = 407 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 68/358 (18%), Positives = 134/358 (37%), Gaps = 47/358 (13%) Query: 28 WRYKHPVTG--KFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTS 85 W Y++ + G LG A +++ A L++ R + + A + T Sbjct: 39 WIYRYKINGVTTKFTLGHYPAMSLSNAKRRFLELSQMRREGVDPKTVIQAQEEQDNNTVD 98 Query: 86 TWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIA 145 + ++ + + + + G K + V +DI+ LD + Sbjct: 99 KLALNWYTNYIEKHVKRPLVIKRQID-----NDIIPLLGKKKLDDVQTKDISDALDTIVK 153 Query: 146 AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK--------QPRRKITRQRLSLE 197 G +A S + +F A G +NPA + +P+ ++ L+LE Sbjct: 154 RGARILANRTLSSIKQMFNYAVSRGY--TQFNPASNIRSRDIGGIEKPKERV----LTLE 207 Query: 198 EWKKIFDIADATHRYM----GNAMLLALVTGQRLGDISRMKFSDI-WDDHLHVIQEKTGS 252 E K ++ D+ M A+ L L+TG R ++ + +I ++ L I S Sbjct: 208 EIKALWLFLDSDLTQMSTQTRIAIKLLLLTGVRTVELRLASWHEIDFEASLWTIPA-LHS 266 Query: 253 KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSK 312 K +I + L+ + SL + + + S Y++ + N L + Sbjct: 267 KASIIHKVHLSKLAKSL---FLQLKPLSHSDYVLTGVDGFH------PITENALPRAIKR 317 Query: 313 ARDLARI-DWGEGSPATFHEQ-RSLSERLYKEQGLDT---QKLLGHKTQQQTDRYHDD 365 ++ I DW T H+ R+ + +L + +D +K LGHK + Y+ + Sbjct: 318 IQEKLGIPDW------TAHDLRRTFATQLGETLQIDPVVIEKCLGHKMPRIMATYNRN 369 >UniRef50_Q30XD6 Site-specific recombinase XerD-like n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XD6_DESDG Length = 417 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 72/373 (19%), Positives = 137/373 (36%), Gaps = 45/373 (12%) Query: 27 YWRYKHPVTGK--FHALG-------TNEAEA-----IAIATEANTRLAEQRTRQILAISD 72 Y+ ++ +G+ LG ++A A AT Q R+ A Sbjct: 30 YYTIRYQRSGQRVEEGLGWASEGWTLDKAVATLAKLREAATTGEGETRLQEKRK--AAEA 87 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 + A + K IT +T L Y ++ + + + QK L G I V Sbjct: 88 QKALKEKKNITFATILAGYLEAGTEKKNTRVLAV----QKGYGDKWLLPDLGPLPIRQVT 143 Query: 133 VRDIAQLLDEYIAAGRPR-MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 + Q+ + +AAGR + A + + A + G NP ++ R +R Sbjct: 144 AGHLEQIQKQILAAGRSKQTAAHAIDLFRAAWNWAYKRELIE-GRNPVTQMERIRPDGSR 202 Query: 192 QRL-SLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHVIQE 248 +R S E + + + L A TG RLG+++ + + + D ++ I Sbjct: 203 ERFFSAAELQSLLGWLHRKDIHTYRITLCAAHTGARLGELAHLTWDRVNLPDRQINFIHT 262 Query: 249 KTGSKIAIPLSLRLNAINWSLRDVVARCRDYAV-------------SAYLVHFFRSTSQA 295 K+G ++P++ L+ + L ++ + + + R Sbjct: 263 KSGVPRSVPMTPELHDMFSDLLMTMSSAKTSGIPLGTNYTPAGLAGKIVFLTKARKPFFK 322 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGE---GSPATFHEQRSLSERLYKEQGLDT---QK 349 E +++ +T T F A +++ G + TFH R + L G+D Q Sbjct: 323 EIEGRLRTDTPT-AFRSALSALKLNEGHATAKTKLTFHCLRHTAATLLLSNGVDPVTVQN 381 Query: 350 LLGHKTQQQTDRY 362 ++G T + +RY Sbjct: 382 IMGWSTLKMLERY 394 >UniRef50_Q2IUV8 Phage integrase n=1 Tax=Rhodopseudomonas palustris HaA2 RepID=Q2IUV8_RHOP2 Length = 450 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 64/342 (18%), Positives = 119/342 (34%), Gaps = 35/342 (10%) Query: 45 EAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDI 104 + A A+ R E+ ++ I ++ K T + L+RY + L S Sbjct: 86 RRLKLTGADPADQRRVERAANLARIRAEEI-ENRRKDDTVALVLERYFKSHVNGLLSA-- 142 Query: 105 RLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFK 164 ++ + ++ + I V D +LL+ +P +A R+ FK Sbjct: 143 -----RETKRILTRELSGWARRRIDHVSRADAVKLLEAIQERDKPILANRTRAHASKFFK 197 Query: 165 EAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVT 223 G + NP T + ++I R R LS E + + D + + L+ Sbjct: 198 WCIEKGLLE--INPFEHTTRAAKEIARDRVLSDAELRILLLANDRLEWPWREYIAVLLML 255 Query: 224 GQRLGDISRMKFSDIWDD------HLHVIQEKTGSKIAIPLSLRLNAINWSLR-----DV 272 GQR +++ M++ + D + + K G A+PL + +I S+ ++ Sbjct: 256 GQRREEVAGMRWDALDLDCAEPVWLMAASRYKNGQPHAVPLPAAVVSILRSIGRMHFTEI 315 Query: 273 VARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS-------KARDLARIDWGEGS 325 + S ++ F + A G LT KAR + E Sbjct: 316 IDGAPTLKESPFV--FTTTGRTAISGFSKAKVQLTGIMHEIACGEAKARGESTATI-EKI 372 Query: 326 PATFHEQRSLSERLYKEQGLDT---QKLLGHKTQQQTDRYHD 364 H+ R ++ +++LGHK Q Y Sbjct: 373 EWRLHDLRRTMATTMARLKINVVTIERVLGHKMQGVMAVYQR 414 >UniRef50_B2JC71 Integrase family protein n=17 Tax=Bacteria RepID=B2JC71_BURP8 Length = 373 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 74/376 (19%), Positives = 137/376 (36%), Gaps = 46/376 (12%) Query: 28 WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTW 87 ++++ V + HA +++ AT+A +A ++ K K T Sbjct: 10 YQWRAQVRRRGHA-----SQSKTFATKAEAESWANMIESEMAWGAWVSRGKAKTATLCQA 64 Query: 88 LDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAG 147 L RY+ R + + K + + A+ DIA+L DE++ A Sbjct: 65 LRRYETEISRRKRGSVQEASVLKIW------METALAKCPLVAIRTLDIAKLRDEWLEAY 118 Query: 148 RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-----LSLEEWKKI 202 +P +VL VF A+ + NP ++P TR R + LE +++ Sbjct: 119 KPATVLRRLAVLSHVFSVARKEWGMESLPNPVELVRKPEPGDTRTRRLVAEVHLETAERV 178 Query: 203 FD-------------IADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEK 249 + +A + + + LA+ T R G+I + + + H + Sbjct: 179 RNPDRRAQDGELDRVVAASESALLPPIVWLAVETALRRGEIVSLTWEYVDLPHRVIHLPA 238 Query: 250 TGSKIA--IPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLT 307 TG+ A +PLS R AI S++D R R + + RG + Sbjct: 239 TGNGTARDVPLSSRAIAILRSMKD---RGRAKKSAPRDGAERSNFIFDIRGDAIT-RAFE 294 Query: 308 MNFSKARDL--ARIDWGEGSP-------ATFHEQRSLSE-RLYKEQG-LDTQKLLGHKTQ 356 ++AR + G+P F + R + RL + ++ GHK Sbjct: 295 RAVARARKIYEDECRMARGTPDERFLVDLRFQDLRHEAACRLATIFPLHELARITGHKDL 354 Query: 357 QQTDRYHDDRGKGWSK 372 + RY+ + + W+ Sbjct: 355 RMLTRYYPQQEEDWAH 370 >UniRef50_Q04676 Rci protein n=10 Tax=Enterobacteriaceae RepID=Q04676_ECOLX Length = 374 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 109/309 (35%), Gaps = 52/309 (16%) Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER-AGMKLISAVDV 133 K + +T S LD+Y LK+ I + Q+ V++++ + + + Sbjct: 3 QKIKIRKMTISRALDKY-------LKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITT 55 Query: 134 RDIAQLLDEYIAAGRPRMAQVV--------RSVLIDVFKEA-QHYGEVPPGYNPALATKQ 184 DIA D+ +A PR + + ++L +F A +G NP ++ Sbjct: 56 VDIANYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRM--NPVELVRK 113 Query: 185 PRRK-ITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDD 241 P+ +RL+ E +++ ++ + LAL T R G+I +++ D+ Sbjct: 114 PKISSGRDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHG 173 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 H+ K G+ +PLS + R+ + + A R Sbjct: 174 VAHLPTTKNGAPRDVPLSRKA-------RNYLQMLPTQLNGNIFSYTSSGFKSAWR---- 222 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG----LDTQKLLGHKTQQ 357 + + FH+ R + + E G ++ + GH++ Sbjct: 223 ---------------TALQELKIENLHFHDLRHEAISRFFELGTLNVIEVAAISGHRSLN 267 Query: 358 QTDRYHDDR 366 RY R Sbjct: 268 MLKRYTHLR 276 >UniRef50_B1ZY20 Integrase family protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZY20_OPITP Length = 391 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 73/350 (20%), Positives = 125/350 (35%), Gaps = 29/350 (8%) Query: 35 TGKFHALGTNEAEAIAIATEANTRLAEQRTRQILA-ISDRIATSKGKAITTSTWLDRYQA 93 + K ALG A RL E + R++L+ I + + T +L R+ Sbjct: 32 SDKRKALGIANQWERAAKLAGQKRLGEAQARRVLSDIYEITNDEPLPSATARDFLTRWAE 91 Query: 94 IQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQ 153 +L + + YKQ + + IS + DI DE + A Sbjct: 92 --RRKLDTANRTFQAYKQVVRDFLKSLGPRAERDISQISKTDIVTYRDEVLTRTSIATAN 149 Query: 154 VVRSVLIDVFKEAQHYGEVPPGY-NPALATKQPR-RKITRQRLSLEEWKKIFDIADATHR 211 L A G + A ++ + R+ +L E K I A A R Sbjct: 150 KSLKYLRVALGAAYKDGLTQDNAASKVDAIRRRDDERKQRRPFTLGELKAILANASAEWR 209 Query: 212 YMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSL 269 + +L TGQRL DI+ + + D+ + + + KTG ++ IP++ L A ++ Sbjct: 210 GL---ILFGFYTGQRLSDIANLTWQNLDLEREVIRFVTGKTGRQMEIPIAAPLLAHIETM 266 Query: 270 RDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN-FSKARDLARIDWGEGSPA- 327 + + S R +Q + L +KAR + EG+PA Sbjct: 267 PA--SDDPSAPLFPESSSVAAGESADSRLSQHFYDLLVAAGLAKARRRDK-QRDEGAPAH 323 Query: 328 -----------TFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYH 363 +FH R + L K G+ ++GH ++ + Y Sbjct: 324 GRSRRRTVHEISFHSLRHTATSLLKNAGVSEAVAMDIIGHDSEAISRHYT 373 >UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Enterobacteriaceae RepID=A7FCB1_YERP3 Length = 375 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 112/303 (36%), Gaps = 48/303 (15%) Query: 76 TSKGKAITTSTWLDRYQ---AIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 ++ K I S LD Y + R+NT K+ L + + Sbjct: 2 KTRVKNIPLSKALDIYLDKISFFKKGGMQEHYRVNTIKKYK---------LSTLLTNNIT 52 Query: 133 VRDIAQLLDEYIAAGRPR-------MAQVVRSVLIDVFKEAQ-HYGEVPPGYNPALATKQ 184 DIA+ DE + +P ++ ++L +FK +G NP L ++ Sbjct: 53 TVDIAEYRDERLKTVKPNGKTISSNTVRLELALLSHLFKVGIVEWGIARE--NPVLLVRK 110 Query: 185 PR-RKITRQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWD 240 P+ + +R+ E +++ A + + + + LA+ T R G+I +++ D+ Sbjct: 111 PKASEGRNRRVQPAEHRRLIRYADEHSTGECASIINLAIETAMRQGEILSLQWEYVDLRQ 170 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 H+ + K G+ +PLS + R+++ +C + + + A R Sbjct: 171 GVAHLPETKNGTSRDVPLSAKA-------REILRKCSPKSSGSVFSYTSNGFKSAWRCII 223 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTD 360 +K+ ++F R HE S + ++ + GHK+ Sbjct: 224 IKSGIKDLHFHDLR---------------HEGVSRFVESGRLNIMEVAAISGHKSLSMLK 268 Query: 361 RYH 363 RY Sbjct: 269 RYT 271 >UniRef50_B6R3I2 Site-specific recombinase, phage integrase family n=2 Tax=Pseudovibrio sp. JE062 RepID=B6R3I2_9RHOB Length = 426 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 104/321 (32%), Gaps = 35/321 (10%) Query: 56 NTRLAEQRTRQILAISDRIA-----TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYK 110 N A + LA +R+ + T +D+Y+ ++ T Sbjct: 31 NLEKAPIGSAAFLAECERLTNLMSVADTSRPGTLGNLIDKYR----ASSAFLELADRTKS 86 Query: 111 QKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYG 170 K L ++ I +L D+ + R A V+ VL +F + G Sbjct: 87 DYQKVFDYL-APIHNTPLTRFTSPFIVKLRDKAEEQRKRRFANYVKQVLSVLFSWGKERG 145 Query: 171 EVPPGYNPAL---ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRL 227 V NPAL + ++P+ R ++ + I + M A+ L + TG Sbjct: 146 FVKE--NPALGVKSIRKPKNAPIANRPWTDDERGI--VLKHAPPQMVPALTLMMYTGLGP 201 Query: 228 GDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVH 287 D + + + + KTG+ + P + L+ + D H Sbjct: 202 QDALTLSKQQYQNGFISTRRAKTGAPVFWP-------VIAPLKAALDDAPD--------H 246 Query: 288 FFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT 347 + RG + ++ K R T + R + +E GL+ Sbjct: 247 GAPTLCTNSRGQPWTVSGFRASWRKLRIQLEDKNLIKPGLTLYGLRHTVATILREIGLND 306 Query: 348 QKL---LGHKTQQQTDRYHDD 365 + L LGH+T+ Y Sbjct: 307 RDLAAALGHETEAMARLYAKG 327 >UniRef50_Q02VM2 Integrase n=13 Tax=Bacilli RepID=Q02VM2_LACLS Length = 349 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 60/326 (18%), Positives = 109/326 (33%), Gaps = 39/326 (11%) Query: 43 TNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSG 102 T ++EA A + + + + + I D T S + D + + +K Sbjct: 32 TTKSEAKTWAHQ--QEVLKGKGKNIAKRED----------TFSDFFDTWV----NTVKRN 75 Query: 103 DIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDV 162 D+R T+ + V+++R IS +D + +DEY + V + Sbjct: 76 DVRPATFTNYVRTVTIVRSLFKDIKISNLDDLVVQMKIDEYGKNHSRKTTTEVLLKIRTA 135 Query: 163 FKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHR-YMGNAMLLAL 221 A G + + + T+ + + LS+ E K + + + L+AL Sbjct: 136 LHYAYARGLLDNDFGSLVKTRGKELEKRNKPLSINEMKVLRNYLLSHSEDEFNIITLIAL 195 Query: 222 VTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAV 281 TG R G+I +K DI + +H+ + I + + S R + Sbjct: 196 ETGARRGEILGLKPEDISSNGIHITRS-------ISPTNDDTRLKTS-----KSKRTVPI 243 Query: 282 SAYLVHFFRSTSQAERGAQVKANTL--TMNFSKARDLARIDWGEGSPATFHEQRSLSERL 339 + + RS G + + K +I TFH R Sbjct: 244 TYEVYTIIRSVEPKSNGYLFDPDGFQQSKRLKKLLAELKISI-----TTFHGLRDTIASF 298 Query: 340 YKEQGLD---TQKLLGHKTQQQTDRY 362 + K+LGH Q T Y Sbjct: 299 LFSNDIRLDYVSKMLGHSNLQTTMNY 324 >UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LV83_SYNAS Length = 364 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 102/295 (34%), Gaps = 30/295 (10%) Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIA 137 G + +D+Y K+ ++YK+ V+ L+ G K ++ + I+ Sbjct: 54 PGDSYKFKDLMDKYMTEYSAVNKAA----SSYKRDKSIVTQLKSYFGEKYLTELTPAMIS 109 Query: 138 QLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQ-HYGEVPPGYNPALATKQPRRKITRQR-L 194 + + G R + F A +G NP K+ R +R L Sbjct: 110 DYKVKRRSDGVSSRTINYELITMSHAFNLAIREWGL--ANENPVSKVKKDRVTNKIERWL 167 Query: 195 SLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKI 254 + EE + + +++ + ++ A+ TG R +I +K+S + V + ++ Sbjct: 168 TSEEETNLLK---ESPKWLQDIIIFAIHTGLRQSEILDLKWSQVDMKRRTVTIHEQKNRC 224 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 L L A+ V + R + F +T +G ++ L F A Sbjct: 225 IDTLPLNETAM------TVLKNRHNPELPLEGYVFPNTLGDRKGNRL----LLKAFYVAL 274 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDR 366 A I FH+ R +G D QKL KT RY Sbjct: 275 KKANISNFR-----FHDLRHTFATRLIRKGADLYTVQKLGRWKTVTMVQRYAHHH 324 >UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PGN2_9FIRM Length = 526 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 72/401 (17%), Positives = 138/401 (34%), Gaps = 57/401 (14%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M R +K SV R+ N W + + L + E +L Sbjct: 1 MGKRRKKGEGSV--------RQRNDGRWEGRVVIGYDEKGLPRTKNVLAKTKRECQEKLK 52 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLL 119 + R + ++++ WLD + + +K IR T + + Sbjct: 53 QLRETMTGSKTEKVRPEMP----FGEWLDFW---YQNYVKP-QIRPTTQANYEAKIYQHI 104 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGR------------PRMAQVVRSVLIDVFKEAQ 167 G ++ + +D+ Q AGR M + + + ++A Sbjct: 105 IPELGKIPLNQLAQKDLQQFYARMKTAGRLIRTEQFGKGLSDSMVRGLHAACRSALEKAV 164 Query: 168 HYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQR 226 G + NPA+ K P ++ + L EE ++ A A + LL L TG R Sbjct: 165 QEGLIRT--NPAVGCKLPPKRGREMQVLGREELQRFLIQAQAEGYF--ELFLLDLCTGLR 220 Query: 227 LGDISRMKFSDI--WDDHLHVIQE----KTGSKIAIPLS---LRLNAINWSLRDVVARCR 277 G++ +++ D+ L V ++ K ++++P + +R + + +V+ R Sbjct: 221 RGELLALQWDDLDFRTGALTVNKQVYEVKGRLQVSVPKTRASIRRLVLPPGVVEVLRAYR 280 Query: 278 DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSE 337 + S ++ S + + + + A FH+ R Sbjct: 281 ETVDSRWMF-----PSPVKEDVPMTPGAVRRRLQIILERAGCKRIR-----FHDLRHTFA 330 Query: 338 RLYKEQGLDTQ---KLLGHKTQQQT-DRYHDDRGKGWSKVA 374 L E G+D + +LGH + T D Y G S+ A Sbjct: 331 TLSLENGMDVKTLSAMLGHVSAATTLDIYTHVTGDMQSEAA 371 >UniRef50_Q2GAQ9 Phage integrase n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GAQ9_NOVAD Length = 383 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 106/284 (37%), Gaps = 28/284 (9%) Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLI----SAVD 132 S A T R+Q ++ + +T + + E+ G + Sbjct: 57 SDEPADTVKGLSTRWQRSREWKA----FAESTRSLWGDCCTKIEEKWGKVPLRVFGDPRT 112 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 I + DE A R A VL + K G + NPA + + R+ Sbjct: 113 TSKIVKWRDEMADANGLRTADEHVKVLSMMAKYGLLQGLM--ACNPAQPVPRLWKGGNRE 170 Query: 193 RLS-LEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTG 251 + L E FD +++ +A LA TG R D+ ++ +++D H+ +K Sbjct: 171 EIIWLPEDCAAFDAV--APQWLVDARKLAEFTGMRRADLCALRRDEVFDTHIGRTAKKKS 228 Query: 252 S----KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLT 307 + + +P+ L + L ++ AR R + LV G V+ TL+ Sbjct: 229 AGKRQRTVMPIIPGLREL---LEELRARTRKPGIETVLVGA--------HGNPVQPATLS 277 Query: 308 MNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLL 351 F+K R LA G A + ++ ++ L+ +G KL+ Sbjct: 278 AQFNKYRSLANDGQGIVHRAAYDDEADKAKHLHDLRGTFATKLM 321 >UniRef50_A9FYM3 Integrase n=1 Tax=Phaeobacter gallaeciensis BS107 RepID=A9FYM3_9RHOB Length = 370 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 97/268 (36%), Gaps = 24/268 (8%) Query: 103 DIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDV 162 ++ T + K E I +D IA + D+ R A +VR++L +V Sbjct: 81 NLAEATRRDYRKCAD-FLEPIRDTPIHVIDTPLIAGIHDKAAKKIGWRRANMVRTLLSEV 139 Query: 163 FKEAQHYGEVPPGY-NPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLA 220 F+ G + + + ++PR + R ++EE + A ++ A+ L Sbjct: 140 FRYNIPKGLISANFAKDVIPKRRPRDRAYANRPWTIEERDTVLGKA---KPHVRVALALM 196 Query: 221 LVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYA 280 + TG D R++ + + ++ KTG ++AIP+S L A + + Sbjct: 197 MNTGLDPSDALRLRNDQVDGGTIWGVRGKTGEEVAIPVSPTLQAALNRMPN--------- 247 Query: 281 VSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLY 340 H + RG N + + + + + T R Sbjct: 248 ------HDAETVLSNSRGEAWTYNGFSTVWHRFKTALENEGLIEKGLTLKGLRHTVATTL 301 Query: 341 KEQGLDTQK---LLGHKTQQQTDRYHDD 365 +E GLD ++ LLG KT Y Sbjct: 302 REAGLDERRIADLLGQKTPSMARHYSRS 329 >UniRef50_D1CFY4 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFY4_THET1 Length = 363 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 35/318 (11%) Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LL 119 +++ R++LA +D+ +T + +L + I +R T V + Sbjct: 38 QRKRRELLAAADQGIMPARTRVTVAEFLSHWLEIIKP-----QVRPATLADYQNSVRNHI 92 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 G ++ ++ + +L + +A G + + + + K+A +G +P N Sbjct: 93 VPALGTIKLTKLEPAHLQELYSQLLAKGLSAKTVRNIHGTIHKAIKDAARWGMLP--RNV 150 Query: 179 ALATKQPRRKITRQRL---SLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 A + P+ ++RQ L + E+ + + T + LA+ TG R G++ +++ Sbjct: 151 ADIARPPK--VSRQELQCLTPEQVRLLMQACAGTRY--EPLLGLAIATGARQGELLGLRW 206 Query: 236 SDIWDDH------LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 +DI + ++ T S+ R + S +++ R R + L Sbjct: 207 ADIDLQRGVVQITRQLTRQGTFSEPKTSSGKRSVHVPVSTVELLRRHRSLQLQERLSAGD 266 Query: 290 RSTSQ-----AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG 344 R Q G + A L + + A + FH R S L QG Sbjct: 267 RWQDQGLVFANTLGGPMDARNLIRAWHRILQQAGLPRMP-----FHSLRHTSASLLLRQG 321 Query: 345 LDT---QKLLGHKTQQQT 359 + Q+ LGH T Sbjct: 322 VSPRLIQQRLGHADIAVT 339 >UniRef50_B0KSV1 Integrase family protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KSV1_PSEPG Length = 447 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 91/262 (34%), Gaps = 40/262 (15%) Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAV 131 IA S T +RY ++ K +R +T + + G + + Sbjct: 94 EIALSNWSQPTFGEIAERYFQYVVEKHK---LRESTLRDYQNRYKKWIEPSIGQLKLKTI 150 Query: 132 DVRDIAQLLDEYIAAGRP---------RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA- 181 D R +LL R A + R+VL VF A GEV NP L Sbjct: 151 DSRACIRLLHFIREQAGNDCSNKGNGNRTASISRTVLSRVFSHAVFLGEVEVTENPTLGI 210 Query: 182 ------TKQPRRKITRQRLSLEEWKKIFDIADATH------RYMGNAMLLALVTGQRLGD 229 KQ R+ L+++E + + D A+ +AL+TG R + Sbjct: 211 TDAMLDIKQQHNDKDRRFLTVDELCSAWQMLDHHRTEKYLLPVTTVAIQIALLTGMRRQE 270 Query: 230 ISRMKFSDIW---DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLV 286 + M++ ++ D K+ K I ++ L+ SL + + + + Sbjct: 271 VVGMEWRELEILPDGAAIYHVPKSRMKGGISHNVYLSGFAMSLINSLPKTSERIF----- 325 Query: 287 HFFRSTSQAERGAQVKANTLTM 308 A +G + + T+T Sbjct: 326 ------QSARKGEKYEHKTITK 341 >UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5TV13_DESVU Length = 395 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 52/318 (16%), Positives = 114/318 (35%), Gaps = 31/318 (9%) Query: 55 ANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAK 114 A R + R+ AI +R A + A T + + ++ + Sbjct: 78 AEMREMMREAREQAAIEERRAAN--AATTMNEF---WEKHYLPSSTLHKTPQTMKTESGY 132 Query: 115 PVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGR-PRMAQVVRSVLIDVFKEAQHYGEVP 173 +R G +S + I Q+ + AGR + + +++ ++ A+++ E+ Sbjct: 133 YAKWIRPVLGDSALSDLTPPLIEQVASNAMTAGRSAATIRHLLAIISQIWGMARNH-EIV 191 Query: 174 PGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISR 232 G P K+PR+ R R L+ E + + + ++ LL+L G R G+I Sbjct: 192 NGECPCTRIKKPRKDNRRMRFLTEAEASTLLVELEKRSKDTHDSALLSLFCGLRAGEIHS 251 Query: 233 MKFSDI--WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFR 290 + ++D+ +++ K ++ + ++ ++ R + + Y+ Sbjct: 252 LTWTDLNFTSGTIYIRDPKNKHSRHAYMTDEVRSM------LIERSKQLNATEYVFPAQN 305 Query: 291 STSQAERGAQVKANTLTMNFSKARDLARID---WGEGSPATFHEQRSLSERLYKEQG--- 344 + ++ F + D ++ FH R + G Sbjct: 306 GAKRNW---------VSDTFERVVDQLGLNDGITDSRQRVVFHTLRHTFASWLVQDGTPL 356 Query: 345 LDTQKLLGHKTQQQTDRY 362 +L+GH T + T RY Sbjct: 357 YTVAELMGHTTLEMTKRY 374 >UniRef50_A4Y8Q0 Phage integrase family protein n=2 Tax=Shewanella RepID=A4Y8Q0_SHEPC Length = 443 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 27/326 (8%) Query: 44 NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGD 103 + A+ +A N A++ +Q + + +I+ D ++A ++K+G+ Sbjct: 78 AKHIAVDLAEGVNPNEAKRLAKQEAERKEAL------SISVQQLFDSFEAEFMVKIKTGE 131 Query: 104 IRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDV 162 RLN+ K ++ R + ++ + LL I + ++L + Sbjct: 132 RRLNSLKDIQSTWKNHIQPRIAHLPVESITTVEAENLLKLIITKNSAAVRNKCLTLLKSM 191 Query: 163 FKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLAL 221 F E NP K+ + R+R L+ E + + + + + ++L L Sbjct: 192 FNE--------QQINPFGRIKK-LAAVKRERILNQHEVRALLESLEFEPPLYRDVVMLLL 242 Query: 222 VTGQRLGDISRMKFSDI-WDDHLHVI---QEKTGSKIAIPLSLRLNAINWSLRDVVARCR 277 +TGQR + M++ +I + +I + K+ A+PL+ + AI A Sbjct: 243 LTGQRKSCVFSMEWREIDHQRGMWIIPTSKIKSKKPHAVPLTKEVMAILERRSHEAAHGV 302 Query: 278 DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSE 337 Y A H T A +G+ +T + R + + T H+ R Sbjct: 303 KYVFPAERSHSGHITENAGKGSFWYR--ITER-AGLRSPEKSATAKEDNVTIHDLRRTIA 359 Query: 338 RLYKEQGLDTQ---KLLGHKTQQQTD 360 +G + Q KLLGH T Sbjct: 360 SWSVMRGGNIQTTSKLLGHSDISITA 385 >UniRef50_Q1GH05 Tyrosine recombinase xerD n=5 Tax=Rhodobacteraceae RepID=Q1GH05_SILST Length = 333 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 105/304 (34%), Gaps = 58/304 (19%) Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRD 135 K T + Y + R D + ++ + + L+RE+ G K + + RD Sbjct: 53 AKKKAKTTFEALIVSYYQTPEFR----DRKPRVQQEYRRTLELIREKNGPKDFTKLRRRD 108 Query: 136 IAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLS 195 + D Y A R A + ++ + + A + NPA K+ L+ Sbjct: 109 VIAARDAY--ADTWRKANAMVEMISILSRHAIDLEWIT--ANPASGVKK---------LT 155 Query: 196 LEEWKKIFDIADATHR---------YMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI 246 E++ D + A +L + TGQR+GD+ M+++ + V+ Sbjct: 156 GGEYEPWPDAKLQAFEAFCKKHDLEWELTAYMLGVGTGQRIGDVVGMEWAHYDGQFIAVV 215 Query: 247 QEKTGSKIAIP----LSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 QEKT +++ + L L+ + R ++A+ V+ Sbjct: 216 QEKTAARLWVACPTFLKRYLDGLPRRGRFIIAQSLHKGVAK------------------- 256 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQT 359 T+ R+ H R + E G + Q + GHKT + Sbjct: 257 -RTIQQRVMAVREKIG-----AVGYVIHGWRYTAAVHLAEAGASDSEIQAVTGHKTLEMV 310 Query: 360 DRYH 363 +Y Sbjct: 311 KKYR 314 >UniRef50_Q28ND0 Phage integrase n=2 Tax=Rhodobacteraceae RepID=Q28ND0_JANSC Length = 370 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 110/316 (34%), Gaps = 34/316 (10%) Query: 53 TEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQK 112 E + R +R +G + ++Y + + T + Sbjct: 53 AEYRVAMMGATPRAPAGPLER----RGSKGSFKWLCEQYYV----SAEYQRLSGRTKYVR 104 Query: 113 AKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEV 172 + + E+ G K + ++ R + ++ DE A RP A L V+ A Y Sbjct: 105 RGILDRICEKNGSKPYALMEPRHVRRMRDEM--ADRPEAANGFVKALRQVYAFAVEYELA 162 Query: 173 PPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDIS 231 NPA + K ++EE ++ D + A+ L L TGQR DI Sbjct: 163 Q--RNPARDVPYLKAKGDGFHSWTMEEVRQFEDHHPIGSKP-RLALALMLYTGQRRSDIV 219 Query: 232 RMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 R+ I D + + Q K + P++L + + L+ V+ ++ + F Sbjct: 220 RLGPQHIKDGWITMTQAKN--RDRKPVTLSIPVL-LELKAVLDATPTGNLAFLVTTF--- 273 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLL 351 G +N F K D+A + + H R L E G ++L+ Sbjct: 274 ------GKPFTSNGFGNWFRKQCDVAGLKHC-----SAHGLRKAGAALAAENGATERQLM 322 Query: 352 ---GHKTQQQTDRYHD 364 G T ++ RY Sbjct: 323 AIFGWSTMKEASRYTR 338 >UniRef50_B9JWL0 Phage-related integrase n=1 Tax=Agrobacterium vitis S4 RepID=B9JWL0_AGRVS Length = 346 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 104/274 (37%), Gaps = 26/274 (9%) Query: 91 YQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIA--AGR 148 Y R++ ++ +T + + G I AV+ + E+ A Sbjct: 63 YVISLYKRMELPRLKPSTRSTYLPYLKNIEIEFGDMDIRAVEATGSRAVFLEWRDTMATT 122 Query: 149 PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL--SLEEWKKIFDIA 206 PR A + S+L + H NP + TR+ + + + + +A Sbjct: 123 PRAADIAWSILQRIMAFGVH--MEKLKRNPCTNAGRLAESGTRREIIWTPPDLSRFRAVA 180 Query: 207 DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAIN 266 R + +A+LLA+ TGQR GD+ ++++S H+ + Q KTG ++AI +S L + Sbjct: 181 ---SRQLADALLLAIWTGQRQGDLLKLQWSAYDGKHIRLKQGKTGRRVAILVSGTLGKML 237 Query: 267 WSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSP 326 L+ S ++ R + G + + KA A I Sbjct: 238 DRLKA--ENEARKVQSLTILTNQRGRTWTSSGFKTS-------WGKAAKKAGIT-----G 283 Query: 327 ATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQ 357 TFH+ R + + G D K GH T+ Sbjct: 284 LTFHDLRGTFITMARRAGASIEDIAKASGHTTKD 317 >UniRef50_A1HTM7 Phage integrase family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTM7_9FIRM Length = 393 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 113/321 (35%), Gaps = 37/321 (11%) Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL- 118 A+Q+ + A + IT WL ++ + + +TY + + Sbjct: 48 AKQKRDALAAQYEAAYYVDADKITVGDWLAKWLDVY----ARPAVAPSTYDWYERICRVH 103 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGR-PRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 L G +S + + QLL+ + AG+ R Q V SVL + A+ +G + Sbjct: 104 LIPAIGHLRLSRLQQMAVQQLLNSLVDAGKSARTVQAVHSVLAMALRVARKHGLLRTL-- 161 Query: 178 PALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 P P+ + +R L+ +EW + A A+++ TG R G++ + + Sbjct: 162 PTDDVAVPQVRKQDKRPLTPDEWDALLTAAQTAPDIFA-ALVVEWATGLRRGELLGLMWD 220 Query: 237 D---------------IWDDHLHVIQEKT-GSKIAIPLSLRLNAINWSLRDVVARCRDYA 280 D I + KT +K +P+ + + + R +CR A Sbjct: 221 DIDFDRCLINVRRAVQIRRGGCVLADPKTEATKRVLPVPKEVMQVLRAHRARQMQCRLAA 280 Query: 281 VSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR-SLSERL 339 A+ G + F++ A +D G H R L+ R+ Sbjct: 281 GPAWQ--DCGLVFPTSGGTLYDPRNWSKRFARIAKAAGLDIGV------HHLRHDLTSRI 332 Query: 340 YKEQG--LDTQKLLGHKTQQQ 358 + Q LGH T + Sbjct: 333 VAAGAPVKEAQYRLGHATVKM 353 >UniRef50_A1VGL4 Phage integrase family protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VGL4_DESVV Length = 417 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 124/397 (31%), Gaps = 59/397 (14%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVN-----KVYW-RYKHPVTGK--FHALGTNEAEAIAIA 52 MA+ ++ P +Y ++++ +VY+ YK G+ +G ++ + A Sbjct: 33 MAS-SKRIKTQYPGVYYREAQRIGGTGTERVYYALYK--RDGRLIETKIGRQFSDDLTPA 89 Query: 53 TEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQK 112 A R R+ R A T T + Y K L Sbjct: 90 KAALIRAQLIEGRRSTRKELRQAEMDNAPWTILTLWEEY--------KRRKPNLKGIITD 141 Query: 113 AKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGR-PRMAQVVRSVLIDVFKEAQHYGE 171 + + + L +G+ P + V +L + + G Sbjct: 142 QNRFEVHLRHLQNMKPEEITTTLVDNLQLSLANSGKKPGTIKNVIELLRRIISFGEKKGL 201 Query: 172 VPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADA-THRYMGNAMLLALVTGQRLGDI 230 + P A + L+ E+ + ++ H+ G MLLAL TG R G+I Sbjct: 202 ITPSQICAHFEMPILNNQKTEDLTPEQLNNLIAAIESTKHKKAGQMMLLALYTGMRRGEI 261 Query: 231 SRMKFSDI-----------WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDY 279 +K+ I DD L K+G IPL+ L + Sbjct: 262 FNLKWEHIDWHRGFINIVGRDDGLG---AKSGQCERIPLN--------DLARQLLLSVPK 310 Query: 280 AVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERL 339 S Y+ + Q A+ L A + S FH R + L Sbjct: 311 GQSRYVFPGKSGGRLVDIRKQ--ADALKKE-------AGL---PDSFRPFHGLRHVYASL 358 Query: 340 YKEQGL----DTQKLLGHKTQQQTDRYHDDRGKGWSK 372 G + QKL+ HK+ T RY R K Sbjct: 359 LASTGKVSMYELQKLMTHKSAAMTQRYAHLRDDALKK 395 >UniRef50_D2SF19 LigA n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SF19_9ACTO Length = 397 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 71/352 (20%), Positives = 126/352 (35%), Gaps = 53/352 (15%) Query: 29 RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWL 88 RY+ P G +A L E L A ++G+ +T + W Sbjct: 20 RYRDPG-------GRQHERRFVRKVDAQRWLDE--ATSALVTQTWTAPARGR-VTVADWA 69 Query: 89 DRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQLLDEYIAAG 147 DR+ A ++ +T + + + G ++ V D+A + + + G Sbjct: 70 DRWLA------SQTGVKPSTLYRYGNLLRTHVLPTWGKHQLADVTHADVAVWVAKLLGQG 123 Query: 148 RP----RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKI 202 R A V S+L+ A G +P NPA PR + R L+ +E +++ Sbjct: 124 SAAGTVRQAHRVFSLLL---GLAVRDGRIP--RNPAERVPLPRVIRSEPRFLTHDEVERL 178 Query: 203 FDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQEKTGSKIAIPLSL 260 D A A G+ + L TG R G+++ ++ D L + + T + Sbjct: 179 ADAAGAE----GDVIRLLAYTGLRFGEMAALRVRRVDFLRRRLTIAEAVT------EVGG 228 Query: 261 RLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARID 320 RL + R + A L + ++G + T + + R+ R+ Sbjct: 229 RLEFGTPKTH----QQRTVPLPATLAEPLARRCEGKQGDDLLVTTASGTVLRLRNWRRVV 284 Query: 321 WGEGSPA------TFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQT-DRY 362 + A T H+ R + L G Q++LGH + T D Y Sbjct: 285 FDPAVRAAGLSDVTPHDLRHTAASLAVSSGATVKAVQRMLGHASAAMTLDVY 336 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C9Y1M6 Prophage lambda integrase n=26 Tax=root RepID=C9... 356 9e-97 UniRef50_P27077 Integrase n=36 Tax=root RepID=VINT_BPP21 355 2e-96 UniRef50_B2U001 Site-specific recombinase, phage integrase famil... 328 2e-88 UniRef50_B5XR66 Site-specific recombinase, phage integrase famil... 319 1e-85 UniRef50_C8Q8H3 Lambda integrase n=1 Tax=Pantoea sp. At-9b RepID... 315 2e-84 UniRef50_B5YWJ6 Phage integrase family protein n=25 Tax=Enteroba... 306 1e-81 UniRef50_P16407 Integrase n=20 Tax=root RepID=VINT_BPHK0 303 7e-81 UniRef50_P27078 Integrase n=23 Tax=root RepID=VINT_BP434 300 6e-80 UniRef50_A6WME5 Phage integrase family protein n=1 Tax=Shewanell... 293 7e-78 UniRef50_Q88MN9 Phage integrase, putative n=7 Tax=Pseudomonas Re... 285 1e-75 UniRef50_B2Q6E8 Putative uncharacterized protein n=2 Tax=Provide... 283 6e-75 UniRef50_Q31HX1 Phage integrase n=1 Tax=Thiomicrospira crunogena... 273 6e-72 UniRef50_B4SVC2 Phage integrase n=42 Tax=Enterobacteriaceae RepI... 269 2e-70 UniRef50_C4TU56 Phage integrase n=1 Tax=Yersinia kristensenii AT... 266 9e-70 UniRef50_Q2NUH1 Phage integrase n=2 Tax=Sodalis glossinidius str... 264 5e-69 UniRef50_D2TZP7 Phage integrase n=3 Tax=Arsenophonus nasoniae Re... 262 2e-68 UniRef50_Q2W5Y0 Integrase n=1 Tax=Magnetospirillum magneticum AM... 258 3e-67 UniRef50_C4I537 Bacteriophage lambda integrase, N-domain family ... 253 6e-66 UniRef50_A7FKY0 Integrase n=1 Tax=Yersinia pseudotuberculosis IP... 244 3e-63 UniRef50_B4ESJ2 Integrase n=2 Tax=Proteus mirabilis RepID=B4ESJ2... 241 3e-62 UniRef50_C5BBQ8 Integrase n=3 Tax=Edwardsiella RepID=C5BBQ8_EDWI9 240 4e-62 UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q... 238 3e-61 UniRef50_A1JLQ1 Phage integrase n=7 Tax=Yersinia RepID=A1JLQ1_YERE8 233 1e-59 UniRef50_D0L1C6 Lambda integrase n=1 Tax=Halothiobacillus neapol... 232 1e-59 UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuro... 230 7e-59 UniRef50_B4T7X0 Integrase n=14 Tax=Enterobacteriaceae RepID=B4T7... 229 1e-58 UniRef50_Q3A6E0 Site-specific recombinase/integrase n=3 Tax=Pelo... 229 2e-58 UniRef50_B7V4V5 Phage integrase, putative n=2 Tax=Pseudomonas Re... 225 2e-57 UniRef50_C5CJJ9 Integrase family protein n=1 Tax=Variovorax para... 219 1e-55 UniRef50_A1B6Q9 Phage integrase family protein n=1 Tax=Paracoccu... 217 5e-55 UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronos... 214 3e-54 UniRef50_A5W814 Phage integrase family protein n=4 Tax=Proteobac... 211 3e-53 UniRef50_C0DS64 Putative uncharacterized protein n=1 Tax=Eikenel... 210 5e-53 UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_... 210 6e-53 UniRef50_A3D8Y2 Phage integrase family protein n=4 Tax=Shewanell... 210 7e-53 UniRef50_D2YQV3 Phage integrase family protein n=2 Tax=Vibrio Re... 210 7e-53 UniRef50_A8MGP9 Integrase family protein n=1 Tax=Alkaliphilus or... 210 7e-53 UniRef50_A4TWM2 Phage integrase n=1 Tax=Magnetospirillum gryphis... 209 2e-52 UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR 208 3e-52 UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepI... 207 4e-52 UniRef50_C6USQ2 Integrase n=3 Tax=Escherichia coli O157:H7 RepID... 205 2e-51 UniRef50_C9CXZ5 Phage integrase n=1 Tax=Silicibacter sp. TrichCH... 205 3e-51 UniRef50_A3V904 Phage integrase n=5 Tax=Rhodobacteraceae RepID=A... 204 4e-51 UniRef50_UPI000169495E prophage LambdaBa04, site-specific recomb... 204 5e-51 UniRef50_B9MQ70 Integrase family protein n=1 Tax=Anaerocellum th... 204 6e-51 UniRef50_C2RY84 Prophage LambdaBa04, site-specific recombinase, ... 203 7e-51 UniRef50_C1SPM2 Site-specific recombinase XerD n=1 Tax=Denitrovi... 203 9e-51 UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=... 203 1e-50 UniRef50_D2U4J7 Phage integrase n=5 Tax=Gammaproteobacteria RepI... 203 1e-50 UniRef50_A7IMK8 Integrase family protein n=39 Tax=Bacteria RepID... 202 2e-50 UniRef50_C5SDM2 Integrase family protein n=1 Tax=Allochromatium ... 202 2e-50 UniRef50_D1S145 DNA integration/recombination/invertion protein ... 202 2e-50 UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirill... 201 3e-50 UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodo... 201 4e-50 UniRef50_A5L0D7 Site-specific recombinase, phage integrase famil... 201 4e-50 UniRef50_C8VWS4 Integrase family protein n=1 Tax=Desulfotomaculu... 200 5e-50 UniRef50_C3L682 Prophage LambdaBa04, site-specific recombinase, ... 200 7e-50 UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxida... 200 1e-49 UniRef50_B7DTD1 Integrase family protein n=2 Tax=Alicyclobacillu... 199 1e-49 UniRef50_B7RVJ7 Site-specific recombinase, phage integrase famil... 199 1e-49 UniRef50_C4SF49 Integrase n=1 Tax=Yersinia mollaretii ATCC 43969... 199 1e-49 UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5... 198 3e-49 UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicell... 198 3e-49 UniRef50_A5CFJ0 Phage-related integrase n=19 Tax=Orientia tsutsu... 198 4e-49 UniRef50_B4BIA4 Integrase family protein n=2 Tax=Geobacillus Rep... 197 6e-49 UniRef50_C3MAV8 DNA integration/recombination/invertion protein ... 197 8e-49 UniRef50_Q2NBN0 Site-specific recombinase, phage integrase famil... 197 8e-49 UniRef50_D2LJU9 Integrase family protein n=1 Tax=Rhodomicrobium ... 196 1e-48 UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculu... 195 2e-48 UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacte... 195 3e-48 UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M... 194 4e-48 UniRef50_B9MP49 Integrase family protein n=1 Tax=Anaerocellum th... 194 5e-48 UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 193 6e-48 UniRef50_C9RBE5 Integrase family protein n=1 Tax=Ammonifex degen... 193 6e-48 UniRef50_Q0F389 Site-specific recombinase, phage integrase famil... 193 6e-48 UniRef50_D2BJR0 Site-specific recombinase, phage integrase famil... 193 6e-48 UniRef50_B0KAT2 Phage integrase family protein n=7 Tax=Clostridi... 193 6e-48 UniRef50_B1B8Q2 Phage integrase n=1 Tax=Clostridium botulinum C ... 193 6e-48 UniRef50_C6BFQ2 Integrase family protein n=4 Tax=Betaproteobacte... 193 7e-48 UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales... 193 8e-48 UniRef50_Q88G06 Phage integrase, putative n=12 Tax=Gammaproteoba... 193 1e-47 UniRef50_UPI0000E0E5BD Tyrosine recombinase xerC n=2 Tax=Proteob... 192 2e-47 UniRef50_Q8XZ52 Putative integrase/recombinase protein n=1 Tax=R... 192 2e-47 UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfov... 192 2e-47 UniRef50_Q5X3B3 Putative uncharacterized protein n=2 Tax=Gammapr... 192 3e-47 UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogeni... 191 4e-47 UniRef50_C8WVH7 Integrase family protein n=1 Tax=Alicyclobacillu... 191 4e-47 UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospir... 190 5e-47 UniRef50_Q1AUQ4 Phage integrase n=3 Tax=Rubrobacter xylanophilus... 190 6e-47 UniRef50_C0DYX2 Putative uncharacterized protein n=2 Tax=Eikenel... 190 7e-47 UniRef50_Q5P749 Similar to phage-related integrase n=3 Tax=Bacte... 190 7e-47 UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio ... 190 8e-47 UniRef50_C4V5B3 Prophage LambdaCh01, site-specific recombinase p... 190 1e-46 UniRef50_D0CWC5 Phage integrase family protein n=1 Tax=Silicibac... 189 1e-46 UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JD... 189 1e-46 UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium ... 189 1e-46 UniRef50_A8MGA1 Integrase family protein n=7 Tax=Clostridiaceae ... 189 2e-46 UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio s... 189 2e-46 UniRef50_D2LSV7 Integrase family protein n=1 Tax=Bacillus cellul... 188 2e-46 UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=... 188 2e-46 UniRef50_B9BDB4 Putative integrase n=1 Tax=Burkholderia multivor... 188 2e-46 UniRef50_C0X0P7 Phage integrase family site specific recombinase... 188 2e-46 UniRef50_B9MR26 Integrase family protein n=2 Tax=Anaerocellum th... 188 2e-46 UniRef50_A3WDG1 Site-specific recombinase, phage integrase famil... 188 3e-46 UniRef50_A7JSJ8 Possible integrase/recombinase n=2 Tax=Mannheimi... 188 3e-46 UniRef50_Q2NTS7 Phage integrase n=25 Tax=Enterobacteriaceae RepI... 188 3e-46 UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsu... 188 3e-46 UniRef50_A4ILC8 DNA integration/recombination/invertion protein ... 188 3e-46 UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodoba... 187 4e-46 UniRef50_A5N1F6 Integrase-related protein n=3 Tax=Clostridia Rep... 187 4e-46 UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 R... 187 6e-46 UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio... 187 8e-46 UniRef50_Q4ZSI8 Phage integrase:Phage integrase, N-terminal SAM-... 186 1e-45 UniRef50_Q3Z840 Site-specific recombinase, phage integrase famil... 186 1e-45 UniRef50_B5YSQ6 Site-specific recombinase, phage integrase famil... 185 2e-45 UniRef50_B7GVF6 Tyrosine recombinase xerC n=1 Tax=Acinetobacter ... 185 2e-45 UniRef50_Q2W5Z6 Integrase n=1 Tax=Magnetospirillum magneticum AM... 185 2e-45 UniRef50_UPI0001BC6CC7 phage-related integrase n=1 Tax=Vibrio pa... 185 2e-45 UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia am... 185 2e-45 UniRef50_B7IY65 DNA integration/recombination/invertion protein ... 185 2e-45 UniRef50_A5KPC6 Putative uncharacterized protein n=3 Tax=Clostri... 185 2e-45 UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2... 185 3e-45 UniRef50_Q0AUP6 Phage integrase n=1 Tax=Syntrophomonas wolfei su... 185 3e-45 UniRef50_Q3SUE5 Phage integrase n=6 Tax=Alphaproteobacteria RepI... 185 3e-45 UniRef50_B9JF62 Tyrosine site-specific integrase/recombinase pro... 185 3e-45 UniRef50_Q7MKK6 Integrase n=6 Tax=Proteobacteria RepID=Q7MKK6_VIBVY 184 4e-45 UniRef50_A9ANN7 Integrase family protein n=30 Tax=Burkholderia R... 184 4e-45 UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium ML... 184 4e-45 UniRef50_Q129B4 Phage integrase n=1 Tax=Polaromonas sp. JS666 Re... 184 4e-45 UniRef50_B3CTI8 Putative integrase n=7 Tax=Orientia tsutsugamush... 184 5e-45 UniRef50_Q2NDK6 Site-specific recombinase, phage integrase famil... 184 5e-45 UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuro... 184 5e-45 UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter ve... 183 6e-45 UniRef50_C5WGZ4 Integrase n=18 Tax=root RepID=C5WGZ4_STRDG 183 7e-45 UniRef50_C1XYN2 Site-specific recombinase XerD n=1 Tax=Meiotherm... 183 9e-45 UniRef50_A5L0D6 Site-specific recombinase, phage integrase famil... 183 1e-44 UniRef50_A4Y8Q0 Phage integrase family protein n=2 Tax=Shewanell... 182 1e-44 UniRef50_B7V6G8 Integrase n=5 Tax=root RepID=B7V6G8_PSEA8 182 1e-44 UniRef50_Q1K3L0 Phage integrase n=1 Tax=Desulfuromonas acetoxida... 182 2e-44 UniRef50_A3QBL8 Phage integrase family protein n=1 Tax=Shewanell... 182 2e-44 UniRef50_C4XKJ5 Site-specific recombinase n=1 Tax=Desulfovibrio ... 182 2e-44 UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostri... 182 2e-44 UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1... 182 2e-44 UniRef50_A6T076 Phage-related integrase n=2 Tax=Burkholderiales ... 182 3e-44 UniRef50_D1CFY4 Integrase family protein n=1 Tax=Thermobaculum t... 181 3e-44 UniRef50_B9KYK7 Putative integrase n=1 Tax=Thermomicrobium roseu... 181 3e-44 UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5... 181 4e-44 UniRef50_Q2NBN1 Site-specific recombinase, phage integrase famil... 181 4e-44 UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacterac... 181 5e-44 UniRef50_B4V6V4 Phage integrase n=6 Tax=Streptomyces RepID=B4V6V... 181 5e-44 UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6... 180 5e-44 UniRef50_A8UUR8 Phage integrase family protein n=1 Tax=Hydrogeni... 180 6e-44 UniRef50_B1RM53 Phage integrase n=4 Tax=Clostridium RepID=B1RM53... 180 7e-44 UniRef50_Q0HXZ0 Phage integrase family protein n=6 Tax=Gammaprot... 180 7e-44 UniRef50_A4SIA1 Phage integrase family protein n=2 Tax=Gammaprot... 180 8e-44 UniRef50_A1K6M5 Site-specific recombinase, phage integrase famil... 180 9e-44 UniRef50_C3EB65 DNA integration/recombination/invertion protein ... 179 1e-43 UniRef50_A6D7H3 Putative uncharacterized protein n=1 Tax=Vibrio ... 179 1e-43 UniRef50_A3MZK6 Predicted phage integrase family protein n=5 Tax... 179 2e-43 UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium ... 178 2e-43 UniRef50_A6X006 Phage integrase family protein n=2 Tax=Alphaprot... 178 2e-43 UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophu... 178 2e-43 UniRef50_C0QB98 Putative uncharacterized protein n=1 Tax=Desulfo... 178 3e-43 UniRef50_C4KVM9 Site-specific recombinase, phage integrase famil... 178 3e-43 UniRef50_B6W9U7 Putative uncharacterized protein n=1 Tax=Anaeroc... 178 3e-43 UniRef50_A3DCS0 Phage integrase n=6 Tax=Bacteria RepID=A3DCS0_CLOTH 178 4e-43 UniRef50_D1PRY2 Site-specific recombinase, phage integrase famil... 177 4e-43 UniRef50_A4XMZ7 Phage integrase family protein n=3 Tax=Clostridi... 177 5e-43 UniRef50_A0LL76 Phage integrase family protein n=1 Tax=Syntropho... 177 5e-43 UniRef50_B9KV34 Phage integrase n=4 Tax=Rhodobacter RepID=B9KV34... 177 5e-43 UniRef50_Q3SHX2 Site-specific recombinase, phage integrase famil... 177 6e-43 UniRef50_Q2W123 Integrase n=1 Tax=Magnetospirillum magneticum AM... 177 6e-43 UniRef50_C6NU13 Site-specific recombinase, phage integrase famil... 177 6e-43 UniRef50_D1RC05 Putative uncharacterized protein n=1 Tax=Parachl... 177 7e-43 UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadec... 177 7e-43 UniRef50_C4FP65 Putative uncharacterized protein n=1 Tax=Veillon... 177 8e-43 UniRef50_A6G3J3 Site-specific recombinase, phage integrase famil... 177 8e-43 UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella Rep... 177 8e-43 UniRef50_C5SDU6 Integrase family protein n=1 Tax=Allochromatium ... 177 8e-43 UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfo... 176 9e-43 UniRef50_B8GSD9 Integrase family protein n=1 Tax=Thioalkalivibri... 176 1e-42 UniRef50_C0XLK8 Phage integrase family site specific recombinase... 176 1e-42 UniRef50_B8D1P6 Phage integrase family protein n=1 Tax=Halotherm... 176 1e-42 UniRef50_A3VAJ4 Site-specific recombinase, phage integrase famil... 176 1e-42 UniRef50_B8R670 Integrase n=4 Tax=root RepID=B8R670_9CAUD 176 1e-42 UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella si... 175 2e-42 UniRef50_A1HTM7 Phage integrase family protein n=1 Tax=Thermosin... 175 2e-42 UniRef50_A7HPZ7 Integrase family protein n=1 Tax=Parvibaculum la... 175 2e-42 UniRef50_B0KAZ5 Phage integrase family protein n=3 Tax=Thermoana... 175 3e-42 UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus t... 175 3e-42 UniRef50_A6Q5N8 Site-specific recombinase, phage integrase famil... 175 3e-42 UniRef50_C8KG88 DNA integration/recombination/invertion protein ... 175 3e-42 UniRef50_C5DAW2 Integrase family protein n=7 Tax=Bacillaceae Rep... 175 3e-42 UniRef50_B6G0S2 Putative uncharacterized protein n=1 Tax=Clostri... 175 3e-42 UniRef50_Q1NIG8 Phage integrase n=1 Tax=delta proteobacterium ML... 175 3e-42 UniRef50_Q5LLE0 Site-specific recombinase, phage integrase famil... 175 3e-42 UniRef50_C1IAU4 Phage integrase n=1 Tax=Clostridium sp. 7_2_43FA... 175 3e-42 UniRef50_B6QXT6 Phage integrase n=2 Tax=Pseudovibrio sp. JE062 R... 174 4e-42 UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio v... 174 5e-42 UniRef50_C1IBC3 Phage integrase n=1 Tax=Clostridium sp. 7_2_43FA... 174 5e-42 UniRef50_A6NRR1 Putative uncharacterized protein n=1 Tax=Bactero... 173 6e-42 UniRef50_C9RA80 Integrase family protein n=1 Tax=Ammonifex degen... 173 7e-42 UniRef50_Q1MA85 Putative shufflon-specific DNA recombinase n=3 T... 173 7e-42 UniRef50_Q04676 Rci protein n=10 Tax=Enterobacteriaceae RepID=Q0... 173 1e-41 UniRef50_Q24ZE5 Putative uncharacterized protein n=1 Tax=Desulfi... 173 1e-41 UniRef50_Q72B79 Site-specific recombinase, phage integrase famil... 173 1e-41 UniRef50_C7Y5Z8 Lj928 prophage integrase n=2 Tax=Lactobacillus c... 173 1e-41 UniRef50_C4KAG8 Integrase family protein n=1 Tax=Thauera sp. MZ1... 172 1e-41 UniRef50_A7ICY0 Integrase family protein n=14 Tax=Alphaproteobac... 172 1e-41 UniRef50_Q252J3 Putative uncharacterized protein n=1 Tax=Desulfi... 172 2e-41 UniRef50_A8ZS80 Integrase family protein n=1 Tax=Desulfococcus o... 172 2e-41 UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacteriu... 172 2e-41 UniRef50_C8R239 Integrase family protein n=1 Tax=Desulfurivibrio... 172 2e-41 UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacteriu... 172 2e-41 UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanell... 172 2e-41 UniRef50_C6QSP6 Integrase family protein n=1 Tax=Geobacillus sp.... 172 3e-41 UniRef50_A8L4Q7 Integrase family protein n=9 Tax=Actinomycetales... 171 3e-41 UniRef50_Q0K8W4 Phage integrase family protein n=1 Tax=Ralstonia... 171 3e-41 UniRef50_C1CZ59 Putative Tyrosine recombinase xerC-like protein ... 171 3e-41 UniRef50_A1VGL4 Phage integrase family protein n=1 Tax=Desulfovi... 171 3e-41 UniRef50_UPI0001C375E4 hypothetical protein RflaF_02473 n=2 Tax=... 171 4e-41 UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodoba... 171 4e-41 UniRef50_C5V3D2 Integrase family protein n=1 Tax=Gallionella fer... 171 5e-41 UniRef50_A6P1V8 Putative uncharacterized protein n=2 Tax=Bactero... 170 5e-41 UniRef50_A4XLL4 Phage integrase family protein n=1 Tax=Caldicell... 170 6e-41 UniRef50_A6QD27 Site-specific recombinase, phage integrase famil... 170 7e-41 UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacteriu... 170 7e-41 UniRef50_C0GUW3 Integrase family protein n=1 Tax=Desulfonatronos... 170 7e-41 UniRef50_A6SV87 Site-specific recombinase, phage integrase famil... 170 9e-41 UniRef50_C0GET2 Integrase family protein n=1 Tax=Dethiobacter al... 170 9e-41 UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Entero... 170 9e-41 UniRef50_D2SF19 LigA n=1 Tax=Geodermatophilus obscurus DSM 43160... 169 1e-40 UniRef50_C5SIT1 Integrase family protein n=1 Tax=Asticcacaulis e... 169 1e-40 UniRef50_Q30U09 Phage integrase n=1 Tax=Sulfurimonas denitrifica... 169 1e-40 UniRef50_Q9T1P3 Integrase n=4 Tax=root RepID=Q9T1P3_BPD3 169 1e-40 Sequences not found previously or not previously below threshold: UniRef50_B5K270 Integrase n=1 Tax=Octadecabacter antarcticus 238... 188 2e-46 UniRef50_C0N6F6 Site-specific recombinase, phage integrase famil... 181 5e-44 UniRef50_B2V4P6 Phage integrase family protein n=9 Tax=root RepI... 176 1e-42 UniRef50_B2TMD1 Prophage LambdaBa04, site-specific recombinase, ... 176 1e-42 UniRef50_B8I354 Integrase family protein n=1 Tax=Clostridium cel... 176 1e-42 UniRef50_Q3ABG2 Prophage LambdaCh01, site-specific recombinase, ... 176 1e-42 UniRef50_A7VZ12 Putative uncharacterized protein n=2 Tax=Clostri... 176 1e-42 UniRef50_A9VJZ8 Integrase family protein n=15 Tax=Bacillus cereu... 175 2e-42 UniRef50_C2NSI2 DNA integration/recombination/invertion protein ... 173 6e-42 UniRef50_Q0H247 DNA integration/recombination protein n=6 Tax=ro... 173 7e-42 UniRef50_C0EC03 Putative uncharacterized protein n=1 Tax=Clostri... 172 1e-41 UniRef50_B7DTQ3 Integrase family protein n=2 Tax=Bacillales RepI... 172 2e-41 UniRef50_UPI0001694281 DNA integration/recombination/invertion p... 171 5e-41 UniRef50_D1A578 Integrase family protein n=1 Tax=Thermomonospora... 169 1e-40 UniRef50_C2Z776 Prophage LambdaBa04, site-specific recombinase, ... 169 1e-40 >UniRef50_C9Y1M6 Prophage lambda integrase n=26 Tax=root RepID=C9Y1M6_CROTZ Length = 382 Score = 356 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 318/375 (84%), Positives = 356/375 (94%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPRKNNV VPNLYPLYSRKVNKVYWRYKHP+TGKFH+LGTNEAEAIAIATEAN+RLA Sbjct: 1 MAARPRKNNVKVPNLYPLYSRKVNKVYWRYKHPITGKFHSLGTNEAEAIAIATEANSRLA 60 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 EQ+TRQILA+SDRIATSKGKAITT TWL+RY IQ++RLKSGDIR NT+KQKAKPVSLLR Sbjct: 61 EQQTRQILALSDRIATSKGKAITTITWLERYWKIQEERLKSGDIRQNTFKQKAKPVSLLR 120 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 ER GMKLISAVDVRDIAQ+LD+YIAAG+PRMAQV+RSVLID+FKEAQH+GEVPPGYNPAL Sbjct: 121 ERVGMKLISAVDVRDIAQILDDYIAAGQPRMAQVIRSVLIDIFKEAQHFGEVPPGYNPAL 180 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 ATKQPRR+I RQRLSLEEW+KIFDIADATHRYMGNAMLLALVTGQRLGDIS MKF+DIWD Sbjct: 181 ATKQPRRRINRQRLSLEEWQKIFDIADATHRYMGNAMLLALVTGQRLGDISNMKFADIWD 240 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 DHLHV+QEKTGSK+AIPLSLRL+AI W+LRDV+ARCRDYAVS +L+HFFR+TS AERGAQ Sbjct: 241 DHLHVVQEKTGSKLAIPLSLRLDAIGWNLRDVIARCRDYAVSPFLIHFFRATSMAERGAQ 300 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTD 360 VK+NT+TMNFSKARD A I WG+G+PATFHEQRSL+ERLY +QG+DTQ+LLGHK+ QQT Sbjct: 301 VKSNTITMNFSKARDKAEIHWGDGTPATFHEQRSLAERLYGDQGVDTQRLLGHKSPQQTA 360 Query: 361 RYHDDRGKGWSKVAL 375 RYHD+RGK W+ +AL Sbjct: 361 RYHDNRGKDWNYIAL 375 >UniRef50_P27077 Integrase n=36 Tax=root RepID=VINT_BPP21 Length = 380 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 224/377 (59%), Positives = 289/377 (76%), Gaps = 2/377 (0%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPR + +S+PNLY ++ KVYW+YKHP++G+FH+LGT+E EA +ATEANT +A Sbjct: 1 MAARPRSHKISIPNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIA 60 Query: 61 EQRTRQILAISDRIATSKGK--AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 EQRTRQIL++++R+ KG+ IT + WLD+Y +IQ+DRL+ ++R N+Y+QK KP+ L Sbjct: 61 EQRTRQILSVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRL 120 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 RE GM+ + + DIA+++D A G RMAQVVR VLIDVFKEAQH G VPPG+NP Sbjct: 121 FREHCGMQHLKDITALDIAEIIDAVKAEGHNRMAQVVRMVLIDVFKEAQHAGHVPPGFNP 180 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 A ATKQPR ++ RQRLSL EW+ IF+ Y+ MLLALVTGQRLGDI +KFSDI Sbjct: 181 AQATKQPRNRVNRQRLSLLEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDI 240 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 WDD LH+ QEKTGSK+AIPL+L+ +A+N +LR+V+++CRD VS YLVH+ +TSQA RG Sbjct: 241 WDDMLHITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRG 300 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQ 358 QV ANTLT F KA++ I W +G+ TFHEQRSLSERLY+EQGLDTQKLLGHK+++ Sbjct: 301 DQVSANTLTTAFKKAKEKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKM 360 Query: 359 TDRYHDDRGKGWSKVAL 375 TDRY+DDRGK W V + Sbjct: 361 TDRYNDDRGKDWIIVDI 377 >UniRef50_B2U001 Site-specific recombinase, phage integrase family n=32 Tax=Enterobacteriaceae RepID=B2U001_SHIB3 Length = 376 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 186/375 (49%), Positives = 265/375 (70%), Gaps = 2/375 (0%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTRLAE 61 ARPRK VP L P + ++ NKVYWRY+HP+TGK H LG ++ A IA EAN+RLA Sbjct: 2 ARPRKYKTDVPGLSPYFDKRNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLAR 61 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 Q+ Q+L++ ++I + G + T + +L+ Y+ IQ +R ++G+I+LNT KQKA P+ + E Sbjct: 62 QQMEQMLSLQEKIISDTGGSSTVTIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDE 121 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 R G + + A+ V+D+ +L+EY A G RM Q+ R VLIDVF+EAQ G+VPPG+NPA + Sbjct: 122 RFGTRRLDAITVKDVVSVLEEYKARGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAES 181 Query: 182 TKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 K+P+ +I+RQRL+ +EW I++ A+ ++ MLLAL+TGQRL DI +M+FSDI D Sbjct: 182 AKKPQVRISRQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDG 241 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 +LHV Q+KTG++IAIPL+LR + +N +L DVV+ CRD +S +L+H + A+RG V Sbjct: 242 YLHVEQQKTGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTAKRGGMV 301 Query: 302 KANTLTMNFSKARDLARIDWG-EGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTD 360 K TLT+ F KARD +W G+P +FHEQRSLSERL++EQG+DT+ LLGH Q+ TD Sbjct: 302 KPATLTVAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGVDTKILLGHSNQKMTD 361 Query: 361 RYHDDRGKGWSKVAL 375 Y+D RGK W K+ + Sbjct: 362 IYNDARGKEWKKLVI 376 >UniRef50_B5XR66 Site-specific recombinase, phage integrase family n=1 Tax=Klebsiella pneumoniae 342 RepID=B5XR66_KLEP3 Length = 379 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 181/379 (47%), Positives = 251/379 (66%), Gaps = 4/379 (1%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPR + V++PNLY ++ +K YW+Y+HP+TG+F GT++ A ATE N LA Sbjct: 1 MAARPRDHKVNIPNLYCKLDKRNSKTYWQYRHPLTGQFIGFGTDQDAASQAATELNRLLA 60 Query: 61 EQRTRQILAISDRIATSK---GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 +Q T Q A+ D + K K+I W+DRY IQ +RL +I+LNT K + V Sbjct: 61 QQETAQSFALIDMVNHKKVNSKKSIRMRVWIDRYLKIQVERLSDNEIKLNTLKSRKTCVG 120 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 +L +R I V + +A + DEY A G+ RMAQ +RSV ID+F+EAQH GEV PGYN Sbjct: 121 VLAQRLPDVGIQEVTTKMLAAITDEYKAKGKARMAQTLRSVWIDLFREAQHAGEVEPGYN 180 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 PALAT++ ++ R RL+ E W+ IF+ A Y+ N+MLLA+VTGQR GD+++MKFSD Sbjct: 181 PALATRKVVARVNRSRLNFEMWQAIFEAASDMAPYVQNSMLLAIVTGQRRGDLAKMKFSD 240 Query: 238 IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 +WD +LHV Q KTG K+AIPLSLR ++ SL V+ RCRD VS +L+H S+ + + Sbjct: 241 VWDGYLHVKQLKTGVKLAIPLSLRSEVLDISLAQVIKRCRDRIVSPWLLHHVTSSGKVKA 300 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEG-SPATFHEQRSLSERLYKEQGLDTQKLLGHKTQ 356 G QV N+L+++F A D + G + TFHEQRSLSERLY+ QG++TQ+LLGH ++ Sbjct: 301 GDQVGENSLSVSFKLAVDSTNLSIERGKTMPTFHEQRSLSERLYEAQGINTQQLLGHSSE 360 Query: 357 QQTDRYHDDRGKGWSKVAL 375 + T +YH+DRG W KV + Sbjct: 361 KMTAQYHNDRGLDWVKVKV 379 >UniRef50_C8Q8H3 Lambda integrase n=1 Tax=Pantoea sp. At-9b RepID=C8Q8H3_9ENTR Length = 380 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 177/380 (46%), Positives = 257/380 (67%), Gaps = 5/380 (1%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPR++NV++PNLY ++ +KVYW+Y+HPVT +F GT+E A A EAN ++ Sbjct: 1 MAARPRRHNVTIPNLYCKLDKRTSKVYWQYRHPVTNQFIGFGTDEDAAKEAAIEANRIIS 60 Query: 61 EQRTRQILAISDRIATSKGKAIT---TSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 +Q+T+QI + D + K T +W++ Y+ I ++R++SG+I +T K K Sbjct: 61 QQQTKQITILVDMALKKEAKLTTGMRLFSWIEIYEKICNERIESGEIAKSTGKALVKSAK 120 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 +L +R + +D + +A ++DEY + G+ RMAQ +R+ ID+FKEAQH GEV GYN Sbjct: 121 ILEKRLPNVRLRNIDTKALASIIDEYKSEGKNRMAQFLRANWIDMFKEAQHSGEVDQGYN 180 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKFS 236 PALAT++ K+ R RLS +EW+KI++ A T N+MLLAL+TGQR DI++MKFS Sbjct: 181 PALATRKVHAKVKRARLSFDEWQKIYEAAKNTLAPAASNSMLLALITGQRRTDIAKMKFS 240 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 D+WDDHLH+ Q KTG+KIA+PLSLR NA+ SL + +A CRD +S Y++H R+ + Sbjct: 241 DVWDDHLHIEQSKTGAKIALPLSLRCNALGMSLGEAIAICRDRVLSPYMIHHVRNNRGKK 300 Query: 297 RGAQVKANTLTMNFSKARDLARI-DWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKT 355 G + ++L+ FS+AR A + + +P +FHEQRSLSERLY+ QG++TQ LLGHK+ Sbjct: 301 PGDPIWEDSLSRYFSEARISAGVNPDKDQTPPSFHEQRSLSERLYRAQGINTQLLLGHKS 360 Query: 356 QQQTDRYHDDRGKGWSKVAL 375 TD+Y+DDRG W K+AL Sbjct: 361 IAMTDKYNDDRGADWKKLAL 380 >UniRef50_B5YWJ6 Phage integrase family protein n=25 Tax=Enterobacteriaceae RepID=B5YWJ6_ECO5E Length = 372 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 173/377 (45%), Positives = 252/377 (66%), Gaps = 7/377 (1%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M+ RPRKN+ V LY + R+ +VY++YK+PVTGKFH LGT++ +A IA+ AN R+A Sbjct: 1 MSPRPRKNSTDVAGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTDKGKAEKIASTANQRIA 60 Query: 61 EQRTRQIL-AISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + I + + +K + I W+DRY IQD RLK+GDI T+K+K + + L Sbjct: 61 AAEAEYFMRKIDESPSATKRRGIRLKAWVDRYLKIQDTRLKNGDIAATTHKEKTRMAAYL 120 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 R G + ++VRD A +LDE++ A+V R + +D++KEAQH GEVPPG+NP Sbjct: 121 VSRLGNHPLKELEVRDFALILDEWLDKDMVSTARVNRGLWVDIYKEAQHAGEVPPGWNPP 180 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 AT++P K+TR RL++E+W+KI++ A ++ NAMLLA+VTGQR DI M+FSD+W Sbjct: 181 EATRKPIPKVTRARLTMEDWQKIYN-ATPEKHFIRNAMLLAIVTGQRRDDICHMRFSDVW 239 Query: 240 DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 ++HLH+ Q KTG ++A+PL+LR +AI +L++V+ CRD +S YL+H + ++ Sbjct: 240 NEHLHITQGKTGMRLALPLTLRCDAIGITLKEVIDGCRDRILSPYLIH----SRHQKQPK 295 Query: 300 QVKANTLTMNFSKARDLAR-IDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQ 358 + + L+ F+KARDLA I +P TFHEQRSLSERLY+ QG+DT+ LLGHK Q Sbjct: 296 PMSKDNLSDYFAKARDLAGVIPPAGKTPPTFHEQRSLSERLYRAQGIDTKTLLGHKVQAT 355 Query: 359 TDRYHDDRGKGWSKVAL 375 TDRY+D RG+ W K+ + Sbjct: 356 TDRYNDTRGQEWVKLVI 372 >UniRef50_P16407 Integrase n=20 Tax=root RepID=VINT_BPHK0 Length = 357 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 138/376 (36%), Positives = 213/376 (56%), Gaps = 25/376 (6%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAE 61 R + PNLY N Y+ Y+ P TGK LG + AI A +AN L Sbjct: 3 RRRSHERRDLPPNLYIR-----NNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLS 57 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 R+ ++ DRI + AIT WLDRY+ I +R IR T A + +R Sbjct: 58 GNRRE--SLIDRIKGAD--AITLHAWLDRYETILSER----GIRPKTLLDYASKIRAIRR 109 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 + K ++ + +++A +L+ Y+A G+ A+++RS L+DVF+EA G V NP A Sbjct: 110 KLPDKPLADISTKEVAAMLNTYVAEGKSASAKLIRSTLVDVFREAIAEGHV--ATNPVTA 167 Query: 182 TKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 T+ + ++ R RL+ E+ I+ A+ ++ AM LA+VTGQR+GD+ RMK+SDI D+ Sbjct: 168 TRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDN 227 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 HLH+ Q KTG+K+AIPL+L ++A+N SL D + +CR+ + S ++ ++ + Sbjct: 228 HLHIEQSKTGAKLAIPLTLTIDALNISLADTLQQCREASSSETII-------ASKHHDPL 280 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQT 359 T++ F+KAR+ + + + +G+P TFHE RSLS RLY+ Q D Q+LLGHK+ Sbjct: 281 SPKTVSKYFTKARNASGLSF-DGNPPTFHELRSLSARLYRNQIGDKFAQRLLGHKSDSMA 339 Query: 360 DRYHDDRGKGWSKVAL 375 RY D RG+ W K+ + Sbjct: 340 ARYRDSRGREWDKIEI 355 >UniRef50_P27078 Integrase n=23 Tax=root RepID=VINT_BP434 Length = 356 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 125/376 (33%), Positives = 198/376 (52%), Gaps = 25/376 (6%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAE 61 R + PNLY N Y+ Y+ P TGK LG + AI A +AN L Sbjct: 3 RRRSHERRDLPPNLYIR-----NNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFS 57 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 + L + ++T +WLDRY+ I L S I+ T + +R Sbjct: 58 GHKHKPLTA----RINSDNSVTLHSWLDRYEKI----LASRGIKQKTLINYMSKIKAIRR 109 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 + + ++IA +L YI G+ A+++RS L D F+EA G + NP A Sbjct: 110 GLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITT--NPVAA 167 Query: 182 TKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 T+ + ++ R RL+ +E+ KI+ A+++ ++ AM LA+VTGQR+GD+ MK+SDI D Sbjct: 168 TRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDG 227 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 +L+V Q KTG KIAIP +L ++A+ S+++ + +C++ ++ + R + Sbjct: 228 YLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETII-------ASTRREPL 280 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQQQT 359 + T++ F +AR + + + EG P TFHE RSLS RLY++Q D Q LLGHK+ Sbjct: 281 SSGTVSRYFMRARKASGLSF-EGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMA 339 Query: 360 DRYHDDRGKGWSKVAL 375 +Y DDRG+ W K+ + Sbjct: 340 SQYRDDRGREWDKIEI 355 >UniRef50_A6WME5 Phage integrase family protein n=1 Tax=Shewanella baltica OS185 RepID=A6WME5_SHEB8 Length = 394 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 154/399 (38%), Positives = 216/399 (54%), Gaps = 29/399 (7%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MAARPRK ++ V NLY + +VY++Y+ P G F LG + A A+ N +A Sbjct: 1 MAARPRKFDLGVENLYCRQDARNGEVYYQYRDPRNGAFRGLGKDRTIAKERASALNLLIA 60 Query: 61 EQRTRQILAI-SDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 +Q + + R I W+++Y AIQ DRL +G+IRLNT+K + ++ Sbjct: 61 QQLASAFIDNYNARPERVAQHGIAFKKWVEKYIAIQGDRLNNGEIRLNTFKTRKSQATIA 120 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + G + + +D +L+ A G+ R AQ VRSVLID+FKEA GE+ G+NPA Sbjct: 121 IKAMGNIPLKDISTKDCYELMQSLRAQGKERTAQAVRSVLIDIFKEAAQAGEITGGFNPA 180 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF---- 235 ATK PR + R RL LE K+I +A+ ++ N +LLALVTGQR DI+ M+F Sbjct: 181 SATKSPRVNVVRDRLELEAVKQILAVAETKEPWVKNTILLALVTGQRRVDIANMQFKKGN 240 Query: 236 -------------------SDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 S + + LHV Q+KT + + +PL L+L A++ S+ +VV C Sbjct: 241 DWEKLYQNWKTGNRSKPPYSYVEGEWLHVFQQKTSTMLKLPLGLKLEALDLSIGNVVLSC 300 Query: 277 RDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLS 336 R VS YL+H A G QV +T+T FS+ RD TFHE RSLS Sbjct: 301 RSRCVSKYLIHHQHGIRGATIGGQVFVDTITKRFSECRDELGPSTT-----TFHELRSLS 355 Query: 337 ERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 ERLY QG+DTQ LLGHK + T YHD RG+ W ++ + Sbjct: 356 ERLYSGQGIDTQILLGHKDPRTTAAYHDIRGQMWIELVI 394 >UniRef50_Q88MN9 Phage integrase, putative n=7 Tax=Pseudomonas RepID=Q88MN9_PSEPK Length = 368 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 143/379 (37%), Positives = 209/379 (55%), Gaps = 16/379 (4%) Query: 1 MAARPRKN--NVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTR 58 MA RPR PNLY ++ Y+ Y+ PV+ + LG+++A+AIA A AN Sbjct: 1 MAPRPRNPGSKDLPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMA 60 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 L I+ + K S W+ Y A LK ++ ++ + ++ Sbjct: 61 LQVAPPTLSARIAPEPSAPDRK---FSEWIVEYFAD----LKDRELSESSMRNLRMRLNR 113 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + + G + I + DIA L Y+ G+ +MA+ +RS+L D+F A G V YNP Sbjct: 114 VEKAFGERGIRTLTTMDIADYLSTYVKEGKAQMARAMRSLLRDLFMGAMARGWV--DYNP 171 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 ATK R KI RQRL+LE WK I++ +A ++ AM LAL+TGQR DI+ F D Sbjct: 172 VEATKAARVKIKRQRLTLELWKAIYE--EAAQPWLKRAMELALITGQRREDIASFVFRDE 229 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 D L V+Q KTG+++ I S+ L I+ SL +V+ RCRD +S +LVH R+ S+A+ G Sbjct: 230 VDGFLQVVQSKTGARLRISTSVTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKAG 289 Query: 299 AQVKANTLTMNFSKARDLARIDWGEG---SPATFHEQRSLSERLYKEQGLDTQKLLGHKT 355 + + +T++ F+ ARD A + G SP TFHEQRSL+ RL+ E+G D Q+LLGH++ Sbjct: 290 SPIMLDTISKEFAAARDRAAVKLGLDLGASPPTFHEQRSLAARLHDEEGRDAQRLLGHRS 349 Query: 356 QQQTDRYHDDRGKGWSKVA 374 + TD Y D RG W VA Sbjct: 350 AKMTDLYRDSRGAEWIDVA 368 >UniRef50_B2Q6E8 Putative uncharacterized protein n=2 Tax=Providencia RepID=B2Q6E8_PROST Length = 354 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 126/379 (33%), Positives = 203/379 (53%), Gaps = 29/379 (7%) Query: 1 MAA-RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 MA R KN PNLY K Y+ Y++P TG + +G N+AEA+ A AN + Sbjct: 1 MARNRSPKNAHLPPNLYCR------KGYYSYRNPETGIEYGIGRNKAEAVNEAISANLFI 54 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 ++ ++ +R+A++ AI W+DR+ I R D++ T + + Sbjct: 55 YGKKE----SLINRMASND--AIKFHDWIDRFGEIILLR----DLKKKTLDDYQGRLKRI 104 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + +S + +DIA ++ ++ G A+++RS+L D+F EA G V +NP Sbjct: 105 KNSFNNVPLSEIKTKDIADYINNIVSDGNITTARLMRSILKDMFNEAMSDGVV--DFNPV 162 Query: 180 LATKQPRRKITRQRLSLEEWKKIFD-IADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 +AT+ PR KI R R+S ++ +I++ + ++ +M LA++TGQR GDI ++K+ D+ Sbjct: 163 IATRVPRNKIARTRMSESDYIQIYNTAVEHCQPWVSMSMDLAILTGQRSGDIRKLKWDDV 222 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 D L + QEKTG+KIAIPL++ N N +L+ V+ RC+ V +++G Sbjct: 223 HDGFLWIEQEKTGTKIAIPLTISNNIANKTLQSVLDRCKHELNGKEFVLV------SQKG 276 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--TQKLLGHKTQ 356 + T+ FS AR + + W EGSP TFHE RSL+ R+Y + + +LLGHK+ Sbjct: 277 DMLADKTIGKAFSLARSKSGLSW-EGSPPTFHEIRSLASRVYGNEKSNEFANQLLGHKSM 335 Query: 357 QQTDRYHDDRGKGWSKVAL 375 T Y DDRG W K+ + Sbjct: 336 DMTRMYQDDRGLSWKKIEI 354 >UniRef50_Q31HX1 Phage integrase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HX1_THICR Length = 372 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 120/382 (31%), Positives = 197/382 (51%), Gaps = 23/382 (6%) Query: 1 MAARPRKNN-VSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 M+ + R+ + PNLY ++ KVY++YK P+ GKF++ GT++ +A+ A N + Sbjct: 1 MSPKAREISLGLPPNLYAKKDKRNGKVYYQYKSPLDGKFYSFGTDKNQAVNDAVALNHNI 60 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + + + K I + Y + ++ NT K + Sbjct: 61 YDAIQKSRVEKL-----KKPACILFRDFWQIYFD----SMNDRKLKPNTIKTRKSQYEAC 111 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 G ++ V V+D+A +++ YI + R A +RS L D FKEA H G V NPA Sbjct: 112 YPFIGNTPLNEVRVKDVADIINHYIEQDKRRTASAIRSTLKDAFKEAIHQGIVED--NPA 169 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 T+ P + RQR +L++ K+ +I ++ NA+LLAL+TGQR+ DI++MKF D Sbjct: 170 EKTRAPSVPVKRQRFNLDQVLKVLEI--NKETWLENAILLALITGQRVSDIAKMKFKDFD 227 Query: 240 DDHLHVIQEKTG-----SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 ++L+VIQ+K + ++L+A++ +L D++ +CRD +S +LVH ++ Sbjct: 228 GEYLYVIQKKNRQGAPEKRYKYHKDIKLDALSMTLGDIINKCRDNVISKHLVHHTKNEGL 287 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG-LDTQKLLGH 353 A++G T++ F+ + TFHE RSLS RLYK QG + QK+LGH Sbjct: 288 AKKGTSCHEQTISKRFTWLVREV---VDGQNLPTFHELRSLSARLYKAQGNISEQKVLGH 344 Query: 354 KTQQQTDRYHDDRGKGWSKVAL 375 K+ + T+ Y D RG W V + Sbjct: 345 KSAKSTEIYTDARGSEWVAVEM 366 >UniRef50_B4SVC2 Phage integrase n=42 Tax=Enterobacteriaceae RepID=B4SVC2_SALNS Length = 359 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 133/367 (36%), Positives = 201/367 (54%), Gaps = 19/367 (5%) Query: 5 PRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTRLAEQR 63 +K + ++P Y Y + +W ++PVT K LG +AI A EAN +A+ Sbjct: 3 RKKYDANLPR-YLTYRKASKSFFW--RNPVTDKEFPLGQIARRDAITQAIEANNFIAQNH 59 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 T +A+ +++ + + T S W+DRY+ + R + +NTYK ++ ++ +RE+ Sbjct: 60 T--PVALIEKLKGTD--SFTVSAWIDRYEVLLQRR----SLSVNTYKIRSNQLATVREKM 111 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 G +++ V R IA+ L+ +I G+ MA +RSVL D+F+EA G + NP AT+ Sbjct: 112 GEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVK--NPVEATR 169 Query: 184 QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 P K+ R+RL LE + A+ + AM LALVTGQR DI MKFSD++D+ L Sbjct: 170 IPEIKVARERLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRL 229 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 +V Q KTG KIAIPLSL L A L V+ RCR + + +++ + + Sbjct: 230 YVTQIKTGMKIAIPLSLTLEAPGLRLGTVIDRCRLVSRTDFMI--SAGIRKNSPTGNIHP 287 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYK-EQG-LDTQKLLGHKTQQQTDR 361 + LT F KAR + +++ +P TFHE RSL+ RLYK E G + QKLLGH + T Sbjct: 288 DGLTKTFVKARKASGVNFS-NNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSANTTKL 346 Query: 362 YHDDRGK 368 Y D+R Sbjct: 347 YLDERDD 353 >UniRef50_C4TU56 Phage integrase n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TU56_YERKR Length = 360 Score = 266 bits (681), Expect = 9e-70, Method: Composition-based stats. Identities = 132/377 (35%), Positives = 210/377 (55%), Gaps = 21/377 (5%) Query: 1 MAARPRKNNVSVP-NLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTR 58 M RP K + ++P NL SRK + +++P+ GK ALG + +AIA A EAN Sbjct: 1 MKKRPAKYDANLPRNLTYRKSRKS----FYWRNPLNGKEIALGQISRRDAIAQAIEANHY 56 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 + + I+ T WL+RY+ I R + NTYK +A ++ Sbjct: 57 IE----KNYSPIALLEQLKGVHEYTMDNWLERYEIILQRR----KLAANTYKVRAGHINT 108 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 +R++ K++S + DIA+ L+ ++ G+ MA +RSVL DVF+EA G + NP Sbjct: 109 IRDKFADKVLSKITTLDIAEFLESWVEQGKAAMAGTLRSVLSDVFREAIVAGRIE--VNP 166 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 T+ P+ + R+RL E++ I + A+ + +M LALVTGQR D+ +MKF D+ Sbjct: 167 VTPTRAPKITVMRERLEYEQYIAIRNAAEQQPAWFALSMDLALVTGQRREDVVKMKFIDV 226 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 D+ L++ Q KTG+ IAIPL+L L ++ SL +++ RCR + + +L+ + Sbjct: 227 RDNRLYIEQTKTGAMIAIPLTLTLKSVGLSLSNIIDRCRQVSRTDFLI--SSGIRKNSPD 284 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ-GLD-TQKLLGHKTQ 356 + + LT F KAR + + + SP +FHE RSLS RLY+++ G + T+KLLGHK++ Sbjct: 285 GSIHPDGLTKGFVKARRYSGLSFSH-SPPSFHEIRSLSGRLYEKEYGKEFTRKLLGHKSE 343 Query: 357 QQTDRYHDDRGKGWSKV 373 + TD+Y D RGK + + Sbjct: 344 KMTDKYLDTRGKEYVML 360 >UniRef50_Q2NUH1 Phage integrase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NUH1_SODGM Length = 355 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 137/377 (36%), Positives = 202/377 (53%), Gaps = 25/377 (6%) Query: 1 MAARP-RKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 MA R KN PNL P+ N Y+ Y+ P TGK + LG N EAI A AN + Sbjct: 1 MARRRSHKNRDLPPNLQPI-----NGGYFCYRDPRTGKEYGLGRNRREAITQAIAANMAI 55 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + L DRI+ + +A T S W RY I + R ++ T + K + + Sbjct: 56 YGSSKQSPLV--DRISGT--QATTVSEWTTRYLTILEGR----KLKPKTMTEHRKYLKAI 107 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 E G I V +D+A L+ ++ AG+ MA +R +ID+F+EA G V +NPA Sbjct: 108 NEHLGEFAIQQVQTKDVAAFLNLWVKAGKETMANKLRKEVIDLFREAIADGIV--SHNPA 165 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 AT+ R +I R+R++LEEWK I IA+ ++G+ + LALVTGQRLGDI + + + Sbjct: 166 EATRNQRVEIQRERITLEEWKVIRKIAEKLPAWVGSCLDLALVTGQRLGDIQALLWENFK 225 Query: 240 DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 D L++ Q KTG +A R++ +N L DV+++ + L + Sbjct: 226 DGRLYIKQAKTGMMLAFSAVTRIDCLNLCLADVLSQFKA------LNSTGSHIVADSKHE 279 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLY-KEQGLD-TQKLLGHKTQQ 357 Q A T++ F KAR ++ + W +G P +FHE RSL+ RLY E+G D QKLLGHK+ + Sbjct: 280 QFAAKTISAAFLKARRVSGLTW-QGDPPSFHEIRSLAARLYTDEKGRDYAQKLLGHKSSE 338 Query: 358 QTDRYHDDRGKGWSKVA 374 TD+Y D RG W+++ Sbjct: 339 MTDKYRDVRGSEWAEIE 355 >UniRef50_D2TZP7 Phage integrase n=3 Tax=Arsenophonus nasoniae RepID=D2TZP7_9ENTR Length = 336 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 196/364 (53%), Gaps = 31/364 (8%) Query: 12 VPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAIS 71 PNLY Y+ Y+ P T K + LG N+A AI A AN L T ++ ++ Sbjct: 2 PPNLYKR------NGYYSYRDPRTRKEYGLGRNKAYAINEAISANQLLLN--TEKVKPLT 53 Query: 72 DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAV 131 +RI ++ +LDRY+ I LK+ +R T K + + ++R+ I + Sbjct: 54 ERIDG--QGSVYFHEFLDRYEEI----LKTRGLREKTLKDYKQRIGVIRKGFVNAPIQNI 107 Query: 132 DVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 ++IA L I R A+++RS+L D F+EA G + NP +TK P+ KI R Sbjct: 108 TTKEIADFLQLSINEERITTAKLMRSLLNDCFREAISLGLIQ--INPVTSTKTPKIKIQR 165 Query: 192 QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTG 251 RLSLE++ I + + H ++ +AM LALVTGQR+ D+S++K+ DI D L +IQ+KTG Sbjct: 166 ARLSLEDFNTILGLINNGHHWLTHAMKLALVTGQRVSDVSKIKYKDIHDGKLWIIQQKTG 225 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 SKIAIPL + L L +A C S ++++ G ++ ++ F Sbjct: 226 SKIAIPLDIEL--YGIKLSKTIADC--VNNSEFVINN--------NGNKITVERISKEFR 273 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKE-QGLD-TQKLLGHKTQQQTDRYHDDRGKG 369 + RD+++++W G P +FHE RSLS RLY E G + QKLLGHK+ T +Y DDR Sbjct: 274 RFRDISQLNWV-GEPPSFHEIRSLSARLYTETMGSNFAQKLLGHKSATMTAKYQDDRNNS 332 Query: 370 WSKV 373 W ++ Sbjct: 333 WIEI 336 >UniRef50_Q2W5Y0 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y0_MAGSA Length = 370 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 123/379 (32%), Positives = 188/379 (49%), Gaps = 17/379 (4%) Query: 1 MAARPR--KNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTR 58 M + R NL Y+ + +P G+ + LG ++ A A A EAN + Sbjct: 1 MPGKRRNMSRRDWPANLRCR-----RDGYYSWVNPTDGREYGLGRDKRAAFAQAVEANLQ 55 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 + + L + T + Y+ D RL+ I T + ++ Sbjct: 56 IMALCDKPRLVD----RLNGTTDTTFADLAALYRQEIDKRLERAKIVKATAMSMRQRLAT 111 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + R G ++ + +D A +L EY AG+ RMAQ +RS ++DVF A G NP Sbjct: 112 IETRWGATKVAQITTKDAADMLREYEDAGKERMAQSMRSFMLDVFNHAVAIGWRET--NP 169 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFD-IADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 TK ++ R RL+LE+++ I A + AM LAL+TGQR D+ M D Sbjct: 170 VAVTKAVTVEVERSRLTLEDFRAIHAYAAANMAPRVARAMELALITGQRRDDLRNMGPKD 229 Query: 238 IWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 I D +L V+Q K G++++IP+ +RL +NWSL +VVA CRD +S + +H +A Sbjct: 230 ISDGYLWVVQSKGGARVSIPVGIRLQVVNWSLSEVVANCRDAVLSKHFLHHNAIVGKARP 289 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEG-SPATFHEQRSLSERL-YKEQG-LDTQKLLGHK 354 G ++A T+++ F++ARD A I G +P TFHE RSL+ RL E+G + LLGHK Sbjct: 290 GDPIRAQTISLEFAEARDKAGITGSTGKTPPTFHEIRSLAARLWTDERGEAFAKALLGHK 349 Query: 355 TQQQTDRYHDDRGKGWSKV 373 + + Y D RG W +V Sbjct: 350 SAEMAALYRDKRGDDWVRV 368 >UniRef50_C4I537 Bacteriophage lambda integrase, N-domain family n=2 Tax=pseudomallei group RepID=C4I537_BURPS Length = 375 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 117/372 (31%), Positives = 186/372 (50%), Gaps = 22/372 (5%) Query: 12 VPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAIS 71 NLY + + Y+ YK+ TGK + LG + A A A AN L + L Sbjct: 14 PANLY-----QNSAGYFWYKNTATGKSYGLGRDFKVASAQARTANAELLHRAGDVSL--- 65 Query: 72 DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER-AGMKLISA 130 I G +T W D+Y + K+G NT K + ++ + + Sbjct: 66 --INRIDGGKLTLDQWCDKYLQKFEASGKAG----NTIKSVQSQIRAIKAAPFSTQSLMR 119 Query: 131 VDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT 190 V ++I ++ + + +RS L DVF+ A+ G + G NPA+ K P ++ Sbjct: 120 VSTKEINDYIEGITESRGATITAKIRSRLQDVFRSAEAAGHIELGKNPAIPVKAPPVDVS 179 Query: 191 RQRLSLEEWKKIFDIA--DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQE 248 R RL+L+++ I D+T + NA LAL+TGQRL DI+ M F + D L V Sbjct: 180 RDRLTLDDFNAIVARTREDSTRCWAANAFELALLTGQRLSDIAAMTFDQVKDGFLWVEPI 239 Query: 249 KT--GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTL 306 K+ K+ IP+ + L+++ ++ V+ RCRD VS ++VHF + G +V +T+ Sbjct: 240 KSQGKVKLKIPVHVGLSSVKLTIEAVIKRCRDSVVSKHMVHFIHQRGSVKPGQKVYHDTI 299 Query: 307 TMNFSKARDLARIDWGEG-SPATFHEQRSLSERLYKEQ--GLDTQKLLGHKTQQQTDRYH 363 + F++ RD+A I EG +P +FHE RSL+ RLY ++ Q L+GH + Q T Y Sbjct: 300 SKTFAEMRDVAGITGREGRNPPSFHEIRSLAIRLYSDEYGPAFAQALVGHTSAQMTALYR 359 Query: 364 DDRGKGWSKVAL 375 D+RG+ W++V L Sbjct: 360 DNRGREWTEVKL 371 >UniRef50_A7FKY0 Integrase n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FKY0_YERP3 Length = 312 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 180/316 (56%), Gaps = 16/316 (5%) Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 + I+A+ +RI + +T S W+ Y + R ++ T + ++ E Sbjct: 11 RTGTGIVALYNRINSV--AVVTVSDWVKTYTEVLSKR----GLKSKTITGYNSRLDVVDE 64 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 + I ++ +DIA LL++Y G+ A+++RS L D F+EA G + NP A Sbjct: 65 VFASRTIDSISTKDIATLLNDYTNNGKAASAKLMRSFLTDFFREAVSEGIIYN--NPVDA 122 Query: 182 TKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 TK P+ ++ R RLSL+ + I A ++ ++M LA+VTGQR+GD+ +MK+SDI DD Sbjct: 123 TKNPKIEVKRARLSLDNFLSIRAAAADMPGWVVDSMDLAIVTGQRVGDVRKMKWSDIKDD 182 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 L V QEKTG +I IP ++L+ + SLRD++ARC + A+ + +++G Sbjct: 183 KLFVEQEKTGMRIIIPFDVKLDTLLLSLRDIIARCENRAIKGETI------ISSDKGESF 236 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYK-EQGLD-TQKLLGHKTQQQT 359 TLT F+KARDLA I W +P FHE RSL+ RLY+ E G + +QK+LGHK+ Q T Sbjct: 237 ADKTLTKRFAKARDLANITWEGINPPPFHEIRSLASRLYEKEMGKEFSQKILGHKSAQTT 296 Query: 360 DRYHDDRGKGWSKVAL 375 D+Y D RG W ++ + Sbjct: 297 DKYRDVRGSEWIEIEV 312 >UniRef50_B4ESJ2 Integrase n=2 Tax=Proteus mirabilis RepID=B4ESJ2_PROMH Length = 333 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 184/374 (49%), Gaps = 45/374 (12%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAE 61 +R KN PNLY K + Y+ T K ++G+N++ AI A +AN + Sbjct: 3 RSRSAKNKGLPPNLYLR------KGIYYYRDVRTKKEFSVGSNKSLAITEAIQANLAIY- 55 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 + ++ DRI +T WLD Y ++ S ++ T + L++ Sbjct: 56 ---KPKESLVDRINNV--HCVTLHEWLDTY----RGKVNSRGLKEKTLYDYESRIKLIKL 106 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 I V RD+A + EY MA+++RS ++D F EA G + NP Sbjct: 107 HFNDCPIENVTPRDVATFISEYPKK---AMAKLLRSTMLDAFNEAIADGVIKE--NPVSV 161 Query: 182 TKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 TK P+ + R RLSLEE+K + T+ + LLA++T QR+ DI MK+ DI +D Sbjct: 162 TKPPKTSVQRSRLSLEEFKY---ALEHTNDKYRHMFLLAVLTAQRISDIINMKWDDIKND 218 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 L+V Q KTGSK+AIPLSLRL +I +S++DV+ + S + Sbjct: 219 RLYVTQIKTGSKVAIPLSLRLESIGYSIKDVLN--------------LMNRSSDKICGNT 264 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKE--QGLDTQKLLGHKTQQQT 359 A TL F +A + + TFHE RSLS RLY+E +K+LGHK+ + T Sbjct: 265 TAKTLRGKFIEA-----LPEYLENKPTFHEIRSLSARLYEEEKSAEFAKKILGHKSMRMT 319 Query: 360 DRYHDDRGKGWSKV 373 D+Y DDRG G+ ++ Sbjct: 320 DKYLDDRGNGYVEL 333 >UniRef50_C5BBQ8 Integrase n=3 Tax=Edwardsiella RepID=C5BBQ8_EDWI9 Length = 364 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 117/374 (31%), Positives = 183/374 (48%), Gaps = 33/374 (8%) Query: 10 VSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTRLAEQRTRQIL 68 NLY ++ +++P++G+ LG + EA+ A EAN + QR Sbjct: 12 KLPDNLYCK------GGFFIWRNPLSGQEMPLGYIKKNEAVRQAQEANQYIDTQR----- 60 Query: 69 AISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLI 128 + S W+ Y I R + NT + + + ++ G K I Sbjct: 61 -------PMVEACPSVSQWMAEYLRILGYR----GVAANTLRARRSQIKAVQTVIGQKNI 109 Query: 129 SAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRK 188 + V RDIA LL Y+ G A ++RS L +F+EA G + YNP T+ P + Sbjct: 110 AQVTTRDIALLLHHYVLIGHLSAAGLMRSFLNALFREAIAAGLI--DYNPVTQTRTPPIR 167 Query: 189 ITRQRLSLEEWKKIFDIA---DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV 245 + R+RL+ + ++ A + ++ ++ LAL+TGQR D+ +++ DI +D L V Sbjct: 168 VKRRRLTETMLQTVYAQALQLEPHKPWLPRSIELALLTGQRREDLCALRWQDIREDKLWV 227 Query: 246 IQEKTGSKIAIPLSLRLN--AINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 IQ KTG+++A+ L L L LR+V+ARCR S YL++ R G + Sbjct: 228 IQRKTGARLAMTLDLHLQLGDYPLRLREVLARCRIPGPSDYLLNSQRPRLNRRPGGSLVP 287 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ-GLD-TQKLLGHKTQQQTDR 361 +TLT FS+ D + E SP +FHE RSLS R+Y+ Q G + Q+LLGHK + T++ Sbjct: 288 DTLTKGFSRLMDKCGL-VQEISPPSFHEIRSLSSRMYQAQYGTEFCQRLLGHKNRHMTEK 346 Query: 362 YHDDRGKGWSKVAL 375 Y D R W + L Sbjct: 347 YLDLREALWQMIEL 360 >UniRef50_Q1GLB2 Phage integrase n=12 Tax=Rhodobacterales RepID=Q1GLB2_SILST Length = 411 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 76/377 (20%), Positives = 135/377 (35%), Gaps = 40/377 (10%) Query: 9 NVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQI 67 + + K Y +Y+ + ++G + + A + + Q + Sbjct: 42 DSQIAGFGVRVMPSGAKTYQAQYRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGE 101 Query: 68 LAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMK 126 + + KA T + +R+ + +T K+ + + L + G Sbjct: 102 NPAEE--ISQHRKAPTVAALCERFFEAHAK----ERCKPSTQKEYRRAIDLFIVPALGSF 155 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 + V+ RDIA+L ++ +P A VL +F A+ +G P G NP + R Sbjct: 156 KVVDVERRDIAELHHKF--RDKPHQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYR 213 Query: 187 RKITRQRLSLEEWKKIFDIADA------THRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 + LS E +++ + +M A L ++TG RLG+I +K+ I Sbjct: 214 EVKRERFLSQSELQRLGQVLTEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWGYITA 273 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 + + + KTG++ IPL RDV+AR Y++ G Sbjct: 274 NGMELPDSKTGARR-IPLPQPA-------RDVLARLPRTPGHPYVIE------GKLPGQY 319 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQ 357 L + + RD A + H+ R G+ Q +LLGH Q Sbjct: 320 ATD--LQHPWRRIRDRAGL-----CGVRIHDLRHTYASNAVSAGMPIQMVGRLLGHTQIQ 372 Query: 358 QTDRYHDDRGKGWSKVA 374 T RY + A Sbjct: 373 TTMRYAHLADDPVRQAA 389 >UniRef50_A1JLQ1 Phage integrase n=7 Tax=Yersinia RepID=A1JLQ1_YERE8 Length = 351 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 103/334 (30%), Positives = 174/334 (52%), Gaps = 21/334 (6%) Query: 1 MAARPRKNNVSVP-NLYPLYSRKVNKVYWRYKHPVTGKFHALG-TNEAEAIAIATEANTR 58 MA+RP++ + ++P NL K + +++P+TGK LG +AI+ A +AN Sbjct: 1 MASRPKRYDANLPKNLTYRRYYKS----YYWRNPLTGKEIPLGQIARRDAISQAIQANNY 56 Query: 59 LAEQRTRQILAISDRIATSKGKAI------TTSTWLDRYQAIQDDRLKSGDIRLNTYKQK 112 + Q +A+ +R+ T ++WL RY + LK ++ NT K + Sbjct: 57 IES--NFQPVALLERLQAPAPTPAAKAEINTVASWLKRYSEL----LKRRELAENTMKMR 110 Query: 113 AKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEV 172 + +++ G + I V + IA ++ Y+ G+ MA +RSVL DVF+EA G + Sbjct: 111 VLQIGYIKQEFGERPIETVTTKHIADFINTYVDNGKSSMAVNLRSVLSDVFREAIADGLI 170 Query: 173 PPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISR 232 NP AT+ P K+ R+RL + KI++ A ++ +M LAL+TGQR D+ + Sbjct: 171 ST--NPVEATRTPSPKVKRERLDYAAFCKIYEAAGQQRNWVQLSMALALITGQRRDDVRQ 228 Query: 233 MKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 +K SD+ D L ++Q KT +IAI LSLRL +N ++ D++ +C + + S YL+ + Sbjct: 229 LKRSDVHDGKLWIVQSKTKMQIAISLSLRLEIMNTTVGDIIEKCLNNSKSEYLISSSNKS 288 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSP 326 S + G + A++LT F KA + + P Sbjct: 289 SGRKPG-ALNADSLTKAFVKALKATDLVYDISLP 321 >UniRef50_D0L1C6 Lambda integrase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1C6_HALNC Length = 385 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 122/393 (31%), Positives = 192/393 (48%), Gaps = 34/393 (8%) Query: 1 MA-ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGT-NEAEAIAIATEANTR 58 MA R RK N NLY + Y+ Y++P GK + LG + EA A EAN Sbjct: 1 MARPRSRKKNDLPANLY-----EPRAGYFVYRNPENGKTYTLGRISRGEARDQAIEANRT 55 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 ++ ++++ A + T S WL++Y + LK ++ NT +Q + Sbjct: 56 FEQRAEQRLINRLHAQALGE----TFSDWLNKYAEV----LKRRNLADNTMRQHKWRIKT 107 Query: 119 LRERAGMKLISAV-DVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + ++ G + + + R A+ LD + + R A RS L+D F A G V N Sbjct: 108 MEQQFGAEPFVRLHETRHWAEWLDTFTEQDKTRSAIAWRSWLLDCFNAAIAAGWV--DRN 165 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFS 236 P + P + R RLSLE + I +A + +++ ++ LAL+T QR DI+ ++F Sbjct: 166 PIEPIRAPTTIVKRDRLSLEAARAIICVAREQKDQWIARSIELALITAQRREDIASLQFR 225 Query: 237 -------DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 + D L+V Q+KTG+++AIPL+L + I +L D + CRD+ S +L+H Sbjct: 226 KRDAASGWVESDSLYVTQQKTGARLAIPLTLAMPEIGMTLGDAIDACRDHIASRWLIHQT 285 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLAR------IDWGEGSPATFHEQRSLSERLY-KE 342 + G+Q+ +T+T F+ RD A + + P +FHE RSLS RL+ Sbjct: 286 NPHGNSPAGSQIWRDTITRRFADMRDEAARRSETPLWRQDKEPPSFHELRSLSLRLHTAR 345 Query: 343 QGLD-TQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 G D Q L GHK + TD Y D RG W K++ Sbjct: 346 HGKDFAQALAGHKDARTTDTYRDIRGSEWVKLS 378 >UniRef50_A1AUY6 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1AUY6_PELPD Length = 402 Score = 230 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 65/374 (17%), Positives = 128/374 (34%), Gaps = 32/374 (8%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIATEANTRLAEQRTRQ 66 ++ L+ S K + ++++++ G+ +LG A ++ A R Sbjct: 38 DIECIGLHLRVS-KNGRRFFQHRYRYLGRKMCLSLGEFPAVSVQDARSRVAEHKALLARD 96 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGM 125 ++R +T + ++ L T+ + L G Sbjct: 97 KDPAAERGKV--RADLTFEEFSTQH------YLPHAKAHKQTWDDDKNQIERRLNPILGK 148 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 + A+ RD+A + + A + + L + A +G + NPA ++ Sbjct: 149 LRLQAITPRDVAMVHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEK--NPAGGQEKF 206 Query: 186 RRKI-TRQRLSLEEWKKIFDIADATHRYM-GNAMLLALVTGQRLGDISRMKFSDI--WDD 241 + + LS EE K + + A+ + L TG R +I +++ ++ ++ Sbjct: 207 KEGPLRERYLSKEELPKFLKALEDQDDLLSVAALRMLLYTGCRREEIMSLRWENVRLDEE 266 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 + + + K G + L+ R + L+ + S Y+ + T + Sbjct: 267 RIFLPKTKNGRSRTVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKGYIYD-- 324 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQ 358 L F KA A ID H+ R + G D Q+LLGH+ Sbjct: 325 ----LRKPFEKACLNAGIDN-----FRIHDLRHTFASMAVSSGADLYAVQRLLGHQDIAM 375 Query: 359 TDRYHDDRGKGWSK 372 T RY K Sbjct: 376 TQRYAHLNADDLKK 389 >UniRef50_B4T7X0 Integrase n=14 Tax=Enterobacteriaceae RepID=B4T7X0_SALHS Length = 284 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 112/287 (39%), Positives = 164/287 (57%), Gaps = 11/287 (3%) Query: 84 TSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEY 143 S W+DRY+ + R ++ +NTYK ++ ++ +RE+ G +++ V R IA+ L+ + Sbjct: 1 MSAWIDRYEVLLQRR----NLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESW 56 Query: 144 IAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIF 203 I G+ MA +RSVL D+F+EA G + NP AT+ P K+ R+RL LE + Sbjct: 57 ITEGKNTMAGAMRSVLSDMFREAIVEGHIVK--NPVEATRIPEIKVARERLQLETYNATR 114 Query: 204 DIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLN 263 A+ + AM LALVTGQR DI MKFSD++D+ L+V Q KTG KIAIPLSL L Sbjct: 115 AAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLR 174 Query: 264 AINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGE 323 A L V+ RCR + + +++ + + + LT F KAR + +++ Sbjct: 175 ATGLRLGTVIDRCRLVSRTDFMI--SAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFS- 231 Query: 324 GSPATFHEQRSLSERLYK-EQG-LDTQKLLGHKTQQQTDRYHDDRGK 368 +P TFHE RSL+ RLYK E G + QKLLGH ++ T Y D+R Sbjct: 232 NNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSENTTKLYLDERDN 278 >UniRef50_Q3A6E0 Site-specific recombinase/integrase n=3 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A6E0_PELCD Length = 482 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 70/375 (18%), Positives = 134/375 (35%), Gaps = 32/375 (8%) Query: 6 RKNNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRT 64 + + P L+ + + NK + +RY+ K A+G + +A + + Sbjct: 117 TEYSTGEPGLHICVNMRGNKRWLFRYRLYGRKKVVAIGPYPSIEPPLAKQMANEMQRNLA 176 Query: 65 RQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAG 124 +S R + K T + +Y + + K + + + G Sbjct: 177 LGERVVSPRAQQKQQK--TFGEFARKYLEHAK------QTKKSWKDDYNKLTNQIIPKWG 228 Query: 125 MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 ++ + ++I L++ A A +VL ++ A +GE+ P NP + Sbjct: 229 EVPLTCLTPKEIQGYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPWKNPMPGVSK 288 Query: 185 PRRKITR-QRLSLEEWKKIFDIADATH-RYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 R R + LS+EE K+ + + A+ L L TG R G++ + K+ D+ + Sbjct: 289 FRDNPGRTRYLSMEECKRFLAALEEAPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEG 348 Query: 243 LH--VIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 + + K G + L+ A L+D + YL + Sbjct: 349 RTMLLPETKNGKSRVVHLNSLSLAEIEKLKDF-----RNPSNPYLFP------GSSEDKP 397 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL---LGHKTQQ 357 + T+ F A LA + +G+ H R L G + + LGH + + Sbjct: 398 L--GTVRKTFEHALKLAGL---QGTDVVIHTLRHTHASLLANLGESLETIKVSLGHSSVK 452 Query: 358 QTDRYHDDRGKGWSK 372 T+RY G Sbjct: 453 MTERYAHISGSKTKD 467 >UniRef50_B7V4V5 Phage integrase, putative n=2 Tax=Pseudomonas RepID=B7V4V5_PSEA8 Length = 370 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 110/378 (29%), Positives = 161/378 (42%), Gaps = 35/378 (9%) Query: 1 MAARPR--KNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTR 58 M+ RPR N NLY R +RYK P GK+ G + A+AI A + N Sbjct: 1 MSPRPRNKANKGLPQNLYLDARR----GTYRYKRPTDGKWFPFGPDRAKAIDAAKQLNLE 56 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 + +LD+Y+ ++ T A Sbjct: 57 FMRGADLVN-------KVQGAGSDLFVAFLDKYEREILP---PRELAKGTLDLYAVRFRQ 106 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 R + + + +R +A+LLD PR A R++L+D+F A G P NP Sbjct: 107 FRAAWPTQAVDEITIRMVAELLDSL----TPRAANQARALLVDIFNHAAAKGLCPD--NP 160 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 A +T K R+R ++E + I + A ++ NA+ LAL+T QR DI M+F D+ Sbjct: 161 AASTIARIEKKQRKRHTVEGLRAIREQA---PAWLQNAIDLALITAQRRTDILAMRFDDV 217 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ---- 294 D L+V+Q+KT + L+ V+ARCRD S +L+H + Sbjct: 218 RDGFLYVVQQKTAKASDAAWIR--FRVTAELQAVLARCRDNVPSPFLIHRRPERKRQKQA 275 Query: 295 --AERGAQVKANTLTMNFSKARDLARI--DWGEGSPATFHEQRSLSERLYKEQGLDTQKL 350 E +V+ LT F ARD A W E FHE R+LS LYK+ G D QK+ Sbjct: 276 EQKEHWTKVEERYLTRAFKDARDAAGCYSGWSEEEMPGFHEIRALSLHLYKKAGKDGQKI 335 Query: 351 LGHKTQQQTDRYHDDRGK 368 GH +++ T Y D Sbjct: 336 AGHASEEMTRNYQRDHAD 353 >UniRef50_C5CJJ9 Integrase family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CJJ9_VARPS Length = 362 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 174/358 (48%), Gaps = 21/358 (5%) Query: 23 VNKVYWRYKHPVTGKFHALGT-NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKA 81 Y+ + +PV K+ A+G A+A A EAN +EQ + L I + K Sbjct: 20 SRPGYFVWFNPVAKKYVAIGRVTLADARLQAIEANLWASEQLGKARL-----IDRLQQKD 74 Query: 82 ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLD 141 T WL + + NT K + E G + + V+D A LD Sbjct: 75 KTVREWLKEWIGEL-------TLAENTLKSYRAKSKAINEEMGDLALGRLTVKDTANALD 127 Query: 142 EYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKK 201 E AQV RSVLI F A G + NPAL T+ + + RQR + ++K Sbjct: 128 EIKKKRGAPTAQVARSVLISAFGNAITKGHMET--NPALVTEAKKTTVARQRFTTATFEK 185 Query: 202 IFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTG--SKIAIPLS 259 ++ ++ NA LLA++TG R DI+ +KF+D+ DD+L V +K+ KIAIPL+ Sbjct: 186 VWAGLQDGPPWLRNATLLAMITGLRREDIAGLKFTDVADDYLLVAPKKSQGMVKIAIPLA 245 Query: 260 LRLNAINWSLRDVVARCRDY-AVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR 318 L A+ SL+D +A CR VS Y+VH T ++ G ++ +T+TM FS+ A Sbjct: 246 LYSEAMKMSLKDAIAVCRRTGVVSQYMVHQTEHTGRSSPGQRMSLSTVTMRFSEYVAKAL 305 Query: 319 IDWGEGSPATFHEQRSLSERLY-KEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 + TFHE RSL +R Y + G+DT+ LLGH D Y ++RG + KV + Sbjct: 306 GEGENL--PTFHELRSLCKRSYQAQGGVDTKALLGHLADSSADLYENNRGAEFKKVKI 361 >UniRef50_A1B6Q9 Phage integrase family protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B6Q9_PARDP Length = 393 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 65/367 (17%), Positives = 125/367 (34%), Gaps = 38/367 (10%) Query: 9 NVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQI 67 + + K+Y +Y+ + +G + A +A + Sbjct: 23 DEELKGFGLRVYPSGRKMYLAQYRAGGRSRRVNIGLHGAMTPEMARTEAMKYLSDVRLGA 82 Query: 68 LAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR-ERAGMK 126 +R + + T + R+ + + +TY + + + L R G Sbjct: 83 DPAGER--DRRKASPTIKEFSKRFLSDHVA----LHCKASTYGEYERSIDLFINPRFGSH 136 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 I + D+ L P A VL +F A +G G NP K+ R Sbjct: 137 RIIDITRADVVGLHQSM--RHIPYQANRTLGVLSVMFTVAHAWGVRTDGVNPCWKVKRYR 194 Query: 187 RKITRQRLSLEEWKKIFDIAD--ATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDH 242 + + L+ +E ++ + D N + L L+TG RL +I +K+ D + Sbjct: 195 EEKRERYLTPDELARLGKVLDCATEEPEAANCIRLLLLTGCRLSEIQTLKWRYVDYRNGL 254 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 L + KTG+K+ +P+ + ++ + + Y++ G + Sbjct: 255 LRLPDSKTGAKL-VPIGKAAIKVLKTIPKI-------DGNPYVIT------GRMEGQHLT 300 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQT 359 + + + R A +D H+ R + G D +LLGH Q T Sbjct: 301 D--MQKPWRRLRKRAGLDDLR-----IHDLRHSFASDALQLGQDLTMIGRLLGHTQVQTT 353 Query: 360 DRYHDDR 366 RY + Sbjct: 354 ARYAHLK 360 >UniRef50_C0GWH6 Integrase family protein n=3 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GWH6_9DELT Length = 394 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 62/380 (16%), Positives = 123/380 (32%), Gaps = 46/380 (12%) Query: 7 KNNVSVPNLYPLYSRKVNKVYW-RYKHPVTG-KFHALGTNEAEAIAIATEANTRLAEQRT 64 + VP Y+ RY+ K + ++ + A + ++ Q T Sbjct: 25 YFDSDVPGFIMEVRSTGKSTYYQRYRDKFGRLKQARIAPVDSITLEEARQKAKQIRSQTT 84 Query: 65 RQILAISDRIATSKGKAITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRER 122 + A T ++ D+Y + ++ Q +K + + Sbjct: 85 MGFDPRDE--AEKNRNTPTFKEFIRDQYIPYIQ-------VHKRSWDQDSKMLELRVLPL 135 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 G +S + D+ Q ++ AG +P +++ +F A+ + + PA Sbjct: 136 WGNMKMSEITRDDVQQFQSNFLRAGCKPGTVNRYMALVKYIFNLAEKWDVIEKT--PARH 193 Query: 182 TKQPRRKI-TRQRLSLEEWKKIFDIADA-THRYMGNAMLLALVTGQRLGDISRMKFS--D 237 + + LS EE K++ + + + + L ++TG R ++ + + D Sbjct: 194 ISRLEDNNCKERYLSSEETKRLLGELKNCKSQVVPDIIELLILTGARKSEVVNLPWQELD 253 Query: 238 IWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + + + K ++ IPLS + R + S Y+ Sbjct: 254 LKQGLWTIPPERNKAKTRKTIPLSQGALR--------ILEKRKHNGSEYVFP------NP 299 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLG 352 + G +K + + R A I H+ R L G + QKLLG Sbjct: 300 KTGGPIKH--FHNTWDRVRKNAGIPD-----VRIHDLRHNFASLLVNSGRSLYEVQKLLG 352 Query: 353 HKTQQQTDRYHDDRGKGWSK 372 H T RY Sbjct: 353 HSNISTTQRYAHLTQDTLRD 372 >UniRef50_A5W814 Phage integrase family protein n=4 Tax=Proteobacteria RepID=A5W814_PSEP1 Length = 326 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 139/372 (37%), Gaps = 54/372 (14%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 RPRK + +P P K Y GK+ L + A+ A ++ + Sbjct: 2 RPRKKDRHLP---PCMYMKHGAYYLV----RKGKWERLDKDYQGALL----AYAKIMGGK 50 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 + + +D R + NT KQ L++ Sbjct: 51 GQGEMPR----------------LIDDALDAMRKR-----LAENTIKQYEAAAEKLKKYL 89 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 V R +A L + + P MA V S L VF A V NP K Sbjct: 90 AEFEPRQVLPRHVAAL--KLHMSDTPNMANRVISFLRMVFNYALEQQIV--DSNPCTGIK 145 Query: 184 QPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 + K + ++ EE+ I DA Y+ + + + +TGQR+GD+ +K SDI + + Sbjct: 146 RHTEKKRDRYITDEEFAAI---CDAASPYIRSILEMCYLTGQRIGDVLAIKLSDISEKGI 202 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 Q+KTG+K+ + ++ L + + + + R G V Sbjct: 203 AFDQQKTGAKLIVGMTPDLEQLIARTKAIPRKVR----------GLTLFCTRGGGKPVSY 252 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYH 363 T+ F KA + A++ AT H+ R+ S +QG D QKL GH + T+RY Sbjct: 253 ETVKDAFKKACEKAKVT-----GATIHDLRAKSLTDTDDQGNDAQKLGGHTNAKMTERYL 307 Query: 364 DDRGKGWSKVAL 375 R ++ + Sbjct: 308 RLRKIDIAQPPV 319 >UniRef50_C0DS64 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DS64_EIKCO Length = 355 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 80/372 (21%), Positives = 146/372 (39%), Gaps = 37/372 (9%) Query: 10 VSVPNLYPLYSRKVNKVYWRY-KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQIL 68 ++P KVY+ Y K+ LG++ EA+ + +++ T +I Sbjct: 6 RNLPMRMRQKKTSSGKVYFYYDTCAKPRKWLPLGSDFFEALRKYADYEQEYSQELTARIE 65 Query: 69 AISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA-GM-- 125 + T +RY + T + L E G Sbjct: 66 REA-----------TFRVVAERYVRTVLP-----TLSPRTQSDYLYQLKFLYEYFDGDNP 109 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 I+ + DI + L E+ A + R A ++ +F A+ +G NP + Sbjct: 110 APINQILSVDIYEYL-EWRQAAKIR-ANREIALFSVIFNWARKWGY-TNNENPCRGVNKY 166 Query: 186 RRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV 245 + ++ E++ ++++ A+ R++ ML+A GQR+ D +++ +DI D L + Sbjct: 167 QETGRHVYITDEQYWRLYECAE---RHLQLLMLVAYFIGQRVADCLKIRTTDIKDGELWI 223 Query: 246 IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANT 305 Q K +K+ I L+ L + D++ R R YL Q RG + Sbjct: 224 EQNKVQTKVRIKLTGELAEVL----DLILRERGEQKHDYLFVSL--GRQRHRGQPMTYAM 277 Query: 306 LTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ-GLDTQK-LLGHKTQQQTDRYH 363 L +AR+ A I+ F + R+ + + G++ + LLGH TQ T RY Sbjct: 278 LRGAMDRAREKAGIEKAA---FQFRDLRAKAATDTDDAVGIEAARVLLGHTTQNMTKRYI 334 Query: 364 DDRGKGWSKVAL 375 +R S+ A+ Sbjct: 335 RNRKGHLSEPAV 346 >UniRef50_Q2RHJ2 Phage integrase n=3 Tax=Firmicutes RepID=Q2RHJ2_MOOTA Length = 390 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 126/383 (32%), Gaps = 48/383 (12%) Query: 5 PRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRT 64 P++ +Y + GK L + + L +Q+ Sbjct: 2 PKRRGHGEGTVYQRPDGRWTAQITVGIDHE-GKQRRLTLYGKSKKEVLEKLTQALYQQQN 60 Query: 65 RQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERA 123 + + IT WL+R+ +R +T++ + + Sbjct: 61 GGFI---------EPSKITVEQWLNRWLTDYAK----PHLRQSTWESYETVLRLHVIPTL 107 Query: 124 GMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 G + + DI +L + +G P + + VL + +A+ G + NP A Sbjct: 108 GSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMSQARESGLL--LQNPTEAA 165 Query: 183 KQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW-- 239 K PR + Q L+ E+ K+ + A + A LLAL TG R G+I +++ D+ Sbjct: 166 KPPRHPKKKVQPLNPEQVKRFLETAKQDP--LYPAFLLALGTGLRRGEILGLRWQDLDLQ 223 Query: 240 -------------DDHLHVIQEKTGSKIA-IPLSLRLNAINWSLRDVVARCRDYAVSAYL 285 + L + KT IPL + A + V + + Y Sbjct: 224 KGILQVRQSLIRTREGLKFEEPKTEKSRRQIPLPPSVVAALKRHKAWVNQNKLILGPDYE 283 Query: 286 VHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL 345 H E G F++ D A + H+ R L +G+ Sbjct: 284 DHDL--VFPVENGRPRDPKGFAEYFNRLLDKAGLPHIR-----LHDLRHTHATLLLLEGV 336 Query: 346 D---TQKLLGHKTQQQT-DRYHD 364 Q+ LGH T T D Y Sbjct: 337 HPKVVQERLGHSTVSITLDIYSH 359 >UniRef50_A3D8Y2 Phage integrase family protein n=4 Tax=Shewanella RepID=A3D8Y2_SHEB5 Length = 376 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 53/374 (14%), Positives = 121/374 (32%), Gaps = 41/374 (10%) Query: 8 NNVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + P + + Y+ R+++ + H +G + A + + Sbjct: 24 YDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDAR-------LEARKH 76 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMK 126 I A+ + ++T + + + K + + + G Sbjct: 77 IDALRYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTL----LNSQRGFTRHIAPVLGDV 132 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 ++A+ + I Q D A MA + +L + ++A+ Y P NP K+ + Sbjct: 133 PLAALTRQHIEQWFDGMHA--SKGMANRLLPLLSVMMQQAEVYEYRPAQSNPCKGFKRYK 190 Query: 187 RKITRQRLSLEEWKKIFDIA---DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL 243 + + LS EE K+++ + + L ++TG R ++ +K++D H Sbjct: 191 STHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHW 250 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 ++ KTG+K ++ +S + Sbjct: 251 YLPDSKTGAKTVF----------------LSSFARELLSDWPQVSEHLFWHQSPSQPFTP 294 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTD 360 L + R+ + H+ R + + ++ +LLGH + T Sbjct: 295 ARLDRFWRPFRE-----TIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLGHALPETTL 349 Query: 361 RYHDDRGKGWSKVA 374 +Y + + A Sbjct: 350 KYTHLAKRDVQQAA 363 >UniRef50_D2YQV3 Phage integrase family protein n=2 Tax=Vibrio RepID=D2YQV3_VIBMI Length = 402 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 77/379 (20%), Positives = 139/379 (36%), Gaps = 40/379 (10%) Query: 9 NVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQI 67 + L + +R+ K + +RY T K LG A I A + + Sbjct: 38 DELCSGLKMIVNRQGRKRFLFRYTLHGTKKSIQLGEYPALDINTARQIANDHKREIALGN 97 Query: 68 LAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMK 126 + I K +T + + L + T K A + + G K Sbjct: 98 DPKA--IRDEKRNVLTFQEFSE------LHYLPYAMMNKLTAKSDAGSLKLHFYSKWGKK 149 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 ++ + +DI +LLD + +P +RS+++ +F+ A +G V NP ++ + Sbjct: 150 PLTDIGQQDIQKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYV--DSNPGQYIRKLK 207 Query: 187 RKITRQR-LSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSD--IWDDH 242 RQR LS E + +R NA+ AL+TG R+G+I+ K+ + DD Sbjct: 208 ENNVRQRFLSRAEVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWECLTVDDDG 267 Query: 243 ---LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 L + K+G + L+ ++V+ R + + + G Sbjct: 268 NWSLFLPHTKSGLSRTVLLNHLA-------KEVINDQRRFQQ----LKNPYIFAGDAPGR 316 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG----LDTQKLLGHKT 355 + F++ + A I H+ R + G D Q LLGH++ Sbjct: 317 PIAHP--KKAFARIKKAAGITDN----FRIHDLRHSFASILINSGNATLYDVQHLLGHQS 370 Query: 356 QQQTDRYHDDRGKGWSKVA 374 Q + RY +V+ Sbjct: 371 PQTSTRYAHLASSRLREVS 389 >UniRef50_A8MGP9 Integrase family protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MGP9_ALKOO Length = 369 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 64/370 (17%), Positives = 126/370 (34%), Gaps = 46/370 (12%) Query: 19 YSRKVNKVYWRY-KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 +K +K Y GK + A E++ +IL + Sbjct: 5 IVKKNHKWYIVVDSIDENGKRKRKWISGFNTQKEA--------EKKLPEILQQLNTNTFV 56 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIA 137 IT ++ + ++ TY + + + E G + + I Sbjct: 57 DTNNITLRDYMQLWLEDYAK----PNVAPTTYDKYTYAANKVSEILGNMKLQQIKPIHIQ 112 Query: 138 QLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR-RKITRQRLS 195 QL+++ + P VL +A + + YNP +A PR K L Sbjct: 113 QLVNKLNNSDVTPSTVLSYYRVLNTAINQAVKWQFIQ--YNPCVAVTPPRNTKNKMMILD 170 Query: 196 LEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD--DHLHVI------- 246 +E + + D + + ++LAL+ G R G+I +++ +I +H+ Sbjct: 171 QDEIQILLD--KSKDHVLYPVIVLALLCGLRRGEILGLQWENIDFFSGVIHLENNLVMAN 228 Query: 247 ------QEKTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 + KT + + A+ +S + + ++ + S+Y H E G Sbjct: 229 NESILKETKTSTGRRAVDISSNVVEVLKKVKKQKMSYKLLYGSSY--HDSNFVCTWEDGR 286 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQ 356 + + + F+K A + FH+ R + + G+ Q+ LGH + Sbjct: 287 PFRPDYIPKAFAKILVSANLP-----KIRFHDLRHTHASILLKSGIHPKVVQERLGHSSI 341 Query: 357 QQT-DRYHDD 365 T D Y Sbjct: 342 SITLDTYSHL 351 >UniRef50_A4TWM2 Phage integrase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWM2_9PROT Length = 387 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 67/383 (17%), Positives = 113/383 (29%), Gaps = 42/383 (10%) Query: 6 RKNNVSVPNLYPLYSRKVNKVYWR-YKHPVTG-KFHALGTNEAEAIAIATEANTRLAEQR 63 R + V +W Y P + +G ++ A L Q Sbjct: 24 RITDTEVTGFVMEVWPTGGITFWCKYTDPAGRSREVKIGKAADISVEQARRKAKELRAQV 83 Query: 64 TRQILAISDRIATSKGKAITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRE 121 D+ T ++ ++Y DRL+ +Y + L Sbjct: 84 ALSGDPAGDK--DKHRAVPTFKAFVTEQYLPFAKDRLR-------SYSDQESMCRLRLIP 134 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAA-GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 G K + + DI +L P ++ VF A + G NP Sbjct: 135 TWGAKRLDEIRTTDIVELQRRLRDENLSPSTVNRHVALAKRVFNLALRWQ-AYEGRNPCQ 193 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIADATH-RYMGNAMLLALVTGQRLGDISRMKFSDIW 239 + R + L+ +E +++F D R N + L +TG R + +F DI Sbjct: 194 HVEFAREHQRERFLTPDEMRRLFQALDDEPSRSAANCIALLALTGARKSEALNARFDDID 253 Query: 240 --DDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + V + K+G IPLS ++ +L S Sbjct: 254 LPNRVWTVPASRSKSGKVRRIPLSEAAV-------KLLVGLPPEPDCPWLFPNAASDGPI 306 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLG 352 E + +++ + A + S H+ R L G Q +LG Sbjct: 307 EN--------IRRCWNRLKAAATLP----SDTRPHDLRHSFASLLVGSGQSLYSVQTILG 354 Query: 353 HKTQQQTDRYHDDRGKGWSKVAL 375 H + T RY L Sbjct: 355 HASPNMTARYSHLSNTSLVDRVL 377 >UniRef50_Q1RJE3 Integrase n=9 Tax=Rickettsia RepID=Q1RJE3_RICBR Length = 388 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 67/384 (17%), Positives = 134/384 (34%), Gaps = 40/384 (10%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWR-YKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 A R + L + S +K+++ +G +I A + L Sbjct: 26 AKRDIYKDTKEKGLLLIVSYGGSKIFYLGVVLSKKYHRIKIGVFPYLSIIDARLKASELK 85 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 + + I ++ SK T + DRY I +K A V Sbjct: 86 GKIAQGYNPIEEKARLSKE--PTFKEFYDRYLDEYS------KINNKRWKDYAASVDRYA 137 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 + + IS + DI +L ++ G+ A VL VF +A + + NP + Sbjct: 138 KHLYNRKISTIQKADIQELFNKLTKTGKYG-ANRFLEVLSPVFSKAIEWELLT--VNPVI 194 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 K+ + + + L+ EE + F + ++ M + L+AL T R ++ M++ I Sbjct: 195 GIKKHKEQSRDRYLTREEIPRFFTAISEEQNQVMKDFFLIALYTSVRKDNVLTMRWEQIS 254 Query: 240 --DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 D L++ K G +PL +++ ++ + S ++ S+S + Sbjct: 255 FADKQLYLPDTKNGDPHRLPL-------LDQAVEILKARKEQSDSIWVFPSETSSSGHLQ 307 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHK 354 + + + A I+ H+ R G + +LL H+ Sbjct: 308 EPK-------KAWKRICKKAGIENLR-----IHDLRRTIPSWMAMTGANQYVIGQLLNHR 355 Query: 355 TQQQTDRYHDD---RGKGWSKVAL 375 + T Y + + + A+ Sbjct: 356 DPRSTAVYTRLATDTAREYMQRAI 379 >UniRef50_Q1NPW4 Phage integrase n=5 Tax=Deltaproteobacteria RepID=Q1NPW4_9DELT Length = 465 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 54/375 (14%), Positives = 117/375 (31%), Gaps = 41/375 (10%) Query: 7 KNNVSVPNLYPLYSRKVNKVYW-RYKHPVTG-KFHALGTNEAEAIAIATEANTRLAEQRT 64 + ++ K Y RY+ + H +G + + A A TRL + Sbjct: 111 YYDEALTGFILEVRSTGGKTYHLRYRDGHGKLRQHKIGGADDISFDKAQAAATRLRSRVV 170 Query: 65 RQILAISDRIATSKGKAITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 +++R +K + T + ++Y + + + L Sbjct: 171 LGEDPLAER--QTKKQVPTLEEFAAEKYMPYVKGY------KRSWKSDFGYLKNHLLPLF 222 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRP-RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 G + + + ++ +L A G +L +F A+ + NP Sbjct: 223 GNQHLDQIKQAEVIELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNPTTGV 282 Query: 183 KQPRRKI-TRQRLSLEEWKKIFDIAD-ATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 + L+ +E ++ + + + + + L L+ G R ++ ++ D Sbjct: 283 ALFEANNGRERYLTEDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDL 342 Query: 241 DH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 + K+G +PLS + S+ + S Y+V ++ Sbjct: 343 ARRSWRIPLSKSGKARYVPLSTAALEVLASIPRL---------SPYVVPNPKTLQPFV-- 391 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKT 355 ++ ++ AR A + H+ R G + +LLGH Sbjct: 392 ------SVFRSWDTARKKAGLPD-----VRMHDLRHSFASFLVNSGRSIYEVSQLLGHSQ 440 Query: 356 QQQTDRYHDDRGKGW 370 + T RY Sbjct: 441 LKTTQRYSHLSNDTL 455 >UniRef50_C6USQ2 Integrase n=3 Tax=Escherichia coli O157:H7 RepID=C6USQ2_ECO5T Length = 230 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 143/239 (59%), Gaps = 12/239 (5%) Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEE 198 +L+ Y+A G+ A+V+RS L+DVF+ A G V NP T+ + ++ R RL+ E Sbjct: 1 MLNTYVAEGKAVSARVIRSTLVDVFRGAIAEGHV--ATNPVTTTRAAKSEVRRSRLTANE 58 Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPL 258 + I+ A+ ++ +M LA+VTGQR+GD+ RMK+SDI D HLH+ Q KTG+KIAIPL Sbjct: 59 YVAIYHAAEHLPIWLRLSMDLAVVTGQRVGDLCRMKWSDINDGHLHIGQSKTGAKIAIPL 118 Query: 259 SLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR 318 +L ++A++ SL D + +CR+ + S ++ + T++ +KAR+ + Sbjct: 119 ALTIDALDISLVDTLQKCREASSSETIIASTYH-------EPLSPATVSRYLTKARNASG 171 Query: 319 IDWGEGSPATFHEQRSLSERLYKEQG--LDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 I + +G P TFHE RSLS RLY+ Q Q+LLGHK+ Y D RG+ W K+ + Sbjct: 172 ISF-DGDPPTFHELRSLSARLYRNQIGYKFAQRLLGHKSDSMAAHYRDSRGREWDKIEI 229 >UniRef50_C9CXZ5 Phage integrase n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CXZ5_9RHOB Length = 391 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 67/374 (17%), Positives = 123/374 (32%), Gaps = 45/374 (12%) Query: 9 NVSVPNLYPLYSRKVNKVY-WRYKHPVTGK-----FHALGTNEAEAIAIATEANTRLAEQ 62 + S+ + K Y ++Y+ G+ + +G + A A Sbjct: 23 DDSLAGFGVKVLQSGKKRYIYKYRTHGGGRRAQTRWMTIGNYGEIPLETARNIALECAAM 82 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR-E 121 R SD+I K +A + R++ R ++ T + + Sbjct: 83 VARGQDPQSDKI--KKREAPSLVDLWGRFEESDMKR-----LKPATIRDYRSLWKNILEP 135 Query: 122 RAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 G + ++ + D+ +L + P A +VL + A+ + G NP Sbjct: 136 ALGKRRVADISRADVDRLHRSM--SDTPYQANRSIAVLSKMMTLAEIWEWRDQGTNPCRY 193 Query: 182 TKQPRRKITRQRLSLEEWKKIFDIADA------THRYMGNAMLLALVTGQRLGDISRMKF 235 + R + LS EE +++ M N L L+ G R +IS ++ Sbjct: 194 VTRHREGKRERYLSTEELERLGAALTNLVDLGLLWPDMANLFRLLLLVGARRSEISNCEW 253 Query: 236 SDIWDDHLHV--IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS 293 + I + + KTG+K PL L AI V+ + F Sbjct: 254 NWIDWERRIIALPDSKTGAK---PLFLSNEAIT-----VLQNQKITTRHQSSKFVFPGAK 305 Query: 294 QAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKL 350 + L+ + + A ++ H+ R + + QG+ +L Sbjct: 306 ANKAIV-----NLSKPWKLICEEAELENLR-----IHDLRHTAASIAVGQGVALPIIGRL 355 Query: 351 LGHKTQQQTDRYHD 364 LGH Q T RY Sbjct: 356 LGHTQTQTTARYAH 369 >UniRef50_A3V904 Phage integrase n=5 Tax=Rhodobacteraceae RepID=A3V904_9RHOB Length = 445 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 59/375 (15%), Positives = 119/375 (31%), Gaps = 40/375 (10%) Query: 8 NNVSVPNLYPLYSRKVNKVYW-RYKHPVTG-KFHALGTNEAEAIAIATEANTRLAEQRTR 65 + V L Y+ RY + ++ L + A + + Sbjct: 26 FDRRVKGLVLEVRTSGGMTYYMRYTDDRSKTRYIKLANVGDITLPQARGLCRQHRNKLAL 85 Query: 66 QILAISDRIATSKGKAITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAG 124 I +++R K T ++ +RY +S + L + G Sbjct: 86 GIDPLAER--AVKRLVPTFGDFVRERYLPFAQANKRSWKTDETLART------HLTPQLG 137 Query: 125 MKLISAVDVRDIAQLLD-EYIAAGRPRMAQVVRSVLIDVFKEA-QHYGEVPPGYNPALAT 182 + + + D+ L A P +L +F A + + NP Sbjct: 138 TMHMDEITIEDVLSLQQIGLKAGAAPASINRRLILLRYMFNLAWRDWKIAGVTGNPTHGV 197 Query: 183 KQPRRKITRQRLSLEEWKKIFDIA--DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 + + ++R E + A ++ ++ + + + L+TG R ++ + D+ Sbjct: 198 RLLKENNQKERYVRAEELALLYRAVKESQNKMLQHIVAFLLLTGTRRNEVLHATWEDVDL 257 Query: 241 --DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 + Q K+G +PL+ A V+ + + + S Y+ + G Sbjct: 258 IKGMWRIPQTKSGFARHVPLNDGAYA-------VLQQMQGRSQSHYIF------GNPKTG 304 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKT 355 + ++ AR A + H+ R L G + QKLLGH Sbjct: 305 KPYVH--VWYAWNSARVKAGLPD-----VRLHDLRHTFASLLINNGRSIYEVQKLLGHTQ 357 Query: 356 QQQTDRYHDDRGKGW 370 + T RY + Sbjct: 358 IKTTQRYAHLTQETL 372 >UniRef50_UPI000169495E prophage LambdaBa04, site-specific recombinase, phage integrase family protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169495E Length = 379 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 64/381 (16%), Positives = 121/381 (31%), Gaps = 37/381 (9%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRY--KHPVTGKFHALGTNEAEAIAIATEANTR 58 MA RK N P K Y+RY P TGK A EA R Sbjct: 1 MAGTFRKRNCKCPP-ERRRCTCGAKWYYRYDITDPKTGKRKQKEVGGFRTKEEAQEAAVR 59 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS- 117 + + + +T +L + ++ NTY+Q+ V Sbjct: 60 IQSELLNG--------TYVEPTKLTVGEFLLDFVENTLKY----EVAPNTYEQRMTFVKN 107 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 ++ G ++ + + + + Q + ++L F +A + + N Sbjct: 108 HIQPNIGSLRLTDLTPNHVQKFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNMI--SRN 165 Query: 178 PALATKQP---RRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 P K+P R+ + ++E+ +K D A + LLAL +G R G++ + Sbjct: 166 PIPLVKKPSLSRKNTKMKTWTVEDQRKFLDYAKDGPKLYYVIFLLALTSGMRKGELLGLI 225 Query: 235 FSDIWDDHLHVIQEKTGSK-------IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVH 287 + D+ V ++T +P + + + + + Sbjct: 226 WDDVDTKKGIVSIKRTIVYAQRKLYLKDMPKTESAIRTIQLPEPTIKVMKQWKLECPANE 285 Query: 288 FFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD- 346 + + N+L +K A + T H R ++ Sbjct: 286 LNLLFPSPKTKGILYPNSLDKQLAKTIKGAGVP-----EITMHGLRHTFATTLLGSNVNP 340 Query: 347 --TQKLLGHKTQQQTDR-YHD 364 Q++LGH T + T Y Sbjct: 341 KIVQEMLGHATIKTTMDTYSH 361 >UniRef50_B9MQ70 Integrase family protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MQ70_ANATD Length = 325 Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 109/320 (34%), Gaps = 45/320 (14%) Query: 82 ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIAQLL 140 +T S WLD + +R TY + + ++ + G + + I + Sbjct: 11 LTFSQWLDIWMNQFMKI----KLRPTTYSSYIQLINKHIKPKLGHIQLQNLSPLAIQECY 66 Query: 141 DEYI-AAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEE 198 + + P+ + + ++ K+A G + N + A P+ + + LS E+ Sbjct: 67 NSLLLENLSPKTVKNIHVIIHSALKQAIKCGYI--NQNVSEAVALPKVERPEIKTLSSEQ 124 Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD--HLHVIQE-------- 248 A + A LL L TG R G++ +K+ DI D +HV + Sbjct: 125 VTTFLQAAQTDS--LYPAFLLELYTGLRRGELLGLKWDDIDFDNCTIHVKRSLVRVYDHN 182 Query: 249 -----------KTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 KT + IP+ + A L+++ + +S + Sbjct: 183 LKKTTLLLQPPKTKAGYRVIPIPDFVVA---ELKELYEEHQRIKLSQPNFNSLNLMFVTT 239 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGH 353 +G + F + A + H+ R L +Q + Q++LGH Sbjct: 240 QGTPIDPRNFERKFKQLLKKANLPNIR-----LHDLRHTVATLLLQQNVHPKIVQEILGH 294 Query: 354 KTQQQT-DRYHDDRGKGWSK 372 + T D Y + K Sbjct: 295 RDISTTLDIYSHVNIELKKK 314 >UniRef50_C2RY84 Prophage LambdaBa04, site-specific recombinase, phage integrase n=4 Tax=Bacillus cereus group RepID=C2RY84_BACCE Length = 378 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 70/373 (18%), Positives = 128/373 (34%), Gaps = 47/373 (12%) Query: 18 LYSRKVNKVYWRY---KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRI 74 + ++ K + + P+TGK + + A A L Q L Sbjct: 4 YFRKRGEKWSFTIDIGRDPLTGKRKQKTVSGFKTKKEAERACNELIHQFNTGSLV----- 58 Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDV 133 K +T S +L + +R T+ + V+ + G + + Sbjct: 59 ---DDKNLTLSEYLQEWLE----NTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKP 111 Query: 134 RDIAQLLDEYI-AAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT-R 191 + + I P+ + + VL ++A + + NP + PR + Sbjct: 112 LHGQRFVKSLIDEELSPKYIEYIFIVLKGALEDAVKWELLYK--NPFEHVEIPRPRKVVN 169 Query: 192 QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHVIQE- 248 S+EE K A + + LLAL TG R G++ +K+ ++ + + V + Sbjct: 170 NTWSIEETKTFLTYAKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKVSVTETL 229 Query: 249 ------------KT-GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 KT GSK I + L S + + AY + + Sbjct: 230 IYDELGFRFTEPKTSGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSR-- 287 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLG 352 E G + TLT F + A++ FH+ R L + G++ + + LG Sbjct: 288 EDGRPIYPRTLTTVFERFIKTAQVP-----KIRFHDLRHTHATLLLKLGINPKIVSERLG 342 Query: 353 HKTQQQT-DRYHD 364 H + + T D Y Sbjct: 343 HNSIKTTLDTYSH 355 >UniRef50_C1SPM2 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM2_9BACT Length = 397 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 65/366 (17%), Positives = 136/366 (37%), Gaps = 41/366 (11%) Query: 9 NVSVPNLYPLYSRKVNKVYW-RYKHPVTG-KFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + + + + K Y RY++ K L A + Sbjct: 29 DTELKGFALRVTGRPTKSYVIRYRNEEGRQKVMTLFRASNITADEARRKARTKLTEAQGG 88 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGM 125 + ++ K KA+ S + + Y + T K + + G Sbjct: 89 TDILKEK--QEKRKAMLFSEFAEIYLEHH----ARPNNSAGTVKTNESYLERLILPAFGN 142 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 + + ++ D A+L + + P A V ++L +F A+ + +P NP + T++ Sbjct: 143 RPLKSITPEDTAKLHHKIGKS-TPVQANRVHALLRKMFTLAETWRYIPQNTNPCVHTQKY 201 Query: 186 RRKITRQRLSLEEWKKI---FDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD-- 240 + ++ L+ +E K++ + + + A+ L + TG R +I +K+ +I + Sbjct: 202 KETPVQRFLTPDETKRLEDVLEKYEEKYYSAVLALRLLMYTGCRKEEILTLKWENIKNEL 261 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 + LH+ + KTG K +P+S + + +AY V+ + + E Sbjct: 262 NLLHIPKSKTGEKN-VPVSHEVLDMLE--------------NAYKVNEYVCFGKFENSRL 306 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQ 357 + L + + R A ++ H+ R G++ + KLLGHK Sbjct: 307 I---GLQKIWERLRKEAGLED-----VRIHDLRHSFASTAISGGINIEFISKLLGHKRIT 358 Query: 358 QTDRYH 363 T+ Y+ Sbjct: 359 TTEYYY 364 >UniRef50_B3T0I4 Putative Phage integrase family protein n=2 Tax=root RepID=B3T0I4_9ZZZZ Length = 422 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 66/392 (16%), Positives = 128/392 (32%), Gaps = 58/392 (14%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEA-EAIAIATEANTRLAEQRTR 65 + V K + K + G+ + +G + + + A R+ Sbjct: 31 DGEVSGFGCRCQVKSKV--YMLKTAIGGRQRWFTIGRHGSPWTVEKARTRAKRIIGNIAD 88 Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAG 124 DR + T + +RY K + ++ K K + + G Sbjct: 89 GKDPAKDR--DADKNKPTVAELCERYLEDYAKEHK----KPSSLKSDQKNIENHVLPLLG 142 Query: 125 MKLISAVDVRDIAQLLDEYIA-----------------AGRPRMAQVVRSVLIDVFKEAQ 167 + +++V DI + G +A ++L +F A+ Sbjct: 143 REFVASVTFADIDRFKRAVKDGKSSRERKPEHQGGPNVTGGKGVANRCLALLSKMFNLAE 202 Query: 168 HYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIA---DATHRYMGNAMLLALVTG 224 +G G NP + + LS +E + ++ ++ + Y A+ + + TG Sbjct: 203 RWGWCSVGSNPCRHVDRYPENKREKFLSDKELAALAEVLNKSESENPYAVAAIRMLIFTG 262 Query: 225 QRLGDISRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVS 282 RLG+I ++++ + + L + KTG K A+ LS DV+A + Sbjct: 263 ARLGEILHLEWAHVDMERAMLLLPDPKTGQK-AVFLSAPA-------LDVLANLPHMKNN 314 Query: 283 AYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKE 342 +++ + S L + + R A ++ H+ R + Sbjct: 315 PHVICGEKDGS--------HLVNLQKPWGRIRKRAGLED-----VRLHDLRHSFASVAAS 361 Query: 343 QGLD---TQKLLGHKTQQQTDRYHDDRGKGWS 371 GL KLLGH T RY Sbjct: 362 GGLSLPMIGKLLGHTQAATTARYAHLAADPLK 393 >UniRef50_D2U4J7 Phage integrase n=5 Tax=Gammaproteobacteria RepID=D2U4J7_9ENTR Length = 392 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 95/405 (23%), Positives = 165/405 (40%), Gaps = 52/405 (12%) Query: 1 MAARPRKNN-VSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 MAARPRK ++P+ L+ K +Y + GK +G ++A AIAIA E N + Sbjct: 1 MAARPRKREYRNLPDF--LFFDKSKNIYRLV--LINGKKKNIGNDKALAIAIAREYNNIM 56 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 I ++ G+ + S ++ + +K + T + + Sbjct: 57 RPLLNISINSLIQESGGKFGEGLPFSEHVEH---LFKRIVKDETPSITTLADWKNDIERV 113 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 +E L + + + + + +++Y + S L +F A + NPA Sbjct: 114 KEFFINILCTEISLEHVNEYINKYHGNASANVQNRKVSFLKKLFSYAIDESLMLD--NPA 171 Query: 180 L-ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS-- 236 ++ K R RLS +++KKI + A+ ++ AM LAL T Q ++SR++++ Sbjct: 172 ERKKRRRTDKKVRHRLSFDDFKKIRNAAE---PWLRTAMDLALQTTQARLEVSRIRYNIK 228 Query: 237 --------DIWDD------------HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 IW H +Q+K S IAIP+ + L++++ Sbjct: 229 SPQEGICGCIWYKEPQNNIYGMLYIHRQKVQDKEASHIAIPIGAK-------LKEIIDNS 281 Query: 277 RDYAVSAYLVHFFRSTSQAE------RGAQVKANTLTMNFSKARDLARIDWG--EGSPAT 328 RD S Y+VH ++ Q+ + L+ FS RD + T Sbjct: 282 RDSIASPYVVHRLPIKRPSKISSEIHHPTQIAPDYLSRAFSNLRDQLGVTANLTLAERPT 341 Query: 329 FHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKV 373 FHE R+L+ L+K GLD Q + H + T Y + W +V Sbjct: 342 FHEIRALAAHLFKINGLDPQARMAHSDAKSTKIYTQNHV-DWVEV 385 >UniRef50_A7IMK8 Integrase family protein n=39 Tax=Bacteria RepID=A7IMK8_XANP2 Length = 467 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 60/375 (16%), Positives = 113/375 (30%), Gaps = 40/375 (10%) Query: 8 NNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHA--LGTNEAEAIAIATEANTRLAEQRTR 65 + ++P + K + G+ +G + A + R Sbjct: 24 RDTTIPGFLVKITPTGRKTFMIAYVANNGQRRKPAIGRYGEITVEQARRIAQDWLAEVRR 83 Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKP-VSLLRERAG 124 ++R A+ +A T DR+ + + +T K + G Sbjct: 84 GADPSAERTAS--RQAPTVKELFDRFITDYSES----RNKPSTVKSNRGFGKRHILPALG 137 Query: 125 MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 + V DIA L+ + P A V S + +F A+ +G P G NP + Sbjct: 138 HMKVPDVTRSDIANLMKKMSK--SPVNANRVLSAVRKMFNMAEVWGMRPDGTNPCRHIPK 195 Query: 185 PRRKITRQRLSLEEWKKIFDIADA------THRYMGNAMLLALVTGQRLGDISRMKFSDI 238 + + ++ E +K+F+ D H ++ A+ L R+ +I +++S + Sbjct: 196 FPERGKTRLITDAEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEFAARMSEIIELEWSWV 255 Query: 239 WDDHLHV--IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 D+ V KTG +N + S ++ Sbjct: 256 DFDNRRVVWPDSKTG--------GMSKPMNAEALRLFETAPLLEDSPFVCPSVFDPK--- 304 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGH 353 + T + + A + H R S G+ + L H Sbjct: 305 --KAMSPYTYYQGWKRILKRAGLPH-----VGTHGIRHRSATDIANSGVPVKVGMALTAH 357 Query: 354 KTQQQTDRYHDDRGK 368 KT RY Sbjct: 358 KTVTMFMRYVHTEDD 372 >UniRef50_C5SDM2 Integrase family protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SDM2_CHRVI Length = 398 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 65/365 (17%), Positives = 119/365 (32%), Gaps = 38/365 (10%) Query: 9 NVSVPNLYPLYSRKVNKVYWR-YKHPVTGKFHALGTNEAEAIAIAT-EANTRLAEQRTRQ 66 + P K + Y+ + +GT + A +A LA+ T+ Sbjct: 25 DDDPPGFGLRIYPSGRKAFVLSYRSQGRKRLMTIGTYGVLTLDQARIQARAELAKVETQG 84 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMK 126 ++ R ++G+ T Y + G + + + + L G Sbjct: 85 ADPLAVRQRQAQGE--TFRDLCQTYME------RHGQAKKSGTDDQRRIDRHLLPLWGSL 136 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG-YNPALATKQP 185 + AV D+A L + A P A V ++L +F A+ +G VP G NPA + Sbjct: 137 KVPAVTRADVAALHSKIGKAH-PYEANRVLALLSKMFDLARRWGFVPEGHPNPARDIDRF 195 Query: 186 RRKITRQRLSLEEWKKIFDIADATHRYMGNA-MLLALVTGQRLGDISRMKFSDIWDDH-- 242 + + ++ EE ++ + + L L+TG R ++ R ++ D+ Sbjct: 196 KEAKRDRWVTPEELPRLAQAINEEPNQSARFGLWLYLLTGARKSELLRARWDDVDWTRAE 255 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 L + K G IPLS A+ + V H Sbjct: 256 LRIPDTKAGRVHYIPLSAAALALLREIPRVAGNPHILPGKLDGAHLV------------- 302 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQT 359 + + + R A ++ H+ R + G ++L H Q T Sbjct: 303 --NINKPWDRVRRAAGVEDVRV-----HDLRRTVGSWLAQAGNSLHLIGRVLNHSNQSTT 355 Query: 360 DRYHD 364 Y Sbjct: 356 AIYAR 360 >UniRef50_D1S145 DNA integration/recombination/invertion protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1S145_SEROD Length = 287 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 120/296 (40%), Positives = 166/296 (56%), Gaps = 12/296 (4%) Query: 81 AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLL 140 I T TW +RY+ + D R G I T + + + G + +SA+ V DIA Sbjct: 3 DILTRTWAERYEKLMDARCHHGYITEKTKSDYTRMIRRVLNFWGDETLSAITVADIAD-K 61 Query: 141 DEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWK 200 +IAA P A+ R L D F+EAQ G +P GYNPAL T++P +T RL+L EW Sbjct: 62 IHHIAAHHPHSARRFRLNLCDFFQEAQRDGLIPLGYNPALVTREPFTPVTTNRLTLSEWS 121 Query: 201 KIFDIADA-THRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLS 259 IF A++ RY AMLLALV QR GDI + ++D HLH+ Q+KTG IA+PL+ Sbjct: 122 AIFCRAESVAPRYFVIAMLLALVAAQRRGDIVSFHSTHVFDGHLHIRQQKTGEMIALPLN 181 Query: 260 LRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARI 319 LRLNA++ +L DV+A C + Q G V +L+ F + RD Sbjct: 182 LRLNALDITLADVIAMCPPSGL----------LLQQSNGKPVNTWSLSYWFKRCRDETIP 231 Query: 320 DWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 G P +F EQRSLSERLY+E+G+DT+ LLGH+ Q TD+Y+ RG+ + ++ L Sbjct: 232 RPKVGRPPSFREQRSLSERLYREEGIDTRTLLGHRHQSMTDQYNSLRGRDYRRLVL 287 >UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003841F3 Length = 394 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 63/373 (16%), Positives = 118/373 (31%), Gaps = 38/373 (10%) Query: 9 NVSVPNLYPLYSRKVNKVYWR-YKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQI 67 + V + + K + Y+ + +G+ ++A A L + Sbjct: 25 DADVKGFGLRVTNRGAKSFILDYRIGGRQRRITIGSYPDWSVAAARTEAGNLKREVDLGN 84 Query: 68 LAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKL 127 + +R A A T DRY+ R + T + L+ G Sbjct: 85 DPMGERHA--DRAAPTMRDLWDRYKRDHLPRKAARSQADETMMWE----KLVLPTLGKHK 138 Query: 128 ISAVDVRDIAQLLDEY-IAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 + V DI L + ++ G P A V V+ F A + + NPA + Sbjct: 139 VGDVTHTDIEALHRDITVSRGTPVRANRVIEVVRRAFNLAIRWEWIEK--NPASGQLRNP 196 Query: 187 RKITRQRLSLEEWKKIFDIADATHRYM-GNAMLLALVTGQRLGDISRMKFS--DIWDDHL 243 + ++ LS EE ++ A H + +A+ + ++TG R ++ + D+ Sbjct: 197 EEKRQRYLSPEELSRLSAALTAHHEPVSADAIRMLMLTGARKSEVLGATWEMFDLDAGVW 256 Query: 244 HVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 K + +P+S ++ R R+ A Y+ + Sbjct: 257 TKPSAHTKQRKEHRVPVSANALT-------LLKRIRETAEGPYVFPGKGG------DQPL 303 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQ 358 + +++ A I H+ R L G +LGH Q Sbjct: 304 TD--VKRSWAAVCKAADITGAR-----IHDLRHSFASLLVSGGASLPIIGAMLGHTQVQT 356 Query: 359 TDRYHDDRGKGWS 371 T RY + Sbjct: 357 TQRYAHLYDEPLR 369 >UniRef50_A1WTV4 Phage integrase family protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTV4_HALHL Length = 379 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 62/375 (16%), Positives = 126/375 (33%), Gaps = 41/375 (10%) Query: 9 NVSVPNLYPLYSRKVNKVY-WRYK-HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + P L + Y +RY+ H + L ++ A A Sbjct: 23 DRKAPGLIVEVRPTGSATYFYRYRNHAGLTRSCKLARFREISLKDARSLAREKASIVASG 82 Query: 67 ILAISDRIATSKGKAITTSTWLDR-YQAIQDDRLKSGDIRLNTYKQKAKPVSLL-RERAG 124 ++ ++ + T + + Y ++K ++ G Sbjct: 83 HDPQEEK--NTRRASPTLKEYAEECYLPHAKSY-------KRSWKTDEIMLNHHALPTLG 133 Query: 125 MKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 K +S ++ + ++++ + G P V +++ +FK A NP K Sbjct: 134 TKKMSDINRNQVEAIMNDMKSRGYAPSTVDRVLTLISYMFKVAMDNEIPGVVSNPTEKIK 193 Query: 184 QPRRKIT-RQRLSLEEWKKIFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKFSDIW-D 240 +P L+ EE ++ + A H ++ + + +A++TG R +I +F D D Sbjct: 194 RPVIDNKIENYLTREEVNRMLEAARRRNHPHIYSIIRMAVLTGARKAEILSARFEDFDLD 253 Query: 241 DHLH-VIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 + + + + K GS+ I L+ + + L + L + G Sbjct: 254 NKIWNIPKGKNGSRKVI-LAEKAVQMVKELPK-------QEGTDLLFP--------QPGT 297 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQ 356 + F + ID FH+ R L + G++ ++LLGH Sbjct: 298 DKPYQCIQKPFKAVLRDSGID----ESVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQI 353 Query: 357 QQTDRYHDDRGKGWS 371 T RY +G Sbjct: 354 TTTMRYAHLSAQGLR 368 >UniRef50_A5L0D7 Site-specific recombinase, phage integrase family protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L0D7_9GAMM Length = 375 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 61/367 (16%), Positives = 134/367 (36%), Gaps = 44/367 (11%) Query: 7 KNNVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTR 65 + V LY +V++ R++H + H LG+ A + + R A + Sbjct: 23 YYDTKVSTLYLRVYPSGRRVFFVRFQHNGLRRNHKLGS--------ALDYSLRQARREAL 74 Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAG 124 Q++ +IT + + + NT K+ + G Sbjct: 75 QVVQQVRSPKMETLPSITLQAFGQEFFKRY-----PRHWKPNTLKKNESAFRLQIAPYLG 129 Query: 125 MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 + + ++ D+ Q + + A +L + ++ + + P NP K+ Sbjct: 130 DREVQSIVRSDVEQWFTQL--SHVKGSANQALVLLSVMMQQCEAWEYRPKNTNPCRGFKR 187 Query: 185 PRRKITRQRLSLEEWKKIF---DIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 + + LS +E ++++ D + + + L + TG R ++ +++ + Sbjct: 188 YKAGEVERYLSKDELRQLWRVLDTLEGDNPAKVMIIRLLIYTGCRSSEVRTLQWKEYRGG 247 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 H H++ KTG+K + L ++ A + + + S YL +T + Sbjct: 248 HWHLLDSKTGAK-TVYLCSQVRAYLDAWQ---------SESHYLFPAPCNT------KPI 291 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQ 358 N L + + +AR LA + H+ R + + ++ +LLGH + Sbjct: 292 STNQLGIFWRQARQLAGL-----EGVRLHDLRHTYASIAIQSKVNLIVLSRLLGHAEAET 346 Query: 359 TDRYHDD 365 T +Y Sbjct: 347 TLKYAHL 353 >UniRef50_C8VWS4 Integrase family protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWS4_DESAS Length = 381 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 63/381 (16%), Positives = 117/381 (30%), Gaps = 60/381 (15%) Query: 19 YSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 ++ Y GK + + A E Q + ++ Sbjct: 5 IVKRGKTYSIVYDINQGGKRKQKWESGFKTKKEA--------EAILAQRINEIEKGTYIN 56 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIA 137 K T +L R+ D+ +T ++ + L G ++ + I Sbjct: 57 PKKDTLEDYLIRWFDTHK-----ADLSPSTARRYEGIIKQHLIPSLGNIPLAKLQPLQIQ 111 Query: 138 QLLDEYIAAG------------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 + L + + G VL +A + + NPA K P Sbjct: 112 EFLSKELEGGRQDNKKTVGAGLSAASVNYEYRVLHKALNQAVDWQLI--SRNPADLVKVP 169 Query: 186 RRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH-- 242 + + LS ++ ++ + + Y+ LA+ TG RLG++ + DI + Sbjct: 170 KPEKKDMVVLSEQDIARLLNEIKDNYLYIPTF--LAIYTGMRLGEVLGSTWKDIDLNRGI 227 Query: 243 LHVIQE--------------KT-GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVH 287 L V Q KT SK I +S + + + + A S + + Sbjct: 228 LSVRQASCQVKADDPEFKAPKTAKSKRNIDISQTVVKTLREHKKTQTKWKLVAGSNWQDN 287 Query: 288 FFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD- 346 + G + +L+ F + + +FH R L + G+ Sbjct: 288 NL--VCALQDGRPINPPSLSSYFRRVASRIGL------FVSFHALRHTHASLLLKAGIQP 339 Query: 347 --TQKLLGHKTQQQTD-RYHD 364 Q+ LGH T T Y Sbjct: 340 KIVQERLGHSTIAVTMDIYSH 360 >UniRef50_C3L682 Prophage LambdaBa04, site-specific recombinase, phage integrase family n=10 Tax=Bacillus anthracis RepID=C3L682_BACAC Length = 374 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 68/373 (18%), Positives = 125/373 (33%), Gaps = 47/373 (12%) Query: 18 LYSRKVNKVYWRY---KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRI 74 + ++ K + K P+TGK + + A A L Q L Sbjct: 4 YFRKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEAERACNELIHQFNTGSLV----- 58 Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDV 133 K T S +L + +R T+ + ++ + G + + Sbjct: 59 ---DDKNFTLSEYLQEWLE----NTAKQRVRETTFTNYKRAINSRIIPVLGSHKLKDLKP 111 Query: 134 RDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT-R 191 + + I G P + + VL ++A + + NP + PR + Sbjct: 112 LHGQRFVKSLIDEGLSPAYIEYIFIVLKGSLEDAVRWELLFK--NPFQHVEIPRPRKVVN 169 Query: 192 QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD-------------- 237 S+EE KK + + + LLAL TG R G+I +K+ + Sbjct: 170 STWSIEETKKFLNRTKFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETL 229 Query: 238 -IWDDHLHVIQEKT-GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 ++ + KT GSK I + L S + + +Y + Sbjct: 230 IYDENGFRFTEPKTHGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAK-- 287 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLG 352 E G + T+T F++ A + FH+ R + + G++ + + LG Sbjct: 288 ETGQPILPRTMTTTFNQFIKKADVPQIR-----FHDLRHTHATILLKLGINPKIVSERLG 342 Query: 353 HKTQQQT-DRYHD 364 H + + T D Y Sbjct: 343 HSSIKTTLDTYSH 355 >UniRef50_Q1K3L6 Phage integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3L6_DESAC Length = 397 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 119/361 (32%), Gaps = 37/361 (10%) Query: 22 KVNKVYWRYKHPVTGKF--HALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 K WR+K GK +G ++ A + I R Sbjct: 45 KNGSRSWRFKQKFRGKRLFITIGPYPLFSLQEAIDKTRHFKRLIADGIDP---RQEQQPQ 101 Query: 80 KAITTSTWLDR-YQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 +T + ++++ + K+ + N + + G ++ + R++ Sbjct: 102 SQLTLAQFVEQDFLPYARKHYKTFHNQQNMLD------KRIIKTFGATPLADISKREVML 155 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLE 197 + S+L +FK A Y + NP K+ + +R R L + Sbjct: 156 FHQQVCDETSGTTGNRHLSLLSSIFKLALEYDLLEK--NPCRGIKKAKENRSRDRFLQED 213 Query: 198 EWKKIFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHVIQEKTGSKI 254 E+ + + + A+ L + G R ++ +++ D+ D HLH+ K G Sbjct: 214 EYTRFIQVLQTKLDQPSACAIFLLIALGMRKSELLSLRWEDVSLADRHLHLRDTKNGESR 273 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 + L+ + + ++ + A + ++ S+ + F+ Sbjct: 274 YVALNSVSHGLLTKMK-----QKRKASNPWVFPSRTSSESG------HLQDVRRTFATVC 322 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTDRYHDDRGKGWS 371 ++I H+ R G+D K+LGHK+ + T Y + Sbjct: 323 RESKIT-----GLRIHDLRRSHASHLLNAGVDISIVGKILGHKSLKSTQIYAKVATSSLA 377 Query: 372 K 372 + Sbjct: 378 R 378 >UniRef50_B7DTD1 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTD1_9BACL Length = 379 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 68/373 (18%), Positives = 122/373 (32%), Gaps = 49/373 (13%) Query: 19 YSRKVNKVYWRYK--HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 ++ NK + GK + A +A ++ + Sbjct: 5 VRKRGNKWCFVIDVGRDENGKRKQKWFSGYATKKEAEKAMAAKLQEIVSGVYVAE----- 59 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRD 135 T T+L + K +R +TY+ V + G +S + + Sbjct: 60 ---NNDTVETYLRNWLED-----KRSQVRPSTYRGYEWLVRVHIIPHLGGIELSDLRPQH 111 Query: 136 IAQLLDEYIAAGRP---RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 + L + + +P R + +L + A +G V N A A PR ++ R Sbjct: 112 LQALYRKLQSLDKPLSNRTILHIHLLLHEALDRAVKWGMV--ARNVADAVDPPRPEVRRS 169 Query: 193 R-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKT- 250 + E+ + + A +LA++TG R G+I +++S+I D V +T Sbjct: 170 IVWTPEDVRAFLSANEEAEARYYAAFVLAVMTGMRKGEILGLRWSEIDWDSAVVRINQTL 229 Query: 251 ---------------GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 S+ ++ LS + A+ R + Y H Sbjct: 230 TWTKQGPILQEPKTDRSRRSVALSPETIVALRRHHALQAQERLLYGTEYKDHDLVFARP- 288 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLG 352 G + TL + +A A + FH+ R L QG+ + + LG Sbjct: 289 -NGEPLHPRTLDNAWYRALKRANVPRIR-----FHDLRHTHASLLLAQGVHPKIVSERLG 342 Query: 353 HKTQQQT-DRYHD 364 H T T D Y Sbjct: 343 HSTINITLDTYSH 355 >UniRef50_B7RVJ7 Site-specific recombinase, phage integrase family n=4 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=B7RVJ7_9GAMM Length = 392 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 64/382 (16%), Positives = 128/382 (33%), Gaps = 49/382 (12%) Query: 9 NVSVPNL---YPLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEANTRLAEQR 63 + ++P L + + RYK GK + +G + ++A A + L Q Sbjct: 27 DTALPGLLWEQRAVNHEWGSYRLRYK-SEGGKTAYVTIGRSCDISLAGARKRARHLKAQI 85 Query: 64 TRQILAISDRIATSKGKAITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 ++ A +K + +T + + D Y + + + Sbjct: 86 ELGADPQAE--AKAKKQVLTWNAFFTDHYLPHVKQH------KRSWKNDLEMHNLRISAF 137 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 G K ++ + ++ + + P A ++ A + + NP Sbjct: 138 IGNKRLNKITRSEVQRFHASLVEEDLSPATADHHLKLIRQALNLAVDWELLE--ANPVAK 195 Query: 182 TKQPRRKIT-RQRLSLEEWKKIFDIAD-ATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 K + + LS EE +++ + ++R + N +L L TG R+ + ++SDI Sbjct: 196 VKLFNQDNQVERYLSDEEMQRLLKVLKTDSNRVVCNVILFLLSTGARVSEALSAEWSDID 255 Query: 240 D-DHLHVIQ---EKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + + VIQ K+ K ++PL+ V+ L R Sbjct: 256 RKNRVWVIQATNSKSKKKRSVPLNDVAIG-------VLDALDTEGKHDRLFVGKRGPLT- 307 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLG 352 T+ + + R A ++ H+ R L G + Q+ LG Sbjct: 308 ---------TINKVWFRIRSEAGLEDYR-----IHDLRHSYASLLVNAGHSLFEVQQALG 353 Query: 353 HKTQQQTDRYHDDRGKGWSKVA 374 H + T RY + + A Sbjct: 354 HSDPKVTMRYAHLSKESLQRAA 375 >UniRef50_C4SF49 Integrase n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SF49_YERMO Length = 226 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 133/224 (59%), Gaps = 6/224 (2%) Query: 152 AQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHR 211 A +RSVL DVF+EA G + NP AT+ P K+ R+RL + KI + A Sbjct: 7 ALNLRSVLSDVFREAIADGLI--SSNPVEATRTPSPKVKRERLDYTAFCKIHEAASQQQN 64 Query: 212 YMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRD 271 ++ +M LAL+TGQR D+ ++K SD+ D L VIQ KTG++IAI LSLRL +N ++ D Sbjct: 65 WVQLSMALALITGQRRDDVRQLKRSDVHDGRLWVIQGKTGNQIAISLSLRLEIMNATVGD 124 Query: 272 VVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHE 331 ++ +C + + S YL+ +S E G + A++LT F KA + + + SP +FHE Sbjct: 125 IIEKCLNNSKSEYLISSSNKSSGREPG-ALNADSLTKAFVKALKATDLVY-KISPPSFHE 182 Query: 332 QRSLSERLY-KEQGLD-TQKLLGHKTQQQTDRYHDDRGKGWSKV 373 RSL+ RLY E G + QKLLGHK+ + T+ Y D R W ++ Sbjct: 183 IRSLASRLYEAEYGKEFAQKLLGHKSMKMTNVYLDSRKNEWVEI 226 >UniRef50_A8UWI5 Phage integrase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWI5_9AQUI Length = 369 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 66/356 (18%), Positives = 132/356 (37%), Gaps = 36/356 (10%) Query: 19 YSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 +K + Y K+ GT + EA E+ + LA + ++ Sbjct: 6 IQKKGRRYYVVIPIGHKRKWFPAGTTKREA------------EKVLAEKLAELNAGSSVL 53 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIA 137 + S + + + + G ++ +T+++ + R G K +S + + Sbjct: 54 PPEVRFSFFCEEWLSKYAK----GSVKPSTFRRYEGIIRNHFMPRFGDKKLSRITTGMLQ 109 Query: 138 QLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSL 196 + E ++ P +L ++FK AQ +G + +NPA ++PRR+ L+ Sbjct: 110 GYVAERLSQVSPTTVLQEVVLLKEMFKHAQSWGYIK--HNPAQNLQRPRREKKEIDILTP 167 Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD--DHLHVIQEKTGSKI 254 EE + + + TH + A L A++TG R G++ +K+ DI ++V + + Sbjct: 168 EEVEFLL---ENTHEHYRVAFLTAVMTGLRAGELWGLKWDDIDWHSKQIYVRRTLWNGEF 224 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANT-LTMNFSKA 313 P S + DV+ + + + +G + + F A Sbjct: 225 HTPKSRHSIGKVD-MPDVLVEELKLWEIRCPPNKYNLVFPSPKGEPSEHQNVVNRYFKPA 283 Query: 314 RDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQT-DRYHDD 365 A + +FH R + + G + Q+ LGH + T D Y Sbjct: 284 LRRAGLRV-----VSFHSLRHTNASIRIRAGQNIKYIQRQLGHASINTTLDIYGHL 334 >UniRef50_A4XMV7 Phage integrase family protein n=2 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMV7_CALS8 Length = 332 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 105/327 (32%), Gaps = 22/327 (6%) Query: 47 EAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRL 106 ++ + N +L I + + +IT ++D + S ++ Sbjct: 1 MSVEQLNQLNIEELIITLENVLKILKQYSKVSNSSITFKEFVDYWFEAY----ASTAVKP 56 Query: 107 NTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEA 166 +T K+ + + G K ++ V DI + + +L ++FK A Sbjct: 57 STQKRYRQLLKPALRAIGNKPLNKVKPLDIQNIYIALAGTQSNCTILKLHRLLHEIFKHA 116 Query: 167 QHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQ 225 Q + + NP P + +E K+ +I Y + AL TG Sbjct: 117 QMWEYISD--NPVKKVVPPTPEKKVFDVWDVETAKRFLEIIKDEPIYYPALI--ALHTGM 172 Query: 226 RLGDISRMKFSDIWDDHLHVIQEKTGSKIA----IPLSLRLNAINWSLRDVVARCRDYAV 281 R G+I +K+ D+ + + K+ K + L + + + D++ + Sbjct: 173 RAGEILSLKWCDVNFETRVISIVKSERKNRGLKTVNLKTKTSKRAVYMNDILYKELKNLY 232 Query: 282 SAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYK 341 + N L+ F K FH+ R L Sbjct: 233 EITKPKPDDFVCPRLPTGNLTVNYLSRKFKKLVKKHNFPLIR-----FHDLRHTFATLML 287 Query: 342 EQGLD---TQKLLGHKTQQQTDR-YHD 364 G++ ++LGH + T Y Sbjct: 288 SLGVNTKIVAEILGHSDIKLTADTYSH 314 >UniRef50_A5CFJ0 Phage-related integrase n=19 Tax=Orientia tsutsugamushi RepID=A5CFJ0_ORITB Length = 442 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 59/357 (16%), Positives = 125/357 (35%), Gaps = 57/357 (15%) Query: 38 FHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIA------------TSKGKAITTS 85 +G +A A + +L + I + +R +T Sbjct: 63 KIKIGDFPDLTVAEARKKIQQLKRDIAKGINPMDERRKINKERREKREKRLKLKNELTFR 122 Query: 86 TWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIA 145 ++Y + ++K+ ++ V + K IS + DI ++ DE A Sbjct: 123 QVHEKYTEYSSHHHR-------SWKRTSERVKIYAAFLYNKKISEITKEDIQKIFDEITA 175 Query: 146 AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI 205 A + L +F +A +G + NP K+ +++ + ++ EE +++ + Sbjct: 176 RKHYVTANNILMNLSPIFNKAIEWGLI--DKNPVHGIKRHKQESRSRYVTNEEMERLMKV 233 Query: 206 A------------DATHRYMGNAMLLALVTGQRLGDISRMKFSDI----WDDHLHVIQEK 249 + + +AL T R G+I M++ +I + + K Sbjct: 234 LVEKENSQLTEEQKQSKISETLFLFIALFTAARSGNILAMRWDEISLSEKIWCIPKTKSK 293 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 G ++ I L+ +L A V+ + + S +++ + S+ + ++T+ Sbjct: 294 NGKQLYIGLADKLIA-------VLQNRKLCSKSEWILPSVKDNSKH-----ISSSTIHRA 341 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGHKTQQQTDRYH 363 ++K R A I T H+ R G ++LGH T Y Sbjct: 342 WAKIRKKAGIPN-----VTIHDLRRTFATWMINNGETVDTISQILGHSNTNTTKIYI 393 >UniRef50_B4BIA4 Integrase family protein n=2 Tax=Geobacillus RepID=B4BIA4_9BACI Length = 384 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 66/382 (17%), Positives = 126/382 (32%), Gaps = 50/382 (13%) Query: 14 NLYPLYSRKVNKVYWRY---KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAI 70 N L K Y+R K PVTGK A + ++ Q Sbjct: 3 NFDKLIKEKKKGFYFRIDVGKDPVTGKRKQASFGPFRTKTEAKKELLKIKNQVDDG---- 58 Query: 71 SDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLIS 129 + K S +++R+ R + + T K + + + + K I+ Sbjct: 59 ----SYFKESTEDFSMFMERWFNTSYKR----TVEITTAKSREYVIRNHIMKYFQHKKIN 110 Query: 130 AVDVRDIAQLL-DEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRK 188 + DI D+ + + ++L F +A + V NP K P+ K Sbjct: 111 EITTFDIDSFYVDKLDTGYSGAYIRQMHNLLNQAFDQAVKWSLVK--VNPVKNAKPPKVK 168 Query: 189 ITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD------ 241 + +++E + ++ + M LLA+ TG R G++ +K+ D+ + Sbjct: 169 SEEKITWTVDEVNRFLNLIKDSS--MEIPYLLAIFTGMRRGEVLGLKWDDVDFENKKIRI 226 Query: 242 ----------HLHVIQEKTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFR 290 L + KT K I +S + + + ++ Y + Sbjct: 227 KRSLCFVSGKGLIFKEPKTKKSKRQISISQHVVNVLKKHKQKQEFQKEKLGVQYQDNNL- 285 Query: 291 STSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ-- 348 + G + L F + + A + +FH+ R + +QG + + Sbjct: 286 -IVCTDDGKPLDPRNLLRQFYRLIEEANVP-----RISFHDLRHTHATILMQQGENPKVV 339 Query: 349 -KLLGHKTQQQT-DRYHDDRGK 368 + LGH T D Y Sbjct: 340 SERLGHSRVGITLDLYSHVSDD 361 >UniRef50_C3MAV8 DNA integration/recombination/invertion protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAV8_RHISN Length = 429 Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 74/394 (18%), Positives = 145/394 (36%), Gaps = 24/394 (6%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 ++R + ++ LY + K + RY+H + LG A +++ A E + Sbjct: 19 SSRREIPDGALQGLYLIVQTTGVKSWAVRYRHAGKPRKMTLGGFPAISLSDAREEARKAL 78 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-L 119 + +++ + + R + R + ++ + V L Sbjct: 79 RMVSEGRDPATEKAEQEPKRPAHM-DLMPALLDEFVTRHVAVKNRPSYVRESKRIVEKNL 137 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + + KL+ V RD+ +LLDE + G P MA VR++L F A V +P Sbjct: 138 KPKWKQKLVKTVTKRDVLKLLDEIVDRGSPIMANRVRALLSKFFAWAMERDIV--DASPV 195 Query: 180 LATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 ++ K P + TR R L+ EE + ++ A+ G + L L+T QR ++S + ++ Sbjct: 196 VSIKAPSEEKTRDRILTDEEIRFLWLAAEKLAYPFGPVVKLLLLTAQRRTEVSDALWDEL 255 Query: 239 WDDH------LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 + + V + K + +PL+ I L + + A YL Sbjct: 256 ELEGNNQLWVISVDRAKNKKEHFVPLTASALEIIEGLPKIKPAEDEKAKPIYLFT-TTGK 314 Query: 293 SQAERGAQVKANTLTMNFSKARDLA-----RIDWGEGSPATFHEQRSLSERLYKEQGLD- 346 + ++ K + AR A + P T+H+ R + + Sbjct: 315 TPVSGFSKAKTQLDGEMLAIARKEAEERGEDPEGISIEPWTYHDLRRTAASGMARLSVPV 374 Query: 347 --TQKLLGHKTQQ---QTDRYHDDRGKGWSKVAL 375 + +L H++ Y+ + AL Sbjct: 375 HIVEAVLNHRSGSIKGVAAVYNRYDYAEEKRAAL 408 >UniRef50_Q2NBN0 Site-specific recombinase, phage integrase family protein n=3 Tax=Erythrobacter RepID=Q2NBN0_ERYLH Length = 398 Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 59/372 (15%), Positives = 118/372 (31%), Gaps = 38/372 (10%) Query: 14 NLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD 72 + VY + + + +G A R+ ++ Sbjct: 42 GFGIRHYPSGRNVYIVQTRMAGRMRTVTIGPTSVLTRYQAQMVARRVIAYAQVGRDPATE 101 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 R A + + ++ Y R K+ + T+ + L + I ++ Sbjct: 102 R--QRIRSAPSFADFVTEYWDRWAPRWKASTLE--THTGYRR--RYLDDAFVGVYIDELN 155 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 + + P + +L + +A+ +G NP + + R++ + Sbjct: 156 EGHVTSWFADLNNLTGPGASNRTFEILKHMLNKAEDWGYRLENTNPCRSVRPNRKRQCER 215 Query: 193 RLSLEEWKKIFDIA-------DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV 245 L+ +E ++ D T + G A+ L L+TG R +I ++++DI + LH+ Sbjct: 216 FLTNDELARLGAELTNLRASEDRTKQCSGAAITLLLLTGCRKSEILTLEWTDIKGNRLHL 275 Query: 246 IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANT 305 KTG R + + R+V+A + Y +R Sbjct: 276 RDSKTG--------PRTVWLGSAAREVIAALPRFERIPYPFWNYRYRKP--------LRC 319 Query: 306 LTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRY 362 + + + RD A + H+ R +LLGH Q T RY Sbjct: 320 VNGFWRRLRDEAGLPD-----VRIHDLRHTFASHAAMNKETLPMIGRLLGHANVQTTARY 374 Query: 363 HDDRGKGWSKVA 374 + A Sbjct: 375 AHFDDGHLLEAA 386 >UniRef50_D2LJU9 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJU9_RHOVA Length = 393 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 70/381 (18%), Positives = 129/381 (33%), Gaps = 45/381 (11%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEA-EAIAIATEANTRLAEQRTR 65 + V + V + K V G+ + +G + + A RL + Sbjct: 22 DGQVKGFAAKANA-NGSVSFVLKTRVNGRQRWVTIGKFGSPWTVETARREALRLLGEAAS 80 Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAG 124 +++ A + K + D++ AI ++ T + + L+ G Sbjct: 81 GNDIGAEKQA-KRAKGLLFGHVADQFIAIHFP-----KLKPRTRESYGTIIRLHLKPAFG 134 Query: 125 MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 I+ + +A + PR A SVL + A+ G P NP ++ Sbjct: 135 ATPIADIRKTSVATFHARHAE--TPRNANHALSVLSKIMNWAEEQGLRPAESNPCRNIRK 192 Query: 185 PRRKITRQRLSLEEWKKIFDIA------DATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 R + LS +E ++ Y+ A+ L L+TG RL +I ++++ + Sbjct: 193 YRETKRERYLSPDELARLGAALAAAEDDKTVDPYIIAAIRLLLLTGARLSEILTLRWTYV 252 Query: 239 WDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 L++ KTG+K+ IPL+ + +L S V R Q Sbjct: 253 DTYRRILNLPDSKTGAKV-IPLNQAALDLLGTLP--------RLNSNPFVLVGRVEGQ-- 301 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGH 353 L + + R A +D H+ R + G ++LGH Sbjct: 302 -----HLVNLQKPWRRIRKEAGLDD-----VRIHDLRHSFASVSVGLGGSLPVIGRVLGH 351 Query: 354 KTQQQTDRYHDDRGKGWSKVA 374 T RY K +++ Sbjct: 352 SQPATTARYAHVADKVAAELV 372 >UniRef50_C8VWK7 Integrase family protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWK7_DESAS Length = 389 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 61/381 (16%), Positives = 107/381 (28%), Gaps = 59/381 (15%) Query: 22 KVNKVYWRYKHPV----TGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 K WR P GK EA + R A++ A + Sbjct: 7 SRGKNKWRLNVPDGTGPDGKRIT-HRKVVEATSE------REAKKLLDVFSAEVQKGQYI 59 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDI 136 +T + ++ D+ T + + ++ + G I + I Sbjct: 60 APSKLTFKEFSQKWLE------SKKDLAPKTLYRYKEILNSRILPAMGHLKIEDIKPFHI 113 Query: 137 AQLLDEYIAAG----------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 Q G P +L ++F A + + NPAL + P+ Sbjct: 114 MQFYGNLQEPGIREDGKEGTLSPATVLYHHRLLTNIFNAAVKWQIILT--NPALRVEAPK 171 Query: 187 RKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD--DHL 243 K + E+ + + + +AL G R G+I +++ DI L Sbjct: 172 AKKHKATSYEEEDTAALLSALEEQPLKFQAIVYIALGCGLRRGEIMGLEWKDIDLTKGTL 231 Query: 244 HVIQE--------------KT-GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHF 288 V Q K S+ I + ++ R R L Sbjct: 232 EVRQSSQYLPGHGTFAKSPKNESSERIIAVPTETMSLLKQHRVQQNEQRLQVGG--LWQA 289 Query: 289 FRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL--- 345 G + +++T FS + P FH R + + G+ Sbjct: 290 SDRLFTTWDGKPMHPDSITKWFSGFLKNNNLS-----PLPFHGLRHTAASYMIKAGIPLK 344 Query: 346 DTQKLLGHKTQQQTD-RYHDD 365 + LGH + T Y Sbjct: 345 NIASRLGHSSPNTTLNIYAHS 365 >UniRef50_A1AN30 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AN30_PELPD Length = 367 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 66/383 (17%), Positives = 121/383 (31%), Gaps = 61/383 (15%) Query: 13 PNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD 72 P +Y + K +W V GK E+ + +A+ LA ++ I+ Sbjct: 6 PGIY-----RRGKTFWITYMGVDGKQQW----ESTRSKLKADADYLLACRKKEVAEGITP 56 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 K T ++Y YK KA V L+ G + + Sbjct: 57 VTFNRKKYTTTFDQLAEKYLEYCK--------AQRDYKSKAGRVRRLQRTFGEMRLIDIT 108 Query: 133 VRDIAQLLDEYIAA--------------GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + ++ + P + L ++F +A+ +G +P Sbjct: 109 LEELERYQSARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWGLIPDSTLK 168 Query: 179 -ALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 + + R + L++ E + D R + ++ AL TG R G+I + + Sbjct: 169 TVRKVRLTKENNRRLRFLAVAEMTALVDSC---SRGLREIVVFALNTGCRRGEILSLTWD 225 Query: 237 DIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 + + + K G IP++ +L D+ S Y+ + Sbjct: 226 HVDLKHGFIRIADSKNGESRDIPINA-------ALADMFKGVVRRIDSPYVFTNPDTG-- 276 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLL 351 + + +F+ A A I FH+ R G+D +LL Sbjct: 277 ------TRYQDVKRSFATACRRAAI-----MNFHFHDLRHTFASHLVMNGVDLTTVSRLL 325 Query: 352 GHKTQQQTDRYHDDRGKGWSKVA 374 GHK+ T RY K Sbjct: 326 GHKSLTMTLRYSHLAPDHLKKAV 348 >UniRef50_C6MS46 Integrase family protein n=1 Tax=Geobacter sp. M18 RepID=C6MS46_9DELT Length = 356 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 65/369 (17%), Positives = 126/369 (34%), Gaps = 46/369 (12%) Query: 21 RKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGK 80 RK Y+ V K + + E A + Q+T + T + K Sbjct: 7 RKTQDGKVTYRVLVRLKGYPPQSATFERKTDAKKWA-----QQTEAAIREGRHFKTREAK 61 Query: 81 AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLL 140 T + +D+Y + + + + ++ G+ ++ V I + Sbjct: 62 KHTVAEMVDKYVKTVLP------TKPKSKDTQEGQLLWWKDEIGLYTLADVTPAMIGECR 115 Query: 141 DEYIAA-------GRPRMAQVVRSVLIDVFKEAQ-HYGEVPPGYNPALATKQPRRKITRQ 192 D+ +A P + L F A +G V +P K+P+ R Sbjct: 116 DKLLAGKTKGGGLRSPATTVRYMAALSHAFSVAVNEWGWVED--SPMRKVKKPKEPRGRV 173 Query: 193 R-LSLEEWKKIFDIAD-ATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQE 248 R L+ +E ++ + A + + + +LLAL TG R +I +K+ DI L + Sbjct: 174 RFLTDDERNRLLEAAKRSCNNCLYPVVLLALSTGMRFSEIMNLKWKDIDLKRKCLILHDT 233 Query: 249 KTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTM 308 K G + +P+ +++ V + + + L Sbjct: 234 KNGERRNVPVVNLAHSVLTERSKV-----RRLGTELVFPSIS--------DPTMPSNLRK 280 Query: 309 NFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYHDD 365 +++ A A ++ FH+ R + G + ++LGHKT RY Sbjct: 281 SWAAAVRDANLED-----FRFHDLRHSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHL 335 Query: 366 RGKGWSKVA 374 + S+V Sbjct: 336 SEQHTSRVV 344 >UniRef50_B9MP49 Integrase family protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MP49_ANATD Length = 373 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 69/380 (18%), Positives = 131/380 (34%), Gaps = 50/380 (13%) Query: 22 KVNKVYWRYKH--PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 K K Y+ V GK E A A EA R+ + + ++ Sbjct: 7 KKGKKYYIVVDIGVVDGKRKQKWLGGFETKAEAEEALPRILNIIYQNKNKLLEQK----- 61 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQ 138 T LD + + + + L+T++ + ++ ++ G ++ + D+ + Sbjct: 62 ---TFGELLDLWL----NTVAKNRVSLSTFQSYSSSIALHIKPFLGDVELNKLTAMDLQK 114 Query: 139 LLDEYI--AAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL 196 +A ++ A + NPA PR++ + + Sbjct: 115 YYQHITGEKGLSSTLALYHHRIIHQALDYAVRMNMIEK--NPADYVDPPRKRSYQPSIWD 172 Query: 197 EE-WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKT----- 250 E+ K+ DI T+ ++ +LLA+ TG R+G+I+ +K+ DI + +++ KT Sbjct: 173 EDTIKRALDIFRNTNIWVP--VLLAIYTGMRIGEITALKWDDINLEQGYIVVSKTLMKIN 230 Query: 251 ------------GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 S + +S + R + ++ L H E G Sbjct: 231 RQLYIKEKGENKSSYRIVAISSNVIEELKQWRRKQEQYKEKLK--ELYHNEGFVCTFEDG 288 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL---LGHKT 355 +T F K + + FH+ R L + G+D + + LGH T Sbjct: 289 RVQDPKYITKVFQKTIEKHGLP-----KIRFHDLRHTHASLLLKHGVDPKHISDRLGHST 343 Query: 356 QQQTD-RYHDDRGKGWSKVA 374 T Y + KVA Sbjct: 344 ITTTLNIYSHVFDEKRRKVA 363 >UniRef50_B6ALQ5 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALQ5_9BACT Length = 367 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 106/358 (29%), Gaps = 45/358 (12%) Query: 25 KVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITT 84 W ++ GK + A R+ Q R K + +T Sbjct: 17 SGIWWVRYTWQGKEI---RRKIGRKTDAKNYYARVRAQILEG------RYEPEKPRVVTL 67 Query: 85 STWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYI 144 WL Y + Q+ G + I+++ ++ ++ Sbjct: 68 GAWLGEYMETVTSV---------SLSQQRGYAKFWTNTLGGRPIASIKTAELERIQVSLR 118 Query: 145 AAGR--PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ-RLSLEEWKK 201 AG+ P + L F A G + NP + R LS + K Sbjct: 119 EAGKLAPSTINRHFAFLKHTFNIALRDGLIKE--NPVKGVHFFKEPKGRTVFLSEADEAK 176 Query: 202 IFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHVIQEKTGSKIAIPLS 259 + ++ + LA+ TG R + +++ +I L V K+G +PL+ Sbjct: 177 LK---ESFSPEYWPYVELAIHTGLRQSEQFNLRWENIDMTSRVLTVPVSKSGLTRHVPLN 233 Query: 260 LRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARI 319 A+ L+ R +S ++ ++ G F A + A + Sbjct: 234 DTALAVLRDLKA-----RQVILSPWVFPSPVDHTKPRDGNAFY----KKVFVPAIEKAGL 284 Query: 320 DWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 +H R + G+ QKL GHK T Y + Sbjct: 285 S-----GVVWHTLRHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAHLSPDHLHEAV 337 >UniRef50_C9RBE5 Integrase family protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RBE5_AMMDK Length = 414 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 116/349 (33%), Gaps = 45/349 (12%) Query: 56 NTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKP 115 A ++ Q L + + +T WL + K G +R T Sbjct: 72 TREEAVKKLTQALHQASLGVLTAPARLTLGEWLATWLETY----KKGKLRPTTLANYETV 127 Query: 116 VS-LLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVP 173 + + G + +V + L + A G R ++V VL K+A G + Sbjct: 128 IRAYILPSLGSVPLRSVTPASLQALYNSLSARGLSARTVRLVHVVLNACLKQAVKNGLLV 187 Query: 174 PGYNPALATKQPRRKITR--QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDIS 231 NPA AT+ P+ K + L+ EE + A + A LAL TG R G++ Sbjct: 188 --RNPAEATEPPKLKRRVPVRPLAREEVEAFLKAAR--GERLYPAFALALKTGLRRGEVL 243 Query: 232 RMKFSDIWDD---------------------HLHVIQEKT-GSKIAIPLSLRLNAINWSL 269 +K+ D+ + L + KT S+ +PL+ + A+ S Sbjct: 244 GLKWEDVDLERGVLRVRRSLVEAKDPETGKVRLVFQEPKTEKSRRTVPLTRDVVALLKSH 303 Query: 270 RDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATF 329 + + Y AY + E G + F A ++ F Sbjct: 304 KARQNEEKLYFGEAYEDNGL--VFCTELGKPIWPRNFLRAFHSVLKKAGLERHR-----F 356 Query: 330 HEQRSLSERLYKEQG---LDTQKLLGHKTQQQTD-RYHDDRGKGWSKVA 374 H R L G + Q+LLGH+ T Y + K Sbjct: 357 HALRHTFATLLLASGEELKNVQELLGHERISTTADVYAEVLEDAKKKAV 405 >UniRef50_Q0F389 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=Q0F389_9PROT Length = 331 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 64/357 (17%), Positives = 119/357 (33%), Gaps = 41/357 (11%) Query: 22 KVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKA 81 K + +R + GK A T + + +L E + L D + T + Sbjct: 9 KNGRTTYRVQVYHRGKVVADATFDFRR-------DAQLFEAEVKTKLQRGDFVDTRLAER 61 Query: 82 ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLD 141 L+RY R K ++ + ++ +S + DI + D Sbjct: 62 TLFGEALERYAENIVPRKKGARQEMSRVRTLSR------SSLVRLPLSKIRTPDIIKYRD 115 Query: 142 EYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP--RRKITRQRLSLEEW 199 + P ++ +V+ +F A + NP P ++ +RL E Sbjct: 116 SRLKEVGPNSVRLELAVISHLFTVASRDWGMNYLSNPVARGVMPSVKQTARDRRLQPGEE 175 Query: 200 KKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLS 259 ++ +G+ ++ AL T R +I+ +++ DI + + K G + +PLS Sbjct: 176 DQLMQACKEYGGVIGDIVMFALETAMRRAEIASLRWEDIHGNIARLHDTKNGERRDVPLS 235 Query: 260 LRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARI 319 R I V + + N ++ FS+ A I Sbjct: 236 SRAREIIHRRAKVRSLNDKRVFG------------------IAPNGISQAFSRVCKHAGI 277 Query: 320 DWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYHDDRGKGWSKV 373 FH+ R + E+G + + GHKT Q RY R + + Sbjct: 278 -----VDLRFHDLRHEATSRLFERGLNPMQVASITGHKTLQMLKRYTHLRAEDLVAL 329 >UniRef50_D2BJR0 Site-specific recombinase, phage integrase family n=2 Tax=Dehalococcoides RepID=D2BJR0_DEHSV Length = 385 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 62/373 (16%), Positives = 125/373 (33%), Gaps = 56/373 (15%) Query: 26 VYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTS 85 V + + P TGK + A + L ++ K T Sbjct: 16 VVYMGRDPKTGKKIYQWQTVKGTKSHAEKELAALINRKNNGSFV--------KPTKTTVG 67 Query: 86 TWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYI 144 T+L+ + S + T+++ ++ V L G ++ + I + + Sbjct: 68 TFLESWLETY----ASCNTAPRTFERYSQIVRLHLTPNLGRIELTQLRPEHIQAYYSKAL 123 Query: 145 AAG-------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSL 196 + G + + VL + A +G + N A+A PR + ++ Sbjct: 124 SGGRVSGGGLSAQTVKHHHRVLSEALNHAVKWGLL--ARNVAMAVDPPRPEKREMHTIAP 181 Query: 197 EEWKKIFDIADATHR----YMGNAMLLALVTGQRLGDISRMKFSDIW------------- 239 E+ +F+ A + + AL TG R G+I +++SDI Sbjct: 182 EDMSVLFEEAAKMEKNSGLPYELIFMTALHTGMRRGEILALRWSDIDLAKSKIYVRCSLQ 241 Query: 240 ---DDHLHVIQEKT-GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + + + + KT GS+ + ++ L ++ + + + + Sbjct: 242 CLKNGEIIIREPKTPGSRRLVSMTPSLLEKLIIHKE--SSSANMILQGKTLQGDSLVFAH 299 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLG 352 G + NT++ F+K A ++ H+ R L G+ + + LG Sbjct: 300 FDGTPINPNTVSPAFAKIAKRAGLN------LRLHDLRHSHATLMLTAGVHPKIVSERLG 353 Query: 353 HKTQQQT-DRYHD 364 H T T D Y Sbjct: 354 HSTVAFTLDTYSH 366 >UniRef50_B0KAT2 Phage integrase family protein n=7 Tax=Clostridia RepID=B0KAT2_THEP3 Length = 373 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 61/370 (16%), Positives = 112/370 (30%), Gaps = 46/370 (12%) Query: 21 RKVNKVYWRYKH---PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 RK Y GK + + A +A + +A ++ Sbjct: 6 RKRGSTYSIVVDVGRDENGKRKQKWISGFKTKKEAEKALAEI--------IAKIEKNEFI 57 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDI 136 + IT +++ + I + T + + + G + + +I Sbjct: 58 EPSKITLQQFINEWLKIYGE----PKWAPKTLVSNKSLIDNYIIPNLGHIELQKLKPVEI 113 Query: 137 AQLLDEYIAA-GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRL 194 + + V +L V K A + + NP + P++ Sbjct: 114 QKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYI--AKNPCELVEAPKKDKKEFVTW 171 Query: 195 SLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKI 254 + E KK I T Y+ + AL TG RLG+I +++ DI + + +T +I Sbjct: 172 NFEHVKKAKKIFKDTPIYIHVMI--ALYTGLRLGEICGLRWEDIDFKNQTITVRRTAQRI 229 Query: 255 A----------------IPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 I + L I ++ + + Y+ + S E G Sbjct: 230 DGRFIFKEPKTETSKGIISIPDFLVQILKQEKNKQLQNKLIFGEKYITEYEGFISVWEDG 289 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKT 355 + + +T F K + FH+ R L G+D K L H Sbjct: 290 RFKEPDYVTKKFRKILKK----QSDIPVIRFHDLRHTHATLMLRSGVDLKIISKRLRHGR 345 Query: 356 QQQTDR-YHD 364 T Y Sbjct: 346 ISTTADFYSH 355 >UniRef50_B1B8Q2 Phage integrase n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B8Q2_CLOBO Length = 366 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 116/330 (35%), Gaps = 31/330 (9%) Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 E +++ ++ + +T +++ + + +TYK+ + + Sbjct: 41 EAALAELINQIEKGSIITNDKMTVKEYIEYWLETY----PKNNCSPSTYKRYKFFIKDII 96 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAG--RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 G +S ++ I + ++ ++ +L K AQ + + NP Sbjct: 97 NYIGKHKLSKLNPMIIQKFYEDLLSDRNISNNTVIKTHRMLHLALKHAQQWQLI--NNNP 154 Query: 179 ALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 P+ + +E DI ++ A+ LA+ TG R+G++ +K+SD Sbjct: 155 CDLVTPPKATKQEMKYWQPDEINIYLDILKEE--FLYPAIFLAIQTGCRVGELCAIKWSD 212 Query: 238 IWDDHLHVIQEKTGSKIAIPL---------SLRLNAINWSLRDVVARCRDYAVSAYLVH- 287 + + +KT +I L S+R + + + + + L + Sbjct: 213 VDLIDKTIRIDKTLQRIDCKLALKYPKTQNSIRTITLLETAITFLKNLKKNRIEKKLKYG 272 Query: 288 -FFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD 346 E G + + ++ +F K D + FH+ R L + G++ Sbjct: 273 IELDYVLCWEDGRPIDPHYISQHFPKLLDKYNLP-----KIRFHDLRHSHATLLLKAGVN 327 Query: 347 TQ---KLLGHKTQQQT-DRYHDDRGKGWSK 372 + K LGH T T D Y K + Sbjct: 328 AKIISKRLGHSTVAFTLDTYSHVSTKMQKE 357 >UniRef50_C6BFQ2 Integrase family protein n=4 Tax=Betaproteobacteria RepID=C6BFQ2_RALP1 Length = 412 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 59/382 (15%), Positives = 122/382 (31%), Gaps = 46/382 (12%) Query: 7 KNNVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEANTRLAEQRT 64 + V L + + Y+ V K +G + A L + Sbjct: 33 YYDTKVSGLAIGIGASGVRTFVLYRK-VNRKPERIKIGRYPDLTVEKARTQAMALNGEIA 91 Query: 65 RQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER-- 122 + + +T D+Y K T + + Sbjct: 92 TGTNPA--ELKRIRRAEMTFGDLFDQYYKNHSLPNK------KTSDEDKQKFDQYLSSNR 143 Query: 123 ----AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + +SA+ DIAQL + + A V +++ +F +A +G + NP Sbjct: 144 DGVNLASRQLSAISKADIAQLFGKISMEHKI-TANRVLALVSSIFGKAIEWG-IWNQMNP 201 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDI-ADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 ++ R + L +E K F+ + + + ML++L+TG R ++ M++ D Sbjct: 202 CQGIRRNRENSRDRFLHPDELPKFFEHVLAYPNATLRDYMLVSLLTGARRSNVLAMRWED 261 Query: 238 IWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + + + + K G+ ++PL A+ + +++ + S ++ Sbjct: 262 VNLERAEWRIHETKNGTPQSVPLVPDAVALLRNRQEM----PECEDSPFVFP-----GTG 312 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL---LG 352 + G V+ + A I H+ R G + + L Sbjct: 313 KSGHLVEPK---KAWKIVLTQAGIKDLR-----LHDLRRTMGSWQAGTGANLSVIGRSLN 364 Query: 353 HKTQQQTDRYHDDRGKGWSKVA 374 HK+ T Y W + Sbjct: 365 HKSTATTAIYARL----WMEPV 382 >UniRef50_A8LM37 Integrase family protein n=3 Tax=Rhodobacterales RepID=A8LM37_DINSH Length = 388 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 71/377 (18%), Positives = 124/377 (32%), Gaps = 37/377 (9%) Query: 9 NVSVPNLYPLYSRKVNKVYW-RYKHPVTGK--FHALG-TNEAEAIAIATEANTRLAEQRT 64 + ++P +K Y +Y++ TG+ +G + A E Sbjct: 25 DTALPGFGLRVKSSGSKSYVVQYRNRQTGRSRRKTIGQHGPLMTLYQAREIARGYLADAL 84 Query: 65 RQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL-RERA 123 R + + A K K++ D Y K R + + + Sbjct: 85 RGGDPVMEAQARRKAKSM--RDLADDYMTNHALPKK----RPRSAAMDRSLLDRVVLPAF 138 Query: 124 GMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 G + + V +DI +L + P A V ++L +F+ A +G G NP Sbjct: 139 GRQSVDEVSHKDIQRLHNSL--RDTPYQANRVLALLSKMFELAIRWGL--RGDNPVKGVP 194 Query: 184 QPRRKITRQRLSLEEWKKIFDIADATH-RYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 + + + LS E ++ + DA + NA+ L L+TG R G++ ++SD D Sbjct: 195 RFAEEKRYRWLSDNELDRLREALDAHPNQRAANAIRLQLLTGARTGEVLTSQWSDFDLDR 254 Query: 243 --LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 T K L L+A +L +A R S ++ + G Sbjct: 255 GVWVKPSHHTKQKRTEHLP--LSAATVALLRSIAHGRTD-DSPFVFP------GRKPGHP 305 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQ 357 + L ++ A + H+ R G +LLGH Sbjct: 306 I--KDLKRFWTSVTSTAGLKDYR-----LHDNRHTHASHLVSSGHSLPIVGRLLGHTNPM 358 Query: 358 QTDRYHDDRGKGWSKVA 374 T RY + A Sbjct: 359 TTQRYAHLADDPLRQAA 375 >UniRef50_Q88G06 Phage integrase, putative n=12 Tax=Gammaproteobacteria RepID=Q88G06_PSEPK Length = 349 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 127/376 (33%), Gaps = 48/376 (12%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYW--RYKHPVTGKFHALGTNEAEAIAIATEANTR 58 M R +N P +Y +K N W Y +GK LG + +A E + Sbjct: 1 MRPRKTENRDLPPGMYRRKRQKANGKVWEALYYRDRSGKDIFLGNDLVKAKLKWAELEAK 60 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 + + T D Y + T K + Sbjct: 61 -----------------SVPKELTTMKGIFDEYLLKIVPGK-----AVRTQKDNIYELKQ 98 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 LR I A+ IAQ D A A ++L VF A+ +G NP Sbjct: 99 LRNVFDSAPIDAITPAMIAQYRDSRSAK---TRANREIALLSHVFNTAREWGLTTRD-NP 154 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 L ++ + K + W+ +++ A + +AM LA +TGQR D+ M+ D+ Sbjct: 155 CLGVRKNKEKPRDFYANETVWQAVYEEA---PPELKDAMDLAYLTGQRPSDVLSMRKDDM 211 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 +L V Q KTG ++ I L + + L + + H E G Sbjct: 212 EGIYLLVSQGKTGKRLRIVLEVDGVKNSLGL------LLERIMHRTSGHLSPFFIVNEHG 265 Query: 299 AQVKANTLTMNFSKARDLARIDWG---------EGSPATFHEQRSLSERLYKEQGLDTQK 349 ++ L ++ AR+ AR+ + F + R + D Sbjct: 266 KRMSWPMLRNRWADAREDARVKAEVEKKPDLANRIAQFQFRDIRPKAASE-INDLSDASV 324 Query: 350 LLGHKTQQQTDR-YHD 364 LLGH + T+R Y Sbjct: 325 LLGHSKEGITERVYRR 340 >UniRef50_UPI0000E0E5BD Tyrosine recombinase xerC n=2 Tax=Proteobacteria RepID=UPI0000E0E5BD Length = 383 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 62/381 (16%), Positives = 122/381 (32%), Gaps = 40/381 (10%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 + ++P + + RK +K Y+ K H LG A ++ A + +L Sbjct: 22 KAEYRADNLPKGFRIEIRKTSKGIGTYRFRTKVKDHNLGRTNALSLEQALQQAAQLIPSP 81 Query: 64 TRQILAISDRIATSKGK-AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRE 121 T + +S IA + T + + ++Y RL T + ++ Sbjct: 82 TPPHIPLSPPIAQASPTCTFTLNEFWEQY------YWPHIKTRLRTCRNIESMWRIRIQP 135 Query: 122 RAGMKLISAVDVRDIAQLLDEYIA-AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 G + + + V ++ + I +L +F A + + NP Sbjct: 136 TFGHQRLDDIKVLELERFQTSLIEMQLSGSHVTGHIKLLSRMFTLAIQWELITK--NPCD 193 Query: 181 ATKQPRRKITRQR-LSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 + + ++R LS +E + + + R + M+ LVTG R G +++S I Sbjct: 194 KVEYMKFDNQKERFLSSDEQTRFISVLMEHPERPVNLLMIFLLVTGVRSGVAKSLRWSWI 253 Query: 239 WDDHLHVI----QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 + + K + I L+ D++ R + ++ Sbjct: 254 NMEKQIITVPPSIAKNKKQNTIFLNTTAM-------DILKRLAGINPTYVFINPM----- 301 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLL 351 Q+ N +F A A+I H+ R + Q+L Sbjct: 302 ----TQLPYNDFKKSFKTALKAAQISDS----VRIHDLRHTFCSNLVSNNVSLASVQQLA 353 Query: 352 GHKTQQQTDRYHDDRGKGWSK 372 H T RY + Sbjct: 354 NHACYSTTLRYAKVSQDTLRE 374 >UniRef50_Q8XZ52 Putative integrase/recombinase protein n=1 Tax=Ralstonia solanacearum RepID=Q8XZ52_RALSO Length = 354 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 75/367 (20%), Positives = 139/367 (37%), Gaps = 33/367 (8%) Query: 17 PLYSRKVNKVYWRYKHPVTG-----KFHALGTNEAEAIAIATEANTRLAEQRTRQILAIS 71 K +V ++ K TG K EAEA ATE + ++ + A + Sbjct: 5 IEKYTKRGEVRFQAKIRRTGVPIASKVFP-SREEAEAWIQATEPELQARSRQAARQQAQA 63 Query: 72 DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAV 131 IA K + + L R+ + R K + + S+LR + + Sbjct: 64 KLIAKFKDRPRIVADLLHRHMQEETVRKKGAE------AETHHISSILRYPLARIHLDNL 117 Query: 132 DVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 DI + D+ + P +++ K A H +V + + ++P R Sbjct: 118 TRSDIKEWRDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAICQSVLTSVRRPSNPPGR 177 Query: 192 -QRLSLEEWKKIFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQ 247 +RLS EE + + T + Y+ + LAL T R G+I +++ I H + +I+ Sbjct: 178 VRRLSPEEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLIE 237 Query: 248 EKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLT 307 K G+ +PLS + +L+ V A ++ G + AN Sbjct: 238 TKNGTPRGVPLSRHAMKVLATLKQVAA-------HELGYEGELNSGPVFPG--LTANAFK 288 Query: 308 MNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYHD 364 + F++ + A ++ FH+ R + E+G ++ + GHK + RY Sbjct: 289 LAFNRMMERAGLEN-----FRFHDLRHEATSRLFEKGLSVMEVASITGHKDIRMLQRYTH 343 Query: 365 DRGKGWS 371 + K + Sbjct: 344 LQVKDLA 350 >UniRef50_B5YIK4 Site specific recombinase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIK4_THEYD Length = 345 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 69/369 (18%), Positives = 126/369 (34%), Gaps = 52/369 (14%) Query: 14 NLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDR 73 LY W + + GK T + A + + L D Sbjct: 2 GLYKR------GNIWWFSVTIKGKQFRFSTKTTDRKK---------ATEIYAKALLELDN 46 Query: 74 IATSKGKAITTSTWLD-RYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 I+ + + +Y + R +++ K ++ E I+ + Sbjct: 47 PTKDVENQISFGEFFENQYLPFSE--------RQASHQSKKYYFKVIPEWFKKIPINQIT 98 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP-ALATKQPRRKITR 191 RDI L + + P + + + ++A + K + ++ R Sbjct: 99 TRDIELLQGDLLKGRTPASVNRIIATIKHSLRKAYEWELTEEETLKRVQRVKPLKGEVQR 158 Query: 192 -QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHVIQE 248 + LSLEE K+ ++A+ ++ ++ AL TG R G+I + +S I +H+ + Sbjct: 159 LRFLSLEECHKLIEVAE---PHLKPIIITALNTGMRKGEILSLTWSQIDLKHGFIHLEKT 215 Query: 249 KTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTM 308 K G + IP++ L + L S Y+ E G ++ + Sbjct: 216 KNGERRDIPMNDTLKILFRDLIK-----NRRLDSDYVFL------NPETGKRLTD--IKR 262 Query: 309 NFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDD 365 +F A A I FH+ R G+D Q+LLGHKT + T +Y Sbjct: 263 SFRTACKRAGITD-----FRFHDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTLKYSHL 317 Query: 366 RGKGWSKVA 374 K Sbjct: 318 SKAHKEKAV 326 >UniRef50_Q5X3B3 Putative uncharacterized protein n=2 Tax=Gammaproteobacteria RepID=Q5X3B3_LEGPA Length = 353 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 68/372 (18%), Positives = 123/372 (33%), Gaps = 49/372 (13%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 + K K+ +R K + G E + A + Q+T + T+ Sbjct: 6 KRTSKEGKISYRVKIRLKG--FPTQHATFERLTDARKW-----VQQTESAIREGRHFKTT 58 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIA 137 + K T +DRY + K + ++ +E G ++ + IA Sbjct: 59 EAKRRTLGEMIDRYIKDVIQE------KPKNLKNRVLHLNWWKEELGQYSLAELSPAMIA 112 Query: 138 QLLDEYIA-------AGRPRMAQVVRSVLIDVFKEAQ-HYGEVPPGYNPALATKQPRRKI 189 + D+ A P + L F A +G + +P +P+ Sbjct: 113 EKRDKLSAGITSRNLKRSPSTVVRYMASLSHAFTIAVKEWGWLED--SPMRRVTKPKEPR 170 Query: 190 TRQR-LSLEEWKKIFDIAD-ATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHV 245 R R LS +E ++ + +Y+ A++LAL TG R +I + + ++ + + + Sbjct: 171 GRVRFLSDDERARLLSECKKSDSQYLYLAVVLALSTGGRKMEILGLSWKNVDFNRSIITL 230 Query: 246 IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANT 305 + K G + +PL+ + V + S + Sbjct: 231 HETKNGERRVLPLTGHALDLMKQHAKV-----RHVNSDLVFPGKDFK---------TPID 276 Query: 306 LTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRY 362 L F A A I +H+ R G + ++LGHKT Q RY Sbjct: 277 LRTPFETALKRAGITD-----FRWHDLRHSCASYLAMNGASLAEIAEILGHKTLQMVKRY 331 Query: 363 HDDRGKGWSKVA 374 SKV Sbjct: 332 AHLSEAHTSKVV 343 >UniRef50_A8UVD2 Phage integrase family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVD2_9AQUI Length = 361 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 64/381 (16%), Positives = 125/381 (32%), Gaps = 38/381 (9%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M +P+K + L ++R+ + LG + A +L Sbjct: 1 MPRKPKKRGKTA--LGDNLYIIHGSHWFRFTYRGKTYTKRLGRVNELPLTSAKHIAGKLR 58 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 Q I + K + S ++Y + + T ++ + V L Sbjct: 59 TQ-------IIENQYLEKKEVPLFSEVAEKYFEWYK--TERANASRRTIRETERRVKKLV 109 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 E G K + I + I G +P ++L + ++ + G P Sbjct: 110 EVFGDKTLDYFSEFLIDSYKQDRIKEGVKPSTVNRELNILRAILRK-VKEWGMYSGDLP- 167 Query: 180 LATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 K + R + LS EE K + D + + A +TG R ++ + + + Sbjct: 168 -RIKTYKVDDERVRYLSPEELKALIDAC---PDWFKPVVKFACLTGLRASELFSLTWDMV 223 Query: 239 W--DDHLHVIQ--EKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 + ++ V KT IPL + +V+ + ++ + + T++ Sbjct: 224 NLSEGYITVPAKYSKTKETKRIPLHPKA-------LEVLREVKARQEERWIDYGYVFTNR 276 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLL 351 + V+ F A + A I FH+ R G+D Q+L+ Sbjct: 277 MGKPYSVEGQGYKRVFKTACEKAGIRD-----FRFHDLRHTFASYLVMSGVDFYTVQELM 331 Query: 352 GHKTQQQTDRYHDDRGKGWSK 372 H + + T RY + K Sbjct: 332 RHSSPRMTKRYAHLSPEHIRK 352 >UniRef50_C8WVH7 Integrase family protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVH7_ALIAD Length = 391 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 65/359 (18%), Positives = 116/359 (32%), Gaps = 38/359 (10%) Query: 32 HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRY 91 P TG++ + ++ A A + + K+ T W R+ Sbjct: 28 DPQTGRYPQVTRKGFKSERAAKSAMMEHLRSLEDTPVVHA--------KSFTLHEWASRW 79 Query: 92 QAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPR 150 A KS +R T + + + G IS ++ R I L + +P Sbjct: 80 FAD-----KSSSLRPWTRRTYHHVLQAYILPELGKMPISKIEARHIQALYRKLSNRLKPV 134 Query: 151 MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP-RRKITRQRLSLEEWKKIFDIADAT 209 + VL A G + +P L + P + + LS+ + ++ Sbjct: 135 TVHRIHRVLKTCLLAAVKAGYL--DKSPFLNVEPPEHKTPPKPVLSVNDAFRLLAWLREH 192 Query: 210 HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSK-------IAIPLSLRL 262 A LA+ TG R+G+I+ +++ DI D + E+T + + P + Sbjct: 193 RPTSYMAAFLAIHTGMRMGEIAGLQWRDIDLDTGVIQLERTRYRPKGGQDFLGPPKTFGS 252 Query: 263 NAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA-----ERGAQVKANTLTMNFSKARDLA 317 R+VV R + S + T ++ A + AR Sbjct: 253 RRRIVVTREVVDELRRWKQSQQEIERESWTPESFVVRLPNSAPPSPASFNNAIQNARKEL 312 Query: 318 RIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTD-RYHDDRGKGWSK 372 + P +FH R E G+D + LGH + T Y + Sbjct: 313 GLP-----PVSFHGLRHTHATWLLESGVDLKIVSERLGHSSITITADIYAHVTDALQRE 366 >UniRef50_C6HUB8 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUB8_9BACT Length = 347 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 57/351 (16%), Positives = 114/351 (32%), Gaps = 39/351 (11%) Query: 28 WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTW 87 W + V GK T +E L +A D G+ T S Sbjct: 10 WWMRFSVQGKQIRRSTGTSERKLADKVYKKVL------GEIAEGDWFDRLPGEEKTLSEL 63 Query: 88 LDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAA- 146 D+Y + K + + KA + +L+E G + + I + Sbjct: 64 FDKYLE---EHSKPNKSSKSYIRDKAISLRMLKE-FGDVTLIEIGTEQIFDYKKKRREEN 119 Query: 147 GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDI 205 P + L F+ A +G + NP + + K +R L+ EE +++ Sbjct: 120 LAPASLNKEIAFLRHAFEMAVLWGWLE--VNPVSRIPREKVKNRMERWLTGEEEERLLKA 177 Query: 206 ADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLN 263 ++ + ++ AL TG R ++ + ++ + D + +K + +P++ + Sbjct: 178 C---PEWLRDMVIFALNTGFRQNEMLSLTWNQVDWDRKAILFWDQKNNGRDTVPVNEKAI 234 Query: 264 AINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGE 323 + + V + G A + +FS A + A+I Sbjct: 235 DVLKRIGKVKS------------LSSGHVFLTSNGTPFIARNVVRSFSLALEKAKITN-- 280 Query: 324 GSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWS 371 +H+ R G+D Q+L ++ RY + Sbjct: 281 ---FRWHDLRHTFATRLVHAGVDLYTVQRLGRWRSLSMVMRYAHHNLESLR 328 >UniRef50_Q1AUQ4 Phage integrase n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUQ4_RUBXD Length = 379 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 69/370 (18%), Positives = 120/370 (32%), Gaps = 57/370 (15%) Query: 20 SRKVNKV---YWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 RK Y Y + G AE A + N L+++ Sbjct: 13 RRKNGGWMGQYVVYTAEGRKRKTVYGKTRAEV---AKKLNKALSDREDGLFF-------- 61 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRD 135 + ++DR+ + G++ T V ++ G + + Sbjct: 62 -DAGNLKVGEYMDRWLRDSVE----GNVGPRTLANYKLQVRRHIKPVLGEIQLKTLTPAH 116 Query: 136 IAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR-RKITRQR 193 + L + + AG P + + +VL +A +G VP N + A P+ Sbjct: 117 VQGLYRQKLDAGLAPSSVRYIHAVLHRALTQALRWGLVP--RNVSEAVDLPKLVSEEVDA 174 Query: 194 LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD------------ 241 L+ EE +K D A ++A++TG R G++ +++SDI Sbjct: 175 LTPEEARKFLDAAR--GDRFEALYVVAVMTGMRRGELLGLRWSDIDLGQNAPATLRVGRQ 232 Query: 242 --------HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS 293 L + K G I L R + R A R A Y Sbjct: 233 LQRMRDGSGLKFVAPKGGKGRTIRLPSRAVEALKAHRARQAEERLKAGPLYRDEGL--VF 290 Query: 294 QAERGAQVKANTLTMN-FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQK 349 +E G ++ + + F A + FH+ R + QG++ Q+ Sbjct: 291 ASEVGTPLEPSNIDRRSFKPLLKKAGLPDIR-----FHDLRHTCATVLLSQGVNPKFVQE 345 Query: 350 LLGHKTQQQT 359 LLGH + T Sbjct: 346 LLGHADIKLT 355 >UniRef50_C0DYX2 Putative uncharacterized protein n=2 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYX2_EIKCO Length = 344 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 128/387 (33%), Gaps = 59/387 (15%) Query: 3 ARPRKNNVSVPN--LYPLYSRKVNK--VYWRYKHPVTG--KFHALGTNEAEAIAIATEAN 56 R R N ++P+ L +RK K VY+ Y G K LGT+ A+ ++ Sbjct: 2 GRKRSANSNLPDRMLARRRTRKNGKTTVYYYYDGREDGRRKEIPLGTDYIAAVQEWSKL- 60 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 + K +T +RY NT V Sbjct: 61 ---------------EAAKLPKSARVTFPVAAERYLQNIISHR-----SRNTISSANNAV 100 Query: 117 SLLRERAGM---KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVP 173 L + G + ++ + + LD P A L +F A+ G Sbjct: 101 RKLSKFFGGENPAPLDEIEPAHVRRYLD--WRKDTPGGANNEIGYLSAIFNYAREQGW-T 157 Query: 174 PGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRM 233 NP K+ +K + ++ ++ A M + M +A +TGQR DI + Sbjct: 158 SKENPCRNVKKHSKKRREVYIEDYLYQAVYQAASQ---QMRDLMDIAYITGQRPVDIVGI 214 Query: 234 KFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS 293 S I + LH+ Q+KTG+K+ +S + L++++ R Sbjct: 215 HSSHIHEGILHISQQKTGAKLRFEISGK-------LKEIIDRIHQDNG---------YLF 258 Query: 294 QAERGAQVKANTLTMNFSKARDLARIDWGEGSP----ATFHEQRSLSERL--YKEQGLDT 347 G + L+ F + R E + F + R+ + Sbjct: 259 LNSHGKPLSRAALSRQFLELRKTVMQQRPELAEELSAFQFRDLRAKAATDIYLAADTRSA 318 Query: 348 QKLLGHKTQQQTDRYHDDRGKGWSKVA 374 LGH ++Q T Y RGK + Sbjct: 319 SDQLGHASEQMTKIYIR-RGKILKPLK 344 >UniRef50_Q5P749 Similar to phage-related integrase n=3 Tax=Bacteria RepID=Q5P749_AZOSE Length = 411 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 131/375 (34%), Gaps = 36/375 (9%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEANTRL 59 R ++ L S K + Y+ G+ LG A + A +A + Sbjct: 24 GKRDTYHDTKTTGLQLRVSATGVKSFSVYRRLKAGQPERVTLGKFPAMTVEQARKAAALV 83 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + + + A T + + Y + G+ +L + L Sbjct: 84 NAEIESGANPAATKRAFK--AEPTLTEFFAEY------GTRHGEKKLAWPADVQRFRDYL 135 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRP-RMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 ++ G K +S +D IA+ L + AG+ + +R++ VF +A +G + +NP Sbjct: 136 QKPMGNKRLSEIDRAMIAKALSDAEKAGKSVATVRNIRALASGVFGKAVEWGRL--DFNP 193 Query: 179 ALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 A K +K++R R L +E + F M + +LLAL+TG R ++ M + + Sbjct: 194 AQGVKVAGKKVSRDRFLQADELPRFFAAVAEEDDTMRDFILLALLTGARRANVCAMHWHE 253 Query: 238 IWD--DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + + + K G + L ++ +D ++ Sbjct: 254 LDLAAGVWRIPRTKNGEPQTVTLCPEAVM-------ILEARKDATGGGFVFP-----GTG 301 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSP--ATFHEQRSLSERLYKEQGLDTQKL--- 350 G V+ + A I +G P AT H+ R G + Sbjct: 302 RTGHVVEPK---KAVERVMARAGIPYGRDVPNGATLHDLRRTLGSWQARTGASLAIIGKS 358 Query: 351 LGHKTQQQTDRYHDD 365 L HK+QQ T Y Sbjct: 359 LNHKSQQATAIYARL 373 >UniRef50_C4XTG1 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XTG1_DESMR Length = 409 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 130/396 (32%), Gaps = 55/396 (13%) Query: 6 RKNNVSVPNLYPL-----YSRKVNKVYWRYKHPVTGK-------FHALGTNEAEAIAIAT 53 +K + + P + + Y+ ++ GK + + G +A I Sbjct: 3 KKLSSNYPGVRFREHETRKDNRRPDRYFSIRYRCRGKNMEEGIGWASEGWTAEDASRILG 62 Query: 54 EANTRLAEQRTRQILAISDRIAT-----SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNT 108 E + Q L R A ++ +T RY ++ Sbjct: 63 EIRQNIRRGTGPQSLRDMARAARGEADAAEAAPLTFGELARRYLD-------WAKRNKSS 115 Query: 109 YKQKAKPV-SLLRERAGMKLISAVDVRDIAQLLDEYIAAG--RPRMAQVVRSVLIDVFKE 165 +K+ + + + +++ D Q D + AG P + V+ V+ Sbjct: 116 WKEDEYLLAKRVLPLFAHRPATSLTRTDTEQFRDALLDAGGLSPMTIKHHLVVIRRVYNW 175 Query: 166 A----QHYG---EVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAM 217 A + G NP + P R + L+ EE ++ + A M + + Sbjct: 176 AASTPVADDPGHMLFEGRNPVSGIRMPLVDNERIRFLTREEADRLLEAAGERLPEMHDII 235 Query: 218 LLALVTGQRLGDISRMKFSDIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVAR 275 LLAL+TG R +I + + D+ + + + T +K R ++ ++ Sbjct: 236 LLALLTGMRRQEILGLMWQDVDLVNRIISIPARLTRAKR-----SRKAFLDEETAAMLQA 290 Query: 276 CRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSP---ATFHEQ 332 R++A S ++ + + +T F + ++ G P FH Sbjct: 291 RREHAQSPFVFPGAVDGRRD-------PDHVTRQFDALVNGIGLNNGVTDPKHKVVFHTL 343 Query: 333 RSLSERLYKEQGLDTQKLL---GHKTQQQTDRYHDD 365 R + G D L+ GHK+ RY Sbjct: 344 RHTFASWLAQAGADIHHLMELTGHKSISTMQRYAHL 379 >UniRef50_C4V5B3 Prophage LambdaCh01, site-specific recombinase phage integrase family protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5B3_9FIRM Length = 377 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 69/371 (18%), Positives = 126/371 (33%), Gaps = 52/371 (14%) Query: 25 KVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITT 84 V + Y+ P TG+ A E ++ + + + + +T Sbjct: 5 DVRYNYRDPATGQIVRKKKRGFLRRIDAEEFLLQINKAQQEGVFL--------TPEKLTL 56 Query: 85 STWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEY 143 ST+L+ + + +++ +TY Q V L AG I A+ I + Sbjct: 57 STYLNTWLSSYAK----VNVKASTYAQYEAIVKKRLIPWAGGCDIKAITPMQIDEFYATL 112 Query: 144 IAAG--------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK-QPRRKI-TRQR 193 + G + + VL + A G + NP L+ P+ K Sbjct: 113 LQQGRADGKGGLSAKSVLYIHRVLNEALGHAVQKGLLVK--NPLLSVTNIPKAKKFKASA 170 Query: 194 LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD------------ 241 S EE + + + A A + + A+ LA + G R G+ +K+S I D Sbjct: 171 YSAEEIRSLLEAAAAENSFWQAAIALAAICGLRRGECLGLKWSKIDFDSQSITIDEQVIE 230 Query: 242 ---HLHVIQEK-TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 +H K T S I + AI ++ + + +++ +AY H Sbjct: 231 IHHKIHFSTPKSTESIRTIHAPAEVFAILKRRKEELDQHKEWLGNAYDEHDLVLCRG--N 288 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLGHK 354 G+ ++ T F + FH+ R L + G+ ++LGH Sbjct: 289 GSPIRPGNFTKAFKDFLARHNMRTIR-----FHDLRHSCASLMLQSGVAMKTASEILGHS 343 Query: 355 TQQQTDR-YHD 364 + T Y Sbjct: 344 SIAITADLYTH 354 >UniRef50_D0CWC5 Phage integrase family protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CWC5_9RHOB Length = 417 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 132/389 (33%), Gaps = 33/389 (8%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ 62 R + ++ LY + K + RY+ K LG +A A A + E Sbjct: 19 RREIPDPALAGLYLVVQPSGAKSWALRYRFAGRPKKLTLGKWPIMGVADARAAASEAIEA 78 Query: 63 RTRQILA-------ISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKP 115 + RI + T L++Y +L+SG + K + Sbjct: 79 LEHGNDPSAAKKKAKAARIEAQLSERDKVKTLLEQYAKRHLSKLRSGS------EVKRRL 132 Query: 116 VSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG 175 + R G I V RDI +LL++ +GR A +R L F +P Sbjct: 133 ETEFLPRYGDHDIHEVTKRDILELLEKIADSGRITTANRMRLYLSGFFNWCLERDAIP-- 190 Query: 176 YNPALATKQ-PRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 +P K + K + L+ +E + + + A L+TGQRL ++ M Sbjct: 191 ISPVQGVKPVAKEKSRDRVLNDDEIRWFWKACERAGYPWRQAGQTLLLTGQRLNEVLGMT 250 Query: 235 FSDIWDDHLHV--IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 ++ D H+ + K G + +PLS + S+ + S + F + Sbjct: 251 DDELHGDAWHLSAQRTKNGREHLVPLSQAARDVLSSV--------ERIESPSRLLFTTTG 302 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QK 349 G N L+ ++ + + E TFH+ R + G+ + Sbjct: 303 RTPICGHFKARNRLSRFMAEIAEAETGEAIEIPHWTFHDLRRTAATGMARLGIPVRVTEA 362 Query: 350 LLGHKTQQ---QTDRYHDDRGKGWSKVAL 375 +L H + Y + AL Sbjct: 363 VLNHVSGTGGGIVAVYQRHDFADEKRKAL 391 >UniRef50_B1JDB3 Integrase family protein n=3 Tax=root RepID=B1JDB3_PSEPW Length = 340 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 57/348 (16%), Positives = 120/348 (34%), Gaps = 41/348 (11%) Query: 30 YKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLD 89 ++ + K + + + A A + +R + + ++ T LD Sbjct: 26 WRAQIRRKGYPTLSATFDTKAEAQRWAAEIEGDMSRARF-----VDMREAESTTLDEALD 80 Query: 90 RYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRP 149 RY + K K+ + + K ++A+ D+A D + G+ Sbjct: 81 RYLSEVTSTKKGAKQEQVRIKKWKEH------KLASKGLAAIRSSDMAAYRDAELKEGKS 134 Query: 150 -RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI-TRQRLSLEEWKKIFDIAD 207 ++ +V+ +F A + NP A + P+ +R + E ++ A Sbjct: 135 TATVRLNLAVISHLFTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPAELTALYKAAG 194 Query: 208 ATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINW 267 + + + LA+ T R ++ ++ + ++ K G + A+PLS R A+ Sbjct: 195 QMNAQLPVFIELAVETAMRRSELLMLRRDHVRGKVAYLEDTKNGERRAVPLSSRAIALLE 254 Query: 268 SLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPA 327 L + R + + NT++ F +A A I Sbjct: 255 GLPTPIGGGRYF--------------------NLALNTISNYFPRACAAAGI-----EGL 289 Query: 328 TFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYHDDRGKGWSK 372 H+ R + + E+G ++ + GHKT RY ++ Sbjct: 290 RLHDLRHEATSRFFERGFTMMEVASITGHKTLAMLKRYTHLSPHDLAE 337 >UniRef50_B2KEQ8 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEQ8_ELUMP Length = 337 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 112/331 (33%), Gaps = 46/331 (13%) Query: 43 TNEAEAIAIATEANTRLAEQRTRQILAISDRIA---TSKGKAITTSTWLDRYQAIQDDRL 99 +++ +LA R+IL + +T + +RY ++ + Sbjct: 16 RYKSKRYKRVVAITRKLALDIERKILTDIKEGKFFPDLDKQDVTFAEIAERYWSLHGRKT 75 Query: 100 KSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVL 159 + T ++ R G ++ + DI + ++ P A S+ Sbjct: 76 RGAQTFKYT-------FDIILSRFGHMKVADITTEDIQKFYNDTWERTSPSTANRHFSLF 128 Query: 160 IDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ-RLSLEEWKKIFDIADATHRYMGNAML 218 + +A + G NP + + R R + E+ K + A+ + + Sbjct: 129 RAIINKALNLKL-YKGQNPCIGVVRQRDNPPRDKYFTKEDIKSLLVTAEN---RLKPIIA 184 Query: 219 LALVTGQRLGDISRMKFSDIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC 276 A++TG R +I +++ D+ + + K+G IPL+ L I ++ Sbjct: 185 FAVLTGCRKMEILNLRWKDVDFYGGIIRITMSKSGKPREIPLANDLRPILLAM------- 237 Query: 277 RDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLS 336 T+ ++ + L +F+K FH R Sbjct: 238 --------------HTNPQDKVFNITVPALKYSFNKLLKKLG-----FEGYCFHTCRHTF 278 Query: 337 ERLYKE---QGLDTQKLLGHKTQQQTDRYHD 364 LY + D Q++LGH T + T RY Sbjct: 279 ASLYMQNDGNITDLQRILGHATIELTMRYSH 309 >UniRef50_A8MGA1 Integrase family protein n=7 Tax=Clostridiaceae RepID=A8MGA1_ALKOO Length = 380 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 70/385 (18%), Positives = 123/385 (31%), Gaps = 50/385 (12%) Query: 19 YSRKVNKVYWRYKHP-VTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 ++ + Y+ Y V GK + + + A A + + Sbjct: 5 VRKRGSSWYYYYDAGSVDGKRNKIERKGGKTKKEALNALNEALTKLGSGYV--------- 55 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDI 136 + K IT ++ + + +LNTY + + L+ G +S V + Sbjct: 56 EPKKITVHEYMTDWVENYIKENR----KLNTYNRYKEIYNRHLKPYIGHLGLSEVKPIHL 111 Query: 137 -AQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI-TRQRL 194 LL E Q + L F A + NP +P+R L Sbjct: 112 DQMLLGEKKKGLSGSTLQNIYGTLNSAFNRAVKLQIMYD--NPLRFIDRPKRDKFVASTL 169 Query: 195 SLEEWKKIFDIADA---THRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQE--- 248 ++EE ++FD D M + + L G R G+++ +++ I + + Sbjct: 170 AVEEIGQLFDALDTSKYNDYIMSLGLKIVLELGLRRGELAGLEWKYIDFNKQIITIANNL 229 Query: 249 ------------KTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA- 295 KT + + +S L + + + + R Y + F Sbjct: 230 VDTYTEVSLTTPKTDERRDLYVSKGLMQLLKQHKVLQTKNRMKYRPHYKENEFNGNVCDF 289 Query: 296 ----ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQ 348 E G V N T+ F+K D FH+ R + L +QG+D Q Sbjct: 290 VMTWEDGTYVHPNYYTVKFNKLLKKVNFDRN----IRFHDLRHTNATLLLQQGIDFKVIQ 345 Query: 349 KLLGHKTQQQTD-RYHDDRGKGWSK 372 LGH T Y + K Sbjct: 346 TRLGHSDINTTLNIYSHVNVEMQKK 370 >UniRef50_D2L4K8 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4K8_9DELT Length = 395 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 71/388 (18%), Positives = 134/388 (34%), Gaps = 39/388 (10%) Query: 1 MAARPRKNNVSVPNLYPLY-----SRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIAT 53 M A+ ++ S P +Y + + K ++Y+ + GK G +A+ A Sbjct: 1 MPAK-KRFKTSYPGVYYVEGQAVATGKPERIYYVM-YRRDGKLIEEKAGRQFQDAMTPAK 58 Query: 54 EANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKA 113 A R + + R A KA W + K + L+T ++ Sbjct: 59 AARIRAERIEGKAPSNNARREAEEAAKAAEVGRWTLAKLWTEYASHKPENHALST--DRS 116 Query: 114 KPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGR-PRMAQVVRSVLIDVFKEAQHYGEV 172 + + ++ G K + V D+ ++ + G+ P+ + V ++ + + G Sbjct: 117 RFETYIKPAFGEKEPAEVLTLDLDRMRSRLLKQGKSPQTVKHVLALFKRLVRFGVKKGLC 176 Query: 173 PPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHR-YMGNAMLLALVTGQRLGDI 230 PR + L +E ++ + N M LA+ TG R G++ Sbjct: 177 DSPDPRKQTISMPRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGEL 236 Query: 231 SRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHF 288 ++++ D+ + +H+ K G IPL+ A V+A S Y+ Sbjct: 237 FKLEWRDVDFERGFIHIRHPKGGKSQKIPLNDAARA-------VLASHPHVENSPYVFPG 289 Query: 289 FRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---- 344 + T+ + ++ + A + H R L G Sbjct: 290 QGGKQRV---------TIQVASNRIKARASLPADFRP---LHGLRHLFASTLASSGQVDL 337 Query: 345 LDTQKLLGHKTQQQTDRYHDDRGKGWSK 372 L QKLL HK+ T RY R + Sbjct: 338 LTLQKLLTHKSPNMTKRYSHLRDDALKQ 365 >UniRef50_D2LSV7 Integrase family protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSV7_BACS4 Length = 391 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 109/369 (29%), Gaps = 52/369 (14%) Query: 35 TGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAI 94 GK + TEA RLAE + + + ++ ++ Sbjct: 24 DGKRIK--KRKTITAKNKTEAKKRLAE-----FVTEIEAGEYIDPSKMKFKDFVKEWETK 76 Query: 95 QDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAA------- 146 + + T + ++ L G K + +I LD Sbjct: 77 YGMK----HLGAKTLETYKSIINNYLIPTFGNKKLDEFKPINIINYLDCLGEDNARKDGK 132 Query: 147 ---GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRL-SLEEWKKI 202 + VL ++F A+ + + NP + K P+ + + + +E ++ Sbjct: 133 EGGLSSSSIKYHYRVLRNIFSRAKEWIIIKN--NPVESVKPPKVTQEKTSVYTKDEVIEL 190 Query: 203 FDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV----------------- 245 ++ + + AL+ G R G+I +++ DI D + Sbjct: 191 LELLKNEPIHQKLMVTAALMAGLRRGEILGLQWDDIDLDAGTISINHSLQYTKEKGYVLG 250 Query: 246 IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANT 305 + S + + + L + ++ R A + + + G Sbjct: 251 PPKNNSSIRKVSIPMYLVEEFKKYKRTKSKERIQAAELWEGGKYFYVFSSWNGKPFYPTA 310 Query: 306 LTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTD-R 361 + + + + FH+ R + L +G + LGH + T Sbjct: 311 VGTWWRRFLKRKGFKYIR-----FHDLRHTAATLLINEGEHAKTISARLGHADIKTTMNI 365 Query: 362 Y-HDDRGKG 369 Y H R Sbjct: 366 YGHYLREAD 374 >UniRef50_Q1Q549 Similar to site-specific tyrosine recombinase n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q549_9BACT Length = 351 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 116/360 (32%), Gaps = 43/360 (11%) Query: 20 SRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 ++ + +H +L + + +A + EA R + +G Sbjct: 2 YKRDGIWWTCIRHRGRKIQRSL-ETKNKKLAESIEAKLRTELIEGKYFDKY-------EG 53 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQL 139 T ++R+ + LN K L G + A+ + + Sbjct: 54 DLKTFKDLMERFMKEHAP-----KVSLNMQKSYTTSAKHLLSFFGDLSLLAITPKKVNDY 108 Query: 140 LDEYIAAGR-PRMAQVVRSVLIDVFKEAQ-HYGEVPPGYNPALATKQPRRKITRQR-LSL 196 G+ P ++L F A + + NPA + + R R LS Sbjct: 109 KVSRKNLGKKPATINKELAMLSKAFCLAVKEWEWIRD--NPASKISKEKEANERDRWLSD 166 Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQEKTGSKI 254 +E K++ + + ++ + ++ L TG R ++ + + D++ + + + K G Sbjct: 167 DEEKRLL---ENSPEWLSDIIVFDLHTGLRQDELLSLTWDRVDLFRKVIIIQESKNGKPR 223 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 IPL+ I V + + ++ L F A+ Sbjct: 224 TIPLNQISLDILMEKTKVRS------------LKGDFVFPSSVMTKMNRRNLVRAFDIAK 271 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWS 371 + A I FH+ R ++G+D KLLGH T RY + Sbjct: 272 EKASI-----QNFHFHDVRHCFATRLAQRGVDIYRISKLLGHLNITMTQRYAHHCPESLR 326 >UniRef50_B9BDB4 Putative integrase n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BDB4_9BURK Length = 359 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 65/385 (16%), Positives = 135/385 (35%), Gaps = 45/385 (11%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M + + N + +P+ K Y+ ++ G++ LGT+ AEA N Sbjct: 1 MGRKRKSNELGLPD---RVYPKHGAFYYVHRD---GRWERLGTDLAEAKRRGNLYN---- 50 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 T S +LD + + R++ G ++ TY+ + V L+ Sbjct: 51 ---------------DPDSTYGTMSYFLDEFVVHCEKRVQLGYLKPRTYEDYKRDVEPLK 95 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 G ++V+ + + LD GRP ++ L F G+ NP L Sbjct: 96 VYFGRMTPASVEPKHVGAYLDLCAENGRPVRGNREKACLSSCFTWLIRTGKGSVKLNPCL 155 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 K+ + + + +E++ ++ +A + + L T QR DI ++I Sbjct: 156 GVKRNKETKRERYVEHDEYRAVWAVAA---PQVRGLLDLTYRTLQRPEDIIAWGPANIVQ 212 Query: 241 DH---------LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 + Q KTG+ + I ++ ++AI L+ + ++ Sbjct: 213 KREPDGSVRRVIRNDQGKTGAIVDIAVTPEIDAILNYLKAT--GPTPGPGTTWIRKRNGE 270 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQ 348 + + ++AR+ + + ++ ++ G+ Q Sbjct: 271 PYSYSGLTSMLHRYIAK-VNRARETKGLTPFQS--FGPYDMKAKGATDMWLSGVPLERIQ 327 Query: 349 KLLGHKTQQQTDRYHDDRGKGWSKV 373 L GH + T+ Y R +G + Sbjct: 328 VLCGHDSVTTTEIYVKCRWRGTVEP 352 >UniRef50_C0X0P7 Phage integrase family site specific recombinase n=4 Tax=Enterococcus faecalis RepID=C0X0P7_ENTFA Length = 369 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 67/359 (18%), Positives = 135/359 (37%), Gaps = 31/359 (8%) Query: 22 KVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKA 81 K W + P K + E +L + Q R A Sbjct: 10 KRKDGRWEGRFPRGRKIDGKLKYGYIYGSTYQEVRQKLYVAKANQQTIYQSRGQG----A 65 Query: 82 ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIAQLL 140 T + W++++ I +++L+T+ + + + + + G ++ +D + +L+ Sbjct: 66 FTLNEWIEQWLVIVKK-----EVKLSTFASYSYKLSNYVLKTMGDSALNEIDDLRLNKLV 120 Query: 141 DEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEE 198 ++ IA G V+ +L A + NP P+ K R L +EE Sbjct: 121 EDLIAQGLSKSTICVIFGILSRALNHAVKAKHLK--SNPCSTISLPKPKRRHIRALDIEE 178 Query: 199 WKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPL 258 KK+ ++A + G ++++AL TG R+G+++ +++ DI + + T ++++ Sbjct: 179 QKKLENVAYKNPQQQGLSVIVALHTGLRIGELAALRWEDINFKKDTIHVKHTFQRVSVSS 238 Query: 259 SLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG--------AQVKANTLTMNF 310 + + + R +S + + + + +G + LT F Sbjct: 239 FGESTQLYYDCTKTINSERIIPMSNTVKNALKCQKEHSQGKFVFSRNNKPCEPRLLTYYF 298 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQ---GLDTQKLLGHKTQQQT-DRYHDD 365 K RD ++D FH+ R E + LLGH + Q T D Y D Sbjct: 299 HKLRDKVQLD-----KVHFHQLRHTFATRCLESTSDIVSVSALLGHSSTQMTLDIYADS 352 >UniRef50_B5K270 Integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5K270_9RHOB Length = 389 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 54/373 (14%), Positives = 121/373 (32%), Gaps = 39/373 (10%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHAL--GTNEAEAIAIATEANTRL 59 R + L + K ++ YK + G+ L G + A + Sbjct: 22 GKRDYYYDGKEKGLVLAVTPAGGKSFYLYKR-IDGRPERLLLGKFPDLTVENARKLAASA 80 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + + S +T Y K + ++ + V+ Sbjct: 81 KGEIAMGENP--QKAKRSIRDEMTFGALFTEYLE------KHSKVHKRSWAYDEREVNKF 132 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + + IS+++ ++ +L + A + + +F +A +G G NPA Sbjct: 133 LKHWFKRKISSIEKPEVERLHAKVGKENGLYQANRLLERIRSIFSKATDWGW--NGVNPA 190 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYM-GNAMLLALVTGQRLGDISRMKFSDI 238 K+ R K + L EE + F+ + + +++L+ G R + M++ +I Sbjct: 191 TGIKKYREKSRDRFLQPEELPRFFEALSNEPNEVARDFFMISLLAGARKSNTLAMRWDEI 250 Query: 239 --WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 + + + K + LS + +++ + +++S ++ ++ Sbjct: 251 SFHGETWRIARTKNDDPQIVHLSPQAM-------EILKERKLHSLSPWVFPGDGASGHLA 303 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGH 353 + + A I + H+ R G + K LGH Sbjct: 304 DPK--------KAWMRILKEAGI-----ADLRIHDLRRTLGSWQAATGANSYIIGKSLGH 350 Query: 354 KTQQQTDRYHDDR 366 ++QQ T Y Sbjct: 351 RSQQSTAVYARLN 363 >UniRef50_B9MR26 Integrase family protein n=2 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR26_ANATD Length = 400 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 67/398 (16%), Positives = 123/398 (30%), Gaps = 59/398 (14%) Query: 1 MAARPRKNNVSVPNLYPLYSR--KVNKVYWRYKHPVTGKFHALGTNEAE-AIAIATEANT 57 M + +K + ++Y R ++ + + G E A IA N Sbjct: 1 MPTKTKKRGNNEGSIYKRKDGLWCGQITIGRDENGRQKRQYFYGKTRQEVAEKIAKTLND 60 Query: 58 RLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV- 116 T WL+ + K +R +T+K + Sbjct: 61 LA-------------NGVYVDPAKTTLKDWLNTWLWEY----KKQTLRPSTFKDYLCYIE 103 Query: 117 SLLRERAGMKLISAVDVRDIAQLLD-EYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG 175 + G + + + L + +Y + + +VL +A G V Sbjct: 104 RHINPAIGHYKLKDLRPEHLQALYNAKYQEGLSISTIKQIHTVLHSALDQALKNGLVNRN 163 Query: 176 YNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 + A + + K + LSLEE ++ + + A L+ L +G R+G++ +++ Sbjct: 164 VSEATTLPKGKPKREIRILSLEEQQRFIAALE--GERLKTAFLVELASGLRIGELLALRW 221 Query: 236 SDI--WDDHLHVIQE----------------------KTGS-KIAIPLSLRLNAINWSLR 270 D+ D ++ V + KT + K +PL + R Sbjct: 222 KDVNFKDGYIEVRRSLQRVRIFDGGNSKKTALAFQEPKTEAGKRIVPLPPVIIEELKQHR 281 Query: 271 DVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFH 330 + A + Y + E G + F + R+ A +D FH Sbjct: 282 KKQLEEKLKAGALYEDNDL--VFATELGTPIDPRNFERLFYRIREKAGLDKS----VNFH 335 Query: 331 EQRSLSERLYKEQGLD---TQKLLGHKTQQQTD-RYHD 364 R E Q+LLGHK T Y Sbjct: 336 ALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSH 373 >UniRef50_A3WDG1 Site-specific recombinase, phage integrase family protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WDG1_9SPHN Length = 392 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 63/377 (16%), Positives = 112/377 (29%), Gaps = 38/377 (10%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKF--HALGTNEAEAIAIATEANTRL 59 R K + +P K + + + GK +G IA + RL Sbjct: 23 GKRRTKFDYVLPGFGERIHPSGKKS-FVLQRTMGGKQRLITIGDAAILTERIAKDVARRL 81 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + ++ K T ++L Y + K + + + + L Sbjct: 82 ILRIELGQNPAEEKQRGKK--TPTYVSFLRHYWEVAAPTWKPSTLEI--HDIYRRT--HL 135 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 K I + D + + P A +L +F +A+ +G +P NP Sbjct: 136 EHAFAGKFIDEIGHADAVRWHASLTRSAGPGAANRAMEILKAMFGKAEAWGYLPEHSNPF 195 Query: 180 LATKQPRRKITRQRLSLEEWKKI---FDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 K+ R + + LS E ++ A + L +TG R G+I + + Sbjct: 196 RGVKRNRGRKIERFLSENEMARLGYALARHRAAKPNEVAVISLLALTGCRRGEILNLTWG 255 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 ++ L + KTG R+ + R V+ R + F Sbjct: 256 EVQGRKLKLTDSKTG--------PRVVWLGKEARAVIDRLPRKRPHECVFQFDVLP---- 303 Query: 297 RGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGH 353 + + + R A I+ H+ R L +LLGH Sbjct: 304 ------VSAIEWFWRMLRVEAGIED-----VRLHDLRHNFASLAARSSETLPMIGRLLGH 352 Query: 354 KTQQQTDRYHDDRGKGW 370 T RY Sbjct: 353 NNSSTTARYAHLDDGHL 369 >UniRef50_A7JSJ8 Possible integrase/recombinase n=2 Tax=Mannheimia haemolytica RepID=A7JSJ8_PASHA Length = 351 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 143/374 (38%), Gaps = 55/374 (14%) Query: 3 ARPRK--NNVSVPNLYPL-YSRKVNKV--YWRYKHPVTGK-FHALGTNEAEAIAIATEAN 56 RPRK N NL P +RK K YW Y+ GK +LGTN EA A + N Sbjct: 2 GRPRKQQNRYLPENLRPKTVTRKSGKTVIYWLYR--THGKTEISLGTNRNEAFIKAAQLN 59 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 Q R IT RY+ + K +T + + Sbjct: 60 IERESQTAR----------------ITFGLVAKRYRDEVIPQKK-----ASTAQTDLCKI 98 Query: 117 SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 L + + + I + + P A S+ +++ A+ +G Sbjct: 99 KNLLLFFNDAPLEEITPQHIREYM--IWRKDTPGSANNEFSMFSHIWQYAREWGY-TNLP 155 Query: 177 NPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 +P + K+ + + ++ ++++AD M + M LA +TGQR D+ ++ Sbjct: 156 SPNIGMKRYPIRKREIYVENNIFQMVYEVADQD---MRDLMDLAYITGQRPVDLVNIRKE 212 Query: 237 DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 I+D +LH++Q+KT +K+ I + + L D++ + A +L + Sbjct: 213 HIFDGYLHIVQQKTQAKLRIEIVGK-------LADIIQDRLEKATGTHLF-------STK 258 Query: 297 RGAQVKANTLTMNFSKARDLARIDWG----EGSPATFHEQRSLSERL-YKEQGLDTQK-L 350 +G ++ A L F+ R+ A + E F + R+ S G + + Sbjct: 259 KGEKLTARKLGKRFTYIREQAVKNNPEYANEIMAFQFRDLRAKSGTDKALSLGEEAARQQ 318 Query: 351 LGHKTQQQTDRYHD 364 LGH + Q T Y Sbjct: 319 LGHTSVQMTKTYIR 332 >UniRef50_Q2NTS7 Phage integrase n=25 Tax=Enterobacteriaceae RepID=Q2NTS7_SODGM Length = 338 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 100/265 (37%), Gaps = 16/265 (6%) Query: 104 IRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVF 163 + T K + + L G V + I + +D+ A + L V+ Sbjct: 79 LAAETQKDYKRNSTRLLPVFGKMHPDNVKPQHIRKYMDKRGTK-SKTQANHEKRFLSRVY 137 Query: 164 KEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVT 223 + G NP +Q + + + ++ E++ ++ +A + AM +A + Sbjct: 138 RWGYERGI--TKGNPCSGVRQFKEEARDRYITDAEYEALYSVA---PATVRIAMEIAYLC 192 Query: 224 GQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSA 283 R D+ + S + DD + + Q KTG K ++ A L+ V+ S Sbjct: 193 CARQSDVLSLTKSQLLDDGIFICQGKTGKK-------QIKAWTERLKKVIDLADSLPASQ 245 Query: 284 YLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGS-PATFHEQRSLSERLYKE 342 + + G + + +++KAR A + E + TFH+ ++ + Sbjct: 246 GVNSIY--VLHQPNGNRYTRDGFNSSWAKARAKASVLHPELTFDFTFHDLKAKGISDLEG 303 Query: 343 QGLDTQKLLGHKTQQQTDRYHDDRG 367 + Q + GHK+ QT RY+ Sbjct: 304 SLSEKQAISGHKSIGQTARYNRKTE 328 >UniRef50_A5CCP8 Phage-related integrase n=25 Tax=Orientia tsutsugamushi RepID=A5CCP8_ORITB Length = 414 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 118/333 (35%), Gaps = 42/333 (12%) Query: 46 AEAIAIATEANTRLAEQRTRQILAISDRIAT---------SKGKAITTSTWLDRYQAIQD 96 EA IA E T +A + + +I K IT +Y Sbjct: 78 KEARKIARELKTLMANGIDPRAVKHQQQIEENENRIKERERKANDITFKELCYKYIEEYA 137 Query: 97 DRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVR 156 +K+ A V + K IS + + DI + ++ G+ A + Sbjct: 138 KIYTIN------WKENADRVHTYAQALYEKKISKIRMSDIEPIFNDISKEGKYATANALL 191 Query: 157 SVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDI-ADATHRYMGN 215 + L +F +A +G + NP L +Q + + +RLS +E + + + + Sbjct: 192 ATLRTIFNKAIKWGLIEN--NPTLGIEQHKLQARERRLSYDEMGRFLQVLCGEASPLIRD 249 Query: 216 AMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVV 273 LLAL TG R ++ M++ +I + H+ + K G IPL+ +++ Sbjct: 250 FALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAM-------EIL 302 Query: 274 ARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR 333 + + S +++ +S +E G NT + + A I H+ R Sbjct: 303 QARKLISTSKWVLP----SSTSESGHLSHPNT---AWKIICEKASIKN-----FRIHDLR 350 Query: 334 SLSERLYKEQGLDTQKL---LGHKTQQQTDRYH 363 + G + + L H T Y Sbjct: 351 RTFASCMGDAGESQRTISIALNHINPNSTIPYT 383 >UniRef50_A4ILC8 DNA integration/recombination/invertion protein n=1 Tax=Geobacillus thermodenitrificans NG80-2 RepID=A4ILC8_GEOTN Length = 387 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 47/386 (12%), Positives = 120/386 (31%), Gaps = 53/386 (13%) Query: 19 YSRKVNKVY---WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIA 75 ++ Y + GK + + EA LA+ +A + Sbjct: 5 IEKRGKNSYRLVYSMGFDANGKRIK--RTKTVHVKTKKEAEKELAK-----FIAEIEAGE 57 Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVR 134 K ++ S ++ ++ ++ + T++ ++ + + G ++ + Sbjct: 58 YIKPAKMSLSDFIQLWRDNYAEK----QLSPKTFETYNNYINTRIIPQLGHLQLADIKPI 113 Query: 135 DIAQLLDEYIAA----------GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 + + L+ R +L ++F A + + NPA + Sbjct: 114 HLIRFLNNLKKDETRLDGKKGSLSEATINYYRRILKNIFNRAVEWKFLQ--VNPAEKLPK 171 Query: 185 PRRKITRQRLSLE-EWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW---- 239 + I + + E E + + + LAL G R G++ +++ DI Sbjct: 172 EKEDIGKGDVYDENETRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWEDIDLESG 231 Query: 240 ------------DDHLHVIQEKTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLV 286 + + + K+ K I + + + ++V R ++ + Sbjct: 232 TLYVKHSLSYTKEKGFFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEKLQDEWEG 291 Query: 287 HFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD 346 + G + + + + + H+ R S + G++ Sbjct: 292 GNYNFVFATWNGKPHHHSYPRTKWERFLKRNNLRYIR-----PHDLRHTSATIMLNNGVN 346 Query: 347 ---TQKLLGHKTQQQTDRYHDDRGKG 369 + LGH + + T ++ R K Sbjct: 347 YKTVSERLGHSSTRITFDFYVHRTKE 372 >UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodobacter sphaeroides RepID=Q3J1E6_RHOS4 Length = 413 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 72/387 (18%), Positives = 126/387 (32%), Gaps = 27/387 (6%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNE----AEAIAIATEANT 57 R + LY + K + RY+H + +LG A A A + Sbjct: 16 KRQEIPDSLCVGLYLIVQPTGKKGWQVRYRHGGVHRRMSLGAFPVLSLAGARERARQTLA 75 Query: 58 RLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 + + + G T + ++ +LKSG + + Sbjct: 76 AASAGTDPAAEVKAAKAPKLDGDRDKIKTLIGQFDKRHLSKLKSGAVVRRELE------R 129 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + G + + + RD+ LLD +GR A VR+ L F + + Sbjct: 130 HVVSAWGERDVHQIGKRDVIDLLDGIADSGRVVTANRVRAYLAKFFGWCVERDIL--ATS 187 Query: 178 PALATKQP-RRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS 236 PA K + + L+ +E + + +A G + L+TGQRL ++++M S Sbjct: 188 PAAGVKPAGKETSRARVLTDDEIRWFWTACEAEGFPWGPFGKVLLLTGQRLNEVAQMTDS 247 Query: 237 DIWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 +I D H+ + K G +PL+ + A D V R D + + Sbjct: 248 EIRGDLWHLTADRTKNGRAHDVPLTGAVRAAL----DEVERVTDEEGRVRFIFTTTGRTP 303 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLL 351 G L R + E TFH+ R + G+ + +L Sbjct: 304 VS-GFFKARAVLAEAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMARLGIPVRVTEAVL 362 Query: 352 GHKTQQ---QTDRYHDDRGKGWSKVAL 375 H + Y + AL Sbjct: 363 NHVSGTGGGIVAVYQRHDYADEKRQAL 389 >UniRef50_A5N1F6 Integrase-related protein n=3 Tax=Clostridia RepID=A5N1F6_CLOK5 Length = 416 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 56/355 (15%), Positives = 112/355 (31%), Gaps = 53/355 (14%) Query: 56 NTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKP 115 A ++ ++ IT ++ ++ + ++ T + + Sbjct: 43 QLEEANKQWVLFKDEIEKGIYLDSGKITFEEFIKKWLKDYAE----AELAPKTLYRYKEL 98 Query: 116 V-SLLRERAGMKLISAVDVRDIAQLLDEYIAAG----------RPRMAQVVRSVLIDVFK 164 + + + G ++ + I + G R ++ + Sbjct: 99 LYTRIIPALGHIKLNKLQPTHITEFYSNLREDGIRNDGKPGGLSERTILHHHRLISSILA 158 Query: 165 EAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVT 223 A +G + NPAL K P+ + R ++EE + + + + LA+ Sbjct: 159 TAIQWGFILN--NPALRLKAPKVEKKEARHFNIEETAYVLQLIENEPIKYKTMITLAIYG 216 Query: 224 GQRLGDISRMKFSDIWDDHLHVIQ----------------EKTGSKIAIPLSLRLNAINW 267 G R G+++ + +SDI D + KT + I + + + + Sbjct: 217 GMREGELTALTWSDINFDDCTIKINKSLQHLPGRDTFIKSTKTETTRLISIPISVMTLLK 276 Query: 268 SLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR---IDWGEG 324 + + + L H + A G + +T++ F K I+ + Sbjct: 277 EYKRWQNTEKLKLGN--LWHDSDALFTATDGKSIFPSTISKWFLKFIRKHNESIINDDKI 334 Query: 325 SP----------ATFHEQRSLSERLYKEQGLD---TQKLLGHK-TQQQTDRYHDD 365 P FH R S L QG+D K LGH T TD Y Sbjct: 335 PPKDKSKYLLKEVNFHGLRHTSATLLINQGVDITTVSKRLGHARTSTTTDIYSHS 389 >UniRef50_B6R5P1 Phage integrase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5P1_9RHOB Length = 365 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 64/360 (17%), Positives = 113/360 (31%), Gaps = 52/360 (14%) Query: 40 ALGTNEA-EAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDR 98 ++G + + A R+ ++ R ++ K +T + D Y Sbjct: 18 SIGRHGSPWTTEEARAEAKRVLGDVAHGGDPMAAR--QARRKDLTVAELCDLYLEEGTAT 75 Query: 99 LKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPR-------- 150 K+ I K + ++ G L+S + + LL + PR Sbjct: 76 KKASTIA----TDKGRIERHIKPVIGDLLVSDIKANHVRTLLKKVAEGNLPREGVGPVAD 131 Query: 151 ------MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFD 204 A +L +F A G NP K+ + ++ L+ E ++F+ Sbjct: 132 KLGGKGTASRTVGLLGGIFSFANELGYRTD--NPVHGVKRFPDQKNQRYLTQSELTRLFE 189 Query: 205 IADA-----THRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQEKTGSKIAIP 257 + + + + L +TG R G+I ++K+S++ LH KTG K +IP Sbjct: 190 LLEEIEADGANPKAVKIIKLLALTGARRGEIEQLKWSEVFLEQGTLHFEDSKTGQK-SIP 248 Query: 258 LSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLA 317 +S + + A S Y+ R T + R Sbjct: 249 ISAAVIGLLRE-----AEQERCIDSPYVFPSERGDGF--------YVGATKVWRDLRTKF 295 Query: 318 RIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 H+ R L G LLGHK T RY ++ Sbjct: 296 G-----DEKLRMHDLRHSFASLAVAGGASLPMIGALLGHKDTATTQRYAHLSADPLRSIS 350 >UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM9_9DELT Length = 409 Score = 187 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 69/386 (17%), Positives = 122/386 (31%), Gaps = 40/386 (10%) Query: 4 RPRKNNVSVP---NLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 RP+ + K + + Y K LG A + A Sbjct: 12 RPQSKKYYLREANGFSVRIMPSGAKTWLFIYTFDGKRKEMNLGHYPAVTLEAARRKYRAA 71 Query: 60 AE--QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 + ++ +A+ + + S +D Y R K + K +A Sbjct: 72 FDLFEQGNDPVAMHLEKKEERRRTPFLSDLVDEYINKHAMRFKR-----SWAKDQAILNR 126 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + G + + RD+ LL++ + G P MA ++ +F A + + Sbjct: 127 DVVPAWGQRKAVDISKRDVILLLEKIVDRGSPGMANNCFQIIRKMFNFAVDREILE--IS 184 Query: 178 PALATKQPRRKITRQR-LSLEEWKKIFDIADAT--HRYMGNAMLLALVTGQRLGDISRMK 234 P K P K+ R R LS EE + ++ + + A+ L LVT QR G++ M Sbjct: 185 PCTGVKMPAPKMARDRVLSEEEIRVLWSGLERAKISHEVQRAIKLILVTAQRPGEVMGMD 244 Query: 235 FSDIWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 FS+I + + K G + L+ + F S Sbjct: 245 FSEIEGRWWTIPADRAKNGKAHRVYLTDTAL--------------ELIGENTGGFVFPSP 290 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQK 349 E + +N +T+ + +D T H+ R + E G Sbjct: 291 RHRENPRPIGSNAMTVAHRRNKDK-----IPLEDFTPHDLRRTAATFMAEMGTMDEVIDA 345 Query: 350 LLGHKTQQQTDRYHDDRGKGWSKVAL 375 +L H Y+ R + L Sbjct: 346 ILNHSKMGVIRVYNQYRYDTEKQATL 371 >UniRef50_Q4ZSI8 Phage integrase:Phage integrase, N-terminal SAM-like n=41 Tax=root RepID=Q4ZSI8_PSEU2 Length = 344 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 71/371 (19%), Positives = 128/371 (34%), Gaps = 41/371 (11%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M +P N V L R Y+ K LG++ AI Sbjct: 1 MGRKP-INPDIVTRLRKRKQRSGVVYYYYDIGGSPRKEIPLGSDYGMAIVE------YAK 53 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 +++R A+ ++ +T + ++Y T K A+ + L Sbjct: 54 LEKSRTSSALVQQV-------LTFAYVAEKYMIEVVPTK-----SPATQKDNARELKQLL 101 Query: 121 ERAGM--KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + + A++ + + Q L + P A +++L ++ A G NP Sbjct: 102 KFFDDPPAPLEAIEPQHVVQYLRQRGKT-APVRANREKALLSAIWNFAMSAGY-TALANP 159 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 K + + E + ++ A+ + +A+ L +TGQR+ D +M DI Sbjct: 160 CAGVKGHKEVGRDHYIEDEMFALVYSHAEQ---PLRDALDLFYLTGQRIADTLKMDERDI 216 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 D L V Q KT +K I ++ L + + R + G Sbjct: 217 RDGRLWVQQGKTNAKRRIEITGELKVVIDRIMTRKEGHRIR---------TSRLIVMDNG 267 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGHKT 355 + ++ L F AR+ A ++ GE + R+ + E D + LGH T Sbjct: 268 QPMTSSMLRERFDAAREAAGVEKGE---FQMRDLRAKAGTDKAESSGDILQARDQLGHTT 324 Query: 356 QQQTDRYHDDR 366 T+ Y R Sbjct: 325 VVMTENYIRKR 335 >UniRef50_Q3Z840 Site-specific recombinase, phage integrase family n=6 Tax=Bacteria RepID=Q3Z840_DEHE1 Length = 435 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 64/362 (17%), Positives = 118/362 (32%), Gaps = 48/362 (13%) Query: 31 KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDR 90 + P TGK A +++ R++L D K ++ WL+ Sbjct: 21 RDPATGKRRQSWHTIKGTKKEA--------DKKLRELLTAQDNGIFVKQSKLSFGEWLEN 72 Query: 91 YQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAG--- 147 + D +K + + + G +++ + + I + G Sbjct: 73 W---CRDYVKIQTTQRTFESYYQNIIGHIEPALGKVILTELTPQIIQAYYARQLEKGRAD 129 Query: 148 -----RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL-EEWKK 201 R ++ K+A G + NPA A + PR + T + +E + Sbjct: 130 GKGGLSARSVLYQHRIISKCLKQATKLGLI--MRNPADAVEPPRPRKTAISVPDKDELPR 187 Query: 202 IFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTG---------- 251 + D + T Y+ L L G R G+ +++ DI + +T Sbjct: 188 LLDAFETTPYYV--FYCLLLYCGMRRGEALALRWKDIDLKQDTIQIAETAFTLRSGEYVI 245 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHF-----FRSTSQAERGAQVKANTL 306 + P S R I +++ ++ + + Y G + NT+ Sbjct: 246 KEPKTPHSRRCIDIPPTMKLLLLEYKADQTAYYAKLGVELGLHDFVFTRPNGEPLNPNTV 305 Query: 307 TMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQT-DRY 362 T F KA A D H+ R L L + G+ + + LGH + T D Y Sbjct: 306 THTFLKAVRKAGFD-----KLRLHDLRHLHATLMLQAGIHPKIVSERLGHASINITLDTY 360 Query: 363 HD 364 Sbjct: 361 SH 362 >UniRef50_B5YSQ6 Site-specific recombinase, phage integrase family n=58 Tax=root RepID=B5YSQ6_ECO5E Length = 359 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 69/366 (18%), Positives = 133/366 (36%), Gaps = 50/366 (13%) Query: 1 MAARPR--KNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTR 58 M R + ++ P +YP Y +K P + + L A E Sbjct: 1 MGRRRKNPEHEKLPPKVYP-------NKYSVWK-PTSRESVTLT---------AIEDGLA 43 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 ++ + + DR A+T +++ A ++ T K + Sbjct: 44 ALWKKYEETVNHRDR-------AMTFGRLWEKFLASAYYS----ELSPRTQKDYLQHQKK 92 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 L G L +V I + +D+ A +S + V+ G V NP Sbjct: 93 LLAVFGKVLADSVKPEHIRRYMDKRGEQ-SKTQANHEKSSMSRVYSWGYERGYVK--ANP 149 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 + + K + ++ +E++ + +A + AM +A + R+ D+ +K+ I Sbjct: 150 CAGVSKFKAKNRERYVTDKEYQAVLSVA---PLPVFIAMEIAYLCAARVSDVLSLKWEQI 206 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERG 298 +D + + Q KTG K ++ A + L+ + + + SAY++ +G Sbjct: 207 GNDGIFIQQGKTGKK-------QIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKG 259 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQ 358 + +AR+ A G + TFH+ ++ Y+ D Q GHKT+ Q Sbjct: 260 -------FNEMWVEARNHAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQ 312 Query: 359 TDRYHD 364 Y Sbjct: 313 VLIYDR 318 >UniRef50_B7GVF6 Tyrosine recombinase xerC n=1 Tax=Acinetobacter baumannii AB307-0294 RepID=B7GVF6_ACIB3 Length = 398 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 66/385 (17%), Positives = 126/385 (32%), Gaps = 48/385 (12%) Query: 4 RPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHA--LGTNEAEAIAIATEANTRLAE 61 R + ++ V L + + + + + GK + LGT E + Sbjct: 23 RKYRPDLKVTGLRFVVTVQHVRT--LARLTFQGKKISKSLGTFSHADFDQNLEKLISQMQ 80 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLR 120 + ++I A T + + S ++R +YK + + Sbjct: 81 RFHQRIAQGLAPFEDEVKPANTLREFA------LTIYMPSAEMRKKSYKDDEAKLRMHIL 134 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 G ++ + +LL E + G VR++L +F A ++ + NP Sbjct: 135 PVIGDYPFEDINAGMLNKLLTELRSKGLTNASINRVRALLSVMFNMAINHDLIQ--VNPV 192 Query: 180 LATKQPRRKIT-RQRLSLEEWKKIFDIADATHRY------MGNAMLLALVTGQRLGDISR 232 + + + L+ +E K++ D+ +A H++ + + L+TG R + Sbjct: 193 SKVSKFKENNQIERYLNAQEIKRLMDVLNAPHQHGIDNLIIVAIVKFLLLTGVRKREAMD 252 Query: 233 MKFSDIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFR 290 MK++D+ + + K+G I L+ AI SL Sbjct: 253 MKWTDVDLTTGVWLLGENKSGKARRITLNQDALAILHSLPQ---------------QHAF 297 Query: 291 STSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---T 347 + G N + F A I H+ R + G Sbjct: 298 IFANPMTGQPF--NDMRKTFQSIMKAASIRNIR-----IHDLRHNFASIAVNSGQSLYVV 350 Query: 348 QKLLGHKTQQQTDRYHDDRGKGWSK 372 Q LLGH + Q T RY + + Sbjct: 351 QHLLGHASPQTTQRYAHLQSSTLKQ 375 >UniRef50_Q2W5Z6 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Z6_MAGSA Length = 316 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 149/295 (50%), Gaps = 18/295 (6%) Query: 1 MAARPR-KNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 MA R K NLY + Y+ +++P+ GK H LG ++A A A EAN + Sbjct: 1 MARRRSIKRRGWPENLYET------RGYFIWRNPIDGKKHGLGRDKASASLQAIEANLHI 54 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 A T+ L DR+ ++ + W RY I +DR + T ++ ++ + + Sbjct: 55 AGMLTKSRLI--DRVLGGDDQS--VAAWCGRYAKILEDR----TLADETRREFSRRIGKI 106 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 +E G + V + IA L + G+ RMAQ +RS+++D+F+EA G NP Sbjct: 107 KETLGSHQVDKVTTKHIADFLRPWTDDGKKRMAQAMRSLMLDMFREAVAAGWAKQ--NPV 164 Query: 180 LATKQPRRKITRQRLSLEEWKKIFD-IADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 T+ PR + R RL+L+ + I ++G +M LALVT QR D++ M D+ Sbjct: 165 AVTRAPRVAVARARLTLDMFVAIHAVALRDQSPWVGRSMELALVTAQRREDVALMGRKDM 224 Query: 239 WDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS 293 + L + QEKTG++++IP LRL A+NWS+ DV+ RC D ++ VH Sbjct: 225 REGRLWITQEKTGARVSIPADLRLQAVNWSVGDVIQRCHDKILAPTFVHHSAHPC 279 >UniRef50_UPI0001BC6CC7 phage-related integrase n=1 Tax=Vibrio parahaemolyticus AQ4037 RepID=UPI0001BC6CC7 Length = 385 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 64/386 (16%), Positives = 127/386 (32%), Gaps = 49/386 (12%) Query: 3 ARPRKNNVSV-------PNLYPLYSRKVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIAT 53 RP K V P L L + K + W + GK + + GT A Sbjct: 17 PRPAKGEQGVEYPWKKNPRLRVLVTAKS--MRWIVRLGWKGKRYYESFGTYPEMKFAE-- 72 Query: 54 EANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKA 113 Q Q +A A KG +T + D + ++ T+ Sbjct: 73 ------FNQLAYQFIADVQSGAYQKGARLTVQQFFDD---VVLPYSRNHHRDSKTF---L 120 Query: 114 KPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVP 173 + G + ++ V RD+ + L+ + L +F A + + Sbjct: 121 SRSKRVMAAFGKERVTDVTRRDVERFLNSLTD-LSHASINRYHAFLSKLFSMAVEHEII- 178 Query: 174 PGYNPALATKQPRRKITRQR-LSLEEWKKI-FDIADATHRYMGNAMLLALVTGQRLGDIS 231 +P K+ + R LS +E + + + +A++L+L+TG R+G++ Sbjct: 179 -DKSPVKGVKKRVENNAKDRVLSSKEMESFCRNACAEPNFLHASALMLSLLTGMRIGNVI 237 Query: 232 RMKFSDIWDD--HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 + S + DD + K+G I S + ++ +C + + ++ Sbjct: 238 SLTRSMLADDLSSALLPMTKSGKSQRIYFSEPA-------KRLIRKCLKVSFNDWVFPSL 290 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT-- 347 + + + + + + +P T H+ R D Sbjct: 291 NNRGEHIAYPRACMERIQQAMKQ-------EGCLDAPFTIHDLRRTYATQMLIATNDIRL 343 Query: 348 -QKLLGHKTQQQTDRYHDDRGKGWSK 372 Q+ LGH T+RY + ++ Sbjct: 344 AQQSLGHSNVNVTERYAYYQNTHLAQ 369 >UniRef50_B1FJ84 Integrase family protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FJ84_9BURK Length = 332 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 60/342 (17%), Positives = 119/342 (34%), Gaps = 38/342 (11%) Query: 38 FHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDD 97 L A++ + T+ + + + T+ + T L +Y Sbjct: 19 KVRLKGFPAQSKSFPTKVQAEDWARAVETEMRRGTFVDTAAARETTLGDLLQKYAERVSP 78 Query: 98 RLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRS 157 KSG + +L+ + + +A+ DE + + + Sbjct: 79 TKKSGAGEAKRIQS------MLKWFLCKYAVVNITPAVLAEWRDERLQSVSGSTVNRELN 132 Query: 158 VLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL--EEWKKIFDIADATHRYMGN 215 +L VF A ++ NP ++P+ R R + EE +++ A ++++ Sbjct: 133 LLSHVFSTAMIEWDIHLPVNPVSRIRRPKHNKPRNRRTEGGEESLLLYECRKARNKHLYP 192 Query: 216 AMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVV 273 A+LLA+ TG R ++ +++ +I L + K G A+ LS R + Sbjct: 193 AVLLAIETGMRRSEVVGIEWPNIDLKRRVLWLPDSKNGEGRAVALSTRAAQALAA----- 247 Query: 274 ARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR 333 G + + + + +AR A+ID FH+ R Sbjct: 248 -------------IATDRNGPVFPG--LTVDAIKCAYRRARKRAKID-----GLRFHDLR 287 Query: 334 SLSERLYKEQG---LDTQKLLGHKTQQQTDRYHDDRGKGWSK 372 + E+G ++ + GHKT RY R + +K Sbjct: 288 HEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHLRAEDLAK 329 >UniRef50_B7IY65 DNA integration/recombination/invertion protein n=35 Tax=Bacillus RepID=B7IY65_BACC2 Length = 369 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 69/369 (18%), Positives = 129/369 (34%), Gaps = 49/369 (13%) Query: 21 RKVNKVYWRYKH----PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 RK Y P TGK + + A + + + + Sbjct: 6 RKRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA--------QADVAKKITELNEGTF 57 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRD 135 + +T +L+ + I KS I+ +T+ ++ + GM + ++V Sbjct: 58 IEPSKVTLKDYLNHWLEI-----KSMSIQKSTFAGYRAFINQHVIPSIGMVALHKLNVMH 112 Query: 136 IAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI-TRQR 193 I + I G ++ +L A + NPA + P+++ + Q Sbjct: 113 IQKCYKTAINKGITNNSILLMHRILKSALNLAVKQNII--SRNPADFAEIPKKEKTSIQT 170 Query: 194 LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQE----- 248 + EE KK + + ++G LLA+ TG RLG++ +++ DI + V Sbjct: 171 WTEEEVKKFLAHSQESRYHIG--YLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGH 228 Query: 249 -----KTGS----KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 KT K IP+ + ++ + + SAYL + E G Sbjct: 229 DNKIKKTAKTNSSKRTIPVPNETIVALKKHKILINKEKLRFGSAYLDQDL--INCNEFGR 286 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQ 356 +K +F +A I + FH+ R + +QG++ + + LGH Sbjct: 287 IIKRAHFRKSFIRATHKVGIKEIK-----FHDLRHTHATILLKQGVNPKIISERLGHTDI 341 Query: 357 QQT-DRYHD 364 T Y Sbjct: 342 SMTLSVYSH 350 >UniRef50_A5KPC6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A5KPC6_9FIRM Length = 400 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 63/375 (16%), Positives = 127/375 (33%), Gaps = 51/375 (13%) Query: 33 PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQ 92 G++ A T++ + +++ R+ + + G++IT + W + Sbjct: 17 RADGRYIARFTSKTGKRKTLYDFKLNELKRKLREAVYEDEHGLNGNGESITLNAWYVTWT 76 Query: 93 AIQDDRLKSGDIRLNT-YKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRP-R 150 + K +++ T YK + + ++ G + + + + ++E I +G Sbjct: 77 ELY----KKKTVKMTTIYKNHSYYNARVKNSIGKMYLQDIKTYHVQKFINELIDSGLAHG 132 Query: 151 MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK-QPRRKITRQRLSLEEWKKIFDIADAT 209 +R +L D+F +A + NP +A + P+ K R+ L+ EE KK F A + Sbjct: 133 TVSNIRFMLSDMFDKAVLSEYIRK--NPCIAVEMPPKVKKERRVLTREEQKKFFTFASS- 189 Query: 210 HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSL 269 N + A+ TG R+G++ +K+ D + + KT + + ++ Sbjct: 190 -YIHINVLKFAVTTGCRIGEVLGLKWEDCDFEKREITINKTIHYSKASSPVEGSKFFYTT 248 Query: 270 RDVVARCRDYAVSAYLVHFF-------------------------RSTSQAERGAQVKAN 304 ++ R ++ + G+ V Sbjct: 249 AKTISSNRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYY 308 Query: 305 TLTMNFSKARDLARI-----------DWGEGSPATFHEQRSLSERLYKEQGLD---TQKL 350 + + + T H R E G+D QKL Sbjct: 309 NVNSAIKDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKL 368 Query: 351 LGHKTQQQ-TDRYHD 364 LGH T TD Y Sbjct: 369 LGHSTLAMTTDLYTH 383 >UniRef50_Q0FPA2 Probable site-specific integrase/recombinase n=2 Tax=Rhodobacterales RepID=Q0FPA2_9RHOB Length = 341 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 61/357 (17%), Positives = 122/357 (34%), Gaps = 39/357 (10%) Query: 19 YSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 + K + + + T + +A A + L R + + DR+ Sbjct: 4 IRNRNGKWHAQVRIKGHASQTKSFTTKRDAERWAKQTEAELQASALRIDIRVLDRV---- 59 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 T L+RY+ + LR+ + +S V + ++ Sbjct: 60 ----TVRDLLERYRREVTATKRGAASESKRIDGF------LRQTWVDRTLSKVTPQVFSR 109 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR-RKITRQRLSLE 197 DE + RP +L +F+ A+ +VP NP ++P+ +RL Sbjct: 110 YRDERLRTVRPGTVIRDLGLLRSIFEVARLEWDVPLQNNPLANVRKPKAPDPRERRLRPG 169 Query: 198 EWKKIFDIADA-THRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQEKTGSKI 254 E + + + ++ ++LA+ TG R G+I +++ D+ L + + K G Sbjct: 170 ELDLLLTACQSYRNDWLRAGIVLAIETGMRRGEILSIRWCDVSMDTSTLTIRETKNGHAR 229 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 IPL+ + + +V V AN + + + Sbjct: 230 RIPLTAVAVDVLRDMLEVCDDSSVRIF------------------PVSANAFRQCWQRCK 271 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQTDRYHDDRGK 368 D+ + FH+ R + + E GL + + GH+ + RY R + Sbjct: 272 GKVAEDYKQIESLRFHDLRHEAVSRFFEMGLSVPEVALISGHRDPRMLFRYTHLRAE 328 >UniRef50_Q0AUP6 Phage integrase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUP6_SYNWW Length = 392 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 59/376 (15%), Positives = 123/376 (32%), Gaps = 53/376 (14%) Query: 22 KVNKVYWRYK----HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 K K W + P TG+ A + R+ + + + S Sbjct: 8 KDQKNEWVLRYDSSDPRTGERRQHKKRFTGTKREANKYLQRILGEI--------ESGSYS 59 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDI 136 IT +LD++ + +++ T + ++ + G ++ + I Sbjct: 60 DLGNITIKQYLDKWI---NAYCTPTNLQPKTIRSYTSTINNHIIPHLGRHKLNNLKAAHI 116 Query: 137 AQLLDEYIAAG-------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI 189 A + P +L K A + + NP + PR+ Sbjct: 117 ADYYALMSKSRTEGGAGLSPTTVLYHHRILHQALKHAVNQDYLKQ--NPVAKVQPPRKNR 174 Query: 190 TR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--------- 239 + LS+E+ + + Y+ LAL+TG R +I+ +++ ++ Sbjct: 175 PDIKVLSVEQARYLIARYSEEQIYLPVF--LALMTGMREAEIAALRWQNVDFDNRTLSVT 232 Query: 240 ------DDHLHVIQEKTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 ++ L + + KT + +IP+ ++ + ++ R+ Y F Sbjct: 233 NALQRQENRLELKEPKTKKSRRSIPVPEQVVVVLKKEKERQDCYREILGEGYDCRGF--V 290 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQK 349 E G + ++K D + FH+ R + Q ++ Q Sbjct: 291 CAWEDGKPYDPEWIGKQWAKLVAS---DDKIPNGVRFHDLRHTHATILLSQNINLKVIQD 347 Query: 350 LLGHKTQQQT-DRYHD 364 LGH++ T D Y Sbjct: 348 RLGHESIATTGDIYSH 363 >UniRef50_Q3SUE5 Phage integrase n=6 Tax=Alphaproteobacteria RepID=Q3SUE5_NITWN Length = 400 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 61/379 (16%), Positives = 115/379 (30%), Gaps = 39/379 (10%) Query: 8 NNVSVPNLYPLYSRKV-NKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + V + Y+ + +G ++ A E RL + + Sbjct: 23 YDEEVVGFGVRITSGGTRAFILTYRIEARERRLTIGAWPDWSVTAAREEAKRLKREIDQG 82 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL-RERAGM 125 +++R ++ +DRY + +A + L G Sbjct: 83 RDPMAER--DEARESPNVRQLIDRYLEEHAS-----KLAKRNRDDQASMLRKLVEPAWGP 135 Query: 126 KLISAVDVRDIAQLLD--------EYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + + + D+ +LL + P A V +L +F A + N Sbjct: 136 RKAAEIQPDDVDRLLCQIAGGTLGKRGRKPTPVRANRVGEILRKMFNLAIRWRIRTD--N 193 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATH-RYMGNAMLLALVTGQRLGDISRMKFS 236 PA + + LS +E ++ DA R +A+ L L+TG R G++ ++ Sbjct: 194 PAAGFARNAEAPRDRYLSTDEIGRLSAALDAHPNRRAADAVRLILLTGARRGEVLGARWD 253 Query: 237 DIW-DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 D + + T + + + + LR + R R ++ Sbjct: 254 QFDLDAAVWIKPAATTKQRRLHRAPISASAAALLRTI--RLRVPKDCEWVFP------GD 305 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLG 352 G + + + R A + H+ R L G+ KLLG Sbjct: 306 AEGKPL--QDIKRFWEDVRTKAELPAVRT-----HDLRHTFASLLVSGGMTLPMIGKLLG 358 Query: 353 HKTQQQTDRYHDDRGKGWS 371 H Q T RY Sbjct: 359 HTQVQTTQRYAHLLDDPLR 377 >UniRef50_B9JF62 Tyrosine site-specific integrase/recombinase protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JF62_AGRRK Length = 431 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 73/415 (17%), Positives = 129/415 (31%), Gaps = 72/415 (17%) Query: 7 KNNVSVPNLYPLYSRKVNKVYWRYKHPVTG------KFHALGTNEAEAIAIATEANTRLA 60 + ++ K + P G K +GT + A E +R Sbjct: 23 YYDNALKGFGLKVMPTGAKSWIIEYRPGAGGRGVSKKRIKIGTLATHSPEAAREEASRTL 82 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLL 119 + T + R KG+ + + + + + TY + V + Sbjct: 83 ARVTLGSDPAAARTDERKGQV--VAAVAETWLEEHVLIKR----KPKTYNEYKLAVERYI 136 Query: 120 RERAGMKLISAVDVRDIAQLLDEY------IAAGRPRMAQVVRSVLIDVFKEAQHYGEVP 173 + G + V+ D+ ++ + A G MA + L ++ AQ VP Sbjct: 137 KPVLGSLKFALVEPSDVLRMQAKIIRGKVNKANGGRTMANRALATLSAIYGWAQDLKIVP 196 Query: 174 PGYNPALATKQPRRKITRQRLSLEEWKKIFDIADAT------------------------ 209 G+NP + ++ + + L+ EE + Sbjct: 197 LGFNPVTSIERFKENQIERFLTSEEIGSLATALTEAETIGLPYEVDETKAKAKHANRVEN 256 Query: 210 -----HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRL 262 + A+ L L TG R +I R+ +SD+ + L + KTG K I LS + Sbjct: 257 RRTVYGEHAIAAIRLYLFTGCRRSEILRLTWSDVDLERGILFLPDSKTGKKPVI-LSPQA 315 Query: 263 NAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWG 322 AI +L V Y++ + ++ E + + A + Sbjct: 316 QAILTNLTRV---------GKYVIAGADAGTKDEAPR----ADIDRPWKAVTRRAGL--- 359 Query: 323 EGSPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 H+ R + G KLLGHK T RY +VA Sbjct: 360 --HKLRLHDLRHTYASIGAGGGQGLPIIGKLLGHKNIATTQRYAHLDTNPMKRVA 412 >UniRef50_Q7MKK6 Integrase n=6 Tax=Proteobacteria RepID=Q7MKK6_VIBVY Length = 402 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 74/405 (18%), Positives = 133/405 (32%), Gaps = 67/405 (16%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKF--HALGTNEAEAIAIATEANTRLA 60 A R N+ + + S K Y+ Y + + GK LG+ A A A + A Sbjct: 18 ADKRLNDTEISGFHARISPKGVIKYYLY-YRIHGKQRNFLLGSANALTPAQARDLAKEKA 76 Query: 61 EQRTRQILAISDRIATSKGK---AITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 Q R K + ++T S +L+ + + + + + + + Sbjct: 77 GQVAAGEDVQDTRHEAKKREQRNSLTLSKFLEEHYSAYLMSINAKTAQKS-----LMCIQ 131 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGR-PRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 + K + + DI Q + E AGR P + L VF A +G + Sbjct: 132 SNFKHLSTKPLVEITAWDIQQWVAERSKAGRAPATISYAYNRLRAVFNRAVEWGFIDSHS 191 Query: 177 NPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGN-------------------- 215 K PR R + LS+ E + + A + + Sbjct: 192 --LDNVKIPRIDNKRIRYLSVSEEAALLESLKARDARLKDEALQRYGKRAQRLVSQRYVD 249 Query: 216 ----AMLLALVTGQRLGDISRMKFSDIWDDHLHVIQ----EKTGSKIAIPLSLRLNAINW 267 ++LAL TG R G+I +K+S I + ++ K+ +K IPL+ + + Sbjct: 250 FLEPLIVLALNTGMRKGEILSLKWSHINMEDRYLTIRSENAKSKNKRTIPLNNTVYTMLQ 309 Query: 268 SLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPA 327 A + + G + ++ + A I+ Sbjct: 310 ------AWHEQNPDTELVFE--------RNGKPL--DSYQYQWESLLKEAGIEN-----F 348 Query: 328 TFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKG 369 FH+ R + D ++LLGH + T RY + Sbjct: 349 RFHDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLAPEH 393 >UniRef50_A9ANN7 Integrase family protein n=30 Tax=Burkholderia RepID=A9ANN7_BURM1 Length = 368 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 71/397 (17%), Positives = 131/397 (32%), Gaps = 58/397 (14%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M R R + +Y K ++ K K+H L + + Sbjct: 1 MIGRRRSPSFLPARVYE----KHGSWWFVDK---NRKWHKLCRVRDGIVRLYESLAEYTR 53 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 + L T +D + R K T K + L+R Sbjct: 54 ASDSAAAL------------DNTMPALIDDWM-----RKKLPAYAPKTRANYVKMIGLIR 96 Query: 121 ERAG-MKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + G LI V D+A+ LD++ +P + +++L +F A G NPA Sbjct: 97 KEFGPQWLIEDVRPADVARFLDKHF-HDKPSSSNKHKALLSLIFMHAVRRGLC--DGNPA 153 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIA-------DATHRYMGNAMLLALVTGQRLGDISR 232 + + + ++ +E + ++ R + + LA T QR+GD+ Sbjct: 154 REVGAAKERKRDRYITDDELDAVRAAIVAGADYKTSSARSILCLVDLAYQTAQRIGDLLA 213 Query: 233 MKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 + + ++ D+ + KT + + L L + LR+ + R R V+A Sbjct: 214 LNWQNVSDEGISFHPSKTVNSSGVRL---LIEMTPDLRETLDRARGGKVTAIGP-----V 265 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEG-------------SPATFHEQRSLSERL 339 G + + +A + AR + + + FH+ R+ + Sbjct: 266 ICTHTGGRFTYIGAYSAWKRACERARSTYEKECAKKGIEPNPLYLTGMHFHDLRAKALTD 325 Query: 340 YKEQ--GLDTQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 K Q Q L GH T+ T Y R + Sbjct: 326 LKRQRGAAAAQSLAGHTTESMTAHYTKAREVERVQPV 362 >UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NM52_9DELT Length = 406 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 68/389 (17%), Positives = 140/389 (35%), Gaps = 40/389 (10%) Query: 4 RPRKNNVSV---PNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 RPR++ + L L + + RY+ + LG ++ A A+ Sbjct: 12 RPRESRFELTDGKGLVLLVLPSGRRSWLLRYQFEGKPRRITLGEYPDMSLLQARNASEAT 71 Query: 60 AEQRTRQILAISDRIATSKGKA--ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 + + R T S L Y ++ + +++ Sbjct: 72 RSIIKQGLDPALKRTEEKTAHKTSPTVSDLLTEYWDMELKE------SPSGKERRRLVEK 125 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + G + ++ + RD A LLD A P ++ VL+ +F A G + ++ Sbjct: 126 DVLPPWGKRKVAEITRRDAALLLDTVRAR-APVTGNRLQGVLVRMFNFAAERGVLE--HS 182 Query: 178 PALATKQPRRKITRQRLSLEEWKKIFDIADATHRYM------GNAMLLALVTGQRLGDIS 231 P + ++ + + + L+ +E K ++D + M A+ + L+TGQR G++ Sbjct: 183 PLMGLRKKKEQPRSRVLADKEIKLLWDALALDNTAMDIYRVSKLALKMILLTGQRPGEVC 242 Query: 232 RMKFSDIWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 M + +I D ++ + K+ +PL +++ + R Y+ F Sbjct: 243 GMTWDEIDGDTWNIPAERMKSKEPHNVPLGSMA-------LEIIEQARRYSPRG---STF 292 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT-- 347 S + + ++L+ + + T H+ R E G+D Sbjct: 293 VFKSSHFKEGPITPHSLSKAILRHWQEMGVT----ERFTPHDLRRTLRTRLAEIGVDDVV 348 Query: 348 -QKLLGHKTQQQTDRYHDDRGKGWSKVAL 375 +++LGHK Q Y+ + AL Sbjct: 349 GERVLGHKLQGIMAVYNRHSYDKEKRQAL 377 >UniRef50_Q129B4 Phage integrase n=1 Tax=Polaromonas sp. JS666 RepID=Q129B4_POLSJ Length = 387 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 67/384 (17%), Positives = 123/384 (32%), Gaps = 39/384 (10%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTG--KFHALGTNEAEAIAIATEANTRL 59 R + ++P L+ S K Y G + +GT + A + ++ Sbjct: 21 GKRDEYRDEALPGLWLRVSSAGVKTYAVLARKKGGALERVTIGTADKLTPENARDKAKKI 80 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-L 118 + + A +K T + L Y + ++ + + Sbjct: 81 IADLATGVSHAA--SARAKRGETTFAELLTDYL-------SNTTMKPRSLEAYQWLYKKH 131 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + G + +S V V I L + + P A S++ F A G G NP Sbjct: 132 VEADLGKRKLSDVSVERIRALHKKI-SKDTPTTANRCVSMVKAAFNWALKEG-TYTGANP 189 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 A K+ + L E F + + + +L L+TG R ++ M+++DI Sbjct: 190 AGHVKKNTETSRTRYLQPAELAIFFQALEESEEPAKSFFMLCLLTGARRANVLAMRWADI 249 Query: 239 --WDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 D + K G ++ IPL + L+ VA S ++ T Sbjct: 250 SLEDGIWRIPAGDAKAGEEMNIPLVPEAVTLLTRLKIEVADT-----SPWVFPADSKTGH 304 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLL 351 + ++ R + + + H+ R G +T K L Sbjct: 305 YQEPK--------RAWATLRRRSGL-----ADLRIHDLRRTMGSWLVRTGANTAINAKAL 351 Query: 352 GHKTQQQTDRYHDDRGKGWSKVAL 375 GHK+ Q Y + A+ Sbjct: 352 GHKSMQAAAVYQRIADVDPVRDAM 375 >UniRef50_B3CTI8 Putative integrase n=7 Tax=Orientia tsutsugamushi str. Ikeda RepID=B3CTI8_ORITI Length = 379 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 52/372 (13%), Positives = 117/372 (31%), Gaps = 44/372 (11%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTG--KFHALGTNEAEAIAIATEANTRLA 60 R + L+ K + + G + LG ++ A + L Sbjct: 21 KRDVYRDTKDKGLFLEVLYGGTKTLYLG-ITIKGVYRKIKLGNFPNISVNYARKKTLILK 79 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 Q + I + + A+ T D Y ++ ++ ++ Sbjct: 80 GQIAKGIDPLKTKNAS------TLKEVYDLYI-------NHRKLKDSSKILYKGIMNKYL 126 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 + +S + DI ++ + G A ++ + A + NPA Sbjct: 127 KNLHYIHVSNIRKEDIYKIFNN-AKKGGKYSANKTLKLIKAILNIAVELELIEK--NPAN 183 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 K + + + ++LEE + + + Y+ + ++L T R ++ M++ +I Sbjct: 184 GIKIHKMQARDRYITLEEMPRFLAAVEEDKNPYLKYFVYISLYTAARRNNVLSMRWENIR 243 Query: 240 --DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 + ++ + K G +PL L + + + + S ++ R S Sbjct: 244 LEEGVWYIPETKNGESQTVPL-------INLLIEKLKQYSYSSESEWVFPGQRRNSG--- 293 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHK 354 ++ + + + A + H+ R + G+ KLL H Sbjct: 294 ----HLTSINVAWKRVCKRAGLKNLR-----IHDLRRTVGSWMAKFGMPIAVISKLLNHN 344 Query: 355 TQQQTDRYHDDR 366 Q T Y Sbjct: 345 DHQSTKFYIHLN 356 >UniRef50_Q2NDK6 Site-specific recombinase, phage integrase family protein n=2 Tax=Erythrobacter RepID=Q2NDK6_ERYLH Length = 330 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 106/301 (35%), Gaps = 36/301 (11%) Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDV 133 A K KA + + + + K +T + L R G + A++ Sbjct: 38 APEKLKAPLFAEFAEEFWLDYSPHWK-----PSTRDASRAYIDKRLIPRFGALSVDAIER 92 Query: 134 RDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR 193 DI + D G VL + + A+ G NP + +R + + Sbjct: 93 ADINRWRDSMADVGGA--FNRSIPVLSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPERY 150 Query: 194 LSLEEWKKIFDIADAT---HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKT 250 LS +E++++ + + ++ A+LL + TG R+ +I+ +++ + L + KT Sbjct: 151 LSADEYRRLGKVLAEHNGANAFVVPALLLLIYTGARVSEIATLRWRYVELPRLALPDSKT 210 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 G K I L+ + A+ L+ LV L ++ Sbjct: 211 GPK-TIYLNPQAIAVLDGLQ--------RRGDDQLVFPAMYREV--------PINLGQHW 253 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTDRYHDDRG 367 K R A + H+ R + +G+ KLLGH + T RY Sbjct: 254 EKIRRKAALPD-----VRLHDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLAD 308 Query: 368 K 368 + Sbjct: 309 E 309 >UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1ATP4_PELPD Length = 449 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 66/383 (17%), Positives = 122/383 (31%), Gaps = 37/383 (9%) Query: 14 NLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEA--NTRLAEQRTRQILAI 70 +K + + Y + LG+ + A + + + +A Sbjct: 36 GFTIRVMPSGSKTWLYLYAFDGKRRKMNLGSYPDVTLETARGRFEDAKRKVKNNIDPMAE 95 Query: 71 SDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISA 130 ++ A + KA T + + Y R K + K + + G + + Sbjct: 96 AEEQAEERRKAPTVADLVHDYIERHAKRFKR-----SWAKDEQILNREVVPAWGKRKAAD 150 Query: 131 VDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT 190 V RDI +LL+E + P MA ++ +F A + P K P K++ Sbjct: 151 VTKRDILRLLEEIVNRNAPAMANNTFQIIRKMFNWAVEQDILQHT--PCTGVKLPSPKLS 208 Query: 191 RQR-LSLEEWKKIFDIADATHRYM----GNAMLLALVTGQRLGDISRMKFSDIWDDHLHV 245 R R LS E K +++ M A+ L L T QR G+++ + S++ + Sbjct: 209 RDRVLSESEIKTLWENLGRPDAGMSDGVRRALRLILTTAQRPGEVTGLHTSELDGCWWTI 268 Query: 246 I--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYA----VSAYLVHFFRSTSQAERGA 299 + K G + LS I + R+ + Y+ + + G Sbjct: 269 PAERAKNGKTHRVYLSGLALEIINQAIAQAKKSRETPYDQEYNGYVFPCHHKSKEKPMGD 328 Query: 300 -------------QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD 346 + + F+ A A + T H+ R + G Sbjct: 329 TALAVAVGRALASPLTDDKGNPLFTAAGKPATENRLGIDHFTPHDLRRTTATFMASMGFM 388 Query: 347 ---TQKLLGHKTQQQTDRYHDDR 366 +L H Q Y+ R Sbjct: 389 DEVIDAVLNHAKQGVIKVYNQYR 411 >UniRef50_Q1IPY0 Phage integrase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPY0_ACIBL Length = 359 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 67/375 (17%), Positives = 118/375 (31%), Gaps = 48/375 (12%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ 62 R + + +Y R +W GK + A E + Sbjct: 2 PRRKTPDRD--GVYQRKDRPGQ--FWASWTDQNGKRRQRRLRGVFTLTQAKELLAAAQLR 57 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 R + + + I R+ Q RL +++ + L + Sbjct: 58 VERIKVLGFAEPTKERFEKIE-----ARFLLHQRARLTKAGYE----RERGVVETHLHDY 108 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 G ++ + DIA + + A P L +F+ + + NPA Sbjct: 109 FGQMQLALIRRGDIANFVTKRAAEVSPATVAKELVTLKHLFRLCVEWELLVL--NPATGV 166 Query: 183 KQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW-- 239 K P+ R R L EE + + ++ LA TG R ++ +++ D+ Sbjct: 167 KAPKVAPGRVRWLQPEELRALLQAC---PDWLRPIAGLAAATGMRRSEVLGVRWFDVDRR 223 Query: 240 DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 + L + Q K + L+ S V+ R S L Sbjct: 224 NGCLTLRQTKNNESRIVFLN-------QSALHVIDSLRKGKSSEKLFP------------ 264 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQ 356 +V ++M F + I+ +H+ R L ++ G D Q +LLGHK Sbjct: 265 KVTPEQVSMGFLRTCRELGIED-----FRWHDLRHCFASLLRQSGADLQDVAELLGHKDL 319 Query: 357 QQTDRYHDDRGKGWS 371 + T RY S Sbjct: 320 RMTKRYSHLSPAHLS 334 >UniRef50_C5WGZ4 Integrase n=18 Tax=root RepID=C5WGZ4_STRDG Length = 362 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 126/365 (34%), Gaps = 47/365 (12%) Query: 16 YPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIA 75 Y + + + Y V GK + + A E L + + Sbjct: 6 YKKENGETAYKFLLYAGYVNGKRKYIRREGFKTKQAARETLINLQAELDK---------- 55 Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRD 135 ++T D++ + ++ K + + + I ++ Sbjct: 56 --PKSSMTFGALTDQWLKEYEKTVQGSTY----LKTERNINKHILPKLDKVKIGDINPLL 109 Query: 136 IAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ--- 192 I +L +E+ + + ++ ++ A YG + NPAL P+ K R+ Sbjct: 110 IQRLTEEWCNDLKYG--GKILGLVRNILNLAVRYGYI--NNNPALPITPPKIKRKRKMNN 165 Query: 193 -RLSLEEWKKIFDIADATHRYMGNA-MLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKT 250 +L++ K+ ++ + T A L TG R G++ + + D+ + L + + T Sbjct: 166 NFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVT 225 Query: 251 GSKIAIPL-------SLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 +++ + + S RL +++ +++ R+ ++ L+ Q+E G + Sbjct: 226 RTQVGLEIDVTKTKSSDRLISLDDETLEILLELRETFPTSTLMF------QSESGGIMTP 279 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTD 360 + + I + T H R L E GL Q LGH Q T Sbjct: 280 SLPRKWLLQI-----IKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTM 334 Query: 361 -RYHD 364 Y Sbjct: 335 NVYTH 339 >UniRef50_C1XYN2 Site-specific recombinase XerD n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYN2_9DEIN Length = 387 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 132/386 (34%), Gaps = 57/386 (14%) Query: 22 KVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKA 81 K + Y ++GK H A+ A + L R +L DR Sbjct: 12 KRADGRYEYSLMISGKRH---RGYAKTRKEAAKKLAELLVAYGRNLLPDPDR-------- 60 Query: 82 ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIAQLL 140 IT + +R+ + R+K T+ + G + + + L Sbjct: 61 ITLKEFCERWLTSVEHRVK-----PTTHYGYKVALEKHAIPILGDIAVQRLQPLHLTHLY 115 Query: 141 DEYIAAG------------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRK 188 + + P ++V L ++A +G +P +NPA K P+ Sbjct: 116 ADLLKKRIHPNDPKRLKTLSPTTVRLVHRTLHAALEDAVRWGLLP--WNPADRVKPPQAP 173 Query: 189 ITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHV 245 + + EE + A+A H + LAL+TG R G++ +K++DI + + V Sbjct: 174 RYTGEVWTPEEVWRFL--AEAQHSRLYALFFLALMTGMRRGELLGLKWADIDWQEGAIWV 231 Query: 246 IQ--EKTGSKIAI-----PLSLRLNAINWSLRDVVARCRDYAVSAYL-----VHFFRSTS 293 Q K GSK + S R ++ + +V+ + R+ L Sbjct: 232 RQNLTKAGSKRVVQSPKTYRSSRPVDVSSDVLEVLQQHREQQEKDRLGIGDAWTDEGWVF 291 Query: 294 QAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KL 350 G ++ + L F A++ FH+ R L G+D + + Sbjct: 292 TTSVGTPIEPSNLRREFLAIIKRAKVKEIR-----FHDLRDTHVSLLALAGVDPKVVSER 346 Query: 351 LGHKTQQQT-DRYHDDRGKGWSKVAL 375 +GH + T Y K AL Sbjct: 347 VGHASVAFTQQTYQHLFRAQRKKAAL 372 >UniRef50_A5L0D6 Site-specific recombinase, phage integrase family protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L0D6_9GAMM Length = 434 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 66/367 (17%), Positives = 122/367 (33%), Gaps = 44/367 (11%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQIL 68 + VP L + Y + + +A + + Q R + Sbjct: 25 DTQVPALGVRVYTDGRRFY-----------VTHLSIPNKTLAAVGQLTLKKVRQHVRALQ 73 Query: 69 AISDRIATSKGKAITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMK 126 A T + I + + + K L+T + + L G Sbjct: 74 ASFLDKETKPIRLIRFDALVKEEWADKVCKGWK-----LSTQGTASSALKKNLLPEFGRF 128 Query: 127 LISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR 186 +S +D + + DE + A VL +FK A G NP KQ R Sbjct: 129 PVSCIDSCHVHRWFDELSQSY-AGTANRNLDVLRSIFKYAVKQGYCID--NPCDGLKQNR 185 Query: 187 RKITRQRLSLEEWKKIFDIADATHRYMGN------AMLLALVTGQRLGDISRMKFSDIWD 240 ++ + LSL+E ++ + + L L+TG R+ +++ +++S + Sbjct: 186 KRKLNRFLSLDELARLHKALTVVSQQGELEACCCQVLELVLLTGCRISEVTGLQWSFVKG 245 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 H+ KTG+K+ + + + + V R + R S++ + Sbjct: 246 REWHLPDSKTGAKV-VYVGKEAQQLLSDIPQQVGAHRSESHDDVFTPLRRFVSRSTK--- 301 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQ 357 ++M + + R LA I+ H+ R +G KLLGH Sbjct: 302 -----VSMVWQQVRALAHIED-----VRIHDLRHTFASYAVLEGYPIPMVSKLLGHTRIS 351 Query: 358 QTDRYHD 364 T RY Sbjct: 352 STLRYAH 358 >UniRef50_A4Y8Q0 Phage integrase family protein n=2 Tax=Shewanella RepID=A4Y8Q0_SHEPC Length = 443 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 64/381 (16%), Positives = 127/381 (33%), Gaps = 41/381 (10%) Query: 8 NNVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEANTRLAEQRTR 65 + S+ L KV +R++ GK +G I A + +A Sbjct: 29 HRDSINGLILDVFPSGKKV-FRFRRKHLGKDVTVTIGEFPHLTIENARKQAKHIAVDLAE 87 Query: 66 QILA------ISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-L 118 + + +I+ D ++A ++K+G+ RLN+ K Sbjct: 88 GVNPNEAKRLAKQEAERKEALSISVQQLFDSFEAEFMVKIKTGERRLNSLKDIQSTWKNH 147 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 ++ R + ++ + LL I + ++L +F NP Sbjct: 148 IQPRIAHLPVESITTVEAENLLKLIITKNSAAVRNKCLTLLKSMFN--------EQQINP 199 Query: 179 ALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 K+ + L+ E + + + + + ++L L+TGQR + M++ +I Sbjct: 200 FGRIKKLAAVKRERILNQHEVRALLESLEFEPPLYRDVVMLLLLTGQRKSCVFSMEWREI 259 Query: 239 WDDH-LHVIQE---KTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 + +I K+ A+PL+ + AI R +A+ V + + Sbjct: 260 DHQRGMWIIPTSKIKSKKPHAVPLTKEVMAIL---------ERRSHEAAHGVKYVFPAER 310 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEG------SPATFHEQRSLSERLYKEQGLDTQ 348 + G + + + + A + E T H+ R +G + Q Sbjct: 311 SHSGHITENAGKGSFWYRITERAGLRSPEKSATAKEDNVTIHDLRRTIASWSVMRGGNIQ 370 Query: 349 ---KLLGHKTQQQTD-RYHDD 365 KLLGH T Y Sbjct: 371 TTSKLLGHSDISITASTYAHL 391 >UniRef50_B7V6G8 Integrase n=5 Tax=root RepID=B7V6G8_PSEA8 Length = 349 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 84/383 (21%), Positives = 132/383 (34%), Gaps = 55/383 (14%) Query: 1 MAARPRKNNVSVPNLYPLYSR-KVNKVYWRYKHPVT-----GKFHALGTNEAEAIAIATE 54 M R KN P + K KV+ Y + K LGT+ EA + Sbjct: 1 MRPRSNKNRGLPPRMIKRTRTMKSGKVWVGYYYDGRDAEGRRKEIPLGTDLDEAREKWAK 60 Query: 55 ANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAK 114 + TR T L R++ T K+ +K Sbjct: 61 LERKAVPPTTR-----------------TVGDLLRRFERDVVPTK-----APKTQKEYSK 98 Query: 115 PVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPP 174 + L + + IAQ D A R A ++L + A+ +G + Sbjct: 99 MIRQLLGAFDEAPVEDITPSTIAQYRDARTAKVR---ANREITLLSFAYNMAREWG-ITS 154 Query: 175 GYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 NP K+ + + ++ E WK +++ A + M LA +TGQR D+ +++ Sbjct: 155 MENPCRGVKKNKEQPRDVYVTDEVWKALYEKAPDD---LRVTMDLAYLTGQRPADVRKLR 211 Query: 235 FSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 +D+ D+L V Q KT K+ I L R + L +V + + Sbjct: 212 KNDVSGDYLLVGQNKTSRKLRIRL-RRADGQMTQLGHLVES---------IASDSPALVT 261 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWG---------EGSPATFHEQRSLSERLYKEQGL 345 E+G + L F AR A + E F + R + E Sbjct: 262 NEKGQPMTEKMLRTRFDTARKAAADEAIKAGDQDLAREIMQFQFRDIRPKAASD-IESLA 320 Query: 346 DTQKLLGHKTQQQTDRYHDDRGK 368 D LLGH TQ+ T R + GK Sbjct: 321 DASDLLGHTTQEITKRVYRRIGK 343 >UniRef50_Q1K3L0 Phage integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3L0_DESAC Length = 417 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 59/372 (15%), Positives = 126/372 (33%), Gaps = 44/372 (11%) Query: 10 VSVPNLYPLYSRKV-NKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQIL 68 SVPNLY + K +++ F ALG + A + + + Sbjct: 36 HSVPNLYLSVWQNGSRKFHFKMTFLHETTFIALGALGEITLPDAVQKAQLYRQMIQEGLD 95 Query: 69 AISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLI 128 R ++ + T + Y D+ K + + G + Sbjct: 96 P---RRTLTERRIKTLEKFCHEYFEDFIDQNHKHP-----KKSRHMLKRWILPVFGHIPL 147 Query: 129 SAVDVRDIAQLLDEYI--------AAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 +D R +++ + + + A+ S+L +F+ A V NP Sbjct: 148 KQIDSRLVSEFVQQILTTVSQKTERRISGSTAKQALSLLSKLFQCAIDQHLV--DANPCD 205 Query: 181 ATKQPRRKITR-QRLSLEEWKKIFDIADA--THRYMGNAMLLALVTGQRLGDISRMKFSD 237 ++P+ +R + LS +E+ + + M+LA++ G R ++ + + D Sbjct: 206 GVRRPKVNRSRERYLSGDEYPRFIKATMSLIDRPQAKAIMILAVL-GLRPSEVLGLAWCD 264 Query: 238 IW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + D+ +H+ Q K G + L+ + L D + ++ +S Sbjct: 265 VHLIDNRIHIKQAKNGESRFVTLNSVARDLLQQLYDA-----RKKRAVWVFPSRGKSSTG 319 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLG 352 +++ F + ++A + ++ R + G+D ++ L Sbjct: 320 ------HLQSVSKTFERICNMAELP-----EFNLYDLRRSHATFLLQSGVDLFTIKEALH 368 Query: 353 HKTQQQTDRYHD 364 HKT T Y Sbjct: 369 HKTLASTMVYAR 380 >UniRef50_A3QBL8 Phage integrase family protein n=1 Tax=Shewanella loihica PV-4 RepID=A3QBL8_SHELP Length = 324 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 73/366 (19%), Positives = 128/366 (34%), Gaps = 50/366 (13%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ 62 R RK++ +P P ++ Y+ K GK+ L ++ EA+ E Sbjct: 2 GRRRKSDNHLP---PKVYQRSGSYYFVDKD---GKWIKLASSYPEAMVKYAE-------- 47 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 I G +T S LDRY +YK LR Sbjct: 48 -----------IVGDVGNLVTVSDLLDRYLREVAPLK-----AEASYKSNLAQSKFLRAG 91 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 G + + R I Q +D G+ + ++L + K A +G + +NP + Sbjct: 92 LGDIRVDELTPRHIYQYMDVRGKKGKTQT-NREIAMLSHMLKYAIRWGLI--DHNPCRSV 148 Query: 183 KQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 + + + + +E+K D A + M L+TG R DI +++ + +D Sbjct: 149 MRFKETPRDRYIEDKEYKAFRDFA---GPLIAAYMDFKLLTGLRKSDILKLRRDALKEDG 205 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 +HV+ KT KI I S L A +++D+ S YL +G Sbjct: 206 IHVLINKTKRKIIISWSDHLRAAVQAIKDL----PRPINSIYLF-------STRKGQPYT 254 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTD-R 361 + + + + A T H+ R+ + + + +LL H + T Sbjct: 255 TDGFSSIWQRKMVKAMEKGILTERFTDHDVRAKTGSDAELE--HATRLLAHLDAKVTQKH 312 Query: 362 YHDDRG 367 Y Sbjct: 313 YRRKTA 318 >UniRef50_C4XKJ5 Site-specific recombinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XKJ5_DESMR Length = 410 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 72/394 (18%), Positives = 134/394 (34%), Gaps = 56/394 (14%) Query: 10 VSVPNLYPLY--SRKVN---KVYW--RYKHPVTGKFHALG---TNEAEAIAIATEANTRL 59 + P + +RK Y+ YK + +LG + A A A + Sbjct: 10 TNFPGVRFREHPTRKHGVQKDKYFAIYYKVDGKRREESLGWASQGMSAAKASQVLAKLKE 69 Query: 60 AEQRTRQILAISDRIATSKGK--------------AITTSTWL-DRYQAIQDDRLKSGDI 104 A + +++++ ++ K IT + + + Y + K I Sbjct: 70 AARTGEGATSLAEKRKLAEAKREEERQQEEARARENITFADYCANDYLPLARVTKKPESI 129 Query: 105 RLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVF 163 R K + + L G + + + ++L AG PR Q V + ++ Sbjct: 130 R----KTEEHVKNWLGPVVGRLPLKNIRQMHMQKVLLAMANAGRSPRSIQYVFATFRAIW 185 Query: 164 KEAQHYGEVPPGYNPALATKQPRRKI-TRQRLSLEEWKKIFDIADATHRYMGNAMLLALV 222 A++ G V +P P+ ++ LS E + + LL+L Sbjct: 186 NHARNNGFVQV-QSPTKGVALPKVNNERKRYLSRPEADALLAELATRSPQTHDLALLSLD 244 Query: 223 TGQRLGDISRMKFS--DIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYA 280 TG R +++ + + D+ + ++ K AIP++ R+ + S+ Sbjct: 245 TGMRFSEVTGLTWGCVDLDKGRIDILNAKGEKDRAIPMTARVKELFESM--------TPG 296 Query: 281 VSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSP---ATFHEQRSLSE 337 S L+ R Q + ++ +F A + ++ P +FH R Sbjct: 297 ASNELIFKSRVGGQIGK--------ISKSFDLAVEKLGLNKDVDDPKQIFSFHCLRHTCA 348 Query: 338 RLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGK 368 E G D QK LGH T T RY Sbjct: 349 SWLIEAGTDLYVVQKTLGHSTPVVTQRYSHVADA 382 >UniRef50_B0PGN2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PGN2_9FIRM Length = 526 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 71/401 (17%), Positives = 131/401 (32%), Gaps = 57/401 (14%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M R +K SV R+ N W + + L + E +L Sbjct: 1 MGKRRKKGEGSV--------RQRNDGRWEGRVVIGYDEKGLPRTKNVLAKTKRECQEKLK 52 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKA-KPVSLL 119 + R + ++++ WLD + IR T K + Sbjct: 53 QLRETMTGSKTEKVRPEMP----FGEWLDFWYQNYVK----PQIRPTTQANYEAKIYQHI 104 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAG------------RPRMAQVVRSVLIDVFKEAQ 167 G ++ + +D+ Q AG M + + + ++A Sbjct: 105 IPELGKIPLNQLAQKDLQQFYARMKTAGRLIRTEQFGKGLSDSMVRGLHAACRSALEKAV 164 Query: 168 HYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQR 226 G + NPA+ K P ++ Q L EE ++ A A + LL L TG R Sbjct: 165 QEGLIRT--NPAVGCKLPPKRGREMQVLGREELQRFLIQAQAEGYFE--LFLLDLCTGLR 220 Query: 227 LGDISRMKFSDIWD--DHLHVIQE----KTGSKIAIPLSLRLNAIN---WSLRDVVARCR 277 G++ +++ D+ L V ++ K ++++P + + +V+ R Sbjct: 221 RGELLALQWDDLDFRTGALTVNKQVYEVKGRLQVSVPKTRASIRRLVLPPGVVEVLRAYR 280 Query: 278 DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSE 337 + S ++ S + + + + A FH+ R Sbjct: 281 ETVDSRWMFP-----SPVKEDVPMTPGAVRRRLQIILERAGCKRIR-----FHDLRHTFA 330 Query: 338 RLYKEQGLDTQ---KLLGHKTQQQT-DRYHDDRGKGWSKVA 374 L E G+D + +LGH + T D Y G S+ A Sbjct: 331 TLSLENGMDVKTLSAMLGHVSAATTLDIYTHVTGDMQSEAA 371 >UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWR9_9PROT Length = 391 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 61/377 (16%), Positives = 125/377 (33%), Gaps = 37/377 (9%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEA--NTR 58 R S K + + YK K + GT A ++ A + Sbjct: 15 GKRFEVRETGRTGFAVRVSTTGTKTFVFIYKINGQKKRLSFGTYPAMSLNEAHLLYEEAK 74 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 L ++ I + + + +T + Y +R ++++ + ++ Sbjct: 75 LELEKGNDPALIKAKKSQLEKNEVTIPELIKLYINQY------AKVRKTSWEEDERQLNK 128 Query: 119 -LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYN 177 + R + ++ D+ +LD I G P A + +VL VF A+ G V N Sbjct: 129 DILPRWKNRKAIEINKSDVHAVLDTLIERGAPIGANRLLAVLKKVFNYAKEKGYVTN--N 186 Query: 178 PALATKQPRRKITRQR-LSLEEWKKIFDIADATHRY--MGNAMLLALVTGQRLGDISRMK 234 P P + +R R L+ E K + D T+ + NA+ L+T QR +++ + Sbjct: 187 PCDEITPPATETSRDRVLTANEIKTFWHQLDCTNMHSSTKNALKFQLITLQRRKEVALAR 246 Query: 235 FSDIWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 ++DI D + K + + LS + + S +L Sbjct: 247 WNDIHGDTWVIPAGTAKNKKRHDVHLSQFAKKLLIEAKSY------SKDSPFLFPSPCGA 300 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD----TQ 348 ++ + L+ + ++ + H+ R + + + Sbjct: 301 GS----KHIRPDALSKAVKR-----NMETLMVQDFSPHDLRRTAATFLTKSKIANRLVLS 351 Query: 349 KLLGHKT-QQQTDRYHD 364 +L H + T Y Sbjct: 352 LMLNHSQGKSVTAVYDK 368 >UniRef50_A6T076 Phage-related integrase n=2 Tax=Burkholderiales RepID=A6T076_JANMA Length = 342 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 135/375 (36%), Gaps = 46/375 (12%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVT-GKFHALGTNEAEAIAIATEANTRL 59 M +P N P++ + K Y+ + K LGT+ EA+ E Sbjct: 1 MGRKPTVNRHLPPHMRARI--RSGKTYYFFDLGGRPRKESPLGTDYIEALRKYVELA--- 55 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 + T +Y+ + +T + + + L Sbjct: 56 --------------GDETPVHEATFDDLSKKYKLEEIPSK-----AESTRRVQNSDIKHL 96 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + + + + Q L + A P A + + ++ +A+ +G NP Sbjct: 97 DKFFAKAPLGEIRPMHMQQFLQFHKA--TPTTANRCKRLFSSMWNKARAWGY-TDEPNPC 153 Query: 180 LATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW 239 + E +K +++ A + +AM L +TGQR GD + +I Sbjct: 154 TGIAGFTLGKRETYTTDEVFKAVWECASE---PLRDAMDLTYLTGQRPGDALKSTEHEIS 210 Query: 240 DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 D +L + Q KT K+ I + L A ++ R ++ +VH + G Sbjct: 211 DSYLSIQQGKTKQKLRIAIVGELAA-------LIDRIKERKRKYKVVHTALLVNTQ--GM 261 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSP----ATFHEQRSLSERLYKEQGLD--TQKLLGH 353 Q+ L +F AR+ A + E P F++ R+ + E+ + LLGH Sbjct: 262 QLTKAVLRKHFDAAREKACEKYPELEPEIKAFWFYDLRAKAADDKAEEIDEQAASDLLGH 321 Query: 354 KTQQQTDRYHDDRGK 368 ++ + T R++ RGK Sbjct: 322 ESTKTTRRHYLRRGK 336 >UniRef50_D1CFY4 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFY4_THET1 Length = 363 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 64/369 (17%), Positives = 127/369 (34%), Gaps = 51/369 (13%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHAL-GTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 ++ N +R + + G H++ G AE +++ R++LA +D+ Sbjct: 8 KIIKRGNA--YRAQVQINGVRHSITGKTRAE------------VQRKRRELLAAADQGIM 53 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRD 135 +T + +L + I +R T V + G ++ ++ Sbjct: 54 PARTRVTVAEFLSHWLEIIKP-----QVRPATLADYQNSVRNHIVPALGTIKLTKLEPAH 108 Query: 136 IAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QR 193 + +L + +A G + + + + K+A +G +P N A + P+ Q Sbjct: 109 LQELYSQLLAKGLSAKTVRNIHGTIHKAIKDAARWGMLP--RNVADIARPPKVSRQELQC 166 Query: 194 LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQE----- 248 L+ E+ + + + LA+ TG R G++ ++++DI V Sbjct: 167 LTPEQVRLLMQAC--AGTRYEPLLGLAIATGARQGELLGLRWADIDLQRGVVQITRQLTR 224 Query: 249 -------KTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 KT S K ++ + + + R + + R A + G Sbjct: 225 QGTFSEPKTSSGKRSVHVPVSTVELLRRHRSLQLQERLSAGDRWQDQGL--VFANTLGGP 282 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQ 357 + A L + + A + FH R S L QG+ Q+ LGH Sbjct: 283 MDARNLIRAWHRILQQAGLPRMP-----FHSLRHTSASLLLRQGVSPRLIQQRLGHADIA 337 Query: 358 QT-DRYHDD 365 T Y Sbjct: 338 VTLQVYAHL 346 >UniRef50_B9KYK7 Putative integrase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYK7_THERP Length = 359 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 58/367 (15%), Positives = 114/367 (31%), Gaps = 53/367 (14%) Query: 21 RKVNKVYWRYKHPVTGKFHAL-GTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 R+ + + G+ ++ G E E E +LA + + Sbjct: 5 RRRKSGLFEARLQRDGRRFSVYGRTETEVRQKLAELERKLAIDQAPPV------------ 52 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDIAQ 138 +T +R+ A + R K TY + + G +S + + + Sbjct: 53 GRVTVRELCERWLATERKRWK-----PKTYYDYRWHLEHHVYPVLGRVQLSKLTPDRLQR 107 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSL-E 197 D R A + +L F +G + G NP P + L + Sbjct: 108 FFDSL----SGRSANLTFRLLHRCFVVGIRWGFL--GQNPCDRVVPPAYQAPPIELPDAD 161 Query: 198 EWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD---------------DH 242 ++F + + L+L+ G R G+I+ +++SDI Sbjct: 162 ALARLFRYCLESDDPYAGLVGLSLLCGLRRGEITALRWSDIDLQTGQLSVVRSGQWIAGR 221 Query: 243 LHVIQEKTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 + KT + + I + + + + +VA+ + A A+ H G + Sbjct: 222 WVETEPKTRAGRRTIYVGEQGIRLLRRQKALVAQLKLQAGPAWQEHGLVFPGP--NGQPL 279 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQ 358 + + + + + H R S L G+ + + LGH Sbjct: 280 SPSRVAAAVQRICKASGVPPLRH-----HSLRHASASLALLAGVPLPEVSRQLGHANVSI 334 Query: 359 TDR-YHD 364 T R Y Sbjct: 335 TARVYSH 341 >UniRef50_B6ALG3 Integrase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALG3_9BACT Length = 388 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 56/349 (16%), Positives = 113/349 (32%), Gaps = 44/349 (12%) Query: 24 NKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAIT 83 W GK + A A RL + L + Sbjct: 17 GSGIWWVDFWHEGKRI---RKKVGPKAQARAVYERLKTESRLGTLV----PKPVRKHEPL 69 Query: 84 TSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEY 143 ++Y D K + + G KL + + +++++ Sbjct: 70 FGELAEQYIRYADLHHKRKG-------DDTPRLKWWLDAFGDKLALTLKPYMVEEVMEKM 122 Query: 144 IAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT-RQRLSLEEWKK 201 G +P VL V+ A + NP P+ + + L+ ++ ++ Sbjct: 123 NKEGYKPATIARCLVVLKAVYNRAVKNEIIE--RNPIARVFAPKFDNSLVRYLTTDQEER 180 Query: 202 IFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD--DHLHVIQEKTGSKIAIPLS 259 +F+ + + +AL TG R G++ ++ + D+ + + K+G + ++ Sbjct: 181 LFEAL---PERLHPIVTVALHTGCRQGELLKLVWEDVDFNAGTIFLRDTKSGDSRRVLMN 237 Query: 260 LRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARI 319 ++ + +L RD + G ++ L +F +A A + Sbjct: 238 SKVQEVLLALP-----GRDTPGAP--------VFTDTLGGPMEGRNLRRDFDRAIKKAGL 284 Query: 320 DWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDD 365 +P FH+ R G + Q LLGHK+Q+ RY Sbjct: 285 -----APFRFHDLRHTFASRLAMMGANDRTLQTLLGHKSQRMILRYAHL 328 >UniRef50_Q2NBN1 Site-specific recombinase, phage integrase family protein n=3 Tax=cellular organisms RepID=Q2NBN1_ERYLH Length = 390 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 58/367 (15%), Positives = 113/367 (30%), Gaps = 38/367 (10%) Query: 9 NVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQI 67 + + N ++ R +H + LG + +A R+ + Sbjct: 34 DTELAGFGLRVRPSGNYFWFVRLRHRGKHRRITLGRTDELEAGLARAQARRILAETALDG 93 Query: 68 LAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKL 127 L + + T + +++ Y K + N + + G Sbjct: 94 LPKRAVVKAT----PTMTDFVEAYWDDLSRVWKPSTTKRN-WDAWRLDIK---PTFGDTR 145 Query: 128 ISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR 187 ++ + DI + D A VL + K A+ PG NP + +R Sbjct: 146 VADILPADIHRWRDG-CAGESEVKFNRAVPVLSALLKYAEALKMRRPGSNPCRGMPRYKR 204 Query: 188 KITRQRLSLEEWKKIFDI---ADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLH 244 + + L+ E+++I A+A L L TG R+G+I +++ + L Sbjct: 205 QSVERYLTPAEYRRIGAALREAEADRPAEVAIARLLLFTGARVGEIKNLRWEWVKPPRLL 264 Query: 245 VIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKAN 304 + KTG ++ +N +DV+A S + + Sbjct: 265 LPDSKTG--------PKVIWLNSQAQDVLAVIERREDSELVFPNKTGK---------RPV 307 Query: 305 TLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQQTDR 361 + R + H+ R + + KLLGHK + T + Sbjct: 308 NFDQWWFVFRRRCALPD-----VRIHDLRHSFASTAIMENVPLSTIGKLLGHKLVETTAK 362 Query: 362 YHDDRGK 368 Y Sbjct: 363 YAHLSDD 369 >UniRef50_A8ZUN3 Integrase family protein n=2 Tax=Desulfobacteraceae RepID=A8ZUN3_DESOH Length = 397 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 68/380 (17%), Positives = 124/380 (32%), Gaps = 52/380 (13%) Query: 10 VSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILA 69 P + + KH K T + + +A E T+L TR Sbjct: 35 KKCPGCGAAFPVRNKTYKVTVKHGGKKK-----TKLVDNLDLAREIETKLKHDITRGTFH 89 Query: 70 ISDRIATSKGKAITTSTWLDR-YQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLI 128 + ++ +A T + D+ Y + + Y+ + L + G K + Sbjct: 90 L-----QTQKQAPTLDAFWDKDYLPWI------RSNKKSWYEDAINYQTHLAPKLGQKRL 138 Query: 129 SAVDVRDIAQLLDEYIA----AGRP---RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALA 181 A+ DI +LL G+P + +L +F A +G+ G NP Sbjct: 139 DAITQLDIERLLSGLRKGTSKRGKPYAAATIKHQIVLLTRMFNVAARWGK-YTGPNPCKL 197 Query: 182 TKQPRRKITRQ-RLSLEEWKKIFDIADATHRYMGN-AMLLALVTGQRLGDISRMKFSDIW 239 +PR + L+ +E ++ D+ + M + L TG R G++ R+ + D+ Sbjct: 198 IAKPRLNNQKTGFLTDDELTRLLDVLEQWPDRMSAGFIAFLLHTGLRRGELFRLTWQDVN 257 Query: 240 DDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 D L V K G +PLS + D + + ++ + +A+ Sbjct: 258 MDRQTLTVRDPKGGRDTVLPLSEKAI-------DALNSLPREHETPFVFYGRNGAQRAD- 309 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHK 354 + + + A + H+ R G Q LL HK Sbjct: 310 --------FRHPWYRIKQAAALP----EGFRLHDLRHHFASALVSAGTNLYTVQALLTHK 357 Query: 355 TQQQTDRYHDDRGKGWSKVA 374 + T RY + Sbjct: 358 SAAMTQRYAHLSDQALRDAV 377 >UniRef50_B4V6V4 Phage integrase n=6 Tax=Streptomyces RepID=B4V6V4_9ACTO Length = 426 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 80/414 (19%), Positives = 132/414 (31%), Gaps = 76/414 (18%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHAL-GTNEAEAIAIATEANTRLA 60 + R R +Y + + T K + GT +A+ TE Sbjct: 9 SRRTRSRANGDGTVYQRKDGRWEAAGYVLAPGNTRKRIRVYGTTRKDAMTKLTE------ 62 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LL 119 +A S+R T S +L + + +R NT+ + A + L Sbjct: 63 ------KIAASNRGLPVAAADSTVSAYLAYWLD----GVAVHHLRENTHTRYAASIRLHL 112 Query: 120 RERAGMKLISAVDVRDIAQLLDEYI-------------------------AAGRPRMAQV 154 G+K ++ + RD+ LD P Sbjct: 113 NPGLGVKKLARLTTRDVRTFLDGLRTTCQCCAQNRDSVRRSCCAIGQCCGKRLSPLTVTY 172 Query: 155 VRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYM 213 V +VL + A E+P N A K + R Q L+ E +++ A+ + Sbjct: 173 VHAVLKSALEHAVREDELP--RNVARNVKTTTPRPRRFQPLTAAEARQLLHAAN--GDRL 228 Query: 214 GNAMLLALVTGQRLGDISRMKFSDIWDD----------------HLHVIQEKT-GSKIAI 256 LAL TG R G++ + + D+ D L V+ KT S I Sbjct: 229 NALYELALRTGLRKGELLGLHWEDLDLDGGTATIHRSLQRTRSQGLTVLNTKTLASDRRI 288 Query: 257 PLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDL 316 L + ++ R A +++ + G + LT F + Sbjct: 289 ALPTECLNSLKTHQERQQEERQTAGTSWTDNGL--VFTTPNGQPLDPTNLTRRFRRLLHG 346 Query: 317 ARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTD-RYHDDR 366 A + FH+ R + L EQG+D ++LLGH T Y R Sbjct: 347 AELRTIR-----FHDLRHSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHVR 395 >UniRef50_C0N6F6 Site-specific recombinase, phage integrase family protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F6_9GAMM Length = 409 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 56/406 (13%), Positives = 117/406 (28%), Gaps = 70/406 (17%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPVTGKF--HALGTNEAEAIAIATEANTRLAEQRTRQ 66 + + + G+ + +G A ++ A + L Q Sbjct: 28 DTVMAGFKLKRYTSGTMTFSLIYTAPDGRRLRYTMGNFPALSVPAARKMAETLYAQVKLG 87 Query: 67 ILAISDRIATSKGKA-ITTSTWL-DRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAG 124 ++ K ++ D Y K+ +L P + + Sbjct: 88 RDIQREKQTARDVKPVPKLGDFISDTYLPWFIAHHKAPKAKL--------PFNQFKHLF- 138 Query: 125 MKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATK 183 K + V DI + G + L +F A + + NP K Sbjct: 139 NKRLDKVTAWDIESWRSKRHKDGLSASTSNRYIGTLKAMFNRAVEWEVIEQ--NPITKVK 196 Query: 184 QPRRKITR--QRLSLEEWKKIFDIADATHR--------------------------YMGN 215 + + + LS +E +++ + R ++ Sbjct: 197 KQKSDNRAIIRYLSPDEEERLRASLRSRDRRLTQSNPFYADGRFTRLETILGGFQDHVHP 256 Query: 216 AMLLALVTGQRLGDISRMKFSDIWDDHLHVI----QEKTGSKIAIPLSLRLNAINWSLRD 271 +LL + TG R G++ +++ D+ ++ + KTG IPL++ + Sbjct: 257 MVLLLMNTGMRRGEMFNLRWQDVDLNNKRITIVGNTSKTGQTRYIPLNVEAFNVLQMWSK 316 Query: 272 VVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHE 331 + + A ++ + G + + + A+I H+ Sbjct: 317 ---QTKRNAGHVFV---------GKNGKRFT--NIDKAWKVLLRDAKI-----HDFRLHD 357 Query: 332 QRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 R G+D ++LLGH + T RY S Sbjct: 358 LRHHFASRLVSAGIDLNSVRELLGHSDIKMTLRYAHLAPAHLSDAV 403 >UniRef50_Q0VMT6 Rci protein n=22 Tax=Proteobacteria RepID=Q0VMT6_ALCBS Length = 367 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 62/348 (17%), Positives = 117/348 (33%), Gaps = 39/348 (11%) Query: 45 EAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDI 104 + T+ + +RT + I + + +T + L RY A + Sbjct: 22 PTTSKTFRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMTVADALKRYLAEVSPTKRPASA 81 Query: 105 RLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAA--------------GRPR 150 + L + G ++A+ IA+ DE +A P Sbjct: 82 AC-----DVRHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLDRKDAKGNPDPRPRSPN 136 Query: 151 MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP-RRKITRQRLSLEEWKKIFDIADAT 209 ++ ++L +F A + NP ++P +RL+ E ++ D+ Sbjct: 137 TVRLDLALLGHMFTTAIREWGIGLPSNPVQNIRRPAPPPGRERRLNQTEEDRLIAAVDSH 196 Query: 210 -HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI--QEKTGSKIAIPLSLRLNAIN 266 + +G + LAL TG R +I+ ++ + I V + K + +PLS A Sbjct: 197 SNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLETKNTAPRTVPLSSTATA-- 254 Query: 267 WSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSP 326 L++ +A + + R + KA++ A + Sbjct: 255 -ILQEALANPVRPIDTDLVFFGEPGRDGQRR-----PYNFNKPWLKAKETAGMK-----E 303 Query: 327 ATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWS 371 FH+ R + E GL + GHK+ Q RY R + Sbjct: 304 LHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTHLRAEDLV 351 >UniRef50_A8UUR8 Phage integrase family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUR8_9AQUI Length = 351 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 57/366 (15%), Positives = 118/366 (32%), Gaps = 44/366 (12%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHALGT-NEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 ++ Y+ + + + +G ++ A IA E +R+ Sbjct: 7 YLRKRGKVFYFEFMYKGQRYYEKIGVVSKTVAKEIANEIRSRIIRGE----------YIP 56 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDI 136 K + T S + Y K R + ++ + L E G + +S + + Sbjct: 57 QKERKTTFSDAVRVYIEWYR---KKSTAREKSKEENIRRARRLEEFFGSRKLSQISTFLV 113 Query: 137 AQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLS 195 + + G +P+ + ++L + + A+ G P + + + + LS Sbjct: 114 ESYKKKRLEEGVKPQTINMELNILGSILRRAKEAGLFDGEL-PKIEKFRNADRERLRFLS 172 Query: 196 LEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQ----EKTG 251 E +++ + ++ AL TG R G+I +++ D+ + + K+G Sbjct: 173 EREAQRLISAC---PEWFKPVVIFALNTGLRAGEIFSLRWEDVDFERGVITVREASSKSG 229 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 +P++ + + L + Y+ + + T F Sbjct: 230 KVRKLPMNATVKKLLQGL--------ERKEHGYIFTNRFGLPY-----KYEDKTYRRVFK 276 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGK 368 A + A I FH+ R D Q LLGH + T RY Sbjct: 277 TACEKAGIKD-----FRFHDLRHTFASWVAMNSKDIYAVQNLLGHSSPSVTKRYAHLTDD 331 Query: 369 GWSKVA 374 V Sbjct: 332 YLRSVV 337 >UniRef50_B1RM53 Phage integrase n=4 Tax=Clostridium RepID=B1RM53_CLOPE Length = 400 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 110/360 (30%), Gaps = 55/360 (15%) Query: 42 GTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKS 101 GT + ++ T+ + + ++R IT S W + + Sbjct: 39 GTPKRKSFTGKTKKEV---SDKMKDFYVDNNRGLLPTDDKITLSKWFYTWL----FTYRI 91 Query: 102 GDIRLNTYKQKAKPVSLLRER--AGMKLISAVDVRDIAQLLDEYI--AAGRPRMAQVVRS 157 D++ +++++ E G + + I + + P + + Sbjct: 92 HDLKPSSFERYEGLYRNYIESSSIGKIKLMDLRTHHIQAYYNSLVSEERKSPSTIKTINK 151 Query: 158 VLIDVFKEAQHYGEVPPGYNPALATKQPR----RKITRQRLSLEEWKKIFDIADATHRYM 213 L +A G + Y P+ K +LEE + M Sbjct: 152 CLKSCLNQALKEGYITKNY--CTLITLPKGSESPKEIINIFTLEEQQTFMKECMNNKNGM 209 Query: 214 GNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI------------------------QEK 249 +LAL TG RLG+I +K++DI + ++ Q K Sbjct: 210 --LYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNREFQIIEQQPK 267 Query: 250 TGSKIA-IPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTM 308 T + I +PL+ L + R RD + Y + G + + + Sbjct: 268 TKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIYFDNNL--VFSTPIGNYLNESNVRK 325 Query: 309 NFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTD-RYHD 364 F + + + FH+ R E G+ Q +LGH T Y Sbjct: 326 TFKRILNKCNLKELR-----FHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTH 380 >UniRef50_Q0HXZ0 Phage integrase family protein n=6 Tax=Gammaproteobacteria RepID=Q0HXZ0_SHESR Length = 338 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 130/368 (35%), Gaps = 41/368 (11%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 MA R + + +P L+ + + K+ + + L + + + T + Sbjct: 1 MAKR-KPEDAWMPKGVYLHKVRGKATSYIMKN--SKRTITLCSASSTRAEVWTAYEAAIE 57 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR 120 + T+ T D Y ++ + + + + +++ Sbjct: 58 KSLTKY----------------TFKRMADEY----QASATFKELAPRSQRDRERELAMCN 97 Query: 121 ERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 + G + I + +D A S VF G NPA Sbjct: 98 KVFGEMEPDTIKPHHIRRYMD-IRGNTSRTQANHELSACSVVFGWGYERGHCKE--NPAK 154 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD 240 K+ + K + ++ E+ + + + + A ++ + R D+ +K+S + D Sbjct: 155 GVKKFKNKSRDRYITDYEFNALLECCEQR---LKIACEISYLCAARQADVLSLKWSQVMD 211 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 + + + Q KTG K S RL+ + + + R S ++++ G + Sbjct: 212 EGIFIQQGKTGKKQIKAWSPRLHELINEAKTL----RKGIASVFVINKT-------GGGR 260 Query: 301 VKANTLTMNFSKARDLARIDWGEGSP-ATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQT 359 + A+ L ++ +A D + + + TFH+ ++ ++ D Q+ GHKT Q Sbjct: 261 LTADGLRSSWRRAIDKLALQYPDIERTFTFHDIKAKGISDFEGNIHDKQQFSGHKTVGQV 320 Query: 360 DRYHDDRG 367 + Y Sbjct: 321 NVYDRRTE 328 >UniRef50_A4SIA1 Phage integrase family protein n=2 Tax=Gammaproteobacteria RepID=A4SIA1_AERS4 Length = 408 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 67/374 (17%), Positives = 126/374 (33%), Gaps = 39/374 (10%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPVTGKF--HALGTNEAEAIAIATEANTRLAEQRTRQ 66 + + L L + + ++ G+ A+G + A E T ++ Sbjct: 34 DTQISGLKCLVGKGEGNKKFLMRYLWHGRKRAIAIGRFPDVDLNTAREIATEYKRLLSQG 93 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGM 125 I + K + +T Y+ Q L +++ + L+ G Sbjct: 94 IDPKQ--LKEDKRQELTL------YELFQLHYLPYAKHHKRSWQNDEQRFRDHLQPPMGS 145 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 +L+S +++ L ++ +P + ++L + + G + P + K Sbjct: 146 RLLSEINLEQGQALQTSLMSQCKPATNNRITTLLKAILTWSVRMGYLEQH--PLVYLKTL 203 Query: 186 RRKITRQR-LSLEEWKKIFDIAD-ATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DD 241 R R L E +++F AD +RY G + L L+TG R ++ K+ I Sbjct: 204 PENNQRTRFLDKAEIRRLFMAADADENRYAGQYVKLLLLTGLRKDELRLAKWEHIDKVHQ 263 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 L + K G + ++ V+ A +AYL + G + Sbjct: 264 TLFIPHTKNGKSRILHMNHMAM-------QVLQDTPVIAGNAYLFP------GQKPGQPL 310 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQ 358 N +T F++ A+I+ H R L G D Q LGH + Q Sbjct: 311 --NNVTKPFNRMLKRAQIEGQ----VCIHTCRHSVAALIVSSGGTLYDVQAQLGHSSSQS 364 Query: 359 TDRYHDDRGKGWSK 372 + RY Sbjct: 365 SQRYAHLHASRLRH 378 >UniRef50_A1K6M5 Site-specific recombinase, phage integrase family n=1 Tax=Azoarcus sp. BH72 RepID=A1K6M5_AZOSB Length = 358 Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 62/370 (16%), Positives = 124/370 (33%), Gaps = 48/370 (12%) Query: 19 YSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 +++ K YK + K + T + ++ A + AI Sbjct: 4 ITKRQGKHGTTYKVQIRLKGYPAETATFDRLSDARTWAAQTE-------TAIKAGKHFGV 56 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 K T ++Y+ D LK +++ + ++ R+ G ++ V IA+ Sbjct: 57 AKRRTLHELAEKYEQAVADSLK-------SFEARRGHLAYWRQAFGSSALADVSPALIAE 109 Query: 139 LLDEYIAA------GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR- 191 D + L +F A NP ++ R Sbjct: 110 HRDRLTKRTTERGTVSLATVNRYIATLSALFTFAVKE-LQWVEANPVERVRKFGESPGRV 168 Query: 192 QRLSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI---- 246 + LS +E + ++ + Y+ A++LAL TG R +I+ +++ + ++ Sbjct: 169 RYLSDQERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREG 228 Query: 247 QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTL 306 + K G+ +PL+ + L V + +T N++ Sbjct: 229 ETKNGAGRVLPLTGEALDLLRDLAKV-----RDIRDDRVFPVASTTRAF--------NSI 275 Query: 307 TMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYH 363 + A A I +H+ R + G ++ K+LGHKT Q T RY Sbjct: 276 KGAWDGAVKRAGISD-----FRWHDLRHTAASYLTMAGIGSMEVAKVLGHKTLQMTARYS 330 Query: 364 DDRGKGWSKV 373 + ++ Sbjct: 331 HLSPERTVEL 340 >UniRef50_C3EB65 DNA integration/recombination/invertion protein n=1 Tax=Bacillus thuringiensis serovar pakistani str. T13001 RepID=C3EB65_BACTU Length = 367 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 54/349 (15%), Positives = 103/349 (29%), Gaps = 35/349 (10%) Query: 44 NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGD 103 N +AT N R AE+ +A + K + + + + + Sbjct: 12 NPIRRSKMATAKNKRQAEKELALFIAEIEVGEYIKPQKMLFKDFFAEWIQKYAKT----N 67 Query: 104 IRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYI--AAGRPRMAQVVRSVLI 160 ++ T + + G K + + + L + + + + Sbjct: 68 LQKTTLFNYIHILDTHIIPVLGNKKVEDIKTIHLVTLFHGKLPAKGLATTTINSIHTRVK 127 Query: 161 DVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLL 219 +FK+A +G + NP + + K Q +E KI + + L Sbjct: 128 MLFKKACEWGFIKK--NPMDGVSKLKNKRQELQPYDQKEIVKILALTEQEKDMNKMLFQL 185 Query: 220 ALVTGQRLGDISRMKFSDIW--DDHLHVIQE-------------KT-GSKIAIPLSLRLN 263 A+VTG R G++ +++ I +D +H+ Q KT SK I + Sbjct: 186 AIVTGMRRGELLGLEWGHIDFQNDMVHIQQTIVRAGKEILLKEPKTSKSKRIISIPPTFT 245 Query: 264 AINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGE 323 + A R + G + + + + + Sbjct: 246 TKLKQYKKYCAEKRIACGDLWEGEEHLFLFSTWNGRPLTPEKASTRWQYFTQKHGLRHIK 305 Query: 324 GSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTD-RYHDDRGK 368 H RS QG + + LGH Q T Y + Sbjct: 306 -----LHGLRSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAHVLEE 349 >UniRef50_A6D7H3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D7H3_9VIBR Length = 378 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 64/384 (16%), Positives = 124/384 (32%), Gaps = 45/384 (11%) Query: 3 ARPRKNNVSV-----PNLYPLYSRKVNKVYWRYKHPVTGKFH--ALGTNEAEAIAIATEA 55 RP K V N + W + G+ + + GT E Sbjct: 10 PRPAKGEQGVEYRWVKNSRLRLLVTASSKRWIVRLGWKGQRYYESFGTYP--------EM 61 Query: 56 NTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKP 115 E+ Q +A A KG +T + D R +K Sbjct: 62 KFADFERLACQFIADVQSGAYRKGSRLTVQQFFDEVLVPFSQRHHRD------HKTFVSR 115 Query: 116 VSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG 175 + G K I+ V RD+ + L+ + + +F A + + Sbjct: 116 SKRVMTAMGRKRITDVTRRDVEKFLNSL-TGLSNSTLNRYHAFVSKLFSMAVEHDII--D 172 Query: 176 YNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGN-AMLLALVTGQRLGDISRM 233 +P K+ + R LS +E + A A ++ A++L+L+TG R+G++ + Sbjct: 173 KSPVKGIKKLVENNQKDRVLSSQEMESFCRHACAEPNFIHAYALMLSLLTGMRVGNVMSL 232 Query: 234 KFSDIWDD--HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 S + DD + K+G I S + ++ +C + + ++ ++ Sbjct: 233 TRSMLADDLSSALLPMTKSGKSQRIYFSEPA-------QRLIRKCLKVSFNDWVFPSLKN 285 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQ 348 + + + + + +P T H+ R D Q Sbjct: 286 QGEHIAYPRACMDRIQQAMKA-------EGSLEAPFTIHDLRRTQATQMLHVTNDIRLVQ 338 Query: 349 KLLGHKTQQQTDRYHDDRGKGWSK 372 + LGH T+RY + ++ Sbjct: 339 QSLGHSNVNVTERYAYYQNNHLAQ 362 >UniRef50_A3MZK6 Predicted phage integrase family protein n=5 Tax=Pasteurellaceae RepID=A3MZK6_ACTP2 Length = 346 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 77/375 (20%), Positives = 142/375 (37%), Gaps = 52/375 (13%) Query: 1 MA-ARPRKNNVSVPNLYPLYSRK--VNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANT 57 MA R R+NN NL ++ V + Y K +LGTN+ EA+ A + N Sbjct: 1 MARPRKRENNGLPQNLLCRRRKRASGQIVEYFYYVMADSKEKSLGTNKYEAVLEAAKLNF 60 Query: 58 RLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 KG+ + RY+ K NT + + + Sbjct: 61 EF----------------QKKGEVVLFIDVAKRYEVEIVPTKK----AKNTRQSNLQAIG 100 Query: 118 LLRERAGM--KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG 175 L + G + ++ + I Q L P +A + + ++ A+ +G Sbjct: 101 WLCKFFGDPPIPLERIEPQHIKQYLQ--WRKDTPAVANIEVGLFNTIWNSAREWGY-TSL 157 Query: 176 YNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 +P+ K+ K + +KI++ AD M + + A + GQR DI + Sbjct: 158 PSPSQGVKKFPTKYREIYVEDYILEKIYEFADER---MADIIETAYLLGQRPIDICNIHR 214 Query: 236 SDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 S I++ LH+ Q+KTG K+ ++ R L++++ + R + +L Sbjct: 215 SHIYNGILHITQQKTGKKVRFEITGR-------LKEIIDK-RLQPETTWLF-------TN 259 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWG----EGSPATFHEQRSLSERL--YKEQGLDTQK 349 + G ++ LT++F + R+ A + E + R+ + QK Sbjct: 260 KWGKKLDRQILTVHFREIREKAMRAYPELANEIGKVQMRDMRAKAATDISLTATDEQAQK 319 Query: 350 LLGHKTQQQTDRYHD 364 LGH +++ T Y Sbjct: 320 QLGHTSKRMTQHYIR 334 >UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LD60_RHOVA Length = 427 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 68/389 (17%), Positives = 125/389 (32%), Gaps = 37/389 (9%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 A+R + + LY ++ K + RY+ + LGT A + A + + Sbjct: 17 ASRREIPDGIIQGLYFVHQPSGAKSWAVRYRVGGQTRKLTLGTYPAIGLKPARDLASTAL 76 Query: 61 EQRTRQILAISDRIATSKGKAITT-STWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL- 118 R + A + + +++ A +R + ++ + + Sbjct: 77 AAVARGEDPAKAKKAAKEKEKAAPARDFVEAVAASFIERHSKQKNKETHIRETERILQRE 136 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + + + + D+ ++LD + G P MA S + + A + +P Sbjct: 137 IVPVWKGRKLGDITRADVHEVLDAIVNRGCPTMANRTLSTVRKMCAWAVDRSFI--AVSP 194 Query: 179 ALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 K P + +R R LS +E + + +AT G L L T QR +++ M++S+ Sbjct: 195 CHGIKAPASEKSRDRLLSEDEMRAAWLAFEATGWPFGPLAKLLLATAQRRDEVADMRWSE 254 Query: 238 IWDDHLHVI----QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF--RS 291 I + K G +PLS AI L V VS Y+ Sbjct: 255 IDFKTRIWTIPAARSKNGQAHEVPLSEAALAILDGLPHVA------GVSDYVFTTTGKTP 308 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ--- 348 S R + +T T H+ R + Sbjct: 309 VSGFSRAKKAFDEQITRQL----------GEGIPGWTLHDLRRTAASGMTALKSPPHVVD 358 Query: 349 KLLGHKT------QQQTDRYHDDRGKGWS 371 +L HK+ RY K + Sbjct: 359 AVLNHKSGTIKGVSAVYMRYGYAAEKRTA 387 >UniRef50_A6X006 Phage integrase family protein n=2 Tax=Alphaproteobacteria RepID=A6X006_OCHA4 Length = 426 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 66/380 (17%), Positives = 132/380 (34%), Gaps = 36/380 (9%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPV--TG--KFHALGTNEAEAIAIATEANTRLAEQRT 64 + + + K KV+ P TG K + +GT + A + + + + Sbjct: 26 DSELKGFGVKVTPKNRKVFLVMHRPKGHTGAAKKYTIGTYGEWTVQQARDRAREVLTEGS 85 Query: 65 RQILAIS-DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRER 122 + + +R+ + + + +D + + K T+ + + + L + Sbjct: 86 KGNDVGAIERVERQRKSSDILTDLVDEFLKKHAAQNK-------THDETKRILERELLSK 138 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 G K I V DI +L+ G P MA V + + + +PA Sbjct: 139 HGKKSIHVVTKHDILSVLEGIRDRGAPYMANRVLAAIRKFMNWCVSRDII--AISPANGI 196 Query: 183 KQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 P R+++R R L+ +E + A + GN + L +T QR ++ M++S++ D Sbjct: 197 SLPTREVSRDRVLTADETRAALMAAKSVGYPYGNIVELLFLTAQRRDEVGDMRWSELNLD 256 Query: 242 ----HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 + + K G + LS A+ S+ V+ D S + +T + Sbjct: 257 KATWTIPAERVKNGKAHDVHLSKDALALLHSIPRFVSA--DNVESDLVFTTTGNTPFS-- 312 Query: 298 GAQVKANTLTMNFSKARDL------ARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ--- 348 G TL + + + +P H+ R + G+ Sbjct: 313 GYSKSKTTLDKKMLEVLQKMAEDKGVNPELVKLTPWRLHDIRRTVTTELSKLGVAIHVAD 372 Query: 349 KLLGHKT---QQQTDRYHDD 365 +L HK+ Y + Sbjct: 373 AILNHKSGVISGVAAVYQKN 392 >UniRef50_Q2LV83 Phage integrase family protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LV83_SYNAS Length = 364 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 59/364 (16%), Positives = 112/364 (30%), Gaps = 42/364 (11%) Query: 14 NLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDR 73 LY W G+ + R+ ++ + +A Sbjct: 2 GLYKR------GTVWWMSFSHNGEQF-----RRSTETEDRKLAIRIFDKL-KGDIAEGKW 49 Query: 74 IATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDV 133 G + +D+Y K ++YK+ V+ L+ G K ++ + Sbjct: 50 FEKLPGDSYKFKDLMDKYMTEYSAVNK----AASSYKRDKSIVTQLKSYFGEKYLTELTP 105 Query: 134 RDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 I+ + + G R + F A + NP K+ R + Sbjct: 106 AMISDYKVKRRSDGVSSRTINYELITMSHAFNLAIREWGL-ANENPVSKVKKDRVTNKIE 164 Query: 193 RLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI--QEKT 250 R E + ++ + +++ + ++ A+ TG R +I +K+S + V ++K Sbjct: 165 RWLTSEEET--NLLKESPKWLQDIIIFAIHTGLRQSEILDLKWSQVDMKRRTVTIHEQKN 222 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 +PL+ + R + F +T +G ++ L F Sbjct: 223 RCIDTLPLNETAMTVLK--------NRHNPELPLEGYVFPNTLGDRKGNRL----LLKAF 270 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRG 367 A A I FH+ R +G D QKL KT RY Sbjct: 271 YVALKKANISN-----FRFHDLRHTFATRLIRKGADLYTVQKLGRWKTVTMVQRYAHHHT 325 Query: 368 KGWS 371 + Sbjct: 326 ESLR 329 >UniRef50_C0QB98 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QB98_DESAH Length = 365 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 88/298 (29%), Gaps = 41/298 (13%) Query: 95 QDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAAGR----- 148 L + ++ + + + + +L+ Sbjct: 84 WSKYLTWASLNKRSWIDDRIRWELHISAHLKGMKMDKITPSHVQDILNHMATKDTPKGGH 143 Query: 149 --PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT-RQRLSLEEWKKIFDI 205 P + V ++ VF + G G NP + + P L + + + Sbjct: 144 YAPATIKQVLVLIKRVFNWSMQQGL-YQGGNPCKSVEAPMFDNRINNPLDKSGLRSLMSV 202 Query: 206 ADA-THRYMGNAMLLALVTGQRLGDISRMKFSDIWDD----HLHVIQEKTGSKIAIPLSL 260 D + + AL +G+R G++ + + + + L + K+ ++PL+ Sbjct: 203 LDTWNNERAILVIKFALYSGKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQSLPLNN 262 Query: 261 RLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARID 320 ++ RCR VS Y+ NT + + R A I Sbjct: 263 HCMT-------ILERCRKLKVSDYVFPSTLGN---------YYNTFDETWKRIRKRAGIS 306 Query: 321 WGEGSPATFHEQRSLSERLYKEQG----LDTQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 FH+ R G ++LLGH T + T RY + Sbjct: 307 ------IRFHDLRHTYASYLASSGKVDIYTLKELLGHSTIEMTQRYAHLVNGVLKRAV 358 >UniRef50_C4KVM9 Site-specific recombinase, phage integrase family n=8 Tax=Burkholderiales RepID=C4KVM9_BURPS Length = 339 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/358 (17%), Positives = 118/358 (32%), Gaps = 53/358 (14%) Query: 33 PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQ 92 V K + + + A + + R + A + + + T + LDRY Sbjct: 14 QVRKKGYPATSKKFATKIEALAWGRMIESEMDRGLFA-----SRNDAERTTLADLLDRYT 68 Query: 93 AIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMA 152 +SG L+++ G ++A+ + D + P+ Sbjct: 69 RDISPTKRSGG-------SDMGRAGKLKKQLGAYKLTALTASHLVDYRDARLKEVSPQTV 121 Query: 153 QVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRY 212 ++L V A + K + + +RL +E + I D ++ Sbjct: 122 VHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQGRDRRLHPDEIQAIIDATESLD-- 179 Query: 213 MGNAMLLALVTGQRLGDISRMKFSDIWDDHL--HVIQEKTGSKIAIPLSLRLNAINWSLR 270 + + + LA+ TG R G+++ +++ I H+ KT S +PLS Sbjct: 180 LRDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRTVPLSTDAVT------ 233 Query: 271 DVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR------------ 318 + R +Q V ++ LT F +A AR Sbjct: 234 ---------------ILHARRVAQCVAPFNVTSDALTRAFCRAVQRARKLYVSTCAVLDR 278 Query: 319 -IDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYHDDRGKGWSK 372 ID H+ R + E+G ++ + GHKT RY R + +K Sbjct: 279 PIDSNWLIGIRLHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHLRAEDLAK 336 >UniRef50_B6W9U7 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W9U7_9FIRM Length = 370 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 59/362 (16%), Positives = 113/362 (31%), Gaps = 45/362 (12%) Query: 27 YWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTST 86 + K P+TGK + A +L +Q + I IT + Sbjct: 19 IYLGKDPLTGKEIRTNRQGFISKKQAQIEYAKLKKQGVKSIC------------NITLNE 66 Query: 87 WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAA 146 L + + + +K + + + G K + + I +L+++ Sbjct: 67 LLKDWLPLYEPTVKYTTYT----RVYGVFKNHILPYLGNKKLDKITTPVIQKLINKKSQE 122 Query: 147 GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-----QRLSLEEWKK 201 +++ L +FK A + G YNP L P + + + EE K+ Sbjct: 123 --IADFKLINIYLNRLFKFAINQGY--TDYNPCLNIIYPTIRKEQKDMSLEYWDKEELKE 178 Query: 202 IFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEK-------TGSK 253 A + +A G R G+I + ++DI + + K + Sbjct: 179 FLYHAKKDLDQMWYLFFKIATYAGLRKGEILALTWNDIDFKNKTLTVNKSLSVTRQSKKA 238 Query: 254 IAIPLSL---RLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 I P + R +I+ + + + L + + ++ + N+ F Sbjct: 239 ITSPKTKSSIRTISIDKTTIKELYNWKIEQSKLKLQNINQYIFTTKQSELINLNSPRKRF 298 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQTD-RYHDDR 366 + + H R L E G+ D Q LGH T + T Y Sbjct: 299 ERVIKKHDLR-----KIRLHSLRHTHASLCFEAGMTIKDVQHRLGHSTSKTTMNIYIHVT 353 Query: 367 GK 368 Sbjct: 354 KS 355 >UniRef50_A3DCS0 Phage integrase n=6 Tax=Bacteria RepID=A3DCS0_CLOTH Length = 506 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 107/326 (32%), Gaps = 50/326 (15%) Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLIS--AVD 132 + ++ +L + + R +R TY + + K ++ ++ Sbjct: 167 ATDEVSVLFVDFLLEWLEMMRTR-----VRETTYASYNSGIRQSIIPYFMDKKLTLTDIE 221 Query: 133 --VRDIAQLL-DEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR-K 188 + + E P + + + A H G + NPA ++P++ Sbjct: 222 ENPKYLQDFYQHELSKGLSPNSVLRRHANIRKALQHAFHLGLIK--SNPADRIERPKKQD 279 Query: 189 ITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--------- 239 T + EE K+F A + ++LA G R +I +++ I Sbjct: 280 YTASYYTDEELAKLFKAAKGDP--LELPIVLAAYYGLRRSEIIGLRWDAIDFNPDDPKIT 337 Query: 240 -----------DDHLHVIQEKTG-----SKIAIPLSLRLNAINWSLRDVVARCRDYAVSA 283 D +VI EK G SK +PL + + + + R S Sbjct: 338 IQFTVTEVNFGDGQGNVIIEKEGTKSKASKRTLPLVKPIADLLLQKKKDIENNRRLCGSC 397 Query: 284 YLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ 343 Y + E G ++K N ++ +F+ + + FH+ R L Sbjct: 398 YNDKYLDFVHVNEIGERMKPNYISQHFALLLEKHGLK-----KIRFHDLRHSCASLLYAN 452 Query: 344 GLDTQKL---LGHKTQQQTD-RYHDD 365 G+ +++ LGH T Y Sbjct: 453 GVSLKQIQEWLGHSDISTTANIYTHL 478 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 67/240 (27%), Gaps = 31/240 (12%) Query: 22 KVNKVYW----RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 + Y+ +K GK +++ + + + N + AE + + Sbjct: 7 REKNGYYHIILNWKD-GDGKR----RSKSISTGLPVKGNKKKAEAMLLEARKTFKPEDIA 61 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLR-ERAG--MKLISAVDVR 134 GK +LDR+ K D TY + + + + Sbjct: 62 SGKNTPYHVFLDRWLKD-----KMNDFDEETYAVYSHNARVFIGPYFKSLNLQLHEIRTS 116 Query: 135 DIAQLLDEYIAAGRPR--MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 + + + ++ A G + NPA +++ Sbjct: 117 TLEAYYNHEKTKNHASKKTILQIHEIITLSLNYAIELGWIE--SNPAKGINPATDEVSVL 174 Query: 193 RLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDI-----SRMKFSDIWDDHLHVIQ 247 + + + + + + +G R I ++ +DI ++ ++ Sbjct: 175 FVDF-----LLEWLEMMRTRVRETTYASYNSGIRQSIIPYFMDKKLTLTDIEENPKYLQD 229 >UniRef50_D1PRY2 Site-specific recombinase, phage integrase family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRY2_9FIRM Length = 391 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 41/346 (11%) Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 + ++ A+T + + + + + +TY + + + Sbjct: 46 KKWLNEQAVLFEREVRHDPQPVNHAMTLAAYTEHWLRDI----APDKLAASTYSRDQQDI 101 Query: 117 SLLRERAGMKLISAVDVRDIAQLLDEYIAA--------GRPRMAQVVRSVLIDVFKEAQH 168 + G ++ + I + + R + + + L + A Sbjct: 102 RRILPALGHYKLTDLRKETIRAFYEAMRSEPKLTDGQPLSERSVEGLHNTLCSILSGAVD 161 Query: 169 YGEVPPGYNPALATKQPRRKITRQRLSLEE-WKKIFDIADATHRYMGNAMLLALVTGQRL 227 G + +NPA +P+ + ++ EE +K+ + L L TG R Sbjct: 162 EGYLT--HNPAWRVYKPKGVRKERPVADEETVQKMIAALETQSMKYEVYFKLVLATGMRR 219 Query: 228 GDISRMKFSDIWDDHLHVIQEKTGSK-----------------IAIPLSLRLNAINWSLR 270 G+ +++SDI H + ++T K + +S + + + + Sbjct: 220 GEACGLRWSDIDWRHRTIHVQRTVVKLSGQKIFTKEPKTASGNRRVYISKEMCKLLKAWK 279 Query: 271 DVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFH 330 A + A L + G + T T F K + + H Sbjct: 280 QECAWQMEQAEGQTL-TEEDYLFRQPSGDPMVPTTFTFRFKKILKENGLP----QNLSVH 334 Query: 331 EQRSLSERLYKEQGLDTQK---LLGHKTQQQT-DRYHDDRGKGWSK 372 R + L QG+D + LLGH T D Y K + Sbjct: 335 SLRHTNASLLIAQGVDVRTVAGLLGHSQPSTTLDIYAHAFDKTKRE 380 >UniRef50_A4XMZ7 Phage integrase family protein n=3 Tax=Clostridia RepID=A4XMZ7_CALS8 Length = 327 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 97/309 (31%), Gaps = 41/309 (13%) Query: 87 WLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIA 145 + + K +R +T++ ++ + G + + + L + Sbjct: 2 LVKDWLNTWLWEYKKQTLRPSTFQDYESLINNHIVPSIGHYKLKDLRPEHLQALYNSKHE 61 Query: 146 AG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFD 204 +G + + +L +A G V + A + + K + L+LEE K+ Sbjct: 62 SGLSLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKAKTKKEIRVLTLEEQKRFVA 121 Query: 205 IADATHRYMGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQE----KTGSK----- 253 + + A LLAL +G RLG++ +K+ + + + + + KT K Sbjct: 122 ALE--GERLKPAFLLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKSLPTK 179 Query: 254 --------------IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 IP+ + R + A S L E G Sbjct: 180 TMLAFQEPKTAAGIRTIPVPPVILEELKEHRKRQLEEKLKAGS--LYEDNNLVFATELGT 237 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQ 356 ++ F + + A +D FH R E Q+LLGH Sbjct: 238 PIEPRNFLRVFYRIIEKANLD------INFHALRHTYATRLLEANEHPKVVQELLGHNDI 291 Query: 357 QQTD-RYHD 364 T Y Sbjct: 292 STTLNIYSH 300 >UniRef50_A0LL76 Phage integrase family protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL76_SYNFM Length = 381 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 59/387 (15%), Positives = 124/387 (32%), Gaps = 50/387 (12%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNK---VYWRYKHPVTGK--FHALGTNEAEAIAIATEANT 57 + ++ + + + + + ++ GK G + ++ A A Sbjct: 2 PKQTRSKTKYAGVTFVEGTRADGQVERIYYIRYRRGGKLIEEKAGRQFRDDMSAARAAGI 61 Query: 58 RLAEQRTRQILAISDRIATSKGKAI-TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 R Q R A + K T + + Y K G L Sbjct: 62 RAKRMEGDQPTNEERREAEREVKERWTITRLWEEY--------KRGTPGLKGIVTDENRF 113 Query: 117 -SLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPG 175 ++ G K + D+ +L + + +P + +L + Sbjct: 114 SKHIKPIFGDKEPGELVPLDVDRLRVKMLKTHKPATVRNALELLRRIVNFGVRKQLC--- 170 Query: 176 YNPALATKQPRRKITRQR---LSLEEWKKIFDIA-DATHRYMGNAMLLALVTGQRLGDIS 231 P L+ + P ++ ++ L+ +E ++ + + + + + LAL TG R G+I Sbjct: 171 --PCLSFQIPMPRVRNEKTEDLTPDELARLLKALSEEPNTQVAHIVKLALFTGMRRGEIL 228 Query: 232 RMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 +++++DI D + + K G IPLS I + S ++ Sbjct: 229 KLRWTDIDLDRGFISIRDPKGGVDQRIPLSESARRILANHPKT--------DSLFVFPGR 280 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG----L 345 + + + + ++ ++ A + H R G Sbjct: 281 NGAQRTD---------INKSLNRIKEAAELPKDFRM---LHGLRHAFASSLASSGEVDMY 328 Query: 346 DTQKLLGHKTQQQTDRYHDDRGKGWSK 372 QKLL HK+ T RY R + + Sbjct: 329 TLQKLLTHKSPTMTARYAHLRDESLRR 355 >UniRef50_B9KV34 Phage integrase n=4 Tax=Rhodobacter RepID=B9KV34_RHOSK Length = 434 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 67/390 (17%), Positives = 120/390 (30%), Gaps = 49/390 (12%) Query: 8 NNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + + R + + + Y+ + ++ A E L Sbjct: 35 FDADIRGFAVCIYRGGGRAFTFDYRVDGRQRRMTFARWPEWSVTAARERARELRRMVDAG 94 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMK 126 + +R + + +A +DRY RL QK+ L+ G K Sbjct: 95 GDPLGER--SRRREAPRFQDLIDRYLKEHVPRLAPVSAA----DQKSMLAKLVAPYWGRK 148 Query: 127 LISAVDVRDIAQLLDEYIAAG--------------------RPRMAQVVRSVLIDVFKEA 166 L++ + D+ +LL + P A V VL +F A Sbjct: 149 LVTEITKPDVEKLLAQIAEGRARPSKAKPNNRARKLQGPKPTPVRANRVGEVLRKMFNLA 208 Query: 167 QHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGN-AMLLALVTGQ 225 +G NPA + + LS +E ++ DA + + ++TG Sbjct: 209 IEWGWRTD--NPANGFFRRIENPRERFLSKDEIDRLAKALDAAEDQRAAGIIRICMLTGA 266 Query: 226 RLGDISRMKFSDIWDDH-LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAY 284 R+G++ + +F +H L T + + ++ +R R S + Sbjct: 267 RVGEVRQSRFEQFDLEHCLWSKPAATTKQRRVHRVPISEDVSAIVRQ--RRLLVPKGSPW 324 Query: 285 LVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG 344 L G VK + + + + A+I H+ R L G Sbjct: 325 LFPGDV------PGQPVKE--IRRFWIRIQKEAQI-----EGVRIHDLRHTFASLLVSGG 371 Query: 345 LDTQ---KLLGHKTQQQTDRYHDDRGKGWS 371 + KLLGH Q T RY Sbjct: 372 ASLEMIGKLLGHTQMQTTQRYAHLMEGPLR 401 >UniRef50_Q3SHX2 Site-specific recombinase, phage integrase family n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHX2_THIDA Length = 352 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 58/366 (15%), Positives = 125/366 (34%), Gaps = 37/366 (10%) Query: 23 VNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAI 82 + +++ V K + L + A ++ + R + ++ ++ + Sbjct: 5 RKRGELQWQAIVKRKGYPLQSKTWNTRKEAEAWARQIESEMDRGVF-----VSRAEVERT 59 Query: 83 TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDE 142 T + RY+ + + +L + G ++A+ + IA D+ Sbjct: 60 TLQDLIGRYRIEVLPNKRGKHFGP--------ALRVLEQHLGKYSLAALSPKLIAGFRDK 111 Query: 143 YIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI-TRQRLSLEEWK 200 AG + ++L + A V NP +P K +RL EE K Sbjct: 112 RTKAGLSASTVKKEINLLSKLIDLAGKEWGVALPANPCAMVSRPVEKNARDRRLQPEEEK 171 Query: 201 KIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQ-------EKTGSK 253 + + ++ AL T RLG++ ++++D+ ++ K+G Sbjct: 172 YLLTACEQ---HVALLSRFALETAARLGELLALRWADVDTTKRVMVIRGIDERGTKSGDA 228 Query: 254 -IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSK 312 A+PLS ++ L+ + + S + + A+ + Sbjct: 229 LRAVPLSPAAVSVLDELKKLPRGIDGRVFYWWKASDSFSKTWGRALTRAHASYIAD---- 284 Query: 313 ARDLARIDWGE--GSPATFHEQRSLSERLYKEQGL----DTQKLLGHKTQQQTDRYHDDR 366 + A + + FH+ R + E+G+ + + GHKT RY R Sbjct: 285 -CEKAGGEPDQAFLIDLRFHDLRHEATSRLFEKGVFDSMEVASITGHKTLAMLKRYTHLR 343 Query: 367 GKGWSK 372 + +K Sbjct: 344 AEDLAK 349 >UniRef50_Q2W123 Integrase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W123_MAGSA Length = 363 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 62/363 (17%), Positives = 118/363 (32%), Gaps = 46/363 (12%) Query: 17 PLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 ++R + W+ K G + + A L + R I Sbjct: 37 KRFNRDGELIGWQAKIRRHG--FPTQSKTFDRKTDADAWARSLEGEMDRGAF-----IDR 89 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDI 136 + +T + + Y K D+ +S + I Sbjct: 90 RPAEQMTLADAIRHYLDAVAPTHKGADVEAARL----GRFLREEPDLCRYALSNLRTHHI 145 Query: 137 AQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ-RLS 195 D + A P ++L V + + V NP ++P+ R RLS Sbjct: 146 EDYRDRRLEAVAPGSLCREINLLHAVLESVRRR--VGLVDNPVSHVRRPKVNDERDVRLS 203 Query: 196 LEEWKKIFDIADAT-HRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHVIQEKTGS 252 L+E ++ DAT + ++ +++AL T R G++ +++ + H+ + K G Sbjct: 204 LDEEAQLLSALDATRNPWIKPFVIVALETAMRRGEMLALRWEHVDLVQQTAHLPETKNGK 263 Query: 253 KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSK 312 +PLS R +L + V ++L +++ Sbjct: 264 GRTVPLSSRAVKTLEALPRSI---------------------GGAVFPVSLDSLKHAWTR 302 Query: 313 ARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGHKTQQQTDRYHDDRGKG 369 ARD A + H+ R + E+G + + GH+ Q RY + R Sbjct: 303 ARDRAGL-----HHFHLHDLRHEATSRLAERGWNILELAAVTGHQDLQMLKRYTNLRAAD 357 Query: 370 WSK 372 +K Sbjct: 358 LAK 360 >UniRef50_C6NU13 Site-specific recombinase, phage integrase family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU13_9GAMM Length = 390 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 60/341 (17%), Positives = 119/341 (34%), Gaps = 43/341 (12%) Query: 44 NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGD 103 + EA+ A + RL Q Q+ + + +T +RY Sbjct: 29 TKREALQWAAQVEARLETQTPAQVYKKVE------VRELTLKAAFERYTREILPSK---- 78 Query: 104 IRLNTYKQKAKPVSLL-RERAGMKLISAVDVRDIAQLLDEYIAA-GRPRMAQVVRSVLID 161 T +++ + R + +D +AQ + +++ +VL Sbjct: 79 -APRTSRREHSLIQWWSRSLWQAVPLPNLDGPQVAQAIRAMEKENRSANTIRLMLAVLSH 137 Query: 162 VFKEAQHYGEVPPGYNPALATKQPR-RKITRQRLSLEEWKKIFDIADATHRYMGNAMLLA 220 ++ A+ NP ++PR + +R E ++ + + + + +++A Sbjct: 138 LYTIARKEWGYVDLINPVELVRKPRLPEGRDRRFVGNEEDRLLEACARKNPELADLVIVA 197 Query: 221 LVTGQRLGDISRMKFSDI--WDDHLHVIQ--EKTGSKIAIPLSLRLNAINWSLRDVVARC 276 L T R G++ + + I D + + KT +PLS R D + R Sbjct: 198 LETAMRQGEVFTLTWDRISFTDHTIKLPPELTKTRKGRTVPLSERAE-------DALKRQ 250 Query: 277 RDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLS 336 R + + + + +F KA +A ++ FH+ R + Sbjct: 251 RAR----------HNGHGNRVWSYATQDGVRASFFKAVKVAGLED-----FHFHDLRHEA 295 Query: 337 ERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 + E+GL+ Q + GHKT Q RY GK + Sbjct: 296 TSRFFERGLNAAVVQGITGHKTAQMLARYTHLSGKSLVEAV 336 >UniRef50_D1RC05 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RC05_9CHLA Length = 369 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 56/370 (15%), Positives = 114/370 (30%), Gaps = 49/370 (13%) Query: 14 NLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDR 73 + S+K Y G + + A + + +R + + Sbjct: 6 GIQKRISKKNVVSYRVQIRESDG--FPPKSKTFPTLQEAKDWQKQEKARRRQGYGSSDLM 63 Query: 74 IATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDV 133 T +DRY+ I + + + + R + G ++ + Sbjct: 64 TGKK-----TLIDLIDRYETIILP------TKPKDARNMKRHLDWWRNKIGKYGLTKISS 112 Query: 134 RDIAQLLDEYIA-------AGRPRMAQVVRSVLIDVFKEAQHY-GEVPPGYNPALATKQP 185 IAQ E + L VF + G + NP + Sbjct: 113 DLIAQCRQELAEGVTSKKTKRSHATVNRYLATLSTVFTYGINECGWITD--NPCRRVSKF 170 Query: 186 RRKITRQRLSLE-EWKKIFDIAD-ATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH- 242 R R+ E E+ ++F+ + + ++ ++LA+ TG R G+I + + I D Sbjct: 171 TESKGRDRIVAENEFTRLFEECKNSRNEHLLPVVVLAVTTGMRRGEILGLTWDCINLDRQ 230 Query: 243 -LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 + + + K G + + + + S + + Y+ + + Sbjct: 231 TIILKETKNGKQRTVSIVGEALELLRSH-----YQKRNPNTPYVFPAKKRFGKI------ 279 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL---LGHKTQQQ 358 + + +A A I H+ R E G +L +GH+T Q Sbjct: 280 ---CIRKAWDEALKRAGI-----QNLRIHDLRHTFCTYASETGASILELAAAMGHQTLQM 331 Query: 359 TDRYHDDRGK 368 +RY K Sbjct: 332 VNRYTHMNQK 341 >UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KC37_9RHOB Length = 385 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 73/382 (19%), Positives = 129/382 (33%), Gaps = 51/382 (13%) Query: 8 NNVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEANTRLAEQRTR 65 + SV L + K ++ + G+ G +A A + Sbjct: 27 FDASVRGLGLRVATSGTKSWFMMRR-FNGRMLRTTFGRYPDLTLANAR-------LKAPN 78 Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGM 125 + +SD + + K LD + + K + ++ + G Sbjct: 79 VLADMSDGLTQGQRKTDLFKVVLDEWLKKDQAKNK------SVHQVRVAMYKHALPAFGP 132 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 ++++ RD+ +L+D+ + AG P A V + F + + +PA A + P Sbjct: 133 MPVASITKRDVNRLIDKIVDAGSPVAANRVLAFTKRFFSWCKERDILEL--SPAEAIRPP 190 Query: 186 RRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD--IWDDH 242 ++ TR R L+LEE K + D G L L+TG RL ++S+ + + I D Sbjct: 191 SKEKTRDRVLTLEEIKGFWAACDQMGYPWGPIFQLLLLTGARLREVSQASWGEVSIADGT 250 Query: 243 LHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 L++ + K G I LS + I +L V L+ T+ Sbjct: 251 LNLPARRTKNGRAHQIQLSDQAINIIQALPKV--------EGQDLIFTTNGTTAVSG--- 299 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSER----LYKEQGLDTQKLLGHKTQ 356 FSK + I + FH+ R + K+L H T Sbjct: 300 ---------FSKVKKRLDI-ISGVADWRFHDLRRSFATHSTERLGISPVVADKILNHVTG 349 Query: 357 Q---QTDRYHDDRGKGWSKVAL 375 Q Y + +L Sbjct: 350 QVRGVAAIYQHGEYLEERRASL 371 >UniRef50_C4FP65 Putative uncharacterized protein n=1 Tax=Veillonella dispar ATCC 17748 RepID=C4FP65_9FIRM Length = 357 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 70/369 (18%), Positives = 118/369 (31%), Gaps = 56/369 (15%) Query: 21 RKVNKVYWRYKHPVTGKFHAL-GTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 +K ++ + GK GT + AIA +A Q Sbjct: 3 KKRADGRYQVSKLINGKRKYFYGTTKKAAIAE-RDAYVESLAQCANY------------D 49 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQ 138 ITT W + + RLK+ + NT + + G + + ++ Sbjct: 50 NTITTERWCEYWI-----RLKTDTVSQNTLSSYQYIIKTYIVPFIGSIRLVELSALNVRA 104 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ--RLSL 196 L+D + R +VL + K+A + N A K+P+++ R+ LS Sbjct: 105 LMDSM-SHLSARTISYTLTVLRAILKQAVMDEIISK--NVATLVKKPKQERKREMVTLSK 161 Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV----------- 245 EE + + D + LA TG R +I + + D+ + Sbjct: 162 EEVETFLEQIDDVEWH--ALFKLAFTTGLRRSEILGLTWDDVNLKQKTLTVNQTVLRIDE 219 Query: 246 --IQEKTGS----KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 KT + +I L + A LR V + R A + + G Sbjct: 220 VTTISKTTKNSSSRRSISLDDKTIAELLKLRTCVDKRRLKAPN---WRNNNLVFPGKFGN 276 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQ 356 +++ K T H+ R L E G++ Q LGH + Sbjct: 277 PRDPAKVSLKCKKFATAIG-----RPDFTMHDTRHTHATLLLEAGVNFKVVQMRLGHSSY 331 Query: 357 QQTDR-YHD 364 QQT Y Sbjct: 332 QQTMDTYSH 340 >UniRef50_A6G3J3 Site-specific recombinase, phage integrase family protein n=3 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3J3_9DELT Length = 363 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 54/347 (15%), Positives = 112/347 (32%), Gaps = 40/347 (11%) Query: 35 TGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAI 94 G+ + + Q +L + +A T + +Q Sbjct: 10 NGRRQTV---RKVSPVQTRRGAEAYERQLRNALLTGTYDKEAQADQAPTFRVFAREFQTN 66 Query: 95 QDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQ 153 + + +T + K + + L G + A+ R I + + + Sbjct: 67 YVAT----NNKPSTQRSKERVLRLHLIPFFGYMRLDAIGPRHIERYKATKLKDYSRKTLN 122 Query: 154 VVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRY 212 ++L + + A+ +G + + + + R L E +++ + + + Sbjct: 123 NHLTILRKLLETAREWGLIDK----VPSIRWLKAAKPEFRWLDFAEAERLLEASRCEPEW 178 Query: 213 MGNAMLLALVTGQRLGDISRMKFSDI--WDDHLHVIQE---------KTGSKIAIPLSLR 261 +LL L TG R G++ +++ D+ + V Q K+G +PLS Sbjct: 179 -RMMILLGLRTGLRQGELLALRWQDVCFEARRIAVRQAVAEGILGTPKSGRAREVPLSPA 237 Query: 262 LNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDW 321 A + R S ++ G + +ARD A ++ Sbjct: 238 TLAEFVRHQARYRHLR----SPWVFCQLDG---DHAGEMLTKGMCKWPLRRARDRADLEA 290 Query: 322 GEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDD 365 +H+ R +G+ Q+LLGH T + T RY Sbjct: 291 -----LGWHDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHL 332 >UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella RepID=A5I9N5_LEGPC Length = 407 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 62/381 (16%), Positives = 128/381 (33%), Gaps = 39/381 (10%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTG--KFHALGTNEAEAIAIATEANTR 58 + A+ ++ + + N W Y++ + G LG A +++ A Sbjct: 12 LKAKEKRYEEFEGGGFGIRITPNNVKTWIYRYKINGVTTKFTLGHYPAMSLSNAKRRFLE 71 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL 118 L++ R + + A + T + ++ + + + Sbjct: 72 LSQMRREGVDPKTVIQAQEEQDNNTVDKLALNWYTNYIEKHVKRPLVIKRQID-----ND 126 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + G K + V +DI+ LD + G +A S + +F A G +NP Sbjct: 127 IIPLLGKKKLDDVQTKDISDALDTIVKRGARILANRTLSSIKQMFNYAVSRGY--TQFNP 184 Query: 179 ALATKQPR----RKITRQRLSLEEWKKIFDIADATHRYM----GNAMLLALVTGQRLGDI 230 A + K + L+LEE K ++ D+ M A+ L L+TG R ++ Sbjct: 185 ASNIRSRDIGGIEKPKERVLTLEEIKALWLFLDSDLTQMSTQTRIAIKLLLLTGVRTVEL 244 Query: 231 SRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHF 288 + +I + + + + I + L A + + + + + S Y++ Sbjct: 245 RLASWHEIDFEASLWTIPALHSKASIIHKVHLSKLA-----KSLFLQLKPLSHSDYVLTG 299 Query: 289 FRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ----G 344 + N L + ++ I T H+ R E Sbjct: 300 VDGF------HPITENALPRAIKRIQEKLGIPD-----WTAHDLRRTFATQLGETLQIDP 348 Query: 345 LDTQKLLGHKTQQQTDRYHDD 365 + +K LGHK + Y+ + Sbjct: 349 VVIEKCLGHKMPRIMATYNRN 369 >UniRef50_C5SDU6 Integrase family protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SDU6_CHRVI Length = 361 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 61/342 (17%), Positives = 112/342 (32%), Gaps = 22/342 (6%) Query: 41 LGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLK 100 +G + + T ++ +G+ T + RY+ Sbjct: 22 IGQDGETSRTFKTRTAAERWARKFEAAALEDRAGLIMEGQKHTLKDAIKRYRTEILP--- 78 Query: 101 SGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLI 160 D T A+ + G +S V IA DE + + P +VL Sbjct: 79 --DHTATTRPTYAQRLDYWCAELGHLRLSDVTPAKIAGCRDELLTSKAPATVHGYLAVLA 136 Query: 161 DVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADA-THRYMGNAML 218 V +P +P R R LS +E ++ + A + A++ Sbjct: 137 SVLTTCVKRWH-WVKESPMAHVDKPSVANGRTRFLSQDELSRLLEACRASESPDLYLAVV 195 Query: 219 LALVTGQRLGDISRMKFSDIWD--DHLHVI-QEKTGSKIAIPLSLRLNAINWSLRDVVAR 275 LA+ TG R G++ +++ D+ D L++ +T +K + + + L A Sbjct: 196 LAITTGARRGELLGLRWRDVDLVKDVLYLRVDNETTTKGGVRAVRIASQVKPILEARQAG 255 Query: 276 CRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSL 335 R V+ S+ V L F A A I +H+ R Sbjct: 256 YRRGKVADITGAALVFPSRVSTRQPVD---LRTPFRTALRRAGI-----EGFRWHDLRHS 307 Query: 336 SERLYKEQG---LDTQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 + G ++ +LGH++ Q T RY + ++ Sbjct: 308 AASFMAAHGASLVEIGAVLGHRSAQTTKRYAHLAEQAAHELV 349 >UniRef50_B8J3W5 Putative uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J3W5_DESDA Length = 337 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 61/356 (17%), Positives = 127/356 (35%), Gaps = 54/356 (15%) Query: 21 RKVNKVYWRYKHPVTGKFHALGT--NEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 RK + W + G T +++A A + + + ++ Sbjct: 5 RKRGDLQWEARIRRKGWPVTCKTFNTKSDAEKWARDIENEMDRGV---------FTSRTE 55 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 + T + L+R+ A R + + T K +A + + ++A+ +DIA Sbjct: 56 AENTTLNEALERFIAEYVPRYNNPKLE--TIKARALQRRKIATKF----MAAIRSKDIAD 109 Query: 139 LLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR-KITRQRLSL 196 + E A G ++ +++ VF A + NP +P+ +RL Sbjct: 110 FMQERAAEGVAGNTIRLDLALISRVFNVAISSWGMESLRNPVSRIPKPKVSSGRTRRLEG 169 Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD--HLHVIQEKTGSKI 254 +E +++ + + + A+ T R G+++ + + +I + ++ + K + Sbjct: 170 DEEERLLAACSDS---LRPIVRFAIETAMRRGEMASLTWQNIDLEKSTAYLPKTKNNEER 226 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 +PLS I +L ++ R Q+ ++T F K Sbjct: 227 TVPLSPAAVQILKNLEK---------------------GESARVFQLSDVSITQAFIKTC 265 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKEQ----GLDTQKLLGHKTQQQTDRYHDDR 366 I TFH+ R + E+ ++ + + GHKT Q RY R Sbjct: 266 QKVGI-----EGLTFHDLRHEATSRLFERTDLDIMEIKSITGHKTLQMLARYSHLR 316 >UniRef50_B2V4P6 Phage integrase family protein n=9 Tax=root RepID=B2V4P6_CLOBA Length = 382 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 65/378 (17%), Positives = 125/378 (33%), Gaps = 50/378 (13%) Query: 19 YSRKVNKVYWRYK-HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 +K N+ Y+ ++ V GK + + A +A + ++ + Sbjct: 5 VRKKGNRWYYYFEAGRVNGKRKRIERKGGDTKKEAQQALRMALNE-------FNNTGSYV 57 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRDI 136 ++ S +LD + + + + NT + +++ L+ G+ I ++ + Sbjct: 58 NETNMSFSDFLDYWFDEYVMK----NCKYNTQQTYKSFININLKPNLGIYKIKQLNYAAL 113 Query: 137 AQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQH-YGEVPPGYNPALATKQPR---RKITR 191 + L++ A G +RS++ + A Y + NPA PR Sbjct: 114 QEFLNKQYAHGYSKNTLARLRSIISHSLEMAVSPYQFIK--VNPAKNLTLPRFDNIAKEN 171 Query: 192 QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEK-- 249 +S+E + KI + +A TG R+G++ + + + + + EK Sbjct: 172 IVISIENFNKIIGRF-PCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFEKKTIRIEKIL 230 Query: 250 ---------------TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 GS I + L I + ++ + S Y + Sbjct: 231 IFKTKQGYEFSTPKTKGSIRTISIGDTLINILKTHKNWQEENKKNYGSYY--NDNNFVCT 288 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLL 351 E G+ V +L S+ I+ FH R + E G D Q L Sbjct: 289 KENGSFVTMTSL-RYLSRI-----INMELQIKFNFHSLRHTHATMLLEGGANIKDIQDRL 342 Query: 352 GHKTQQQTDR-YHDDRGK 368 GH T Y K Sbjct: 343 GHSKFSTTMDLYSHVTAK 360 >UniRef50_B8GSD9 Integrase family protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSD9_THISH Length = 361 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 34/349 (9%) Query: 35 TGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISD-RIATSKGKAITTSTWLDRYQA 93 +GK+ A + A A +A+ + + T RY Sbjct: 9 SGKWRAQIRRRGQYRADTFLTREAAARWARATEVALEKGELEPVPAQGPTVEELARRYIE 68 Query: 94 IQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQ 153 + K + + + R G L +V DI ++L A G P A Sbjct: 69 EYARQHKR-----SWKRDHEHLERDVLPRLGEMLAGSVTRGDIREMLSGVAARGAPVAAN 123 Query: 154 VVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADA---- 208 V +V ++ A + NP L K P +++R L++ E + + D Sbjct: 124 RVLAVCKKMWNWALDHEVSGIETNPCLRIKPPAPTRSKERVLTMSEIRTLLAALDRDEMP 183 Query: 209 ------THRYMGNAMLLALVTGQRLGDISRMKFSDIW--DDHLHVI--QEKTGSKIAIPL 258 R A+ L L+TGQR G+++ M +++ D + + K G +P+ Sbjct: 184 AGCRAWPTRATRVAIQLILLTGQRPGEVAGMALTELDRQDGWWTIPGERAKNGRAHRVPI 243 Query: 259 SLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLAR 318 A L D R SAY+ R S R + A ++ ++ R+ Sbjct: 244 C----AGAKRLIDEALALRLDPKSAYVFPSPR-RSGGRRDRAIAAEAISRAVTRLREHVG 298 Query: 319 IDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHD 364 I T H+ R G+ +LL H + T Y Sbjct: 299 IPH-----WTAHDLRRTCASHLAGLGVSREVIARLLNHTDRSVTSIYER 342 >UniRef50_B2TMD1 Prophage LambdaBa04, site-specific recombinase, phage integrase family n=3 Tax=Clostridium RepID=B2TMD1_CLOBB Length = 386 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 119/384 (30%), Gaps = 53/384 (13%) Query: 19 YSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 +K N Y+RY V G + A + ++ +L K Sbjct: 5 VRKKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNGLL---------K 55 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIA 137 K I +L + + NTY + V + + G+ + + V +I Sbjct: 56 PKEILLKDYLKIWLEDYVK----PNNSENTYIKYKGTVNKYINPQLGLIKLCDLKVINIE 111 Query: 138 QLLDEYIA-AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI-TRQRLS 195 Q L + Q VL +A + NP P+R L+ Sbjct: 112 QFLSKLKKTKLSLTTIQKHYLVLNGALNKAIKLQML--NDNPCKYVDTPKRSKYKASILT 169 Query: 196 LEEWKKIFDIADA---THRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQE---- 248 EE I+ + M M L + TG R G++ +++SDI D+ + Sbjct: 170 FEELHSIYTNLNTKIYEDYIMKLGMDLTIETGLRRGEMCGLQWSDIDFDNKILNVNTALI 229 Query: 249 -----------KTGSK-IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLV--------HF 288 KT S +PLS + I S + + + ++ Sbjct: 230 RVNNDYKISNLKTDSSYRKLPLSNEIIKILKSHKSKQNINKIKYGNNFVYSNKFDGDSTE 289 Query: 289 FRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD-- 346 + E G + + + +I+ +H+ R + + + + Sbjct: 290 YNLIFTWENGRYIIPSNFLQRLKRLCKYCKIE----KNIRWHDLRHSNATILLKNKISMK 345 Query: 347 -TQKLLGHKTQQQT-DRYHDDRGK 368 Q+ LGH Q T D Y + Sbjct: 346 VIQERLGHSLMQTTSDIYAHVTEE 369 >UniRef50_C0XLK8 Phage integrase family site specific recombinase n=6 Tax=Lactobacillales RepID=C0XLK8_LACHI Length = 401 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 63/386 (16%), Positives = 133/386 (34%), Gaps = 50/386 (12%) Query: 19 YSRKVNKVYWRY-KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 +K N Y+ + + GK + + + A EA R A Q+ + + + Sbjct: 22 VRKKGNNWYYAFDTGTLNGKRSRIERSGGKKKKQA-EAPLRQALQKYE------NDGSVA 74 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDI 136 K + + + R +++ NT + + + G I ++ + Sbjct: 75 KLTNMNVQQYFMYWYENYVQR----ELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAAL 130 Query: 137 AQLLDEYIA-AGRPRMAQVVRSVLIDVFKEAQ-HYGEVPPGYNPALATKQPR-------R 187 L+++ Q++ V+ + FK+A Y + PA P+ Sbjct: 131 QNLVNDLGETKLAKHTVQIIVMVIKEGFKKAVYPYQLIKED--PARYIIMPKYHDDERIT 188 Query: 188 KITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI- 246 + + +++ ++++I I ++ + + +A TG R G++ + ++++ + + Sbjct: 189 RKKLKIITMNQYEQILSITPPSNPFYIP-LQIAFGTGMRRGEVCGLTWTNVDLNGHTIEV 247 Query: 247 ------QEKTGSKIAIPLSL---RLNAINWSLRDVVARCRDYAVSAYL-----VHFFRST 292 + K I P + R +I SL D++ + + + + L H Sbjct: 248 KQAMMQESKGKFSIVTPKTTSSYRTISIGESLVDLLRQHKKHQMEERLRYGQYYHESNFV 307 Query: 293 SQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQK 349 E G V NT+ + + P FH R + E G D Q Sbjct: 308 CTKENGIPVTPNTIKYQCDRIQKELG------FPFNFHSLRHTHATMLLEHGANIKDIQA 361 Query: 350 LLGHKTQQQTDR-YHDDRGKGWSKVA 374 LGH T Y K + Sbjct: 362 RLGHSRIATTMDTYSHVTHKMQRQTV 387 >UniRef50_B8D1P6 Phage integrase family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1P6_HALOH Length = 391 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 60/375 (16%), Positives = 122/375 (32%), Gaps = 57/375 (15%) Query: 32 HPVTGK---FHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWL 88 P TGK + G + E TE +L S+ + WL Sbjct: 27 DPQTGKQKRKYFYGKTKKEVAKKMTELKMKLFNG------------TYSEPSEMKLIDWL 74 Query: 89 DRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEYIAAG 147 R+ + + +TY+ ++ L + G + + R + +LL++ + G Sbjct: 75 HRWIE-----GRKSTLAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQELLNDKLEKG 129 Query: 148 R--------PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEW 199 + PR + + S L ++A +P A+ + + + + ++ Sbjct: 130 KVYGEGGLSPRTVKYIYSTLHTALEQAVKENMIPRNICKAVEVPKKQEEKKLHTWNKKQV 189 Query: 200 KKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW---------------DDHLH 244 A ++ + LAL TG R G++ +++ DI D+ L Sbjct: 190 NIFLKAARDYKYFILHY--LALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLARTDEGLI 247 Query: 245 VIQEKTGSK-IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 + KT S IP++ + + + A+ + G + Sbjct: 248 FKKVKTKSGNRTIPITDNVVRELKRH-QIKQGEKRLALGEAYNKKADLVASNGIGNPIDP 306 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ---GLDTQKLLGHKTQQQT- 359 L +F + + +H+ R L+ E Q++LGH + T Sbjct: 307 RNLVRDFKDIIEETGLPEIR-----YHDLRHTFATLFLEAKGPIKTLQQILGHSSITVTI 361 Query: 360 DRYHDDRGKGWSKVA 374 D Y + + Sbjct: 362 DTYSHVTEEMLIEAE 376 >UniRef50_B8I354 Integrase family protein n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I354_CLOCE Length = 413 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 105/362 (29%), Gaps = 61/362 (16%) Query: 53 TEANTRLAEQRTRQILAISDRIATS---KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTY 109 + ++ +Q++ + + + + +T S +++ + K +I T+ Sbjct: 38 RLTEKQREKELQKQVVLFEEEVKSGSYYEPTKMTMSEFIELWLD-----KKKNNIESKTH 92 Query: 110 KQKAKPVS-LLRERAGMKLISAVDVRDIAQLL----------DEYIAAGRPRMAQVVRSV 158 + + + + + G I + + D Sbjct: 93 QGYSGLLKGRVLKVMGDTKIIDLKPLHLINFYENLQELGIREDGREGKLSTNSILHYHRA 152 Query: 159 LIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAM 217 L +F + +G + NP + P+ L ++ ++ + + Sbjct: 153 LNAMFGDGVRWGLIKE--NPCSKVRPPKVVKKEMSCLDEDQIPQLISALCNEPIDISTFI 210 Query: 218 LLALVTGQRLGDISRMKFSDI--WDDHLHVIQE--------------KTGSKIA-IPLSL 260 L LVTG R G++ +++ ++ D+ + V Q KT S I I + Sbjct: 211 TLDLVTGLRRGELCGLQWDNVNLKDNTIVVEQAVSYTPETGTIIKTPKTKSSIRKITIPK 270 Query: 261 RLNAINWSLRDVVARCRDYAVSAYL-------------VHFFRSTSQAERGAQVKANTLT 307 + + R + + G + +TLT Sbjct: 271 TTSDLLSIYRKWWLEQKIKVGDQWQKSAREEVEKNGQTWEDPEYLFTTWDGYVMHPDTLT 330 Query: 308 MNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQT-DRYH 363 F K + H+ R + + GL+ +GH+ T Y Sbjct: 331 KTFKKFIKRNNLPDIR-----LHDLRHTAATMLIHAGLNIRAVAARMGHENPNVTLAIYS 385 Query: 364 DD 365 Sbjct: 386 HA 387 >UniRef50_A3VAJ4 Site-specific recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VAJ4_9RHOB Length = 392 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 135/365 (36%), Gaps = 45/365 (12%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRLAE 61 R + V L+ S KV++ + + + +G ++A A +A Sbjct: 25 KRYEVRDQKVNGLHVRVSTTGAKVFYTLVRPNGSRRRIKIGPYPVVSLADARRRAMEIAR 84 Query: 62 QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE 121 + + A T + ++ + + NT K + S+L + Sbjct: 85 DVELGEFEKT--PEVPEASADTLGEMIPKFIELHA--------KPNT-KDWKRTESVLHK 133 Query: 122 R--AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 + I + +D++++LD IA G P A S + + G++ +P Sbjct: 134 FDGLKDRPIDQIRRQDVSKVLDGIIANGTPTRANRALSAIKKLMNWCVMRGDIET--SPV 191 Query: 180 LATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS-- 236 + P R++ R R LS E + I+ +DA G + L L++GQR +++ M++S Sbjct: 192 ALLRPPTREVQRDRVLSDAEIRAIWQHSDAEDYPFGPFLKLLLISGQRRSEVAGMRWSEL 251 Query: 237 DIWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 ++ + + + K +PL ++ D++ + S ++ ++ Sbjct: 252 NLDEGIWELPANRVKNARLHIVPLPVQAV-------DILRGLHRFLDSDFVFTTTGRSAI 304 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSP-ATFHEQRSLSERLYKEQGLDTQ---KL 350 + F + ++ EG+P FH+ R + + G+ + Sbjct: 305 SG-------------FGRLKERVDTALPEGTPDWRFHDFRRTASTGMAKLGVMPHVIDAV 351 Query: 351 LGHKT 355 HK+ Sbjct: 352 TNHKS 356 >UniRef50_B8R670 Integrase n=4 Tax=root RepID=B8R670_9CAUD Length = 368 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 109/365 (29%), Gaps = 42/365 (11%) Query: 22 KVNKVYWRYK--------HPVTGKFHALGTNEAEA-IAIATEANTRLAEQRTRQILAISD 72 K W ++ PVTGK ++ ++ +A L E +RQ S Sbjct: 6 KNENGNWAFRAFWFEHSIDPVTGKTVLTRKSKFQSGFNTKRQAQIALGEFESRQAQGESV 65 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 + D Y +R T + + I + Sbjct: 66 LANPP---------FFD-YAEDFIKYNVENRVRPATLTAYKVALKRIESNFPNIPIKQIT 115 Query: 133 VRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR- 191 LL++ V + K A G V + + + + Sbjct: 116 RSMFQSLLNQLSIKYSKSTVNQTAVVFSQIMKLALADGLVVRDVTSFVQIPEKAQDKRKI 175 Query: 192 QRLSLEEWKKIFDIADATHRYMGNA---MLLALVTGQRLGDISRMKFSDIWDDHLHVIQE 248 LSL + K + A +L A+ TG RL +++ + + D+ + + ++ Sbjct: 176 DYLSLADVKTLVSHIKDNLNTTRVAPYFILTAIETGARLSELAALTWDDLTPTSITITKQ 235 Query: 249 KTG----SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKAN 304 + SK S+R +I L +++ + V+ + Q G + Sbjct: 236 RNRDGIVSKPKTESSVRTVSITKDLYNLLQDLK--------VNKKKLIFQQPNGIVPDPS 287 Query: 305 TLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQ-QTD 360 +L + I FH R L G+D + LGHK T+ Sbjct: 288 SLNFALKRLMKECGIKR---HGFHFHSLRHTHVALLLNAGVDILTISQRLGHKNVSTTTE 344 Query: 361 RYHDD 365 Y Sbjct: 345 IYAYL 349 >UniRef50_Q3ABG2 Prophage LambdaCh01, site-specific recombinase, phage integrase family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ABG2_CARHZ Length = 371 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 57/369 (15%), Positives = 108/369 (29%), Gaps = 48/369 (13%) Query: 21 RKVNKVYWRYKH---PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 RK Y + GK + A + + + ++ Sbjct: 6 RKRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFPEK---- 61 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDI 136 IT +L+ + ++ T ++ + + V DI Sbjct: 62 ----ITLKEFLNYWLENYV----RPNLSPTTAYGYEAIINLHIIPFFKNIELQKVRPIDI 113 Query: 137 AQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI-TRQRLS 195 Q + + +L F A +P NP P+ K + L Sbjct: 114 QQYYNSKRDELSGKTLLQHHRILHKAFDFAMKLQLIPN--NPIDFVDSPKAKKYKAKILD 171 Query: 196 LEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD-------------- 241 L+E K + + T + + LAL G R G++ +K+ D+ + Sbjct: 172 LKEIKTLLNALKDTD--LEVPINLALSLGLRRGELLALKWEDVNWEEGTIQIRRNLVRAG 229 Query: 242 -HLHVIQEKTGSKIA-IPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 L + + K+ + I + LS L + + R + + Y G Sbjct: 230 TKLILKEPKSETSIRTLKLSKTLLTMLKNHRKKQIELKLMLGNEY--KDTGFICCKNNGE 287 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQ 356 + +T + FS + H+ R + L + + + LGH T Sbjct: 288 MINPSTFSHQFSDFLKKHGLPDIR-----LHDLRHTNATLMLKSNIPAKIASSRLGHSTV 342 Query: 357 QQT-DRYHD 364 T D Y Sbjct: 343 AITLDLYSH 351 >UniRef50_A7VZ12 Putative uncharacterized protein n=2 Tax=Clostridium leptum DSM 753 RepID=A7VZ12_9CLOT Length = 414 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 61/375 (16%), Positives = 111/375 (29%), Gaps = 50/375 (13%) Query: 24 NKVYWR----YKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 K Y+ Y + + +A L + R Sbjct: 20 KKGYYYAVLSYYDSKNKRHVKYISTGLPEKGNKRKAEAELVKIRNAFEPPAE---IGELC 76 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKL--ISAVDVRDI 136 + + +L + I R+K T+ V + K + ++ R I Sbjct: 77 SNMLFADYLLGWLEIVKVRVK-----PTTFGSYESMVKQTIEPYFRNKPITLKDLEARHI 131 Query: 137 AQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI-TRQRLS 195 Q E + +P +V+ K A V N A+ +P++ L Sbjct: 132 QQFYSEKLKTVKPNSVIHYHAVIHQALKYAMKTDLV--AQNVAMKVDRPKKNDFQPVFLD 189 Query: 196 LEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQE----- 248 E + +FD+ T + +L+A G R G++ +K+ D L + + Sbjct: 190 AAELQHLFDVVKGTK--LELPVLVAAFYGLRRGEVLGLKWDAIDFERGTLTIKRTVTSVN 247 Query: 249 -------------KTGSK-IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQ 294 KT S +PL R ++ + + Y + Sbjct: 248 VGGKTQVIEQESAKTKSSMRTLPLVGRFREYFAEVKAAQELNKQVCGNCYNYEYDGFVFV 307 Query: 295 AERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL---L 351 E G ++K + LT F + FH+ R L G+ +++ L Sbjct: 308 DELGERMKTDYLTSQFPAFIQRHGMKKMR-----FHDLRHSCASLLLANGVPLKQIQDWL 362 Query: 352 GHKTQQQTD-RYHDD 365 GH T Y Sbjct: 363 GHSDFSTTANIYAHL 377 >UniRef50_A9VJZ8 Integrase family protein n=15 Tax=Bacillus cereus group RepID=A9VJZ8_BACWK Length = 370 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 56/373 (15%), Positives = 117/373 (31%), Gaps = 49/373 (13%) Query: 17 PLYSRKVNKVYWRYK---HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDR 73 ++K K ++ P+TG+ A A T+L L+ Sbjct: 5 VKKNKKTGKYFYIVDIGIDPLTGRRKQKKKRGFITKKEAENALTKL--------LSEVHT 56 Query: 74 IATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVD 132 + + +L+ + + + T K ++ + G ++ + Sbjct: 57 GTYVEPSKLLYGEYLESWFNTKKYSVGIQ-----TAKVLKGYLNSRIIPSLGNIKLAKLT 111 Query: 133 VRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 + ++ G + + + ++ + + A + N A TK P+ Sbjct: 112 SLHMQNYVNSLRDEGLKRGTIEKIIKLIRNSLEHAIDLELITK--NVAAKTKLPKADKEE 169 Query: 192 -QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD--DHLHVIQE 248 + E + A + + +ALVTG R G++ ++ D+ HL + Q Sbjct: 170 LTVWNEHEVQFFLKAAQDSRYSI--VFHMALVTGMREGELLGFRWKDVDLEKGHLTISQT 227 Query: 249 ------------KTGSK-IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 KT S I L A R VV + + Y + + + Sbjct: 228 LSHDGKTFLLGGKTKSSLRKILLPASTVAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPS 287 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLG 352 G + + + + + FH+ R L +G++ + + LG Sbjct: 288 --GTPINPANVRRSLNALIKKVAVP-----KIRFHDLRHTHATLLLAKGVNVKVISERLG 340 Query: 353 HKTQQQT-DRYHD 364 H + T D Y Sbjct: 341 HSNIKITLDTYSH 353 >UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella silvestris BL2 RepID=B8ERI0_METSB Length = 400 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 60/367 (16%), Positives = 128/367 (34%), Gaps = 37/367 (10%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 A R + LY + K + +R+ K +G+ A ++ A A Sbjct: 17 AKRCEVPDGHTRGLYFVVQPSGAKSWAYRFSFEGKPKKLTIGSYPAIDLSRARSIALASA 76 Query: 61 EQRTRQILAISDR-IATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL- 118 + +++ + K + + +D A + R + K+ + + Sbjct: 77 TKVANGRNPAAEKKVEREKARKPSDLDLVDVVVAQFVVKHVEPKTRPQSAKEMKRILKRE 136 Query: 119 LRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 + R + ++ + DI LL+ P MA V V+ + + + +P Sbjct: 137 ILSRWSGRRLTEITRSDIRDLLEAIADR-APIMANRVFEVISSLINWSISMEML--SASP 193 Query: 179 ALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 ++P R R LS +E ++ ++ G+ + + +++GQR ++S M +S+ Sbjct: 194 IAGLRKPSPAKRRDRILSEKELTDVWQASERAGWPYGSMIKVLILSGQRRSEVSDMTWSE 253 Query: 238 IWDDHLHVI----QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTS 293 I + + K G IPLS + + +L + Sbjct: 254 IDFEERSWTLPAVRTKNGKGHIIPLSPTIIDVLLTLPRI--------------------- 292 Query: 294 QAERGAQVKANTLT--MNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQ 348 +E G N + NF++ + + + T H+ R ++ + Sbjct: 293 GSESGFVFTTNGFSPIRNFARRKKALMMSCQSENNWTLHDLRRTFATGMARLKVELPVVE 352 Query: 349 KLLGHKT 355 KLL H + Sbjct: 353 KLLNHSS 359 >UniRef50_A1HTM7 Phage integrase family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTM7_9FIRM Length = 393 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 72/387 (18%), Positives = 124/387 (32%), Gaps = 50/387 (12%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 M R K S+ Y ++ TGK A A A Sbjct: 1 MGKRRAKGEGSI---YQRNDGLWVAAIVVGRNADTGKPV---RKVVYARTKAE------A 48 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LL 119 +Q+ + A + IT WL ++ + + +TY + L Sbjct: 49 KQKRDALAAQYEAAYYVDADKITVGDWLAKWLDVY----ARPAVAPSTYDWYERICRVHL 104 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGR-PRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 G +S + + QLL+ + AG+ R Q V SVL + A+ +G + P Sbjct: 105 IPAIGHLRLSRLQQMAVQQLLNSLVDAGKSARTVQAVHSVLAMALRVARKHGLLRTL--P 162 Query: 179 ALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 P+ + +R L+ +EW + A A+++ TG R G++ + + D Sbjct: 163 TDDVAVPQVRKQDKRPLTPDEWDALLTAAQTAPDIFA-ALVVEWATGLRRGELLGLMWDD 221 Query: 238 IWDDHLHV---------------IQEKTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAV 281 I D + KT + K +P+ + + + R +CR A Sbjct: 222 IDFDRCLINVRRAVQIRRGGCVLADPKTEATKRVLPVPKEVMQVLRAHRARQMQCRLAAG 281 Query: 282 SAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYK 341 A+ G + F++ A +D H R Sbjct: 282 PAWQDCGL--VFPTSGGTLYDPRNWSKRFARIAKAAGLD------IGVHHLRHDLTSRIV 333 Query: 342 EQGLDTQK---LLGHKTQQQ-TDRYHD 364 G ++ LGH T + D Y Sbjct: 334 AAGAPVKEAQYRLGHATVKMLLDVYAH 360 >UniRef50_A7HPZ7 Integrase family protein n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPZ7_PARL1 Length = 389 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 61/382 (15%), Positives = 118/382 (30%), Gaps = 40/382 (10%) Query: 9 NVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQIL 68 + ++P S+ + H K +G ++ A +A ++ +RT Sbjct: 23 DDTLPGFGVRVSQ-GGVKSFVVVHGRNRKRTTIGRYPTISLQDARKAAKQILAERTLG-- 79 Query: 69 AISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKL 127 + I L + A + T + + + + Sbjct: 80 -------KHEAPPIDFEAGLKLFLA---AHFPENYPKPRTRAETKRQLEKHFLPSLRHEK 129 Query: 128 ISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR 187 + + R+I++++D+ P A+ +V+ F A G V +P + P++ Sbjct: 130 LEHIQAREISRIIDKMHK--TPGEARHAFAVIRLFFNWAFRRGYV--DRSPCERLQAPKQ 185 Query: 188 KITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV- 245 + R R L+ +E + + A + + L L+TGQR G+I+ ++ I D + Sbjct: 186 SLPRDRVLTQDEIRTVLGHARERDTTFNSIVQLLLLTGQRRGEIASLQADWIDFDSRTIT 245 Query: 246 ---IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 K + A P I + R+ RG Sbjct: 246 LPATVTKNKRQHAFPFGEMAEVILKRALLQAQQSREERREYEDADEKALLLFPARGKHTA 305 Query: 303 ANTLTM---NFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGH--- 353 + + NF K T H+ R G+ +KLL H Sbjct: 306 FDGWSKGKPNFDKGC--------PIDHWTLHDLRRTCATNLAALGVPVHVTEKLLNHISG 357 Query: 354 KTQQQTDRYHDDRGKGWSKVAL 375 T Y + A+ Sbjct: 358 TTSGIVAVYQRHAYMDEMRDAI 379 >UniRef50_B0KAZ5 Phage integrase family protein n=3 Tax=Thermoanaerobacter RepID=B0KAZ5_THEP3 Length = 403 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 57/386 (14%), Positives = 117/386 (30%), Gaps = 69/386 (17%) Query: 34 VTGKFHAL-------GTNEAEAIAIATEANTRLAEQR--TRQILAISDRIATSKGKAITT 84 + GK + + G + + E + Q+ ++I+ IT Sbjct: 12 IKGKKYKISFYIGTDGNGKRKYYIETIECKNKAEAQKYLAKKIVEYDTGTLPIDETNITV 71 Query: 85 STWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLDEY 143 +L ++ K + L TY + + + G + + I + + Sbjct: 72 KDYLKKWLET-----KKSSLALKTYNDYEQKIRLYINPAIGNYKLLKLTPLIIQNMYNNM 126 Query: 144 IAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKK 201 + G R + +VL + K+A + + YNP T P++ + L+ E+ KK Sbjct: 127 LEQGLSARTIRYTHTVLNEALKQAIKWQMLR--YNPCDGTTLPKQAKKEMKVLTPEQAKK 184 Query: 202 IFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD---------------DHLHVI 246 + + G L L++G R + +K+ DI ++ + Sbjct: 185 FLEAC--VYNRWGILFELLLISGMRPSEALGLKWEDIDWKNNRIAVQRTLTRVKNNWQLK 242 Query: 247 QEKT-GSKIAIPLSLRLNAINWSLRDVVARCR----------------------DYAVSA 283 + KT S+ IPL + R ++ + + Sbjct: 243 EPKTPQSRRTIPLPREVMNDLKEHRKQQSKEKLKAKEYINYDKDKNKFKPEEWEEKLKDP 302 Query: 284 YLVHFFRSTSQAERGAQVKANTLT-MNFSKARDLARIDWGEGSPATFHEQRSLSERLYKE 342 + + E G + + F A + ++ R L Sbjct: 303 KVYVDYGLVFATETGRPLDLANINYQYFKPLLKNAGLPNIR-----LYDLRHTCATLLLL 357 Query: 343 QGLDTQ---KLLGHKTQQ-QTDRYHD 364 G + + + LGH D Y Sbjct: 358 AGENPKVVSERLGHANITLTLDTYSH 383 >UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus taiwanensis RepID=B3R9I1_CUPTR Length = 412 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 69/379 (18%), Positives = 130/379 (34%), Gaps = 37/379 (9%) Query: 14 NLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ-RTRQILAIS 71 LY K + RY + K LGT IA A + + + E L + Sbjct: 26 GLYLRLEPSGTKTFCLRYTVAGSRKLKVLGTFPDMDIAAARKQASEMRELLEVHDSLPSA 85 Query: 72 DRIATSKGKAITTSTWLDRY-QAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISA 130 + + IT + + R K D L+ K + G +L+ Sbjct: 86 SKEVDALTSPITVAQLATEWEMRYCRQRYKRPDKELHYLKSD------IVPVIGQELVQN 139 Query: 131 VDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ---PRR 187 V R ++ ++ + + G A VL +F A +G + P TK+ Sbjct: 140 VTGRHVSLVIGKIVDRGARTKANRTLCVLKSLFGYAVEHGYI--DATPVAMTKKGAGGAE 197 Query: 188 KITRQRLSLEEWKKIFDIADATHRYM----GNAMLLALVTGQRLGDISRMKFSDIWD-DH 242 K + L+ +E + ++ D+ R M + L L+T QR G+ M++ D+ + Sbjct: 198 KARSRVLNPKEIETLWHALDSRRRRMNWRTKALLKLILLTAQRPGECCGMRWEDVDLANG 257 Query: 243 LHVIQ---EKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 + + K+ + LS +I ++ S Y+ + Sbjct: 258 IWFLPAELTKSDRDHVVHLSHMAVSILKM------AEKETGGSVYVFNSVVKGRDV---- 307 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGHKTQ 356 + LT ++ A ++G T H+ R + G+ +K+L H+ + Sbjct: 308 ATTVDALTRAVARML--ANGEFGAMKRFTPHDLRRTASTGMANAGVYPHITEKILNHRMK 365 Query: 357 QQTDRYHDDRGKGWSKVAL 375 Y+ K A+ Sbjct: 366 GVLAVYNHGEYLPERKAAM 384 >UniRef50_A6Q5N8 Site-specific recombinase, phage integrase family n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q5N8_NITSB Length = 365 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 66/373 (17%), Positives = 126/373 (33%), Gaps = 37/373 (9%) Query: 6 RKNNVSVPNLYPLYSRKVNKVY-WRYKH-PVTGKFHALGTNEAEAIAIATEANTRLAEQR 63 R + P +Y + Y + YK K+ +G ++ I N R E Sbjct: 3 RVKSRKYPGVYLNKLANGDISYSFTYKDENGKKKWVTVGK-KSAGITEVYTYNKR-NEYI 60 Query: 64 TRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERA 123 + L A K+ + Y ++ KS + +KA+ ++ ++ Sbjct: 61 NKVKLGEDPLRAKKLRKSKVLDEAFELYVKDRELHNKSL------HDEKARYINHIQPTF 114 Query: 124 GMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 G I+A+ I +L + I G + + ++L + G G NPA Sbjct: 115 GSTPIAAITPEAIQKLQKKKINEGYSYKTVNHIINLLSTIINVGIEKGL-YQGSNPAKKV 173 Query: 183 KQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD- 240 K+ + R+R LS++E K + D + + L+L TG RL I ++ DI Sbjct: 174 KRLKVDNARERFLSVDEVKLLLDTVKD-NPTLYLFCNLSLSTGGRLETILAIQKKDIDLE 232 Query: 241 -DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGA 299 + + K S ++ L+++ L + Y++ ++ Sbjct: 233 SGTIKLKDFKNDSTYTGFINDTLHSLLKDL------LPQLKANDYIL--------SKSSK 278 Query: 300 QVKANTLTMNFSKARDLA---RI-DWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLG 352 + + + + D + + H R G Q+L+ Sbjct: 279 PLTSRQIQVPLKPILDRLFNQGLQPNDRKNRVVIHTLRHTFASHLAINGTPIYTIQRLMN 338 Query: 353 HKTQQQTDRYHDD 365 HK T RY Sbjct: 339 HKDINMTLRYAKL 351 >UniRef50_C8KG88 DNA integration/recombination/invertion protein n=3 Tax=Listeria monocytogenes RepID=C8KG88_LISMO Length = 393 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 58/381 (15%), Positives = 122/381 (32%), Gaps = 42/381 (11%) Query: 23 VNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAI 82 NK R + + + + L+ + I K + Sbjct: 15 NNKYELRVSKGYDARGKQIRKTKNVTVKTVKALKLELSNFEAYVYSSDYTEI-----KDM 69 Query: 83 TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDIAQLLD 141 ++++++ R +++ NT + + + K IS + + Sbjct: 70 RFIDFVEKWRLNYAKR----ELKGNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFH 125 Query: 142 EYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ-RLSLEEW 199 E G P + V+ +FK A +G + L+ K+P K+ + + E Sbjct: 126 EVQKKGVGPSALEGHHRVIRSLFKYATLWGITETDVS--LSVKKPTYKVPEKNIYNRREI 183 Query: 200 KKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW----------------DDHL 243 + + D +Y + LAL G R G++ + D+ + + Sbjct: 184 EVLIDRIKILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGI 243 Query: 244 HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAV------SAYLVHFFRSTSQAER 297 + + K K +P L L + +D + Sbjct: 244 KLDETKNKRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDD 303 Query: 298 GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDT---QKLLGHK 354 G ++T F++ + + + + +FH+ R + EQG++ Q +LGH Sbjct: 304 GTPFTPASVTRMFNRFLEKE--ENNDLTKISFHDLRHSAASFLLEQGINVKVIQNILGHS 361 Query: 355 TQQQTDR-YHDDRGKGWSKVA 374 + T Y G+S+ A Sbjct: 362 DIKVTLNTYAHITEDGYSEAA 382 >UniRef50_C5DAW2 Integrase family protein n=7 Tax=Bacillaceae RepID=C5DAW2_GEOSW Length = 301 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 88/301 (29%), Gaps = 34/301 (11%) Query: 82 ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAG----MKLISAVDVRDIA 137 + +D + + LNT A + ++ + + Sbjct: 1 MLFRQAIDEFVLYLQI---EKNYSLNTVDGYAYDLRCFENFLVQHGYSVQLNNITKTHVR 57 Query: 138 QLLDEY--IAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT-RQRL 194 + + +PR S L K + + + P+ + Sbjct: 58 RFIQHQITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDF--MIGIDTPKTDSKLPTYM 115 Query: 195 SLEEWKKIFDIADATHRYMG----NAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQ-EK 249 SL E +K+F + + M L TG R +I + + I + + K Sbjct: 116 SLSELRKLFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGK 175 Query: 250 TGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMN 309 + +PL + + S + + Y +H + + G ++ L Sbjct: 176 GKKERLLPLHPMVVPLMKSYMESLE--------EYQLHPSQPVFLNKNGKKLNPRGLHKI 227 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD------TQKLLGHKTQQQTDRYH 363 F A + + H R L ++ + Q+LLGH++ T Y Sbjct: 228 FKDILQKAGLPPQR---FSLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYT 284 Query: 364 D 364 Sbjct: 285 H 285 >UniRef50_B6G0S2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0S2_9CLOT Length = 376 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 63/374 (16%), Positives = 136/374 (36%), Gaps = 42/374 (11%) Query: 21 RKVNKVYWRYKH--PVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 RK Y Y + GK + + ++ + +EA +L + ++ D Sbjct: 13 RKRGNTYHYYFDGKTIDGKRNKI--EKSAKTSNKSEALKQLEKAIEEYYMSEIDFTL--- 67 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL-RERAGMKLISAVDVRDIA 137 I+ + +++ + D++ +TY + ++ + + L+ + + I Sbjct: 68 -SDISFAEAREKFLSEYVA----NDLKDSTYTNYKQKLNKPQIKVLEIYLLKDIRAKHIQ 122 Query: 138 QLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR---KITRQR 193 ++D G M + + +F + NP P + + Sbjct: 123 NIIDYMALNGFSKNMVKNTLRTISSLFNFCIRAELIKD--NPCDKVVLPSKLTQPERKVA 180 Query: 194 LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS--DIWDDHLHVIQEKT- 250 L+ +E K+I + T + +++L L TG R G+ +++ D+ ++V + T Sbjct: 181 LTNKEVKRILNRFKNT--HWYLSLMLPLYTGMRRGECCGLRWKNVDLDKGIIYVRENLTQ 238 Query: 251 --GSKIAIPL-----SLRLNAINWSLRDVVARCRDYAVSAYL-VHFFRSTSQAERGAQVK 302 G K I S+R I L + + + S + + + G+ + Sbjct: 239 DKGKKWIISTPKTKSSIRTINIPLPLLEALKWQLERNKSNNVATNSDTHVLVRDNGSIIT 298 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQK---LLGHKTQQQT 359 +TL S+ I++ G +H R L E+G + + LLGH + + T Sbjct: 299 NDTL-KYLSRV-----INYDLGIKFNYHNLRHTYATLLIEKGANIKDVSVLLGHASIKTT 352 Query: 360 D-RYHDDRGKGWSK 372 Y ++ K Sbjct: 353 MDIYVNNTDNMRDK 366 >UniRef50_Q1NIG8 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NIG8_9DELT Length = 398 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 66/368 (17%), Positives = 119/368 (32%), Gaps = 44/368 (11%) Query: 27 YWRYKHPVTGK--FHALGT-----NEAEAIAIATEANTRLAEQRTRQILAISDRIATSKG 79 Y+ + + GK +G A E + A Sbjct: 28 YYVARFQIDGKSYEEPIGWASEKWTVEAAKEKLAELRKSAKAGGPATSREARAKAAAEAA 87 Query: 80 KAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQL 139 T + L I + L+ +T + K G + + R+I L Sbjct: 88 TKTTFAQLL---AEIWERELRHKKSGKDTRRLLEKDC---LPTWGNLPVETIRRREIVLL 141 Query: 140 LDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEW 199 LDE P + V L +F A G + +P ++ K ++ L+ +E Sbjct: 142 LDEI-EQRAPIVRNRVHGALTRLFNFAAERGII--DDSPCTRIRKLAEKGRKRVLTDDEI 198 Query: 200 KKIFDIADATH-------RYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVI--QEKT 250 K +++ D R A+ L L+TGQR G+++ M + +I D ++ + K Sbjct: 199 KTLWEALDPEQVQPMDSYRLTKLALRLILLTGQRPGEVAGMTWDEIDGDTWNIPASRMKN 258 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 G +PL+ R + S ++ R + A+ L+ Sbjct: 259 GDPNDVPLTGLALETIEQARQL------SGDSPFVF------RSTHRDGAMSAHALSRAI 306 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRG 367 + T H+ R E G+D ++ LGH+ Q Y+ Sbjct: 307 ATHWQAIGFK----ERFTPHDLRRTMRTRLAELGVDDVVAERCLGHRLQGVLAVYNRHDY 362 Query: 368 KGWSKVAL 375 ++AL Sbjct: 363 AMEKRLAL 370 >UniRef50_Q5LLE0 Site-specific recombinase, phage integrase family n=2 Tax=Rhodobacteraceae RepID=Q5LLE0_SILPO Length = 400 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 64/369 (17%), Positives = 126/369 (34%), Gaps = 45/369 (12%) Query: 8 NNVSVPNLYPLYSRKVNKVYWRYKHPVTGK--FHALGTNEAEAIAIATEANTRLAEQRTR 65 + +P L S K + ++GK +G ++A A E ++ + Sbjct: 24 RDELMPGLVLRISTSGTKT-FCLHKRISGKMRRLTIGRFGVVSLAEARERVRKVLYEIET 82 Query: 66 QILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGM 125 DR T + Y K + +K+K ++ + Sbjct: 83 GRF--EDRTGVEVETKPTLGDVIPDYIE------KHAKVHNRDWKRKEALLAKF-AALHV 133 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 K I + D+ + D I P A + L + G + +P K Sbjct: 134 KRIDEIKRADVVKACD-LIHKSAPVSANRALAHLKHLMGWCVERGMI--DASPIAGMKPL 190 Query: 186 RRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLH 244 ++ +R+R L+ +E ++ DA G+ M L +++GQR +++ M+++++ + Sbjct: 191 SKERSRERVLTDDELGALWTACDAEGYPFGDCMKLLILSGQRRAEVAEMRWTELDLEKRL 250 Query: 245 VI----QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 + K G + +P++ ++ DV+ R + S Y+ + + G Sbjct: 251 WTLPSQRAKNGRQHTVPITD-------AMIDVLRRVPRFLGSDYVFTTTGKSPVSGFGR- 302 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKT-- 355 L KA P H+ R G+ T+ LL HKT Sbjct: 303 -----LKDRLDKAL------PEGTEPWIIHDLRRTMSTNMAMLGVPQPVTEALLNHKTGV 351 Query: 356 -QQQTDRYH 363 Y+ Sbjct: 352 VSGVAAIYN 360 >UniRef50_C1IAU4 Phage integrase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IAU4_9CLOT Length = 390 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 61/375 (16%), Positives = 119/375 (31%), Gaps = 48/375 (12%) Query: 30 YKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTR--QILAISDRIATSKGKAITTSTW 87 Y++ + G N + E + S R +K + IT W Sbjct: 17 YRNGLWRGSITTGRNTEGKLIRKQFYGKTKREVLDKMNDYRDKSSRGLIAKDEKITLEEW 76 Query: 88 LDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE--RAGMKLISAVDVRDIAQLLDEYIA 145 + + + K+ +++ +T ++ + G + + I + I Sbjct: 77 YNIWL----FQFKANELKASTIERYNVFYRNYIKGCNIGQVKLKDLTAPIIQNYYNSLIK 132 Query: 146 AGR-PRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ----RLSLEEWK 200 G+ P +++ L A+ + G N P+ +LEE K Sbjct: 133 NGKTPYTVKMLHKALKSSLSYAKRINYI--GINCCDNVIPPKVINKDDDKFKVFTLEEQK 190 Query: 201 KIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSL 260 K ++ +LAL TG R+G++ +K+ DI D + K+ S+ I + Sbjct: 191 KFMNVIKDHK--YRLMFILALGTGIRIGELVALKWDDINFDECTLKVNKSISRSYIEIEG 248 Query: 261 RLNAINWS------------------LRDVVARCRD----YAVSAYLVHFFRSTSQAERG 298 + + L++++ ++ + G Sbjct: 249 KRKFLLEETTPKTRSSIREVGIPSNILKELINHRKEQDEYKDNYKEIYTDNNYVFTDALG 308 Query: 299 AQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKT 355 + +TL+ + K I FH R E+G+ QKLLGH + Sbjct: 309 RYILPDTLSKAYLKVLKDNNIPHTR-----FHSLRHTYATRLFEKGVPLKTVQKLLGHSS 363 Query: 356 QQQTD-RYHDDRGKG 369 + T Y G Sbjct: 364 IKITADIYTHVIGNE 378 >UniRef50_B6QXT6 Phage integrase n=2 Tax=Pseudovibrio sp. JE062 RepID=B6QXT6_9RHOB Length = 416 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 70/395 (17%), Positives = 130/395 (32%), Gaps = 63/395 (15%) Query: 9 NVSVPNLYPLYSRKVNKVY-WRYK-HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + + K + +Y+ H + +LG A + T + Sbjct: 23 DSKLKGFGLQVMPSGAKTFIVQYRTHEGRSRRMSLGRYGELTPDQARDLATNVLATVRNG 82 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGM 125 + R +K A T + LD Y + + T K + + +R R G+ Sbjct: 83 DDPLLKR--ENKRAAPTVNVLLDIYMSKHVQVHN----KPKTMKDIERLLKRCVRSRLGL 136 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 +++V +DIA+L A PR A V +VL F A+ +G P NP K+ Sbjct: 137 MKLNSVRRQDIAKLHHSLRA--TPRQANQVLAVLSKAFNLAEVWGLRPEHSNPVRLVKRY 194 Query: 186 RRKITRQRLSLEEWKKI---FDIADAT---------------------------HRYMGN 215 + + LS EE +++ ++AD + Sbjct: 195 KENERDRFLSEEELQRLGRTLELADQEGLPWIIKAGKRSAKHLPKDVAKRKTPVNPRALC 254 Query: 216 AMLLALVTGQRLGDISRMKFSDIWDDHLHV--IQEKTGSKIAIPLSLRLNAINWSLRDVV 273 + L L TG RL +I+ +K+ I + K + P+S +++ Sbjct: 255 CLRLLLYTGARLSEIATLKWKHIDFELATFALPSRKGDERKPHPVSSSAI-------EIL 307 Query: 274 ARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR 333 + S Y++ + + + + + R A I H+ R Sbjct: 308 SEFPRVDGSPYVLP-----GCKDPTQPISIEVIENAWQRIRIHANIPD-----VRIHDLR 357 Query: 334 SLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDD 365 + G + LL H+ T+RY + Sbjct: 358 HTVGTFAAQAGSNAFLISHLLRHRNVTITNRYVNH 392 >UniRef50_C5TV13 Integrase family protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5TV13_DESVU Length = 395 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 58/380 (15%), Positives = 127/380 (33%), Gaps = 55/380 (14%) Query: 20 SRKVNKV---YWRYKHPVTGKFHALGT---NEAEAIAIATEANTRLAE------------ 61 +RK Y+ ++ GK G +E A++ R+ E Sbjct: 19 TRKHGSKPDRYFFIRYKTDGKSKEEGAGWASEGMTSQKASQLRARITENIRLGRRPQSLA 78 Query: 62 ------QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKP 115 + R+ AI +R A + A T + + ++ + Sbjct: 79 EMREMMREAREQAAIEERRAAN--AATTMNEF---WEKHYLPSSTLHKTPQTMKTESGYY 133 Query: 116 VSLLRERAGMKLISAVDVRDIAQLL-DEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPP 174 +R G +S + I Q+ + A + + +++ ++ A+++ V Sbjct: 134 AKWIRPVLGDSALSDLTPPLIEQVASNAMTAGRSAATIRHLLAIISQIWGMARNHEIV-N 192 Query: 175 GYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRM 233 G P K+PR+ R + L+ E + + + ++ LL+L G R G+I + Sbjct: 193 GECPCTRIKKPRKDNRRMRFLTEAEASTLLVELEKRSKDTHDSALLSLFCGLRAGEIHSL 252 Query: 234 KFSDIWD--DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 ++D+ +++ K ++ + ++ + R + + Y+ Sbjct: 253 TWTDLNFTSGTIYIRDPKNKHSRHAYMTDEVRSML------IERSKQLNATEYVFPAQNG 306 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGE---GSPATFHEQRSLSERLYKEQG---L 345 + ++ F + D ++ G FH R + G Sbjct: 307 AKRNW---------VSDTFERVVDQLGLNDGITDSRQRVVFHTLRHTFASWLVQDGTPLY 357 Query: 346 DTQKLLGHKTQQQTDRYHDD 365 +L+GH T + T RY Sbjct: 358 TVAELMGHTTLEMTKRYSHL 377 >UniRef50_C1IBC3 Phage integrase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBC3_9CLOT Length = 400 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 60/374 (16%), Positives = 117/374 (31%), Gaps = 52/374 (13%) Query: 38 FHALGTNEAEAIAIATEANTRLAE--QRTRQILAISDRIATSKGKAITTSTWLDRYQAIQ 95 +G N + E ++ + ++ + T W+ + Sbjct: 35 TITIGRNSEGKLIRKQFYGKTKLEVLKKVDDFKVKNTLGLSTIDEKTTVQQWIKMWLEEY 94 Query: 96 DDRLKSGDIRLNTYKQKAKPVSLLRER--AGMKLISAVDVRDIAQLLDEYIAAGRPRM-- 151 K + R +T + E G+ + + + +E I Sbjct: 95 ----KMNECRPSTIDRYFGIYRNYIENTNLGVVKLKDLKPLTLQNYYNELIKKKNKTTDT 150 Query: 152 AQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ--RLSLEEWKKIFDIADAT 209 +++ VL ++AQ + NP L P+ K+ + ++EE + + + + Sbjct: 151 IKIINKVLSGGMRQAQKEQLILN--NPCLFVTLPKSKVKEEVMTFTMEEQRIFLNAIEDS 208 Query: 210 HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSK---------------- 253 LAL +G RLG++ +K+SDI V K+ + Sbjct: 209 RD--RCIFNLALGSGLRLGELLALKWSDIDFSSNEVKVSKSVKRVKCFDENTNTKTKIIE 266 Query: 254 ---------IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKAN 304 IPL ++++ + + A Y+ + + G + A Sbjct: 267 QLPKTRYSERKIPLPKATINELKRHKNIILQEKLMAGDIYIDNNLVFPNV--LGGYIDAR 324 Query: 305 TLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTD- 360 LT + + A I + + FH R E G+ Q LLGH + T Sbjct: 325 NLTKRYKSILNKANIPYRK-----FHALRHTYATRLFENGVSLKVIQVLLGHSSMDITAN 379 Query: 361 RYHDDRGKGWSKVA 374 Y K + Sbjct: 380 IYTHVLPKEKIRAV 393 >UniRef50_A6NRR1 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRR1_9BACE Length = 377 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 57/366 (15%), Positives = 110/366 (30%), Gaps = 45/366 (12%) Query: 24 NKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAIT 83 K Y+ Y + + T A A + R+ + + +A+T Sbjct: 16 RKAYYVYMD------YGRDEDGRRVKKYRTCATLAAARRVLREFQSELESRQQVAPRALT 69 Query: 84 TSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLISAVDVRDIAQLLDE 142 WL+ + + + T K + + L + G + + R + + Sbjct: 70 LDQWLEYWMEQVVE----PNRAETTIYGYRKIIDNHLSDALGDIPVQKLTPRHLQEYYAM 125 Query: 143 YIAA--GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ-RLSLEEW 199 + P + +L A + +P + PR EE Sbjct: 126 LMRDKGLSPNTVRRHHDLLSAALHTAVRQDII--LRSPTERVEPPRVVPREVGYYGPEEL 183 Query: 200 KKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV-------------- 245 KK++ +A+ T + + LA + G R +I +++S + + Sbjct: 184 KKLYALAEGTG--LELVVKLAGMLGLRREEICGLQWSSVDFAQRRIHICAARTAAGGEII 241 Query: 246 -IQEKTGSKIAI-PLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKA 303 + K S + +S L + R A R + + G + Sbjct: 242 QKETKNRSSTRVLHMSDELVRLLRRERAGQAENRLALGDKWEDSGLVAV--DHMGHPLSP 299 Query: 304 NTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQT- 359 N +++ F++ + T H R + QG D K LGH T T Sbjct: 300 NAVSLAFTRFIRRNNLP-----KITLHGLRHTFATVASAQGAPLFDIGKALGHSTPATTG 354 Query: 360 DRYHDD 365 Y Sbjct: 355 RIYTHL 360 >UniRef50_C2NSI2 DNA integration/recombination/invertion protein n=2 Tax=Bacillus cereus group RepID=C2NSI2_BACCE Length = 382 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 64/389 (16%), Positives = 139/389 (35%), Gaps = 50/389 (12%) Query: 14 NLYPLYSRKVNKVYWRY---KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAI 70 N +R K + + K +TGK + A +A L + Sbjct: 7 NGTVRKNRHTGKWDFVFNIAKDSITGKRRQIRRRGFRTKREAHDAMLILKAKMLSG---- 62 Query: 71 SDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV-SLLRERAGMKLIS 129 S +T + ++D + ++ ++ TY+ + ++++ R G + Sbjct: 63 ----ERSDLSKLTYAAYVDEWMKE-----RTFHLQETTYEIHKTYIANVIKPRLGHFQMR 113 Query: 130 AVDVRDIAQLLDEYIAA--GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR 187 ++ + + ++E P ++ ++ K+A+ + NP + P+ Sbjct: 114 EIEPIHMQKFVNELAIDIGYSPATVHLIYRIVSASLKKAKVLKLI--DENPTIGITLPKL 171 Query: 188 KITRQR--LSLEEWKKIFDIADATHR--YMGNAMLLALVTGQRLGDISRMKFSDIWDDH- 242 + T + +LEE + +R M ++AL+TG R G+I +++ DI ++ Sbjct: 172 RKTSEINVWTLEEVNHFINEGKNVYRSTRMYICCVIALLTGMRQGEIMGLRWKDIDFENR 231 Query: 243 -LHVIQE-------KTGSK-----IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFF 289 +++ Q K G+K + ++L R+ V + R Y Y + Sbjct: 232 IIYIRQTLTQSGKIKVGAKNNASIRNVHFPIKLIGELELHRETVKKERLYHGKDYEDNNL 291 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ- 348 A +G + + F + + FH+ R + +Q ++ + Sbjct: 292 VI--CARKGNPLIPKNGRIEFYNLTEKLGLP-----KIRFHDLRHTHATMLIQQNVNVKL 344 Query: 349 --KLLGHKTQQQTDR-YHDDRGKGWSKVA 374 + LGH Q T Y +VA Sbjct: 345 ISERLGHTDIQTTLNTYSHVLPNMQREVA 373 >UniRef50_C9RA80 Integrase family protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RA80_AMMDK Length = 383 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 71/384 (18%), Positives = 128/384 (33%), Gaps = 61/384 (15%) Query: 17 PLYSRKVNKVYW-----RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAIS 71 VY+ + PVTGK AE Q +A Sbjct: 5 IRKRVGKRGVYYDVVFDIGRDPVTGKRKQKWLRGFRTKKE--------AEAALAQAIAEV 56 Query: 72 DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISA 130 +R + +T + +L + A + + L T+++ + + L G + Sbjct: 57 ERGTYIDPEKVTLAEYLKEWHA-----ARKHKLSLRTWERYGQLIEHWLIPHLGGIPLRK 111 Query: 131 VDVRDIAQLLDEYIAAG--------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 + + + + + A P + VL ++A +P YNP A Sbjct: 112 LSPVHLEKFISAMLEADRLDGKGKISPTTVRHAALVLNKALRDAVKKRLIP--YNPMEAV 169 Query: 183 KQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWD- 240 +PR+ L E +++ A+ T Y+ + LA+ TG RLG+I +++ D+ Sbjct: 170 DKPRKARKEPPALKEGELRRLMSAAEGT--YLYAPITLAVYTGARLGEILGLRWRDVDFE 227 Query: 241 ---------------DHLHVIQEKT-GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAY 284 L+ + KT S+ I + A + + A + A SA+ Sbjct: 228 AGCIFILQALKRNLKGELYFDEPKTPRSRRRIEIGPACLAALRKQKKLQAEWKLKAGSAW 287 Query: 285 LVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG 344 E G+ + + + F K ID FH R + + G Sbjct: 288 QETGL--VCTREDGSPIDPHAFSSAFRKLASKLGIDAN------FHALRHTHATMLLKAG 339 Query: 345 LD---TQKLLGHKTQQQT-DRYHD 364 + + LGH + T D Y Sbjct: 340 VHLKIVSERLGHASVAITGDLYSH 363 >UniRef50_Q1MA85 Putative shufflon-specific DNA recombinase n=3 Tax=Alphaproteobacteria RepID=Q1MA85_RHIL3 Length = 317 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 116/332 (34%), Gaps = 40/332 (12%) Query: 47 EAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRL 106 ++ A A + L Q R A +I + T L RY+ + + Sbjct: 9 DSKAEAEKWARELESQVDRFGAAPDTKIL----ETTTLGDLLKRYKIEVSPTKRGCVQEI 64 Query: 107 NTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEA 166 + + + + D+A DE +++ P A ++L V + A Sbjct: 65 QRIDVLERH------EIAHRTLVGLSQPDVASFRDERLSSVAPSTAVREMAILSHVIEVA 118 Query: 167 QHYGEVPPGYNPALATKQPRRKI-TRQRLSLEEWKKIFDIADATH-RYMGNAMLLALVTG 224 P N ++P + ++RL +E +++ D D +M +++A+ TG Sbjct: 119 MRDWGFPLSRNVVKLVRRPVIRNERKRRLEGDEEQRLLDGCDGGKIPFMRTLLIVAIETG 178 Query: 225 QRLGDISRMKFSDIWDDH--LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVS 282 R +I +K++DI + + + K GS +P++ R D ++R ++ A Sbjct: 179 MRRSEILGLKWTDISHNRRVITLEMTKNGSGREVPMTQRAF-------DALSRWKENAPV 231 Query: 283 AYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKE 342 + F + + + + A I FH+ R E Sbjct: 232 EESMVF-----------PIAPGSFEQVWRRLLKRANI-----VGLRFHDLRHEGVSRLFE 275 Query: 343 QG---LDTQKLLGHKTQQQTDRYHDDRGKGWS 371 +G ++ + GHK + RY Sbjct: 276 RGLNVIEVSSISGHKELRMLKRYTHLSADDLV 307 >UniRef50_Q0H247 DNA integration/recombination protein n=6 Tax=root RepID=Q0H247_9CAUD Length = 394 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 62/396 (15%), Positives = 109/396 (27%), Gaps = 60/396 (15%) Query: 15 LYPLYSRKVNKVYW---RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAIS 71 ++ K + P TGK + A A +L ++ Sbjct: 4 FQKYKTKDGEKWMFKMDVGIDPATGKRKTTTRRGFKTKKEAQLAAAKLYDEINNGGYV-- 61 Query: 72 DRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAV 131 K I + + AI + K +T + + + L G + V Sbjct: 62 ------KDTNILFKDFAQEWLAIYSETAKI-----STIRARKHELGHLMRYFGNLKLKDV 110 Query: 132 DVRDIAQLLDEYIAAGRP-RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKIT 190 + +L + G + + +FK+A + NP K P++K T Sbjct: 111 TRKMYQDMLLDLKKKGYADNTLDGIHTTGRMIFKKAMELELI--NSNPTEYAKVPKQKKT 168 Query: 191 RQ----------RLSLEEWKKIFDIADATHRYM-GNAMLLALVTGQRLGDISRMKFSDIW 239 + L E A M TG RLG++ +++ DI Sbjct: 169 VEDIESGNKDMKFLEKHELALFLKTAQEHGLAMDYVVFSTLAYTGMRLGELLALQWKDIN 228 Query: 240 DDHLHVIQEKT-------------------GSKIAIPLSLRLNAINWSLRDVVARCRDYA 280 + KT GS I + + ++ + + Sbjct: 229 FKEHTIAITKTLYSPRNNERYYQLLPPKTQGSIRTIKVDPNIISLLKKHKAEQNEIKLRM 288 Query: 281 VSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLY 340 L H G + + + +A I T H R L Sbjct: 289 G--ELYHDLGFVFARPSGFPEVPKKIEIRMKRLLRIANIH----KHVTPHSLRHTHTSLL 342 Query: 341 KEQGL---DTQKLLGHKTQQQTD-RYHDDRGKGWSK 372 E G+ + Q+ LGH + T Y K + Sbjct: 343 IEAGVGIKEIQQRLGHADIETTMNIYAHLT-KDLEE 377 >UniRef50_Q04676 Rci protein n=10 Tax=Enterobacteriaceae RepID=Q04676_ECOLX Length = 374 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 106/314 (33%), Gaps = 52/314 (16%) Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER-AGMKLISAVDV 133 K + +T S LD+Y I + Q+ V++++ + + + Sbjct: 3 QKIKIRKMTISRALDKYLKTV-------SIHKKGHLQEFYRVNVIKRHPIAERYMDDITT 55 Query: 134 RDIAQLLDEYIAAGRPRM--------AQVVRSVLIDVFKEA-QHYGEVPPGYNPALATKQ 184 DIA D+ +A PR ++ ++L +F A +G NP ++ Sbjct: 56 VDIANYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRM--NPVELVRK 113 Query: 185 PRRK-ITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DD 241 P+ +RL+ E +++ ++ + LAL T R G+I +++ + Sbjct: 114 PKISSGRDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHG 173 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 H+ K G+ +PLS + L + Sbjct: 174 VAHLPTTKNGAPRDVPLSRKARNYLQMLPTQL---------------------NGNIFSY 212 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG----LDTQKLLGHKTQQ 357 ++ + A +I+ FH+ R + + E G ++ + GH++ Sbjct: 213 TSSGFKSAWRTALQELKIEN-----LHFHDLRHEAISRFFELGTLNVIEVAAISGHRSLN 267 Query: 358 QTDRYHDDRGKGWS 371 RY R Sbjct: 268 MLKRYTHLRAYQLV 281 >UniRef50_Q24ZE5 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24ZE5_DESHY Length = 308 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 92/283 (32%), Gaps = 43/283 (15%) Query: 119 LRERAGMKLISAVDVRDIAQLL-----DEYIAAGRP-----RMAQVVRSVLIDVFKEAQH 168 + + G +S + + + D G+P R + +VL + ++A Sbjct: 6 ILPQLGNLKLSDLRPGHLMKFYKYLEQDGIRQDGKPGKLSDRSIRYYHAVLSSMLEDAMK 65 Query: 169 YGEVPPGYNPALATKQPRRKITRQRLSLEEWKK--IFDIADATHRYMGNAMLLALVTGQR 226 + + NPA + P+ + + S +E + + + LAL TG R Sbjct: 66 WQLIT--SNPAARVEAPKVRRKQTT-SYDETQSAELLQALYSEPIKYRVLTTLALYTGLR 122 Query: 227 LGDISRMKFSDIWDDHLHV----------------IQEKT-GSKIAIPLSLRLNAINWSL 269 G++ +++ I ++ + + KT GS+ I + + + Sbjct: 123 RGELLGLEWKVIDMENAQIAVVKQSQYTPETGVVDRKTKTEGSQRLISIPTSIVTLLKEY 182 Query: 270 RDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEG----- 324 + R S L G + +T++ F+ + Sbjct: 183 KAAQNEERLKVGS--LWQPSDKLFTTWNGKPMHPDTVSSWFNDFLTRYNEKTIQQGKASL 240 Query: 325 SPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQTD-RYH 363 FH+ R S L QG+ + LGH + T Y Sbjct: 241 PHIRFHDLRHTSASLLIAQGVPLKNVSSRLGHSSIAITADIYA 283 >UniRef50_Q72B79 Site-specific recombinase, phage integrase family n=2 Tax=Desulfovibrio vulgaris RepID=Q72B79_DESVH Length = 373 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 57/382 (14%), Positives = 125/382 (32%), Gaps = 50/382 (13%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVY------WRYKHPVTGKFHALGTNEAEAIAIATE 54 MA ++++ P +Y Y+H + +G ++E + A Sbjct: 1 MA--SQRSSTKYPGVYERLVIHRVSGKQDIAFDIAYRHGGKKVWETIGR-KSEGVNAAYA 57 Query: 55 ANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAK 114 A R + + R + L+RY + G + + + Sbjct: 58 ARVRAERVKEVEAGRFIAR-----DEMPVFRDALERYLTVHAK----GKSSESHMRGYFE 108 Query: 115 PVSLLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVP 173 + G + + I +L G P+ + +++ V+++ +G + Sbjct: 109 H--HIAPLFGDAKMDRIKPIHIEELKRSMAEKGRSPQTIRHAIALVRQVYRKCVAWG-IY 165 Query: 174 PGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISR 232 G +P + P+ R + L+ E + R + L+L TG RLG++ Sbjct: 166 TGTSPTDGVEMPKVDAARLRFLTEAEAASLLHALHRRSRQWHDIAYLSLYTGMRLGEVLG 225 Query: 233 MKFSDIW--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVV-ARCRDYAVSAYLVHFF 289 ++ + D + V+ K G++ + +++++ ARC ++ Sbjct: 226 LQVGHVNVADGVIDVMDAKAGTR--------AAYMTAGVKEILAARCAGRDAKEFVFVQR 277 Query: 290 RSTSQAERGAQVKANTLTMNFSKARDLA---RIDWGEGSPATFHEQRSLSERLYKEQGLD 346 ++ FS+ D + FH R ++G+ Sbjct: 278 GGGRV---------RYISSVFSRVADELFNDGVTDAR-HKVVFHTLRHTFGSWLAQRGVP 327 Query: 347 ---TQKLLGHKTQQQTDRYHDD 365 L+GH + + T RY Sbjct: 328 LYTIAVLMGHSSLEMTKRYSKL 349 >UniRef50_C7Y5Z8 Lj928 prophage integrase n=2 Tax=Lactobacillus crispatus RepID=C7Y5Z8_9LACO Length = 399 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 69/394 (17%), Positives = 123/394 (31%), Gaps = 58/394 (14%) Query: 22 KVNKVYWRYK-----HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 K K Y+R + +P TGK + ++ ++ A E L Q A+S +I T Sbjct: 15 KNGKKYFRLRTYIGINPETGKVINVTRSKLKSRKEAEELRRNLKAQ---GPSALSQKIET 71 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIR--LNTYKQKAKPVSLLRERAGMKLISAVDVR 134 ++ K IT S + + + ++ + +T+K G I + Sbjct: 72 AQ-KKITVSYVYNVWLEVMKQDVRGSTLGRLKDTWKNHT------EPEFGDTYIDRISPD 124 Query: 135 DIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR------K 188 + + +++ + + + + + L + K A P P++ Sbjct: 125 HVQKYVNDLAS--KYVTYKSIVNQLHRIIKYAIFRHWCSKD--PFDFVIMPKKSAKSSRD 180 Query: 189 ITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHL----- 243 +R L+E K DIA R L G R G+ +K+SD+ D Sbjct: 181 NSRNFYELDELKHFLDIARDYSRMKYTYFLTVASLGCRRGEALALKWSDVDFDKRVVKIE 240 Query: 244 -----------HVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRST 292 + K G A+P+S L L++ C + + + Sbjct: 241 RTVAKDDNGKKTIDDVKNGVHHAVPMSDNL---YMILKEYREYCDEIGDHCEWIFHTKDG 297 Query: 293 SQAERGAQ-VKANTLTMNFSKARDLARIDWGEGS-----PATFHEQRSLSERLYKEQG-- 344 S L K + + T H R L + Sbjct: 298 SYNWAQQPDFWLKYLYKFDKKQCEKWNKEHPNDKKEPLRKITPHGLRHTLATLLYDGNER 357 Query: 345 ---LDTQKLLGHKTQQQTD-RYHDDRGKGWSKVA 374 D Q +LGHKT + Y K + Sbjct: 358 ITPKDVQYVLGHKTSKTAMEIYTHVTKKQKKDIK 391 >UniRef50_C0EC03 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EC03_9CLOT Length = 440 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 55/399 (13%), Positives = 119/399 (29%), Gaps = 54/399 (13%) Query: 19 YSRKVNKVYWRYKHP-----VTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDR 73 + K +YW K+ A + ++ T ++L + Sbjct: 29 VAEKKGYLYWVLNLTDENGKRKPKWIPTHKKVKGNKTWANNMLPTIRKEWTEKLLQEATA 88 Query: 74 IATSKGKA------ITTSTWLDRYQAIQDDRLK-----SGDIRLNTYKQKAKPVS-LLRE 121 S + I+ +L ++ + S I L+TY + ++ + Sbjct: 89 SQQSASPSGPSSAAISFVDFLYQWLEYKYKSATGRVMDSKPIELSTYSGYEQQLNNPIAP 148 Query: 122 RAGMKLIS--AVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 ++ + +DI ++ + +P + +++ A +P NPA Sbjct: 149 YFREHPVALCDLTKQDILAFYEKELERVKPTTVKHYHALIHGALNYAVDKNLIP--SNPA 206 Query: 180 LATKQPRRKI-TRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFS-- 236 + + E +F++ + +LL G R ++ +K+S Sbjct: 207 DRIIISKPEPFKGDYYLDSEVLNLFEVIK--GHKIELVVLLTAFYGLRRSEVIGLKWSAF 264 Query: 237 ----------------DIWDDHLHVIQEKTGSK---IAIPLSLRLNAINWSLRDVVARCR 277 ++ + + + ++K +K PL L + R Sbjct: 265 DFNHNCFSIRHTVTTCNVKGERVTIKKDKAKNKSSLRTYPLIPFLKERLLEAKKQQEENR 324 Query: 278 DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSE 337 AY + G +K N ++ F K + FH+ R Sbjct: 325 KLCGRAYNKEYLGYVCVDVIGNLIKPNYVSSTFGKLLAKNNLRHIR-----FHDLRHTCA 379 Query: 338 RLYKEQGLD---TQKLLGHKTQQQT-DRYHDDRGKGWSK 372 L G+ ++ LGH T D Y + + Sbjct: 380 SLLLANGVPMEQVKEWLGHSEISTTVDIYGHLQYATKKQ 418 >UniRef50_C4KAG8 Integrase family protein n=1 Tax=Thauera sp. MZ1T RepID=C4KAG8_THASP Length = 330 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 61/361 (16%), Positives = 120/361 (33%), Gaps = 51/361 (14%) Query: 22 KVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKA 81 + W+ + G E + AT+A+ + + + + Sbjct: 5 RQRGNRWQCRVTRHG-------FPPETKSFATKADAETWARSIEVEMDKGVHQNRASVER 57 Query: 82 ITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE-RAGMKLISAVDVRDIAQLL 140 T + L RY K K +A ++ LR + ++ + +A+ Sbjct: 58 TTLADILLRYAEEVTPCKKGA-------KDEAIRLNALRANKLAKHSLANLSAAAVAKFR 110 Query: 141 DEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQR-LSLEEW 199 DE + +++ V A+ P N A ++PR+ R+R LS +E Sbjct: 111 DERLKTVSAGTVLRDLALISSVLNHARREWGFPV-ENAVQAIRKPRQPQGRERVLSHDEE 169 Query: 200 KKIFDI---ADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLH--VIQEKTGSKI 254 ++ ++ ++LAL T R G++ +++ + D + K G++ Sbjct: 170 ARLLAASAPIGRRSPWLQPIIILALETAMRRGELLALRWEHVSLDKRTALLPDTKNGTRR 229 Query: 255 AIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKAR 314 +PLS R + + R + L + F A Sbjct: 230 LVPLSPRAIDTLKHMPRAIDG---------------------RVFPISEPALHLRFKLAC 268 Query: 315 DLARIDWGEGSPATFHEQRSLSERLYKE---QGLDTQKLLGHKTQQQTDRYHDDRGKGWS 371 D A ID FH+ R + E + + GHK+ Q RY+ + + Sbjct: 269 DRAGID-----GLHFHDLRHTATTRLAEKLTNLAELSAVTGHKSLQMLKRYYHPNAEALA 323 Query: 372 K 372 + Sbjct: 324 E 324 >UniRef50_A7ICY0 Integrase family protein n=14 Tax=Alphaproteobacteria RepID=A7ICY0_XANP2 Length = 452 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 58/400 (14%), Positives = 117/400 (29%), Gaps = 59/400 (14%) Query: 9 NVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQI 67 + +P + Y +Y+ + +G + A + + + Sbjct: 23 DDELPGFGLRVFTSGKRSYVLQYRSAGRSRRFTIGLHGVWTPERARQEAKAQLGRIAQGD 82 Query: 68 LAISDRIATSKGKAITTSTWLDRYQAIQDDRL----KSGDIRLNTYKQKAKPV-SLLRER 122 +R+ KA+T D Y A L + T + + Sbjct: 83 DPAEERLL--DRKALTVKELCDLYLADLQAGLILGKGGRPKKPGTIASDLGRIHRHIVPL 140 Query: 123 AGMKLISAVDVRDIAQLLDEYIA------------------AGRPRMAQVVRSVLIDVFK 164 G + + + DI + + + +A G A +L + Sbjct: 141 LGSRRVRDLTKADITRAMKDIMAGKTRISVMTKNLRGRSIVRGGAGTATRTIGLLGGILT 200 Query: 165 EAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATH-----RYMGNAMLL 219 A G + NPA ++P+ + +RLS E++ + D+ R + Sbjct: 201 YAVEAGIIET--NPAHGVRRPKDNVRARRLSEAEYRVLGDLLKTASKNENYRMSVEIIRQ 258 Query: 220 ALVTGQRLGDISRMKFSDIWDD--HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCR 277 +TG R ++ +++ + D L + K GS I I + + + R R Sbjct: 259 IALTGCRRMEMVTLRWDEADTDCSCLRLKDSKEGSSIR--------PIGLPVVEYLERRR 310 Query: 278 DYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSE 337 + A+ Y+ + N F+ + + H R Sbjct: 311 NEAIGDYVFPGRGGENAFGS----FPNHWGKIFA---------NSPLADISPHVLRHSFA 357 Query: 338 RLYKEQG---LDTQKLLGHKTQQQTDRYHDDRGKGWSKVA 374 + + G + L+GH T Y A Sbjct: 358 SVANDLGFTEVTIAALVGHAKGSVTSNYIHTLDTALIMAA 397 >UniRef50_Q252J3 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q252J3_DESHY Length = 395 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 100/323 (30%), Gaps = 44/323 (13%) Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAG--MKLIS 129 + + + +L ++ I T+K + + + Sbjct: 56 EGKRNPQADVLFTDYLQKWLTQAKP-----TIAKTTFKGYQTMLDGRISRYFTELNITLG 110 Query: 130 AVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRK 188 V + I G P +VL + A + NPA +P++ Sbjct: 111 EVTPQHIQDFHQSIFDEGHTPNTVIHYHAVLRRALQNAVKKEII--DSNPADRVDRPKKN 168 Query: 189 I-TRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQ 247 + Q S EE +FD + + LA G R ++ +K+ I + + Sbjct: 169 VYHAQFYSAEEMMALFDEISDDP--LEICVKLAAYYGLRRSEVLGLKWDAINLEQKTISI 226 Query: 248 E--------------------KTGSK-IAIPLSLRLNAINWSLRDVVARCRDYAVSAYLV 286 + KT S +PL + + + ++ R +Y Sbjct: 227 KHKVIEDTVDGKSIAVGEDVLKTKSSFRTLPLLPSVEKLLLAEKEKQEMYRKLFKRSYCR 286 Query: 287 HFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD 346 + + G ++ N +T +FS A + A + FH+ R L G+ Sbjct: 287 DYLDYICLDQAGKLMRPNYVTEHFSWALEKADLK-----KIRFHDLRHSCASLLLANGIS 341 Query: 347 TQKL---LGHKTQQQTD-RYHDD 365 +++ LGH T T Y Sbjct: 342 MKQIQIWLGHSTFSTTADIYSHL 364 >UniRef50_A8ZS80 Integrase family protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS80_DESOH Length = 403 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 58/358 (16%), Positives = 113/358 (31%), Gaps = 37/358 (10%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 ++ N Y+R KH GK N + N L L D Sbjct: 13 YLQKRDNTFYFRKKH--NGKVFKRSLNTTDKRTARDLRNFYLRNLVEYGQL---DAPEKV 67 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDI 136 IT + +I ++R +T+ ++ + I+ + D+ Sbjct: 68 DYDVITFGEVAKEWASIHKK-----EVRYSTWPDYVSSMNGHILPNFKDMPIAEITYGDV 122 Query: 137 AQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRLS 195 + + A + + VF A G + N K+ + S Sbjct: 123 LKFRSGL--KVGAKRANNILVPMKSVFDYADREGIIQD--NVMRKIKRLSEEAPEIHPFS 178 Query: 196 LEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD-----HLHVIQEKT 250 +E ++ D H + +++A TG R G+ + + +SD +D + + + Sbjct: 179 YDEVNRLLDAV---HPWYQPYLIVAFFTGMRAGEQNGLCWSDFLEDMQPEPRIFIRKTYV 235 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTM-N 309 K IP + + L V+ + L + G ++ + + Sbjct: 236 YKKDGIPKTKKSKRYIKCLPQVLEALSEQRK---LTGKNKHIFLTIDGRRMTPDHIRKEV 292 Query: 310 FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQT-DRYH 363 + A + A I++ R + G D Q +LGH + Q RY+ Sbjct: 293 WIPALEKAGIEYRPPIQT-----RHTFATMMLSAGEDIGWVQNMLGHSSLQMIFQRYY 345 >UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KUI7_METC4 Length = 414 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 66/393 (16%), Positives = 126/393 (32%), Gaps = 39/393 (9%) Query: 2 AARPRKNNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEA----EAIAIATEAN 56 R + ++P LY + K + RY+ + LG +A A A Sbjct: 17 GKRREVPDAALPGLYLVVQPAGGKSWAVRYRAAGKPRKLTLGPYPRLGLADAREAARTAL 76 Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPV 116 +AE R + R+ + + + Y + R ++++ + Sbjct: 77 HAVAEGRDPAGEKQAARVEVAAVQTMRFGAVAADYIE------RYAKPRNRSWRETESFL 130 Query: 117 SLLRER---AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVP 173 + + K + A+ +D+ LD +A G A + + L F G + Sbjct: 131 TRTLDATDKWQEKDVRAIGRKDVRDALDAVVARGASIHANRLFAALRRFFAWTVERGIL- 189 Query: 174 PGYNPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISR 232 +P K P +I+R R L+ E ++ A G + L ++TGQR ++ Sbjct: 190 -DASPMAGLKPPSPEISRDRVLTDAELVAVWKAAGEVGYPFGPVVQLLILTGQRRSEVVE 248 Query: 233 MKFS--DIWDDHLHVI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHF 288 ++ D+ + + K +PL+ + I + V R R + F Sbjct: 249 AEWREFDLDGATWTIPRERAKNDRAHVVPLAPQAVKILRCIPCVGTRSRLLFTTTGETAF 308 Query: 289 FRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD-- 346 + +R + A L + E P H+ R G+ Sbjct: 309 SGVSKATDRLQGLSAKHL------------PEGIEVEPWRLHDLRRTFASGCARLGVAVH 356 Query: 347 -TQKLLGH---KTQQQTDRYHDDRGKGWSKVAL 375 +K L H Y + A+ Sbjct: 357 VVEKALNHVSGTHSGIVGVYQRHSYGDERRCAM 389 >UniRef50_C8R239 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R239_9DELT Length = 332 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 62/354 (17%), Positives = 122/354 (34%), Gaps = 45/354 (12%) Query: 29 RYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWL 88 +Y+ + H A+ + ++ + I + + T L Sbjct: 9 QYQIRAKVRKHG---YRTITKTFNNVADAKAWARQVEAAMDRGAYIPVAAAEKNTLRMVL 65 Query: 89 DRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGR 148 +RY+ RL + + ++ L E G ++A+ ++A+ D+ + AG Sbjct: 66 ERYRKEICPRLARAG------RDEFARLNRLTEALGDLSLAALQPAEVARYRDQRLKAGA 119 Query: 149 -PRMAQVVRSVLIDVFKEAQ-HYGEVPPGYNPALATKQPRRK-ITRQRLSLEEWKKIFDI 205 P+ + +L V K +G P ++P +RL E +K+ Sbjct: 120 APQTVKHDLGLLNRVLKACVMDWGIPLPHGIVTAQVRKPSPPSGRDRRLESREEEKLLAA 179 Query: 206 ADA-THRYMGNAMLLALVTGQRLGDISRMKFSDIW-DDHLHVIQ---EKTGSKIAIPLSL 260 A A R + + +AL T R +I+ M++ I D + I KT + +PLS Sbjct: 180 AQASKSREIEKIITIALETAARRAEIASMRWEHINLDKRIWFIPAAATKTKTARTVPLST 239 Query: 261 RLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARID 320 A+ L + + + + +T F + A I+ Sbjct: 240 GAMAVLQGLPRRID--------------------GQVWSFSHPDGITQAFDRICKRAEIE 279 Query: 321 WGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYHDDRGKGWS 371 FH+ R + E+G ++ + GHK + RY + + Sbjct: 280 DLR-----FHDLRHEATSRLFEKGLNMMEVAAITGHKDLKMLKRYTHLKAEDLV 328 >UniRef50_B7KWK2 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KWK2_METC4 Length = 354 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 61/344 (17%), Positives = 108/344 (31%), Gaps = 39/344 (11%) Query: 38 FHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDD 97 + N A A+ ++LA A ++RY Sbjct: 12 WVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHRFEEAVERYFQE--- 68 Query: 98 RLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVR 156 +R T L + + R IA+ + G + Sbjct: 69 ----TRVRPKTLSSYRSNSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTTIRRDL 124 Query: 157 SVLIDVFKEAQHYGEVPPGYNPAL--ATKQPRRKITRQR-LSLEEWKKIFDIADATHRYM 213 + L + +G + NP + R R R L+ E+ ++ A + Sbjct: 125 AFLSVICSACGRWGWL--DTNPVTTFGKRGLREGRPRTRFLTQAEFDRLLAAA---SPSL 179 Query: 214 GNAMLLALVTGQRLGDISRMKFSDIWDDHL--HVIQEKTGSKIAIPLSLRLNAINWSLRD 271 A+ LA+ TG R ++ + + I + H+ + KTGS +PLS + L D Sbjct: 180 RPAITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGLLD 239 Query: 272 VVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHE 331 S+YL + + + F A A++ +H+ Sbjct: 240 ----EPGRPRSSYLFCKGDGSRYCD---------MKKGFGGACRRAKVTNMR-----WHD 281 Query: 332 QRSLSERLYKEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWSK 372 R Y ++G D ++LGH Q T RY R + + Sbjct: 282 LRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRVEDLHE 325 >UniRef50_B7DTQ3 Integrase family protein n=2 Tax=Bacillales RepID=B7DTQ3_9BACL Length = 392 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 56/367 (15%), Positives = 108/367 (29%), Gaps = 50/367 (13%) Query: 19 YSRKVNKVYWRYK--HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIAT 76 ++ N + GK + A L EQ Sbjct: 15 IRKRGNSWSVVVYLGYDEQGKKRYKWHGGFKTKRDAERFLATLVEQVHDG--------TY 66 Query: 77 SKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSL-LRERAGMKLISAVDVRD 135 + T +L + K +R T + V + R G ++ + Sbjct: 67 VEPSKKTVGAYLREWLDD-----KRTKVRPGTLRSYVWLVEHHIIPRIGQLELAKLRPSH 121 Query: 136 IAQLLDEYIAAG---RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQ 192 I +L + R +L A +G + N A + PR Sbjct: 122 IQKLYTDLQTGDEHISKRSVLHAHRILHQALDRAVKWGLIT--RNVTDAVEPPRPARQEM 179 Query: 193 R-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW------------ 239 R + E+ A + Y+ A +L TG R+G++ +++ D+ Sbjct: 180 RVWTDEQLDAFLQAARKSRYYV--AFVLLSSTGMRVGEVLALRWEDVDLQAGLVRVVRSY 237 Query: 240 ---DDHLHVIQEKTGS-KIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQA 295 + + KT S + +I L + + + A R SA+ + Sbjct: 238 SYTGKGYRIEEPKTESGRRSIALPPAVVDLLRKHKTEQAARRLMVGSAWEDNDLVI--CT 295 Query: 296 ERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLG 352 G + + L +F + + + H+ R + ++G+ Q+ LG Sbjct: 296 AFGKPILQHNLRTSFHRIIERTGLPRIR-----LHDLRHTHATILLQRGVHPKVVQERLG 350 Query: 353 HKTQQQT 359 H T Sbjct: 351 HSDITLT 357 >UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanella RepID=A4Y9I4_SHEPC Length = 432 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 133/397 (33%), Gaps = 56/397 (14%) Query: 14 NLYPLYSRKVNKVYWRYKHPVTGKFHAL----GTNEAEAIAIATEANTRLAEQRTRQILA 69 LY + YW ++ V GK ++ G A ++ A ++ + I Sbjct: 33 GLYIRVQTE-GVAYWEVRYSVNGKRRSMVPNGGVYPAMSLVEAKAEAAKVKLLAKQGIDP 91 Query: 70 ISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLIS 129 +++R + T + D + RLK +I + Y ++ G ++ Sbjct: 92 LAERERQQEITIKTVNDLFDDWYQCTAPRLKHPEIPMRMYT------KDIKPAIGQLKVT 145 Query: 130 AVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR--- 186 V+ RDI +L + + + RP +A +F A NPA A Sbjct: 146 DVNARDIRAILHKVVKSNRPTVANKTLLFCKQLFNHACKLDV--ASGNPAAAFNTADAGG 203 Query: 187 -RKITRQRLSLEEWKKIFDIADATHRYM----GNAMLLALVTGQRLGDISRMKFSDIWDD 241 K + LSL E F + + A+ L L G R G++ K+S+ D Sbjct: 204 LEKNRTRVLSLNEIAAAFPVLRNSRPIFSHENYLAVALLLCLGVRKGELIAAKWSEFDFD 263 Query: 242 ----HLHVIQEKTGSKIAIPLSLRLNAINWSLR------------DVVARCRDYAVSAYL 285 + + KTG I IPLS + L+ ++ R+Y + L Sbjct: 264 QQVWRMPKERSKTGVGITIPLSEFVIEWLKELKIIACGSEYVFPARKASKRREYIANDTL 323 Query: 286 VHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGL 345 H + + + F A ++ T H+ R L + Sbjct: 324 NHALAKLFGQKHDSNKQP------FENLLGKAGVEH-----FTVHDLRRTCRTLLASLKV 372 Query: 346 D---TQKLLGHKTQQQTDRYHDD-----RGKGWSKVA 374 ++ L HK + Y+ R + K+A Sbjct: 373 PPHIAERCLNHKLKGIEGTYNHHDYLEERREALDKLA 409 >UniRef50_C6QSP6 Integrase family protein n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QSP6_9BACI Length = 399 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 117/383 (30%), Gaps = 47/383 (12%) Query: 19 YSRKVNKVYWRYK---HPVTGKFHALGTN---EAEAIAIATEANTRLAEQRTRQILAISD 72 R+ + + GK E EA+ T+ + + + Sbjct: 4 IQRRGKSSFLLVVEAGYDAKGKRLRRTKTIRIEDEALLKTTKKLRDYLNEELLKFKMEVE 63 Query: 73 RIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAV 131 + + + ++ ++ ++ T + + G I + Sbjct: 64 AGEYIAPEKMKLADFIKEWETKY----AVKELSETTLNNYLSHIKNHILPALGHMRIDQI 119 Query: 132 DVRDIAQLLDEYIAAGRP------RMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 I LD+ A R + + ++ + A + + NPA A K+P Sbjct: 120 KPVHIVNFLDQIKRADGKKKPLATRTIENAYLTIRNILQRAVEWQIIK--SNPASAVKKP 177 Query: 186 RRKITRQR----LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDD 241 + K + +E + +F + LA+ G R G++ +++S+I + Sbjct: 178 KSKKEAVKEVQVYDEKEVEALFRAVQNEPFHWRIFTTLAIAAGLRRGELLALEWSNIDLE 237 Query: 242 HLHVIQEK---TGSKIAIPLSL------RLNAINWSLRDVVARCRDYAVSAYL------V 286 + K G K ++ S RL ++ S+ + R + + L Sbjct: 238 KGVIRINKAIVKGRKRSVEKSPKTKKSNRLVSLPKSVVAELKLYRRHWLKQKLQAGDLWK 297 Query: 287 HFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD 346 G T T + + A I + H+ R S L QG+ Sbjct: 298 EEKEYLFCNIDGRHFYPTTPTTWWRRFTKRAGIRYIR-----LHDLRHTSATLLINQGVH 352 Query: 347 TQ---KLLGHKTQQQTD-RYHDD 365 + + LGH + T Y Sbjct: 353 AKIIAERLGHSDIRVTMDIYGHA 375 >UniRef50_A8L4Q7 Integrase family protein n=9 Tax=Actinomycetales RepID=A8L4Q7_FRASN Length = 477 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 114/327 (34%), Gaps = 38/327 (11%) Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LL 119 ++ ++ ++ + T + WL + I++ R +T + ++ + Sbjct: 129 REKLTKVQRAAELGVNVTAERRTVAVWLGEWLDIKE----GDGTRASTLRAYRWLINMHI 184 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNP 178 G + + D+ +L+ +G + V S++ + EA+ V N Sbjct: 185 VPVIGRVQLDKLTPLDVRRLVASAKKSGLSAGSVRHVHSLIRNALAEAERLDLV--ARNV 242 Query: 179 ALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSD 237 A A K P R L EE +++ ++ A L L G R G+I +++SD Sbjct: 243 AKAVKAPPTPHREVRALRPEEARRLVEVLRGERLEAVFACGLML--GLRRGEILGLRWSD 300 Query: 238 IWDDH--LHVIQE-------------KT-GSKIAIPLSLRLNAINWSLRDVVARCRDYAV 281 + D LHV Q KT S +P+ +L I R R Sbjct: 301 VDLDGATLHVRQTLQRVDGSLMFVPAKTERSHRRLPIPPKLVTILRRHRATQTAERTGLG 360 Query: 282 SAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYK 341 A+ + G ++ + F R A + W H+ R + Sbjct: 361 DAWTETGL--VFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLR-----LHDLRHAFASMLF 413 Query: 342 EQGLD---TQKLLGHKTQQQTDR-YHD 364 +G+ +LLGH T Q T Y Sbjct: 414 AEGVPARTVMELLGHSTIQLTMNTYTH 440 >UniRef50_Q0K8W4 Phage integrase family protein n=1 Tax=Ralstonia eutropha H16 RepID=Q0K8W4_RALEH Length = 348 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 63/374 (16%), Positives = 120/374 (32%), Gaps = 62/374 (16%) Query: 24 NKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAIT 83 YWR G +A T+A+ ++ + + + + T Sbjct: 7 RGDYWRVAIRKRG-------YPPQARTFDTKADAESWARQVEVEMDRGSFVDRREAERNT 59 Query: 84 TSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEY 143 L RY K G+ + ++ + I+A+ + +A D Sbjct: 60 LGDLLLRYSEEISPHKKGGEQEVLRIRKLRS------DPIAHYKIAALTGKVLAAYRDRR 113 Query: 144 IAAG------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR-KITRQRLSL 196 + +++ V A ++ NP ++PR + +RL Sbjct: 114 LKGDGERRPVSGSTVNRELTLISHVLNVANKEWDIHLAINPVSTIRRPRESRGRTRRLGA 173 Query: 197 EEWKKIFDIADATH--------------RYMGNAMLLALVTGQRLGDISRMKFSDI--WD 240 E ++F A+ + +LAL T R G++ +++SD+ D Sbjct: 174 AEEARLFAELSASPRNGRGHYDKGGSRNPSILPLTILALETAMRRGELLSLRWSDVFLED 233 Query: 241 DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ 300 + + K G +PLS + + L ++ D Sbjct: 234 RFVRLHDSKNGESRDVPLSTKAVSTLAPLAELATSASDRVF------------------P 275 Query: 301 VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKE---QGLDTQKLLGHKTQQ 357 A+ + F++A + A I+ FH+ R E L+ + GHKT Q Sbjct: 276 TSADAVKKAFTRACERAGIEN-----FRFHDLRHEGTSRIAERLDNVLELSAVTGHKTLQ 330 Query: 358 QTDRYHDDRGKGWS 371 RY+ R K + Sbjct: 331 MLRRYYHPRAKDLA 344 >UniRef50_C1CZ59 Putative Tyrosine recombinase xerC-like protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZ59_DEIDV Length = 379 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 116/390 (29%), Gaps = 45/390 (11%) Query: 7 KNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 K + Y + GK A T+ + Q Sbjct: 3 KRANGEGYIGRRKDGSGWGGYVTLGYGPDGKQ----------QRRYFSAKTQAEAREKLQ 52 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGM 125 L + +T + +LDR+ K D++ NT++ ++ R G Sbjct: 53 ALVSERNGGCLSSETLTLAAYLDRWLTH-----KQRDVKFNTHRSYEMTARVHIKPRLGK 107 Query: 126 KLISAVDVRDIAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQ 184 + + I +L+ +A G ++A +L +A + V G N A + Sbjct: 108 VQLDKLTPLHIEELVSALLAEGQSAKVALGCVKLLRTALTQAVRWQLV--GRNVAQSVTP 165 Query: 185 PRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW--DD 241 P+ Q + +E + +A + LAL TG R G++ +K+ I Sbjct: 166 PKHTPKEMQVWTPDEASRFLAVAREH--RLYALFYLALATGMRRGELLGLKWESINMLAG 223 Query: 242 HLHV----IQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 L V I + + P + D V R + S +L E Sbjct: 224 TLVVQHNLIDRVSSVTLETPKTRASRRTIALSPDTVEALRAHRHSQWLEQCKAGEKWQEH 283 Query: 298 --------GAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD--- 346 G + L F + AR+ H+ R S L + Sbjct: 284 GMVFPSDVGTLMFPANLMGAFRRLCAKARVPAIR-----LHDLRHTSASLLIRANVPPKV 338 Query: 347 TQKLLGHKTQQQTDR-YHDDRGKGWSKVAL 375 LGH T R Y + AL Sbjct: 339 VADRLGHTDPGFTLRVYAHVYEEQRRAAAL 368 >UniRef50_A1VGL4 Phage integrase family protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VGL4_DESVV Length = 417 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 68/393 (17%), Positives = 120/393 (30%), Gaps = 51/393 (12%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVN-----KVYW-RYKHPVTGKFHALGTNEAEAIAIATE 54 MA+ ++ P +Y ++++ +VY+ YK +G ++ + A Sbjct: 33 MAS-SKRIKTQYPGVYYREAQRIGGTGTERVYYALYKRDGRLIETKIGRQFSDDLTPAKA 91 Query: 55 ANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAK 114 A R R+ R A T T + Y K L Sbjct: 92 ALIRAQLIEGRRSTRKELRQAEMDNAPWTILTLWEEY--------KRRKPNLKGIITDQN 143 Query: 115 PVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGR-PRMAQVVRSVLIDVFKEAQHYGEVP 173 + + + L +G+ P + V +L + + G + Sbjct: 144 RFEVHLRHLQNMKPEEITTTLVDNLQLSLANSGKKPGTIKNVIELLRRIISFGEKKGLIT 203 Query: 174 PGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADA-THRYMGNAMLLALVTGQRLGDIS 231 P + P + + L+ E+ + ++ H+ G MLLAL TG R G+I Sbjct: 204 PSQI-CAHFEMPILNNQKTEDLTPEQLNNLIAAIESTKHKKAGQMMLLALYTGMRRGEIF 262 Query: 232 RMKFSDIWDDHLHVIQ--------EKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSA 283 +K+ I + K+G IPL+ + S+ S Sbjct: 263 NLKWEHIDWHRGFINIVGRDDGLGAKSGQCERIPLNDLARQLLLSVPK--------GQSR 314 Query: 284 YLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ 343 Y+ + + + A + FH R + L Sbjct: 315 YVFPGKSGGRLVD---------IRKQADALKKEAGLPDSFRP---FHGLRHVYASLLAST 362 Query: 344 G----LDTQKLLGHKTQQQTDRYHDDRGKGWSK 372 G + QKL+ HK+ T RY R K Sbjct: 363 GKVSMYELQKLMTHKSAAMTQRYAHLRDDALKK 395 >UniRef50_UPI0001C375E4 hypothetical protein RflaF_02473 n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C375E4 Length = 399 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 108/329 (32%), Gaps = 44/329 (13%) Query: 56 NTRLAEQRTRQILAISDR-IATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAK 114 ++ ++ +Q + D+ + I + +++ ++R +Y++ + Sbjct: 40 KKQIEKELQKQAILFEDKCMKGQVTANIKFQDFAEQWFEEYAK----LNLRNTSYERMKQ 95 Query: 115 PVSLLRERAGMKLISAVDVRDIAQLLDEY------IAAGRP---RMAQVVRSVLIDVFKE 165 + G + + R I Q +++ + GRP + A S + DVF Sbjct: 96 LTVRVYPAIGHLRLDKITSRHIQQFINDLALNGKSLKNGRPLSRKTAVHHLSFISDVFSY 155 Query: 166 AQHYGEVPPGYNPALATKQPR-RKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTG 224 A + NP P+ K + +LEE +F + + LA+ +G Sbjct: 156 AVKMEMLTD--NPCKRVTVPKGEKKEKDIYTLEEVAHLFQLLETAPLKYRVFFTLAIYSG 213 Query: 225 QRLGDISRMKFSDIWDDH----------------LHVIQEKTGS-KIAIPLSLRLNAINW 267 R G++ +++ DI +H ++ KT + ++ + + Sbjct: 214 FRRGEMLGLEWKDIDWEHNVISVRRTSNYTASKGIYTDTTKTKKSQRSLKFPQSVMDLLR 273 Query: 268 SLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPA 327 + R + + + G + NT + + + + Sbjct: 274 EYKAEQDEERVKLGTKWQDYDRLFVK--WDGRPMNNNTPYFWLKEFCEENNFRFCD---- 327 Query: 328 TFHEQRSLSERLYKEQGLDTQKL---LGH 353 H R +G+D + LGH Sbjct: 328 -IHSLRHFYASALINEGVDAATVSGALGH 355 >UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodobacteraceae RepID=A3V8A4_9RHOB Length = 386 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 67/388 (17%), Positives = 130/388 (33%), Gaps = 58/388 (14%) Query: 4 RPRKNNVSV-----PNLYPLYSRKVN-KVYWRYKHPVTGKFHALGTNEAEAIAIATEANT 57 RP+ V P + + K LG A +++ A EA Sbjct: 18 RPKDQRYDVFDASQPGFGVRVATSGALSWVLLTRENGRRKRITLGGYPAISLSKAREAAR 77 Query: 58 RLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS 117 + I + K T T ++ + +++Q + + Sbjct: 78 LALSE-------IQEGTFGRKNAPATFETAVEEW-------YAREQRAKKSFRQVEQAMR 123 Query: 118 -LLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 + G + + D+ +++D G+ A VR+ + F A + Sbjct: 124 LHVLPFLGRHQLDQIKKADLMRVIDRVAERGKLTQANRVRAFITRFFNFAIERDLL--MS 181 Query: 177 NPALATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKF 235 +PA A +P +I+R R LS +E +++ A+ G L ++T QR +++ M++ Sbjct: 182 SPAAALPRPAVEISRDRVLSRDELCAVWETAEQMGFPFGRITQLLILTAQRRDEVAGMRW 241 Query: 236 SDIWDDH----LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRS 291 S++ D + + K G + LS + A+ ++ L+ Sbjct: 242 SELDLDRARWIISKERAKNGKAHIVHLSPQALALLSTIP--------RQNGVDLIFTTTG 293 Query: 292 TSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQ----GLDT 347 S FSKA A S FH+ R + E+ + Sbjct: 294 RSAVSG------------FSKA-KAALDARSHVSDWRFHDLRRSAATFMAEELRITPVVV 340 Query: 348 QKLLGHKT---QQQTDRYHDDRGKGWSK 372 ++L H + + T Y RG+ + Sbjct: 341 DRILNHVSGTVRGVTAVY--LRGEHLAD 366 >UniRef50_UPI0001694281 DNA integration/recombination/invertion protein n=8 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694281 Length = 413 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 51/346 (14%), Positives = 109/346 (31%), Gaps = 43/346 (12%) Query: 57 TRLAEQRTRQILAISDRIATSKGKAITTSTWLD-RYQAIQDDRLKSGDIRLNTYKQKAKP 115 E + + + +T +++ ++ + ++ TY+ Sbjct: 50 REYLEDELHKFKIEVEAGEYIAPQKMTLRQFIENEWEPKYAS--NTENLSPLTYQTYMHF 107 Query: 116 VS-LLRERAGMKLISAVDVRDIAQLLDEYIA----------AGRPRMAQVVRSVLIDVFK 164 + + G K + + I +++ P Q + VL ++F Sbjct: 108 IENRIMPVFGHKNLEDIRTLHIVTFINDLSKPEARKDGKSGKLSPGTIQYIHRVLKNIFN 167 Query: 165 EAQHYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVT 223 A + + NP + K+P+ + T +E ++ R +L ++V Sbjct: 168 RATEWQLIKT--NPIVGVKKPKVEQTEFDFYDEDEAREAIAALSKEPRRWRLLILGSMVG 225 Query: 224 GQRLGDISRMKFSDIWDDHLHVIQEK----TGSKIAIPL------SLRLNAINWSLRDVV 273 G R G++ +++S++ D++ + K T A+ S R+ + D + Sbjct: 226 GFRRGELLALEWSNVDFDNMTLSINKSISLTKDGRAVEKAPKSKSSKRIVDMPDWYMDEL 285 Query: 274 -------ARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSP 326 + + + + A G T ++ + Sbjct: 286 KVHEYEWKKEKLSVGDKWRGGDRQYVFHAGFGKPFHHTYPTEWWNGFTKRHNLK-----R 340 Query: 327 ATFHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTD-RYHDDRGK 368 FH+ R S L E G Q+ LGH Q T Y K Sbjct: 341 VRFHDLRHSSATLLIEAGASMKAVQQRLGHSKHQTTADIYAHVTKK 386 >UniRef50_C5V3D2 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3D2_9PROT Length = 357 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 63/371 (16%), Positives = 121/371 (32%), Gaps = 49/371 (13%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQ 62 +PRK +P K Y+ K+ LG A+ + + Sbjct: 31 GKPRKTRKDLP---QRVYFKHCAYYFV---NTDNKWIPLGKEYCIAMQKWAAMLQPVIGK 84 Query: 63 RTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRER 122 + S+ +D Y + K T +++LR Sbjct: 85 QR-------------------LSSVMDTYIKEELPLRK-----PLTQTDYLASLAILRPV 120 Query: 123 AGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALAT 182 G V+ ++I P + +VL +V +A G + NP Sbjct: 121 FGDMFPEDVEPKNIYAF---MRMRNAPVRSNRDVAVLSNVMNQAIKMGLI--NTNPCKQV 175 Query: 183 KQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH 242 ++ + + E ++ + L L+TG R GD+ ++ + +D Sbjct: 176 RRNVENPRTREVLDSEIVAFLPHC---PEWLQAYIRLKLLTGLRQGDMLSIRLDQLREDG 232 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 L V K G K+ S L ++ + + R S +L++ R G ++ Sbjct: 233 LFVQTWKRGKKLLFSWSDNLR----TIVETIKSLRHRVTSLHLINSDR------DGTKLT 282 Query: 303 ANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRY 362 + +++A A ++ R+ +E G + K+LGH + T R Sbjct: 283 TSGFKSAWARAMKRAIEAGSLTETFAENDLRAKVATEARELGQNATKILGHSSDAVTKR- 341 Query: 363 HDDRGKGWSKV 373 H +RG + Sbjct: 342 HYERGTSKVEP 352 >UniRef50_A6P1V8 Putative uncharacterized protein n=2 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P1V8_9BACE Length = 409 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 62/391 (15%), Positives = 123/391 (31%), Gaps = 63/391 (16%) Query: 21 RKVNKVYWRYKHPVTGKF---HALGTNEA--EAIAIATEANTRLAEQRTRQILAISDR-I 74 +K + G++ + G + AI + A T+ + +R I Sbjct: 3 KKRANGEGSIRKKPNGRWEGRYTQGIDPNTGRAIQKSVSARTQAECKEKLAKAIRDNRGI 62 Query: 75 ATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDV 133 + + T + W + + IR NT K + + G + + Sbjct: 63 PVNHNEDYTVAEWCRLWFETYSKPV----IRPNTAKTYENMIENHIVPAIGGVKLKRLTA 118 Query: 134 RDIAQLLDEYIAAG-------------RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPAL 180 I ++ ++ G + + VL K+A +P YNP Sbjct: 119 IQIQKMYNDSKTNGRVQRFEKKTDTALSGSTVRRIHMVLSSALKQAVKERIIP--YNPCD 176 Query: 181 ATKQPRRKITRQRLSLEEWKKIFDIADATHRY-MGNAMLLALVTGQRLGDISRMKFSDIW 239 + P ++ + E K+ +Y + L L +G R G++ +++ D+ Sbjct: 177 NCRIPPKEKKEMAIIPSE--KLGVYLSEAEKYGVLPMFFLELSSGLRRGELLALRWDDLN 234 Query: 240 ---------------DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAY 284 D L + + KT + S+R A++ D++ R + Sbjct: 235 VKDRILSVSKQVTRIDGELVITEPKTKN------SVRKVALSQQAVDILVREHEQHPDNP 288 Query: 285 LVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG 344 ++ G + ++ K A I+ FH+ R + G Sbjct: 289 ILFPSP-----RTGGYWSPDAVSRINRKLLAKAGIE----ERVRFHDLRHTFATMALSSG 339 Query: 345 LDTQKL---LGHKTQQQT-DRYHDDRGKGWS 371 +D + L LGH + T D Y Sbjct: 340 VDVKTLSSMLGHYSAGFTLDTYTHITNDMQR 370 >UniRef50_A4XLL4 Phage integrase family protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XLL4_CALS8 Length = 360 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 59/371 (15%), Positives = 123/371 (33%), Gaps = 44/371 (11%) Query: 19 YSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 +K K ++ + G + + +EA L + ++ Sbjct: 7 IEKKKGKFQVVLEYGIDGNGKRIRKYK--TFDKESEAKKYLIQMLA------------NE 52 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 GK I + +LDR+ + TY + + +R+ + ++ ++ + Sbjct: 53 GKFIPLNEFLDRWLEEYAKNY----VAPKTYIKYKDSLKHVRKAFPSHTLQQLNTFELQK 108 Query: 139 LLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP--RRKITRQRLSL 196 ++ + + SVL + K A + + NP K P + + + Sbjct: 109 FFNQLSQTLSQASVRKIYSVLNNALKTAIKWNMLKE--NPLEFVKLPQKYEEKKIKVWDI 166 Query: 197 EEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQ--EKTGS 252 E KK + D + A+ LAL G R G+I + + ++ + +H+ Q +K G Sbjct: 167 ETVKKFLE--DIKDEKIHTAVTLALHAGLRAGEICGLTWDNVDFEKKCIHIKQALQKIGK 224 Query: 253 KIAI-----PLSLRLNAINWSLRDVVARC--RDYAVSAYLVHFFRSTSQAERGAQVKANT 305 +I I S+R + L + + R + E G + Sbjct: 225 EIIIKPPKSKTSIRTIYMTSYLYETLLEEYKRQEPLREAYKKLGNFVCIHETGNPFCPDY 284 Query: 306 LTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQ---KLLGHKTQQ-QTDR 361 T F K + FH+ R + + + + ++LGH + + Sbjct: 285 FTHTFKKL-----VSCLGYPEIRFHDLRHTFATILLQAQTNPKIAAEILGHSNTKLFLNL 339 Query: 362 YHDDRGKGWSK 372 Y + K Sbjct: 340 YAHVLDEQKIK 350 >UniRef50_A6QD27 Site-specific recombinase, phage integrase family n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QD27_SULNB Length = 366 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 76/376 (20%), Positives = 124/376 (32%), Gaps = 38/376 (10%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYW-RYKHPVTGKFHALGTNEAEAIAIATEANTRL 59 MA R + +V L + K +KVY+ RY+ + +G Sbjct: 1 MAKRFKTRYKNVIYLETTTNNKPDKVYYIRYRENGKLREIKVGKYSEGIRENYCNQKLLE 60 Query: 60 AEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLL 119 R AT K K +T + +Y ++ K+ + N YK L Sbjct: 61 TVNAIRLGEQPPIINATHKRKIVTFDEIVTKYFKSKELHNKTNEQTKNRYKS------QL 114 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPA 179 +E G K I ++ DI + + + P+ + V+ A G NP Sbjct: 115 KEYIGSKDIYSITKNDILAIQTDMAQSRAPKTVNQYIQFIKAVYNYAIAEDLF-SGVNPV 173 Query: 180 LATKQPRRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDI 238 K+ + R+R LS++E K + + + LL+L TG RLG I + D+ Sbjct: 174 KGIKEQKIDNKRERFLSIDEIKALIEEVKENED-LYLFTLLSLSTGGRLGTIMAIAKKDL 232 Query: 239 W--DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAE 296 ++ + + K D D + L+ + + Sbjct: 233 DFNNNMITLNDIKN-------------------EDTYGGFFDNTLKEILIKRTANLKPND 273 Query: 297 RGAQVKANTLTMNFSKARDL---ARID-WGEGSPATFHEQRSLSERLYKEQGLD---TQK 349 + + TL SK ID + H R +G QK Sbjct: 274 KLIVMNERTLRRQLSKVLTKLFNVGIDADDRKNRVVIHTLRHTFASQLAIKGTPIFTIQK 333 Query: 350 LLGHKTQQQTDRYHDD 365 LL HK +QT RY Sbjct: 334 LLNHKDIKQTLRYAKL 349 >UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UGI0_METS4 Length = 413 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 64/384 (16%), Positives = 123/384 (32%), Gaps = 26/384 (6%) Query: 8 NNVSVPNLYPLYSRKVNKVY-WRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQ 66 + ++P LY + K + RY+ + +G ++ A E + + R Sbjct: 21 PDATLPGLYLIVQPSGKKSWAIRYRINRQPRKFTIGPYPLFDLSAARERARQALQMAARG 80 Query: 67 ILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGM 125 + ++ A + LK + +Q + + G Sbjct: 81 LDPYREKKAAEAAAIEAKDQVSRVVATYVERHLKVKG-KPGYAEQAEGLLRNHVLPHWGH 139 Query: 126 KLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 + I + D+ L+D G A V + +F A + P L K P Sbjct: 140 RRIGDIGRADVIALVDGLTDRGMTTGANRVFATTRALFNFALGRDLITST--PFLGLKPP 197 Query: 186 RRKITRQR-LSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLH 244 +R R LS E + + A+ G + L L+TG R + M +S++ Sbjct: 198 LPNPSRDRVLSDAEVRWAWLCAERIGFPFGPMVQLLLLTGTRRNETGEMVWSELDGTVWT 257 Query: 245 VI--QEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER----G 298 + + K + +PL +++A A V ++ A Sbjct: 258 IPGARTKNSLEHVVPLPPAAI-------EILAAVPRIAGRPGYVFTRNGSTPASDLSAGK 310 Query: 299 AQVKANTLTMNFSKARDL-ARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHK 354 +++A LT+ S+A T H+ R + G D + +L H+ Sbjct: 311 RRLEAAMLTVAQSEAARRGEDPKAVTIPRWTLHDLRRTAASGMARLGTDPHVVEAVLNHR 370 Query: 355 T---QQQTDRYHDDRGKGWSKVAL 375 + Y+ + AL Sbjct: 371 SGTISGVAAVYNRYAYLNEKRAAL 394 >UniRef50_C0GUW3 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUW3_9DELT Length = 414 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 136/395 (34%), Gaps = 51/395 (12%) Query: 10 VSVPNLYPLYSRKVN-----KVYWRYKHPVTGKFH--ALG------TNEAEAIAIAT--- 53 P + Y+ ++ + GK H ALG + ++ A +A Sbjct: 7 TKYPGVRYREHPTRKHGVQFDKYFSIRYTLDGKRHEEALGWASEGWSPQSAAEELARLKK 66 Query: 54 -----EANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNT 108 E LAE+R + + ++ I K + I ++T+ ++ + + + Sbjct: 67 AQRTGEGALTLAERREMENVRRAEDIKLKKEQEIASTTFNIIWEKYFLNSQHEKAYK-SW 125 Query: 109 YKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAA-GRPRMAQVVRSVLIDVFKEAQ 167 ++ ++ G + V + ++ E A PR SV+ VF A Sbjct: 126 DTERHLYKKWIQPFIGEVFFTKVTAFHLEKIKKEMRDASLSPRSIGYALSVVRQVFCYAS 185 Query: 168 HYGEVPPGYNPALATKQPRRKITR-QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQR 226 +G + G +P K P R + L+ E + + D+ + + + L+AL G R Sbjct: 186 DHG-IFEGVDPVSLVKMPHYDNRRIRFLTHSEAEILLDVLCFSSQNTHDIALIALHCGPR 244 Query: 227 LGDISRMKFSDIWD--DHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAY 284 G+I + + DI + K IP++ R+ R ++ R D SA Sbjct: 245 AGEIFSLTWQDIDFSQGLVTFRDTKNKYVRHIPITKRV-------RKMLERRSDDRSSAL 297 Query: 285 LVHFFRSTSQAERGAQVKANTLTMNFSKARDLA----RIDWGEGSPATFHEQRSLSERLY 340 + + + ++ F + ID FH R Sbjct: 298 VFPDRNGGRRKK---------VSKAFERTIKELGWNKGIDDPR-QKVVFHTLRHTCASWL 347 Query: 341 KEQGLD---TQKLLGHKTQQQTDRYHDDRGKGWSK 372 G+ ++ LGHK QT+RY + Sbjct: 348 VMAGVPLYTVKEYLGHKQISQTERYAHLAPDSLKQ 382 >UniRef50_A6SV87 Site-specific recombinase, phage integrase family n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SV87_JANMA Length = 328 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 63/358 (17%), Positives = 123/358 (34%), Gaps = 57/358 (15%) Query: 21 RKVNKVYWRYKHPVTG-----KFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIA 75 RK ++ + + G K + +A A+ A E + + R IL Sbjct: 5 RKRAADQFQARVRIKGNPELSKTFS---TKAAAVHWADEQERLVKQGRGSAIL------- 54 Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRD 135 +T + LDRY K L ++ + + + Sbjct: 55 --LANNLTITAALDRYAREVTPLKKGWKQELVRLRRWQS------NPLAQLTMPQLRAAE 106 Query: 136 IAQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPR-RKITRQR 193 +A+ D+ ++ G ++ +++ V++ A + NP ++P+ + +R Sbjct: 107 LAKYRDQRLSDGLGANTVRLELALISHVYEVAIKDWGLEVLINPVRIIRKPKLPRGRERR 166 Query: 194 LSLEEWKKIFDIADATHRY-MGNAMLLALVTGQRLGDISRMKFSDIWDDH--LHVIQEKT 250 L+ E + + + ++LAL T R G+I+ + +I D + + Q K Sbjct: 167 LTEGEEDLLLEYCKKKGAALLRLVIILALETAMRRGEIASLHTENIDLDSRLIFLDQTKN 226 Query: 251 GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNF 310 G K +PLS R + LV + + ++ F Sbjct: 227 GDKRKVPLSRRAQKELENYL--------CGKHGELV-------------PLHPDNISGAF 265 Query: 311 SKARDLARIDWGEGSPATFHEQRSLSERLYKEQG---LDTQKLLGHKTQQQTDRYHDD 365 S+A + I T H+ R + E+G ++ + GHKT RY Sbjct: 266 SQACKVCGIS-----GLTLHDLRHEATSRLFEKGFNMMEVAAITGHKTLTMLKRYTHL 318 >UniRef50_C0GET2 Integrase family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GET2_9FIRM Length = 386 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 65/403 (16%), Positives = 118/403 (29%), Gaps = 59/403 (14%) Query: 1 MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHAL--GTNEAEAIAIATEANTR 58 MA R + +Y + K + G +AE EA Sbjct: 1 MARRSKGEGS----IYQRSDGRWQGRVVIGKDEQGKTKYQFFYGKTKAEVTKAVKEA--- 53 Query: 59 LAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS- 117 + ++ T + W + + A K +I+ +TY Sbjct: 54 ---------VGKVEKGIDINAGKTTFTEWFEIWLAS-----KKNNIKPSTYDTYETFWRV 99 Query: 118 LLRERAGMKLISAVDVRDIAQLLDEYIA-AGRPRMAQVVRSVLIDVFKEAQHYGEVPPGY 176 ++ G + + + +LLDE PR + + + + K A + Sbjct: 100 HIKSALGHMKLDKIQPHHVQKLLDEKQGGELSPRSVRYIHTTINTALKSALKQRIISFNP 159 Query: 177 NPALATKQPRRKITRQ--RLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMK 234 A + P+ ++ L+ ++ K A + + LAL G R G++ ++ Sbjct: 160 ADAELLELPKNTKIKEVKPLTQDDVKAFIATAKEDKFSVAYILSLAL--GMRKGEVLGLQ 217 Query: 235 FSDIWDD----------------HLHVIQEKTGSKIAIPLSLRLNAINWS---LRDVVAR 275 + +I + L + KT S + L S + V R Sbjct: 218 WENIDFEQKTLTIKNNLTRVKGKGLVLTTPKTASSNRVVLLPEKILTLLSEHGRKQAVER 277 Query: 276 CRDYAVSAYLVH--FFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQR 333 A Y F E G V F K + A + H R Sbjct: 278 EIAKASGKYSEAEGFDNMVFTYEEGKPVCPRYFERKFKKVLEKAGLSQA-----GLHSLR 332 Query: 334 SLSERLYKEQGLDTQKL---LGHKTQQQTD-RYHDDRGKGWSK 372 L E G++ + + LGH T Y + + + Sbjct: 333 HSYGTLQNEAGVNMKAIQATLGHSKASFTMSVYTQNTTELQRE 375 >UniRef50_A7FCB1 Shufflon-specific DNA recombinase n=2 Tax=Enterobacteriaceae RepID=A7FCB1_YERP3 Length = 375 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 57/311 (18%), Positives = 111/311 (35%), Gaps = 54/311 (17%) Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSG---DIRLNTYKQKAKPVSLLRERAGMKLISAVD 132 ++ K I S LD Y K G R+NT K+ L + + Sbjct: 2 KTRVKNIPLSKALDIYLDKISFFKKGGMQEHYRVNTIKKYK---------LSTLLTNNIT 52 Query: 133 VRDIAQLLDEYIAAGRPR-------MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQP 185 DIA+ DE + +P ++ ++L +FK + NP L ++P Sbjct: 53 TVDIAEYRDERLKTVKPNGKTISSNTVRLELALLSHLFKVGIVEWGIAR-ENPVLLVRKP 111 Query: 186 RR-KITRQRLSLEEWKKIFDIADATHR-YMGNAMLLALVTGQRLGDISRMKFS--DIWDD 241 + + +R+ E +++ AD + + LA+ T R G+I +++ D+ Sbjct: 112 KASEGRNRRVQPAEHRRLIRYADEHSTGECASIINLAIETAMRQGEILSLQWEYVDLRQG 171 Query: 242 HLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQV 301 H+ + K G+ +PLS + R+++ +C + + + Sbjct: 172 VAHLPETKNGTSRDVPLSAKA-------REILRKCSPKSSGSVFSY-------------- 210 Query: 302 KANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQG----LDTQKLLGHKTQQ 357 +N + + I FH+ R + E G ++ + GHK+ Sbjct: 211 TSNGFKSAWRCIIIKSGIKD-----LHFHDLRHEGVSRFVESGRLNIMEVAAISGHKSLS 265 Query: 358 QTDRYHDDRGK 368 RY + Sbjct: 266 MLKRYTHLKAS 276 >UniRef50_D2SF19 LigA n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SF19_9ACTO Length = 397 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 64/381 (16%), Positives = 118/381 (30%), Gaps = 65/381 (17%) Query: 18 LYSRKVNKVYWR--YKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIA 75 + +R Y+ P + + +A EA + L ++ Sbjct: 7 RITLSDGSARYRARYRDPGGRQHERRFVRKVDAQRWLDEATSAL----------VTQTWT 56 Query: 76 TSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVR 134 +T + W DR+ A Q ++ +T + + + G ++ V Sbjct: 57 APARGRVTVADWADRWLASQT------GVKPSTLYRYGNLLRTHVLPTWGKHQLADVTHA 110 Query: 135 DIAQLLDEYIAAGRPR-MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRR-KITRQ 192 D+A + + + G + V + A G +P NPA PR + + Sbjct: 111 DVAVWVAKLLGQGSAAGTVRQAHRVFSLLLGLAVRDGRIP--RNPAERVPLPRVIRSEPR 168 Query: 193 RLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIW------------- 239 L+ +E +++ D A A + + L TG R G+++ ++ + Sbjct: 169 FLTHDEVERLADAAGAEG----DVIRLLAYTGLRFGEMAALRVRRVDFLRRRLTIAEAVT 224 Query: 240 --DDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAER 297 L KT + +PL L RC LV Sbjct: 225 EVGGRLEFGTPKTHQQRTVPLPATLAEPLAR------RCEGKQGDDLLVTTAS------- 271 Query: 298 GAQVKANTLTMN-FSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGH 353 G ++ F A A + T H+ R + L G Q++LGH Sbjct: 272 GTVLRLRNWRRVVFDPAVRAAGLSD-----VTPHDLRHTAASLAVSSGATVKAVQRMLGH 326 Query: 354 KTQQQT-DRYHDDRGKGWSKV 373 + T D Y + + Sbjct: 327 ASAAMTLDVYSGLVDDDLAAL 347 >UniRef50_C5SIT1 Integrase family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIT1_9CAUL Length = 356 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 68/365 (18%), Positives = 125/365 (34%), Gaps = 50/365 (13%) Query: 18 LYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 Y+ + ++ P + G ++ A +A +E + RI S Sbjct: 13 RYTDRHGNTRHYFRRPGHKQVALPGKPGSKEFMAAYQAALSGSEGKP--------RIGAS 64 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRE-------RAGMKLISA 130 K K + L Y R +++ + K + RE +AG L+ Sbjct: 65 KEKPGSFGALLSVYYDSAKFR---NELKPQSQKAYRILLEQFRELEVTPGVKAGDCLVKD 121 Query: 131 VDVRDIAQL-LDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKI 189 + +L +D P A+ + L VFK A + NPA + P+ K Sbjct: 122 FRPAHLNKLVIDGLADR--PGQAKNMIKCLRGVFKCAIRNEMI--DSNPAREVETPKAKS 177 Query: 190 TR--QRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQ 247 S + + + + A+ L L TGQR D++RM + + +HV Q Sbjct: 178 KDGIPAWSDADIEAFCKHWPSGTKQ-RLALALLLYTGQRRSDVARMGRQHVREGRIHVRQ 236 Query: 248 EKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLT 307 KT +++AI + L + + E G + Sbjct: 237 MKTDARLAIRIHSELQKEL----------------DLVPPGQMTFMLTEWGKPFSLAGFS 280 Query: 308 MNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQK---LLGHKTQQQTDRYHD 364 + F K + A + + H R + R+ E G ++ +LGH++ + +RY Sbjct: 281 IWFKKQAEDAGVQDR-----SAHGLRKAAGRMLAEAGCTAKQIMAILGHQSMTEAERYTR 335 Query: 365 DRGKG 369 + Sbjct: 336 TADQE 340 >UniRef50_D1A578 Integrase family protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A578_THECD Length = 409 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 63/400 (15%), Positives = 117/400 (29%), Gaps = 55/400 (13%) Query: 3 ARPRKNNVSVPNLYPLYSRKVNKVYW--RYKHPVTGKFHALGTNEAEAIAIATEANTRLA 60 +P + + P L ++ + + R + P TG A A Sbjct: 6 GKPASSRKARPRLRDGVMKRGSTWSYVIRVRDPETGVSKPKWVGGFVTEEEAKAARDEAR 65 Query: 61 EQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LL 119 + R IT + +LD + +I+ T V + Sbjct: 66 --------VKARRGEYIDRTTITVAQYLDEWLEAHAV-----EIKPRTLAGYHTMVRLYI 112 Query: 120 RERAGMKLISAVDVRDIAQLLDEYIAAG-------RPRMAQVVRSVLIDVFKEAQH-YGE 171 + G + AV I +L + +A+G V ++L F +A Sbjct: 113 KPHIGDLRLQAVRPAQITKLYRDLLASGGEGGKPLSVSTVMRVHAILHKAFADAVLVDEL 172 Query: 172 VPPGYNPALATKQPR--RKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGD 229 +P NPA K+P+ + + + + + LA TG R G+ Sbjct: 173 IP--SNPAERAKRPKGLVREADGIWTPAQLRVFLQAVREH--RLFAFYHLAAYTGARRGE 228 Query: 230 ISRMKFSDIWDDHLHVI---------------QEKTGSKIAIPLSLRLNAINWSLRDVVA 274 + +++S++ D + K+G + + A+ R Sbjct: 229 LLALRWSNVDLDGKRITIGGSAGVVKGRRIEGTTKSGRSRVVTIDDETVAVLREHRKAQL 288 Query: 275 RCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSP------AT 328 + A A+ ERG + +++ +K P A Sbjct: 289 AEQFQAGEAWRGAEDGYVFTTERGEPIHPDSVGWLMTKTIRAYNNPPQGPKPAEPLPHAR 348 Query: 329 FHEQRSLSERLYKEQGLD---TQKLLGHKTQQQTDR-YHD 364 H+ R + G+ LGH T R Y Sbjct: 349 VHDLRHIHATTLLLAGVPVHVVAARLGHADPAITLRVYAH 388 >UniRef50_Q30U09 Phage integrase n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30U09_SULDN Length = 377 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 71/377 (18%), Positives = 131/377 (34%), Gaps = 40/377 (10%) Query: 16 YPLYSRKVNKVYWRYKHPVTG-KFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRI 74 Y + + Y RYK K +G +E + N R+ + +I Sbjct: 15 YYIKADGTKSYYVRYKDEENRLKRVKIG-DETDGTTEVYCKNKRIEILNAQNKGEQPPKI 73 Query: 75 ATSKGKAI-TTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDV 133 + K + T + D+Y D +T+ + +K + G + ++ + Sbjct: 74 VKNHRKKVLTLNEVADKYFTT-------KDSSRSTFDRISKYKKHIAPVLGHRGVTGITK 126 Query: 134 RDIAQLLDEYIAA--GRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR 191 D+ + D I P+ A +V + +F + NP L ++ + + TR Sbjct: 127 NDLISIQDSIIKEQNLSPQTANMVIELFGTIFIYGFKEE-MYEAVNPTLKVQKFKVRNTR 185 Query: 192 QR-LSLEEWKKIFDIADATHR------YMGNAMLLALVTGQRLGDISRMKFSDIW--DDH 242 +R L+ E +++FD A + LAL TG R+ + +K DI +D Sbjct: 186 ERFLNKLEIEELFDAAKQYDEKNANGGVLELFTKLALTTGARMESVLNIKKCDIDLQNDI 245 Query: 243 LHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVK 302 + ++ K G ++ S + L + + + + YL+ S G ++ Sbjct: 246 IRLVDLKNGGEVY---SGYITDTTREL--LYQKSKAIKFTDYLI------SFNNNGKKIG 294 Query: 303 ANTLTMNFSKARDLA---RID-WGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKT 355 A L D +D + H R + Q+LL H Sbjct: 295 ARQLQTRLKPLLDDLFNQGLDVKDRKNRIVIHSLRHTCASQLAMANVPILQIQELLNHAD 354 Query: 356 QQQTDRYHDDRGKGWSK 372 QT RY +G K Sbjct: 355 ISQTVRYAKLQGDANKK 371 >UniRef50_C2Z776 Prophage LambdaBa04, site-specific recombinase, phage integrase n=10 Tax=Bacillus cereus group RepID=C2Z776_BACCE Length = 379 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 56/379 (14%), Positives = 117/379 (30%), Gaps = 45/379 (11%) Query: 21 RKVNKVYWRYK---HPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATS 77 ++ +K + P+TGK A A + + ++ Sbjct: 7 KRGDKWSFTIDVGIDPMTGKRKQKSKGGFRTKKEAQNAAANM--------ITEIEKGMYF 58 Query: 78 KGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVS-LLRERAGMKLISAVDVRDI 136 K ++ LD + + ++ ++++ +Y++ V + G K I ++ I Sbjct: 59 DDKQLSV---LDIWGKL--KPIRKAELKITSYEKDMSLVKLYILPTFGYKKIKSIKPVII 113 Query: 137 AQLLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITR-QRL 194 E G + +FK A + + K+PR + + Sbjct: 114 QSYYAELKEKGLSNGTISNIHRCFRCIFKHAVEWEILHDNI--MNKVKKPREEQGEMKTW 171 Query: 195 SLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEK----- 249 S +E + ++ LLA+ TG R G++ + + DI D+ ++ K Sbjct: 172 SSKECNRFLHYLKEKNKKYYIFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKT 231 Query: 250 --------TGSKIAIPLSLRLNAINWSLRDVVARCRDYAV--SAYLVHFFRSTSQAERGA 299 T +K + + + L+ A + +L + + Sbjct: 232 EEGLFKAATKTKSSNRSISISSFVVTELQSYYAYKKKEFFRWGIHLNEEAYIFAGNTIHS 291 Query: 300 QVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLD---TQKLLGHKTQ 356 + + A + H+ R L + G Q LGH + Sbjct: 292 PLHIDAPHRFLKDHYKKAGVPRIR-----IHDLRHTHATLMLQAGEHPKIVQDRLGHSSI 346 Query: 357 QQT-DRYHDDRGKGWSKVA 374 Q T D+Y + A Sbjct: 347 QMTLDKYSHITQNMQQQAA 365 >UniRef50_Q9T1P3 Integrase n=4 Tax=root RepID=Q9T1P3_BPD3 Length = 369 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 54/357 (15%), Positives = 109/357 (30%), Gaps = 43/357 (12%) Query: 20 SRKVNKVYWRY-KHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSK 78 ++ + YW TGK + A L +Q + + Sbjct: 3 YKRNDSAYWWISFKSATGKLV-----RRSSGTADYSAAKALEQQERAKAWKEKEMGVNPP 57 Query: 79 GKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQ 138 ++ + L+ +Y+ + LRE ++++ + +DI Sbjct: 58 RT----------FEEVIIPYLQHARQHQRSYETTVHRIKPLREYFAGRVVNDLGGQDIRG 107 Query: 139 LLDEYIAAG-RPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLE 197 + AG P + L + NP K + + L+ Sbjct: 108 YGAHRLDAGASPATINRELAALSAAINHC-NTELEWALPNPVKGRKMREAEGRDRWLTRA 166 Query: 198 EWKKIFDIADAT--HRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHV----IQEKTG 251 E + + A + + + LA+ TG R ++ +++ + + + K G Sbjct: 167 EVEALCRAARGQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAG 226 Query: 252 SKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFS 311 + +IP++ A R ++ +L+ F Sbjct: 227 KRRSIPINEGAMAALKRRMAF--RSETSPECPWVFARANGDRVI---------SLSAGFK 275 Query: 312 KARDLARIDWGEGSPATFHEQRSLSERLYKEQGL---DTQKLLGHKTQQQTDRYHDD 365 +A A+I + T H+ R G+ D + LLGH T T+RY Sbjct: 276 QACQAAKI-----ADFTIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHL 327 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.147 0.414 Lambda K H 0.267 0.0453 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,054,114,543 Number of Sequences: 3077464 Number of extensions: 78103548 Number of successful extensions: 307633 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2135 Number of HSP's successfully gapped in prelim test: 7024 Number of HSP's that attempted gapping in prelim test: 284925 Number of HSP's gapped (non-prelim): 10136 length of query: 375 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 245 effective length of database: 640,326,036 effective search space: 156879878820 effective search space used: 156879878820 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 94 (40.7 bits)