BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (127 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3W... 162 4e-39 UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=R... 160 1e-38 UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root Re... 156 2e-37 UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root... 156 2e-37 UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus Re... 155 4e-37 UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax... 150 1e-35 UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterob... 149 3e-35 UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax... 148 5e-35 UniRef50_Q7MZ44 Similarities with antitermination protein Q from... 148 6e-35 UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteria... 146 3e-34 UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifo... 145 3e-34 UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteria... 139 2e-32 UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia... 132 3e-30 UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia... 125 5e-28 UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersini... 123 2e-27 UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enteroba... 123 2e-27 UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escher... 121 7e-27 UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9Z... 113 2e-24 UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mi... 110 2e-23 UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acineto... 105 4e-22 UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23... 104 8e-22 UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhab... 104 1e-21 UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseud... 94 1e-18 UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteur... 92 7e-18 UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acineto... 92 8e-18 UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudom... 89 3e-17 UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudom... 89 3e-17 UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinob... 89 4e-17 UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenoph... 89 4e-17 UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemoph... 84 1e-15 UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellacea... 82 4e-15 UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseu... 82 4e-15 UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acineto... 82 6e-15 UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magneto... 79 5e-14 UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannh... 77 2e-13 UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella... 74 1e-12 UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candida... 68 6e-11 UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Man... 64 1e-09 UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae Re... 60 3e-08 UniRef50_B3H0X4 Putative uncharacterized protein n=1 Tax=Actinob... 58 7e-08 UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root Re... 56 3e-07 UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acineto... 56 4e-07 UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella... 55 8e-07 UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelo... 54 1e-06 UniRef50_Q0I4J0 Putative uncharacterized protein n=1 Tax=Haemoph... 53 3e-06 UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 52 5e-06 UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfo... 52 7e-06 UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Ta... 50 3e-05 UniRef50_P44192 Uncharacterized protein HI1421 n=9 Tax=Haemophil... 46 3e-04 UniRef50_Q021X5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 46 4e-04 UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax... 46 4e-04 UniRef50_D0S041 Putative uncharacterized protein n=1 Tax=Acineto... 45 8e-04 UniRef50_C4SVI1 ATP-dependent Zn protease n=1 Tax=Yersinia frede... 45 0.001 UniRef50_A3ZZC0 Extracytoplasmic sigma factor ECF-like protein n... 43 0.002 UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobac... 43 0.002 UniRef50_D1BY52 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_UPI00016C3CD3 WD-40 repeat protein n=1 Tax=Gemmata obsc... 42 0.005 UniRef50_Q0C1Q3 ECF sigma factor family protein n=1 Tax=Hyphomon... 42 0.006 UniRef50_C8WRE2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.008 UniRef50_B9TKF6 Putative uncharacterized protein (Fragment) n=1 ... 41 0.010 UniRef50_Q01WD0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.011 UniRef50_A4JX61 Putative uncharacterized protein n=1 Tax=Burkhol... 41 0.013 UniRef50_B0VKH6 Putative uncharacterized protein n=1 Tax=Acineto... 41 0.013 UniRef50_A6GD49 RNA polymerase sigma-70 factor, ECF subfamily pr... 41 0.014 UniRef50_C1ABY3 Sigma factor, ECF-like family protein n=1 Tax=Ge... 40 0.017 UniRef50_C1A7M9 Sigma factor, ECF-like family protein n=1 Tax=Ge... 40 0.018 UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostri... 40 0.020 UniRef50_A3I0X2 DNA-directed RNA polymerase specialized sigma su... 40 0.023 UniRef50_A2RP52 Putative uncharacterized protein ps612 n=2 Tax=L... 40 0.024 UniRef50_B4WLA9 Response regulator receiver domain protein n=2 T... 40 0.025 UniRef50_UPI0001C37E82 ECF subfamily RNA polymerase sigma-24 fac... 40 0.029 UniRef50_Q01ZV6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.038 UniRef50_D2LZ92 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.046 UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechoco... 39 0.047 UniRef50_UPI0001744968 hypothetical protein VspiD_19055 n=1 Tax=... 39 0.050 UniRef50_B5JNN4 RNA polymerase sigma factor, TIGR02999 family n=... 39 0.051 UniRef50_A6WBB3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.056 UniRef50_B1YHB9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.056 UniRef50_Q3SQV6 IstB-like ATP-binding protein n=3 Tax=cellular o... 39 0.059 UniRef50_B1I489 RNA polymerase sigma factor n=1 Tax=Candidatus D... 38 0.079 UniRef50_B6XKQ8 Putative uncharacterized protein n=1 Tax=Provide... 38 0.081 UniRef50_UPI000178967B RNA polymerase, sigma-24 subunit, ECF sub... 38 0.092 >UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3WTB9_ECOLX Length = 140 Score = 162 bits (410), Expect = 4e-39, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 74/126 (58%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLERWG WAA+ V + +AAGFK L+ + R +C D+D +II M+ L Sbjct: 1 MRNIQQVLERWGGWAASEGGSVYFPPVAAGFKNLLPATQSGRLKCSDNDGLIINSAMSCL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KK + L LL +YV M ++ K S ++ KRLQ AEG I+G L LD+ LEMD Sbjct: 61 KKKDPYLCTLLEWHYVQAMPVRAMGEKLGVSHTHVLKRLQAAEGFIDGCLAMLDVVLEMD 120 Query: 121 IVVNNS 126 V + Sbjct: 121 QSVQSK 126 >UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=REGQ_BP933 Length = 144 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 98/126 (77%), Positives = 107/126 (84%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+ VLERWGAWAANN+EDVTWS IAAGFKGLI KVKSRPQCCDDDAM+ICGC+ARL Sbjct: 1 MRDIRQVLERWGAWAANNYEDVTWSPIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 +NN DLHDLLVDYYV+G TFM+LA KH CSD IGKRL KAEGI+EGMLM L +RLEMD Sbjct: 61 YRNNRDLHDLLVDYYVLGETFMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMD 120 Query: 121 IVVNNS 126 V Sbjct: 121 RYVERE 126 >UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root RepID=A4TNH3_YERPP Length = 159 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 1/125 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VL RWG WA + +SSIAAGFKGL+ KS+ CCDDD +++ GC+ARL Sbjct: 19 MRDIQLVLARWGVWAR-YSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARL 77 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K+ + ++L++ +YV+ + ++A + + I +Q AEG I+G L L+++L MD Sbjct: 78 KQCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMD 137 Query: 121 IVVNN 125 + N Sbjct: 138 PFIEN 142 >UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root RepID=REGQ_BPAPS Length = 148 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 1/124 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ VLERWG WA +N+ + WS IAAGFKGL+ + RP C D+D II C+++L+ Sbjct: 3 RDIQQVLERWGTWARDNNTGIDWSPIAAGFKGLLPLRPSMRPSCSDEDGRIIDNCVSQLQ 62 Query: 62 KNN-SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + L++ YYV G + ++A + +G I +L AEG I+G L L +RL+MD Sbjct: 63 QVRQPEELSLIIAYYVKGYSKRAIARRRRVDEGLIRAKLLIAEGFIDGCLSLLAVRLDMD 122 Query: 121 IVVN 124 V Sbjct: 123 PEVK 126 >UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus RepID=B4EVI6_PROMH Length = 132 Score = 155 bits (392), Expect = 4e-37, Method: Composition-based stats. Identities = 61/127 (48%), Positives = 79/127 (62%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+Q VL RWGAW+AN + +SSIAAGFKGLI S +SR QC DDD + I + L Sbjct: 1 MRDMQEVLSRWGAWSANEGNSIDYSSIAAGFKGLIPSSRRSREQCSDDDGLKINKAVLHL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K NNS L L++ YYV S+A K S + KRLQ AEG IEG L +++L+MD Sbjct: 61 KVNNSYLFQLVIMYYVKNYPLRSMASKLGISHNEVAKRLQTAEGFIEGCLSVDNVKLDMD 120 Query: 121 IVVNNSN 127 ++ + Sbjct: 121 KIIRKHS 127 >UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N2N8_PHOLL Length = 139 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 2/126 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLE WG W ++ V W IAAGFKGLI S RP CCD+D +II C+A+L Sbjct: 1 MRNIQQVLECWGGWV-DDATGVNWPPIAAGFKGLIASTRSLRPSCCDNDGLIIDACIAKL 59 Query: 61 KKNNS-DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + + ++L YY + ++ S+A D + RLQK E ++G L LDI+LEM Sbjct: 60 QTVDKSEEIEVLFMYYALRLSKRSIARLIKVPDIEVRSRLQKGESFVQGCLAMLDIKLEM 119 Query: 120 DIVVNN 125 D + Sbjct: 120 DDEIQK 125 >UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBF3_9ENTR Length = 131 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLERWG WAA V +SS AAGF GL + R CCDDD + I + +L Sbjct: 1 MRDIQLVLERWGGWAAEGKSKVGYSSTAAGFSGLFPESERVRLSCCDDDGIAIDAAIGKL 60 Query: 61 KKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 D DL+ +Y+ ++ ++A + CS+G I ++L AE I+ L+ ++ LEM Sbjct: 61 ISVGRKDEFDLIDKHYIRDISKSAIAREMKCSEGKIRQKLMIAETFIDACLIMANVTLEM 120 Query: 120 DIVVNNSN 127 D ++ Sbjct: 121 DEWCKKTS 128 >UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax=Erwinia tasmaniensis RepID=B2VDR7_ERWT9 Length = 123 Score = 148 bits (374), Expect = 5e-35, Method: Composition-based stats. Identities = 53/122 (43%), Positives = 82/122 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+++L RWG WAA + ++ +A+GF+GLIT SR QC DDD +II C++RL Sbjct: 1 MRDIKLLLRRWGGWAALGERRLGYAPVASGFRGLITHHASSRLQCSDDDGIIIDSCISRL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K + + HD+LV +Y+ ++ S+A + C+DG I +++Q AEG I G+L AL+ LE + Sbjct: 61 AKVSKEQHDILVAHYLYQISLRSIARRRRCADGSIRRKIQTAEGFICGVLTALESELECE 120 Query: 121 IV 122 + Sbjct: 121 NL 122 >UniRef50_Q7MZ44 Similarities with antitermination protein Q from lamdoid prophage n=2 Tax=Enterobacteriaceae RepID=Q7MZ44_PHOLL Length = 143 Score = 148 bits (373), Expect = 6e-35, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 1/123 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ +L WG W + + WSS+ AGFKGL++ ++ CCD+D +II GC+A+L+ Sbjct: 3 RDIQKILLHWGGWVVHGRSGLGWSSVTAGFKGLVSRTSITKLSCCDEDGLIIDGCIAKLR 62 Query: 62 KNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + D + +Y GM+ S+ K+ ++ + KR+ AE I G L A D LE+D Sbjct: 63 NVQMEQECDFIECHYAKGMSKRSIGRKYKLNESEVRKRMAIAESFILGCLTASDETLELD 122 Query: 121 IVV 123 ++ Sbjct: 123 LLY 125 >UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=D1NX77_9ENTR Length = 156 Score = 146 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 79/124 (63%), Gaps = 2/124 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLE+W WA +N+ V +S IAAGFKGLI++K R C D+D +II +A+L Sbjct: 12 MRDIQLVLEKWAGWA-SNNPGVDYSHIAAGFKGLISNKEAPRLSCTDNDGIIIDSVIAKL 70 Query: 61 KKNNSDL-HDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K D +L+V +Y+ G++ +A K S+G + + +Q AEG ++G L + + LEM Sbjct: 71 KAVRKDEELELIVMHYLYGVSKRGIAKKLKVSEGRVRQMMQVAEGFVDGCLAMIGVVLEM 130 Query: 120 DIVV 123 D V Sbjct: 131 DSEV 134 >UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifoliae RepID=D2TCJ1_ERWPY Length = 140 Score = 145 bits (367), Expect = 3e-34, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 83/121 (68%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+I+++L+RWGAWA++ + ++S+A+GF+GLIT +R QC D D +I+ C++RL Sbjct: 19 MRNIKLLLQRWGAWASSGERRLGYASVASGFRGLITHHGGNRLQCSDGDGIILDSCISRL 78 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + HD+LV +Y+ ++ S+A + C+DG I K+LQ AEG + G+L AL+ LE + Sbjct: 79 AMESKEQHDILVAHYLYLISLRSIARRRRCADGTIRKKLQTAEGFVCGVLTALECELECE 138 Query: 121 I 121 Sbjct: 139 N 139 >UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=B5XSK3_KLEP3 Length = 114 Score = 139 bits (351), Expect = 2e-32, Method: Composition-based stats. Identities = 48/114 (42%), Positives = 77/114 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+ +++RWGAWAA+++ V W IAAGFK L+ K+R QC DD+ ++I GC+ARL Sbjct: 1 MRDMYEIMDRWGAWAASDNSGVDWQPIAAGFKDLLPHGKKTRQQCDDDEGIMIDGCVARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++L++ ++V+GM+ ++A K CSDG I L+ A G +EG+L + Sbjct: 61 RMCKPEEYELIIAHFVIGMSLRAIAKKRRCSDGKIRGELRSAMGFVEGVLCIIH 114 >UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia RepID=C4SH18_YERMO Length = 124 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M DIQ VL RWG WA +N + + IA+GF+G ITS K C D+D + I + L Sbjct: 1 MADIQTVLTRWGVWARDN-AHLDYPHIASGFRG-ITSGGKQLESCSDNDGLAIDTTVGYL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K+ + DL++ +YV G + S+A C++ I ++LQ AE I+G I LEM Sbjct: 59 KRAAREKELDLIIRHYVYGQSKASIARLKKCNEREIRRQLQIAESFIDGCFTQSHITLEM 118 Query: 120 DI 121 Sbjct: 119 HK 120 >UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia RepID=C4T548_YERIN Length = 121 Score = 125 bits (313), Expect = 5e-28, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M +IQ VL RWG WA N + + IA GFKG++ + K CCD+D ++I + L Sbjct: 1 MSNIQTVLARWGVWAREN-IHLDYPHIANGFKGMVM-RNKPAESCCDNDGLVIDKTIGNL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 ++ + + +L++ +YV G + S+A C++ I ++LQ AE IEG ++ D LEM Sbjct: 59 QRASREKELELILRHYVYGQSKASIARLKKCNEREIRRQLQLAESFIEGGIVQSDAALEM 118 Query: 120 DIV 122 + Sbjct: 119 HME 121 >UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JRS6_YERPY Length = 141 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 2 RDIQMVLERWGAWAANNH--EDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R++Q+V ERWG WAA+ V W +++ + L + +P C D+D + + C+A Sbjct: 3 RNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQLP--QASGKPSCTDEDGLTLDTCIAH 60 Query: 60 LKKNNSDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 + L++ Y+ G + +A + + LQ +E + G L+ L IRLE Sbjct: 61 MSTVFPQASLLILGQRYIGGHSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLE 120 Query: 119 MDIVV 123 MD V Sbjct: 121 MDPEV 125 >UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enterobacteriaceae RepID=D2U0V3_9ENTR Length = 142 Score = 123 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 2 RDIQMVLERWGAW-AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RDI+ +L WG W A N + V+W +A+GF + SR C D D ++I C++RL Sbjct: 3 RDIEKILLHWGGWCAGNPYASVSWLPVASGFNRFMPFST-SRLSCSDADGLVIDVCVSRL 61 Query: 61 KKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + DYY+ G++ ++A K + + KR+Q AEG + G L LDI+L++ Sbjct: 62 NTVGMARELSYIEDYYIRGISKRAIARKFAVREDEVRKRMQIAEGFVLGCLETLDIQLDI 121 Query: 120 DIVVN 124 D + Sbjct: 122 DTLYK 126 >UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escherichia coli RepID=B7UQG2_ECO27 Length = 117 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 64/110 (58%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI +L+ WGAW + + W IA +K ++ KSR QC +D+ II + RL++ Sbjct: 6 DICEILDDWGAWVVAGNSSIDWQEIADKYKNVVPHGKKSRRQCSNDEGRIIDISILRLER 65 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 ++L+V ++V+G++ ++A + CSDG I KRLQKA G + G + Sbjct: 66 YKQQEYELIVAHFVIGLSLRAIAKQQGCSDGTIRKRLQKALGFLTGYIAI 115 >UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9ZMR7_ECOLX Length = 162 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 7 VLERWGAWAANNHEDVTWSSIAAGFKGLI-TSKVKSRPQCCDDDAMIICGCMARLKKNNS 65 LE WGAW + + SS+ A F + +V +RP C DDD M+I + + + Sbjct: 19 WLELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDK 78 Query: 66 DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNN 125 +L+ YY G + ++A + S K L + G I+ R E+D ++N Sbjct: 79 KAFGILLSYYAHGSSKHAIAS-YYHSVARPRKMLCRGGGRIQK-PSLATCRREVDEILNA 136 Query: 126 S 126 S Sbjct: 137 S 137 >UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mirabilis RepID=C2LFC9_PROMI Length = 127 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 2/126 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M+ I ++E WG+W NN+ + +++ + + +VK R C D +I+ CM++L Sbjct: 1 MQKISKLMEAWGSWVVNNN--LYINTLTINKRENVPIRVKLRKACTDRQGIIVSVCMSKL 58 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KN+ ++LLVDYYV G TF+ LA H CSD YIGK+L+KAEGI+EGML+ ++ ++ Sbjct: 59 LKNHKKDYELLVDYYVFGQTFIQLAQAHRCSDTYIGKKLKKAEGIVEGMLIMAELIFIIE 118 Query: 121 IVVNNS 126 N++ Sbjct: 119 KNENST 124 >UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0S8S0_ACIJO Length = 136 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQCC-DDDAMI-ICGC 56 R +Q L +WG WA + N ++T++S G L + S Q DDDA++ I Sbjct: 12 RMMQNELAQWGKWARHASYNPSELTYTSPTYGLMRLKEGQKSSGIQVMLDDDALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + +L+ + DL+ + +Y+ G LA K I K L AE ++ L L + Sbjct: 72 VTQLRFSRPDLYQWIEFHYLKGYPIAVLASKTKVDRRNIDKFLLAAETWLDSRLDFLLCQ 131 Query: 117 LEMD 120 L+ D Sbjct: 132 LKKD 135 >UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23 n=4 Tax=Enterobacteriaceae RepID=D1P374_9ENTR Length = 176 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKS-RPQCCDDDAMIICGCMARLKK 62 +Q L R+GAW + + SS+ A F + + RP C DDD ++I + ++ Sbjct: 21 LQNWLARFGAWVYSGRLEKRQSSMIAEFMATVERRSYPDRPTCSDDDGLLIHDVVDQIYH 80 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 ++ +L+ YV + ++A + + ++ + + R E++++ Sbjct: 81 LDTIAFKMLLSRYVYCASDRAIASSYYEN-CEPRIMPRRNGLLRKRKPSISTCRREVEVI 139 Query: 123 VNNS 126 + ++ Sbjct: 140 LKST 143 >UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BH46_PHOAA Length = 174 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFK-GLITSKVKSRPQCCDDDAMIICGCMARLKK 62 I L WGAW + ++ F + S K+R C DDD M+I + + Sbjct: 28 IDSWLSLWGAWVYSGRIGKCQINMIYKFMVSVKPSNNKTRQMCNDDDGMLISRVVDSVMF 87 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 + + +L+ YY G + +S+A + K + ++ G ++ R E+D + Sbjct: 88 IDKKAYGILLSYYAHGASKLSIAS-YYHRVANPRKMMTRSGGRLKK-PSRGTCRREVDEI 145 Query: 123 VNNSN 127 +N S Sbjct: 146 LNAST 150 >UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseudomonas phage PAJU2 RepID=B5WZY8_BPPAJ Length = 124 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 1/114 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RD + +L +WG W S + A + + + DDDAM+I G +AR+ Sbjct: 3 RDAEELLTQWGKWVWQETGVPRCGSPMLAIMRDNVAMEQCLSASISDDDAMLIDGIIARM 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++ + + YY MT + + + + L +E +L + Sbjct: 63 GRRDEEMANCVRVYYATEMTMQQVGKLLNLNRLKVRELLIAGRCYVEAVLDMRE 116 >UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteurellaceae RepID=B0QXB5_HAEPR Length = 121 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR-PQCCDDDAM-IICGCMARL 60 D++ VL WG + + ++ + + + K R DDD + + + L Sbjct: 4 DVKRVLMLWGGYVRFTDC-KGYPTMQSFMRESPEMRTKRRYLARLDDDTLEKVDIQIRYL 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 +++ DLL YV G + K S G L+ AE +EG L+ I L Sbjct: 63 EQHFPKQFDLLFFRYVCGYEPNQVWRKLSLSKGSYENELRLAERFVEGALVGSQISL 119 >UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AB307-0294 RepID=B7GXQ5_ACIB3 Length = 132 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQCC-DDDAMI-ICGC 56 R +Q L +WG WA N N ++ + S + G L Q +D+A++ I Sbjct: 12 RMMQNELAQWGKWARNASFNPSELIYKSPSLGLMRLKEGFKSKGIQVTLNDEALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + +LK + DL+ + +Y+ G LA I K L AE ++ L Sbjct: 72 VMQLKLSRPDLYQWIEFHYLKGYPVAVLATHTKVDRRNIDKYLLAAETWLDSRL 125 >UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudomonas RepID=B1J5L6_PSEPW Length = 129 Score = 89.2 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRPQ-CCDDDAMIICGCMARL 60 D + +LE+WG W + + S + A + + S+ +R DD A+II G +ARL Sbjct: 13 DTEYMLEQWGWWRMSEMGVPRYVSPLYALMRDNVPSEGGARQHVITDDLALIIDGAVARL 72 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 K N + D + YY M + + S+ + ++ I+ Sbjct: 73 TKRNQQMGDFVWAYYGSKHPAMRVGREAGMSERKAREIIKAGVAWID 119 >UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=B7V4N4_PSEA8 Length = 124 Score = 89.2 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 4 IQMVLERWGAWAAN-NHEDVTWSSIAAGFKGLITSKVK---SRPQCCDDDAMIICGCMAR 59 ++ ++E++G W + N S + A K ++ + P DD A+ + +AR Sbjct: 6 LEFLMEQYGLWVWSDNGTPRGSSPMLALMKRNPANEKRFAAVAPCISDDRALQVDRFLAR 65 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 L + D L+ Y++ GM++ + + S ++ + + + Sbjct: 66 LYDEDPDAIRSLILYFIHGMSYRDIQDRMGISYADARMLVRAGLSALLACFVMEE 120 >UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNN9_ACTSZ Length = 116 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 2/107 (1%) Query: 10 RWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHD 69 R+G W N+ + + G KG +K P DD+ M+I + +K+ N D Sbjct: 9 RFGYW-GNSRLETDYPVATVGIKGADRTKPYLDP-LSDDEGMLIDKGLLLMKQINFDQFH 66 Query: 70 LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + YV + S + L +AE + G L+ ++ Sbjct: 67 VFMLTYVKRYDRADICHFKNISLKHYYNLLHEAESFLIGYLLRGEVV 113 >UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2TX54_9ENTR Length = 115 Score = 88.9 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 8/109 (7%) Query: 2 RDIQMVLERWGAWAAN--NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R ++ +LE WG W+ + E SSIA RP D++ I+ +A Sbjct: 3 RHVKDLLEAWGNWSMSRIGTEYKGMSSIA------PVKFDDDRPWLSDEEGEIVDKAVAG 56 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 LK+ + D ++++ +Y ++ +A YI + +AE I G Sbjct: 57 LKRYDIDGYNIICLHYQHHISCRMIAKNWKKRPDYITAYMGRAESYIAG 105 >UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemophilus influenzae RepID=Q4QKY2_HAEI8 Length = 121 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 3/100 (3%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI++ R+G WA + + +I + P D+ AM I ++ Sbjct: 8 DIKLTARRYGKWAREG-VGINYPAIQPFLRKSTPDHGI--PMLDDETAMRIHDATLIMRN 64 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 +L+ + + YV ++ + + S I L A Sbjct: 65 VTPELYQVFMLRYVSNLSQGDVGREMRVSVPTIKSYLYAA 104 >UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellaceae RepID=C6AM41_AGGAN Length = 168 Score = 82.3 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 4/116 (3%) Query: 11 WGAWAANNHEDV-TWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR-LKKNNSDLH 68 WGAW D ++ IA K +I + S P C D+ M+I + + KN+ LH Sbjct: 24 WGAWIRLGRLDKPEFNIIAKLMKSVIPADP-SEPVCSDEVGMMISELIEQFFFKNDRTLH 82 Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVN 124 ++ YYV T +A K + G + + + I + ++ ++ + Sbjct: 83 YIVFSYYVNKNTINRIAVKLRENCGEMKMQPCAGKSDI-RIPSLKTVKRNVEKELK 137 >UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseudomonas putida KT2440 RepID=Q88ML3_PSEPK Length = 113 Score = 82.3 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 17/123 (13%) Query: 1 MRDIQM----VLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGC 56 M +++ +LE WG W +S P DDDA+ I Sbjct: 1 MSNVEKSAEYLLEHWGRWVVLGSGVSCCAS---------RENTILDPMITDDDALFIDRL 51 Query: 57 MARLKKNNSDLHDLLVDYYV-VGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 + RL K + +++ YY + + K + + + I+G A+DI Sbjct: 52 VGRLSKRYPECGQVIIKYYTSRDTSLRDVGKKLGFGEEKTRQLWKAGVAWIDG---AIDI 108 Query: 116 RLE 118 R E Sbjct: 109 RRE 111 >UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A7FBC6_ACIBT Length = 166 Score = 81.9 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query: 4 IQMVLERWGAWAANNHEDVTWSS------IAAGFKGLITS-KVKSRPQC--CDDDAMIIC 54 I+ LE++GAW ++ + + + +G+ + +S PQC D+A + Sbjct: 19 IENWLEQFGAWINEDNAETYLGTRNTLTYLIDSVEGVKRDARKRSLPQCKISTDEARAVS 78 Query: 55 GCMARLKKNN----SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G + L+ N + D +V YYV G++ ++A CS + + L+ I G Sbjct: 79 GLLRDLRMNPNPTLQEWLDFVVLYYVHGLSEETIADISKCSRNAVRQDLKCGIAYIVGQR 138 Query: 111 MALDIRL 117 L +L Sbjct: 139 NTLRSKL 145 >UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8A2_MAGSM Length = 144 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 2/105 (1%) Query: 6 MVLERWGAWAANNHEDVTWSSIAAGFKGLITSK--VKSRPQCCDDDAMIICGCMARLKKN 63 +L+ W W+ + + + + + ++++ ++++ K Sbjct: 17 ELLQEWARWSRSGMSSQNPITSTQLLMRRAAGHVGRSLKYENSEQQSLLVDCVISKMAKI 76 Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 LL ++Y+ +A + S G + +AEG+ EG Sbjct: 77 FPHEVTLLQEFYLGKKGMRIIARERVFSYGKVQTLRSRAEGLFEG 121 >UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannheimia haemolytica RepID=A7JW96_PASHA Length = 157 Score = 76.5 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 2/114 (1%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVK--SRPQCCDDDAMIICGCMARLK 61 I+ +L WGAW + + ++ SR C D +I + Sbjct: 19 IEELLRLWGAWEFGGLDLESRVNMIYRLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVT 78 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 K + L D+L Y G + +A + D K + E I + A I Sbjct: 79 KRDVMLADILKQKYWFGRSERQIAIYYQLRDSEGRKERRWQEIIQDKCKKAERI 132 >UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SI66_HAHCH Length = 128 Score = 74.2 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 9/108 (8%) Query: 5 QMVLERWGAWAANNHEDVTWSSIAAGFKGLIT--SKVKSRPQCCDDDAMIICGCMARLKK 62 + L R+G W + F+ + T DD A+I+ +A L + Sbjct: 11 RDWLVRYGRWVRAGG-------VLPRFERVETCLDDYDGSELLTDDQALIVDKALALLSR 63 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + Y+ +A S G + L+ E I+ G+L Sbjct: 64 VQPFEGKAIKWAYIDRREIRVIARDLGRSYGAARELLRMGECIMSGLL 111 >UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W3_HAMD5 Length = 92 Score = 68.4 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 44 QCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 D++A I+ +ARLK +S +D++V Y ++ ++ I L ++E Sbjct: 1 MLPDNEAQIVDRAVARLKHFDSLGYDIIVACYRGKVSCRAIGRALKRDHKSISGYLTRSE 60 Query: 104 GIIEGMLMAL 113 I G + AL Sbjct: 61 AYIAGQVDAL 70 >UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Mannheimia haemolytica serotype A2 RepID=UPI0001BCFD6E Length = 146 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 28/142 (19%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR--PQCCDDDAMIICGCMARL 60 DI+ VL WG++ + ++ A + + K R P+ DD + + +L Sbjct: 4 DIKGVLNLWGSFVRFTDC-KGYPTMQAFMRESPQEREKQRYLPRLDDDTLAKVDRQIRKL 62 Query: 61 -------------------------KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 +++ +L YV G+ + K S G Sbjct: 63 DPAGKAKAYLANLAKPNDKREELESLESDELQFAILYLRYVAGLENKPIWQKLSLSKGAF 122 Query: 96 GKRLQKAEGIIEGMLMALDIRL 117 L+ AE +EG+L+ +IRL Sbjct: 123 ENELRLAERFVEGVLIGSEIRL 144 >UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae RepID=B7UQ12_ECO27 Length = 180 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 41/144 (28%) Query: 4 IQMVLERWGAWAANN------------------------------HEDVTWSSIAAGFKG 33 IQ L WG W+ + + A + Sbjct: 24 IQGKLRMWGRWSYIGGGKPGNMFNQLLASKKLTKTAVNEALRRIRESGIDKPELEAFLRE 83 Query: 34 LITSKVKSRPQ-CCDDDAMIICGCMARLKKNNSDLHDLLVDYYV-VGMTFMSLAGKHCCS 91 +I + KS C D +A+ I G +++ L D+L Y GM+ +A Sbjct: 84 MIAGRQKSWLSHCTDAEALRIDGVISKALARYPGLIDILRQRYEGRGMSKRKMAELLNEV 143 Query: 92 DGY---------IGKRLQKAEGII 106 I L+ AE I+ Sbjct: 144 HPEWCYATCRNRIDMWLRIAEFIL 167 >UniRef50_B3H0X4 Putative uncharacterized protein n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H0X4_ACTP7 Length = 161 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 6/105 (5%) Query: 5 QMVLERWGAWAANNHEDVTWSSIAAGFKGLIT--SKVKSRPQCCDDDAMIICGCMARLKK 62 + V + +GAW + + ++ F + K+ RP C D M+I + K Sbjct: 20 EEVFKMYGAWEFSGLDRDKRVNMIYKFMRSVEAIDKLGMRPVCNDQLGMLINEILTVRTK 79 Query: 63 NNSD----LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + + D Y G + +A D + E Sbjct: 80 HAKGDTVLMRDFFKQKYWFGRSERQIAMYMQKRDDEGKCLRRWQE 124 >UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root RepID=A5UER2_HAEIG Length = 122 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 2/114 (1%) Query: 4 IQMVLERWGA-WAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 ++ VLE+WG W + + S L T + DD+ + I + L + Sbjct: 5 VERVLEKWGNCWGRD-RIGTEYPSTTISIPVLPTVRKAHIRFLTDDECLKIEEQIMNLHE 63 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 ++ + +L+ YV + S + + K ++G I+ Sbjct: 64 DSLLQYQILMALYVQQANERDICTALHISPACMYRERAKGVRFLKGAFTGAKIK 117 >UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acinetobacter baumannii RepID=B0VTT6_ACIBS Length = 145 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 9/117 (7%) Query: 6 MVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRP-----QCCDDDAMIICGCMARL 60 LE++G W + V+ + +A T++++S + D +A+ + +A + Sbjct: 19 QWLEQYGLWVRSTKSKVSANPLACLIDQNDTTRIRSSKVSMPCEIEDYEAVEVSKLLAAM 78 Query: 61 KKNNSDLHD----LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + + LL+ Y ++ ++A H + K + K ++G + AL Sbjct: 79 HNDEREFLQERAWLLILKYENDWSYRTIANTHGVGKDTVRKEIDKGLAYLDGKIEAL 135 >UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPC2_HAHCH Length = 118 Score = 55.0 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 43/111 (38%), Gaps = 4/111 (3%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M + +LE+W W+ + + +SS + + P D +A + +++L Sbjct: 5 MNETPWLLEQWAQWSKMD-ASLGYSSSTPFSR--LNGSATRSPVITDQEAAAVDLAVSKL 61 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKH-CCSDGYIGKRLQKAEGIIEGML 110 + + ++ +++ YY+ G + + ++ I+ L Sbjct: 62 RTRDEEMGEVVRLYYMAGENLSYVVRRMPKLDRRKADLLVKSGVAWIDATL 112 >UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW5_DICNV Length = 118 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKN 63 I+ +L WG W+ + A F + D+ I + L+ N Sbjct: 3 IEELLVAWGEWSRKDVLPARPRCFIAAFCRRSARDADDSVELDDEACEQINEGLMVLRGN 62 Query: 64 NSDLHDLLVDYYVVG-MTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + +HD+L+ Y+ ++A +H S+ + ++ +EG L Sbjct: 63 HQRIHDVLISRYLYNEYNDKAVAKRHGISESTVKDYRRRGHLFLEGWLC 111 >UniRef50_Q0I4J0 Putative uncharacterized protein n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4J0_HAES1 Length = 134 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 17/127 (13%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQ--CCDDDAMIICGCMARL 60 D + +WG WA + SI+ + +D AM C+ + Sbjct: 7 DFKKKCRQWGYWA-TPRIGTEYPSISPSIP--VPQDKYCGKVDPINEDLAMEFERCVLIM 63 Query: 61 KKNNSDLHDLLVDYYVVGMTFMS------------LAGKHCCSDGYIGKRLQKAEGIIEG 108 +K +L+D+ + YV + + + S+ K L AE ++ Sbjct: 64 QKVTRELYDVFMVTYVYRLPLRNEYDRRRILVRKGICETLDISETTYKKYLYTAEISLKL 123 Query: 109 MLMALDI 115 ML Sbjct: 124 MLSQNRC 130 >UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0ATZ3_SYNWW Length = 206 Score = 52.3 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 48 DDAMIICGCMARLK------KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 +D +++ + L+ K + D+++ YY + S+A + I + Q+ Sbjct: 129 EDKLLLSSYIPALQEAVLAAKIKPEEWDIIIAYYAYNESDRSIAVRLKKPINTIKSKRQR 188 Query: 102 AEGIIEG 108 A ++ Sbjct: 189 AMARLQK 195 >UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALN5_DESPS Length = 126 Score = 51.9 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%) Query: 44 QCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + D++AM+I +ARL++ + + + L+ YY+ +A + + + + E Sbjct: 46 EISDEEAMLIDTAIARLRQRKASVAEALMVYYLSKENTSYVARELGMDRRKVTQLVSMGE 105 Query: 104 GIIEGML 110 + L Sbjct: 106 SWVAAWL 112 >UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N1K7_PHOLL Length = 103 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M+I + + + +L+ YV ++ ++A KH + +++ + + Sbjct: 1 MLIARVVDHIYHIDRVAFGMLLSRYVYCVSDRAIA-KHYHATVQPRIMIRRNGMLRKRKP 59 Query: 111 MALDIRLEMDIVVNNS 126 R E++ ++ + Sbjct: 60 SMSTCRREVEEILRAT 75 >UniRef50_P44192 Uncharacterized protein HI1421 n=9 Tax=Haemophilus influenzae RepID=Y1421_HAEIN Length = 92 Score = 46.5 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 36 TSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 K + RP D+ M I G + ++K +L+D+ V Y+ + S Sbjct: 8 AEKYRMRP-ISDELGMEIDGYLGVIRKVTPELYDVFVLTYIKRWEKQGIWRYLHISRREY 66 Query: 96 GKRLQ 100 RL+ Sbjct: 67 FNRLK 71 >UniRef50_Q021X5 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021X5_SOLUE Length = 196 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 5/100 (5%) Query: 18 NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVV 77 S+IA + P D + + + RL + + ++ +Y Sbjct: 98 GAAKRGGSAIAVTLDETVVPSSGRGP-----DVLELDEALDRLAQRDERKAKVIELHYFG 152 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 GMT +AG + + + L+ E + L D Sbjct: 153 GMTREEIAGAMNLTVATVKRDLRLGEAWLRCHLSGGDSGR 192 >UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI000045D91D Length = 125 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTWS-SIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 DI L RWG A + + A+ + K DDD + + G LK Sbjct: 5 DIDATLFRWGRHAKS-RIGTEFPCKCASWVADSQSKKHYHIDLTTDDDLIEMDGITKNLK 63 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + + +L+ YV+ L S + + L A+ + G ++A ++ Sbjct: 64 QYDEQAYYVLLGNYVMRYDEKQLVKDLDISKTTLYRSLTIAKSFVFGAVIAKNLS 118 >UniRef50_D0S041 Putative uncharacterized protein n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S041_ACICA Length = 170 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 4/88 (4%) Query: 24 WSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNN----SDLHDLLVDYYVVGM 79 + S L T + + Q D++A I + L+ + + + +YV+G Sbjct: 61 YMSDENLKDRLCTRRKGTCCQLNDNEARAIHRLILDLQSIDDEVLQEWIGAIWWHYVMGE 120 Query: 80 TFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +A I + ++ I+ Sbjct: 121 SIRDIAKSSDTYGSQIQQDIKCGLAFIK 148 >UniRef50_C4SVI1 ATP-dependent Zn protease n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SVI1_YERFR Length = 160 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 15/79 (18%) Query: 45 CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 C DD+ +++ + + ++ L +L +Y+ ++A + + Sbjct: 68 CTDDEGLLMDSVVGLVLQSTPGLIGILQQHYIYKKKRYTMAEEMQEAHPE---------- 117 Query: 105 IIEGMLMALDIRLEMDIVV 123 L R +D + Sbjct: 118 -----LSISTCRRRIDAWI 131 >UniRef50_A3ZZC0 Extracytoplasmic sigma factor ECF-like protein n=6 Tax=Planctomycetaceae RepID=A3ZZC0_9PLAN Length = 189 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 10/93 (10%) Query: 32 KGLITSKVKSRPQCCDDDAMI----------ICGCMARLKKNNSDLHDLLVDYYVVGMTF 81 K L + R + DDDA+I + +++L +L L+ Y G++ Sbjct: 95 KSLKRGGDRDRYEILDDDAVIDSQNVDELLDLDAALSKLANEEPELAKLVELRYFAGLSV 154 Query: 82 MSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 A S + + A + L + Sbjct: 155 DQSAQVLGVSPRTVKRNWAFARAWLGRELHLEE 187 >UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobacterium nucleatum subsp. polymorphum ATCC 10953 RepID=A5TWC9_FUSNP Length = 150 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGK 97 ++ + LK + ++++ YY+ GM +A K + + K Sbjct: 82 LVDSGIGYLKDCHFKHYEIIELYYIKGMKLKQIASKLGINPATVSK 127 >UniRef50_D1BY52 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BY52_XYLCX Length = 172 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 9/113 (7%) Query: 13 AWAAN------NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSD 66 AW +E + A L + + DD + + M L + + Sbjct: 55 AWVYATLRNVVGNEYRRRGRVTALVDKLGPMQDLAAAPVAVDDQLTVHAAMEALAEPDR- 113 Query: 67 LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 DLL Y ++ +A C+ + RL +A G ++ L D E+ Sbjct: 114 --DLLRMAYWEDLSAPEIAQILGCTPTAVRIRLTRARGRLKKQLSIDDPEEEV 164 >UniRef50_UPI00016C3CD3 WD-40 repeat protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3CD3 Length = 1112 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%) Query: 32 KGLITSKVKSRPQCCDDD-----AMIICGCMARLKKNNSDLHDL-LVDYYVVGMTFMSLA 85 K ++ + P DD I +ARL +++ L L+ YV G+++ A Sbjct: 109 KRESANRERPAPSPADDTLWAELRERIDAELARL----PEVYRLPLLLCYVQGLSYADAA 164 Query: 86 GKHCCSDGYIGKRLQKAEGIIEGML 110 + CS G + RL++ + G L Sbjct: 165 RRLGCSPGALRGRLERGREQLRGRL 189 >UniRef50_Q0C1Q3 ECF sigma factor family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1Q3_HYPNA Length = 194 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ + RL + + +++ Y GMT +A S+ I + + A + L Sbjct: 125 VLEKALIRLNVIDEEKAEIVELRYFGGMTLEEIAEIRGVSEATIKRNWRAARAWLLDCLN 184 >UniRef50_C8WRE2 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRE2_ALIAD Length = 179 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 DD ++ ++ ++ D+LV YV G+T +A + G + RL + Sbjct: 107 SDDSTLLRADLARAMRAIRAEERDVLVLAYVQGLTLREIAERLQIPLGTVKTRLHRG 163 >UniRef50_B9TKF6 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKF6_RICCO Length = 90 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D+D + + + L + L ++ Y G+ +A ++ + + QKA + Sbjct: 24 TDEDILRVHEALEELAAVDQRLAQVVEMRYFGGLLETEIAEALGVTERTVQRDWQKARIL 83 Query: 106 I 106 + Sbjct: 84 L 84 >UniRef50_Q01WD0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01WD0_SOLUE Length = 196 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + + RL K + ++ Y G+ +A + S + + A+ + G L Sbjct: 127 LELDQALDRLAKIDPRQCRVVELRYFAGLDEEEIALQLGISGRTVKRDWAMAKAWLYGEL 186 >UniRef50_A4JX61 Putative uncharacterized protein n=1 Tax=Burkholderia phage phi644-2 RepID=A4JX61_9CAUD Length = 139 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 4/128 (3%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDI++ LE WG A G + + S K Q D + + Sbjct: 3 RDIEIRLENWGKAQRTGAGGGRAIGSAEG-RYVAPSIEKRVAQVTVIDLLDADEVEQAWR 61 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIG---KRLQKAEGIIEGMLMALDIRLE 118 K ++L +Y++ M + K + L A+ IE +L + + Sbjct: 62 KIMPFDKEVLRMHYILRMDPRVICRKLRIPHRPVSTFNMALSHAKREIEKVLDRMTEKRR 121 Query: 119 MDIVVNNS 126 + Sbjct: 122 AHVARQKE 129 >UniRef50_B0VKH6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii SDF RepID=B0VKH6_ACIBS Length = 165 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 4/88 (4%) Query: 24 WSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK----KNNSDLHDLLVDYYVVGM 79 + S L T + + Q D++A + + +K D + ++V+G Sbjct: 63 YMSDENLKDRLCTRRKGTCCQLNDNEARALHRLIIDIKLIEDHILQDWISAIWSHHVMGN 122 Query: 80 TFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +A + S I + L+ I+ Sbjct: 123 SLRDIAQSNDTSVNQIRQDLKCGLAYIK 150 >UniRef50_A6GD49 RNA polymerase sigma-70 factor, ECF subfamily protein n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6GD49_9DELT Length = 218 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 14/114 (12%) Query: 5 QMVLERWGAWAA----NNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 + VL +W AW E + S+A G+ T+ ++R Q +A L Sbjct: 84 RNVLRQW-AWERKRKRTREEGLGEVSVADLGVGVSTAFRQAREQKL---------LVAGL 133 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 ++ D +L YY G+ +AG +G + R++KA+ ++E L AL Sbjct: 134 QRLPIDAQVILELYYWEGLRAREIAGVFAIPEGTVRGRIRKAKVLLEAELDALT 187 >UniRef50_C1ABY3 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABY3_GEMAT Length = 200 Score = 40.3 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 49 DAMII--CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D ++ + L + L ++ Y G+T + A ++ + + KA G + Sbjct: 116 DGTLVALDDALDELARLAPRLAQVVECRYFGGLTELETAEALGVTERTVRRDWVKARGWL 175 Query: 107 EGML 110 G L Sbjct: 176 YGAL 179 >UniRef50_C1A7M9 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7M9_GEMAT Length = 193 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 24/59 (40%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 +D + + + +L++ + ++ + VG++ +A S + + A + Sbjct: 128 EDVLAVHDALEQLERLDPRQARIVELRFFVGLSLEEIAELLDISPATVSRDWAMARAWL 186 >UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D877_9CLOT Length = 924 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + ++ + RL + +V YY+ ++ +A CS+G I RL I+ Sbjct: 126 ETKRLVQEMIDRLPEEQRMA---VVLYYLENLSVGQIARLMECSEGTIKSRLNYGRKSIK 182 Query: 108 GMLMALD 114 ++AL+ Sbjct: 183 AQVLALE 189 >UniRef50_A3I0X2 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I0X2_9SPHI Length = 179 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 24/63 (38%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++ + + + RLK N ++ ++ G +A S + + + A+ + Sbjct: 115 EEVLHLNEALTRLKAINHRHCRVVEFHFFGGYKHEEIAQMMGVSIDTVRRDWRLAKAWLS 174 Query: 108 GML 110 L Sbjct: 175 KEL 177 >UniRef50_A2RP52 Putative uncharacterized protein ps612 n=2 Tax=Lactococcus lactis subsp. cremoris MG1363 RepID=A2RP52_LACLM Length = 100 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 22/46 (47%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKR 98 I +L + + ++V +++ + ++A + S+GYI K Sbjct: 40 INKVFEQLNAEHPREYKIIVRHHLKRTYYTTIAREQGVSEGYIRKL 85 >UniRef50_B4WLA9 Response regulator receiver domain protein n=2 Tax=Synechococcus sp. PCC 7335 RepID=B4WLA9_9SYNE Length = 216 Score = 39.9 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 5/38 (13%), Positives = 15/38 (39%) Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 + ++ Y G++ ++A + SD + + Sbjct: 149 DPKWLKVIELKYQEGLSDQAIARRLGVSDRTVRNYWTR 186 >UniRef50_UPI0001C37E82 ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E82 Length = 199 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 I ++ N + +V YY+ G+T +A + K ++ AE ++ +L Sbjct: 130 ISELYNAIESLNPMQKERIVLYYIKGLTQQQIAELQRVRLFTVQKSIKAAEKNLKKILEM 189 Query: 113 LD 114 Sbjct: 190 GG 191 >UniRef50_Q01ZV6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01ZV6_SOLUE Length = 205 Score = 39.2 bits (90), Expect = 0.038, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%) Query: 32 KGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCS 91 + + + D+ +++ + RL + L +++ Y G+T A S Sbjct: 116 RRVPLDDARDGFTSDPDEFLLLHQALDRLSDYDFSLANVIELRYFAGLTLEETAEIVGIS 175 Query: 92 DGYIGKRLQKAEGII 106 +R + AE + Sbjct: 176 VPTASRRQRMAEAWL 190 >UniRef50_D2LZ92 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ92_BACS4 Length = 180 Score = 39.2 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 43 PQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 Q DD M L+ + LL +Y+ G + LA + + I RL++A Sbjct: 97 EQSSDDVGYEKIEIMELLETLPEEQCQLLKLFYIEGFSIEDLASIYKVPENTIKTRLRRA 156 >UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechococcus sp. RS9916 RepID=Q05SP3_9SYNE Length = 248 Score = 39.2 bits (90), Expect = 0.047, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 2/84 (2%) Query: 19 HEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVG 78 + S A G LI C DD +L++ + +Y+ G Sbjct: 144 RSRDRYPSDADGDIPLIQELSDMTVSCDDDQQR--EWLQEQLEQLPQRARSCIERHYLAG 201 Query: 79 MTFMSLAGKHCCSDGYIGKRLQKA 102 + +A + CS I + L+ + Sbjct: 202 TSAKDIAKEDGCSCSEIRRILRSS 225 >UniRef50_UPI0001744968 hypothetical protein VspiD_19055 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744968 Length = 197 Score = 38.8 bits (89), Expect = 0.050, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 24/118 (20%) Query: 13 AWAANNHEDVTWSS-------IAAGFKGLITSKVKSR----PQCCDDDAM---------- 51 AW W S A + ++ + +++ Q DD A+ Sbjct: 69 AWLRLATSQSEWDSQAHFFGAAAEAMRRILVDRARTKSAVKRQLTDDPALAQSEEPAEGD 128 Query: 52 ---IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 +I + RL+K ++ +++ + G T +A S + ++ A+ + Sbjct: 129 HILLIHEALTRLEKEDAHAARIVMLKFFSGSTSEEIASMLGHSLRTVERQWTFAKARL 186 >UniRef50_B5JNN4 RNA polymerase sigma factor, TIGR02999 family n=2 Tax=Bacteria RepID=B5JNN4_9BACT Length = 223 Score = 38.8 bits (89), Expect = 0.051, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 26/56 (46%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++I + +LK+ + + ++V + + T +A S+ + +R A+ + Sbjct: 158 LLIDEALEQLKEKDPEQARVVVLKFFMSNTNAEVADMLRVSERTVERRWAYAKSWL 213 >UniRef50_A6WBB3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WBB3_KINRD Length = 270 Score = 38.8 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L++ + +LV Y T +A CS G + + + + +L Sbjct: 140 DEAVTALRQLSPRQRAVLVLRYYEDWTEAQIADALNCSTGTVKTQASRGLSRLRQLLDTS 199 Query: 114 D 114 Sbjct: 200 R 200 >UniRef50_B1YHB9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YHB9_EXIS2 Length = 181 Score = 38.8 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 8/100 (8%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 N + + + A I K SR + D + L + D+LV + Sbjct: 80 IRNCYRVLNQQTAVADLIEQIPVKESSREEHLD--------LIDALSHLRKEYRDVLVLF 131 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 Y + +A + + L++ ++ L LD Sbjct: 132 YFHDVPMKEIASFIGITLNTVKTYLRRGREELKKQLGGLD 171 >UniRef50_Q3SQV6 IstB-like ATP-binding protein n=3 Tax=cellular organisms RepID=Q3SQV6_NITWN Length = 356 Score = 38.8 bits (89), Expect = 0.059, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 10/54 (18%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 M++ +AR+++ ++++ G T ++A S + K L+ E Sbjct: 1 MLVVETIARIRR----------EHFIKGKTIRAIARDLKVSRNTVRKVLRSGET 44 >UniRef50_B1I489 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I489_DESAP Length = 186 Score = 38.4 bits (88), Expect = 0.079, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +I + L D+++ Y MT +A +G + RL+KA I+E +L Sbjct: 118 VISAAIDGLAAEYQ---DVILLKYQFEMTTKRIAETLNIPEGTVKTRLRKARAILESVL 173 >UniRef50_B6XKQ8 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XKQ8_9ENTR Length = 183 Score = 38.4 bits (88), Expect = 0.081, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 24/51 (47%) Query: 45 CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 C D + + ++ + ++ L ++L +Y+ ++ +LA + S I Sbjct: 97 CSDTEGGKMDKVISAVFAHDQGLLNVLKQHYIYKKSYYALALELHESKPSI 147 >UniRef50_UPI000178967B RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178967B Length = 216 Score = 38.0 bits (87), Expect = 0.092, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 +A+ + + L+ DL ++ +Y + +A +G + RL +A I+ Sbjct: 109 EAIELNEAVTHLED---DLRRVIQLHYYRDIPINHIAKMIGIPEGTVKSRLHRARAILAE 165 Query: 109 MLMALDIR-LEMDIVVNNSN 127 L + R + D +V + Sbjct: 166 RLESSTERNVSHDPIVCKES 185 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3W... 156 2e-37 UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus Re... 154 7e-37 UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=R... 154 1e-36 UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root Re... 151 7e-36 UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root... 150 2e-35 UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterob... 147 2e-34 UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax... 146 2e-34 UniRef50_Q7MZ44 Similarities with antitermination protein Q from... 143 2e-33 UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax... 142 3e-33 UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteria... 140 1e-32 UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifo... 140 1e-32 UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteria... 134 1e-30 UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia... 126 2e-28 UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersini... 121 6e-27 UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia... 120 2e-26 UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9Z... 116 2e-25 UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enteroba... 116 2e-25 UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escher... 115 5e-25 UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23... 112 4e-24 UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhab... 110 2e-23 UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mi... 109 2e-23 UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acineto... 102 4e-21 UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteur... 96 4e-19 UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseud... 93 3e-18 UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemoph... 92 4e-18 UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenoph... 92 7e-18 UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudom... 92 8e-18 UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudom... 91 1e-17 UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acineto... 90 2e-17 UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinob... 90 2e-17 UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root Re... 89 5e-17 UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellacea... 87 2e-16 UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseu... 86 3e-16 UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannh... 86 3e-16 UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magneto... 82 4e-15 UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Man... 82 5e-15 UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelo... 82 6e-15 UniRef50_Q0I4J0 Putative uncharacterized protein n=1 Tax=Haemoph... 81 1e-14 UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax... 81 1e-14 UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acineto... 80 3e-14 UniRef50_B3H0X4 Putative uncharacterized protein n=1 Tax=Actinob... 77 2e-13 UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acineto... 77 2e-13 UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella... 77 2e-13 UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella... 74 1e-12 UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candida... 68 8e-11 UniRef50_Q021X5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 67 2e-10 UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae Re... 65 7e-10 UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfo... 65 7e-10 UniRef50_D0S041 Putative uncharacterized protein n=1 Tax=Acineto... 64 2e-09 UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Ta... 61 1e-08 UniRef50_C4SVI1 ATP-dependent Zn protease n=1 Tax=Yersinia frede... 60 2e-08 UniRef50_A3ZZC0 Extracytoplasmic sigma factor ECF-like protein n... 60 3e-08 UniRef50_P44192 Uncharacterized protein HI1421 n=9 Tax=Haemophil... 58 8e-08 UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 50 2e-05 Sequences not found previously or not previously below threshold: UniRef50_B0VKH6 Putative uncharacterized protein n=1 Tax=Acineto... 54 1e-06 UniRef50_Q0C0A3 ECF sigma factor family protein n=1 Tax=Hyphomon... 53 4e-06 UniRef50_Q01WD0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 51 8e-06 UniRef50_C1A6L8 Sigma factor, ECF-like family protein n=1 Tax=Ge... 50 3e-05 UniRef50_Q024W7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 49 4e-05 UniRef50_B1ZSA5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 48 7e-05 UniRef50_B6XKQ8 Putative uncharacterized protein n=1 Tax=Provide... 48 8e-05 UniRef50_B9TKF6 Putative uncharacterized protein (Fragment) n=1 ... 48 1e-04 UniRef50_Q01ZV6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 48 1e-04 UniRef50_C1A7M9 Sigma factor, ECF-like family protein n=1 Tax=Ge... 48 1e-04 UniRef50_A3I0X2 DNA-directed RNA polymerase specialized sigma su... 47 2e-04 UniRef50_Q7UIV2 Similar to extracytoplasmic sigma factor ECF n=1... 47 2e-04 UniRef50_C1ABY3 Sigma factor, ECF-like family protein n=1 Tax=Ge... 46 2e-04 UniRef50_A9ENA8 ECF-family RNA polymerase sigma factor n=2 Tax=S... 46 2e-04 UniRef50_D0T5A5 Putative uncharacterized protein n=2 Tax=Acineto... 46 3e-04 UniRef50_Q0C1Q3 ECF sigma factor family protein n=1 Tax=Hyphomon... 46 3e-04 UniRef50_A6WBB3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 46 5e-04 UniRef50_UPI00016C3CD3 WD-40 repeat protein n=1 Tax=Gemmata obsc... 45 6e-04 UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobac... 45 6e-04 UniRef50_UPI0001744968 hypothetical protein VspiD_19055 n=1 Tax=... 45 8e-04 UniRef50_Q02A05 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 0.001 UniRef50_D0LUR6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 0.001 UniRef50_Q7UJC0 Putative uncharacterized protein n=1 Tax=Rhodopi... 44 0.001 UniRef50_C1AC15 Sigma factor, ECF-like family protein n=1 Tax=Ge... 44 0.001 UniRef50_B5JNN4 RNA polymerase sigma factor, TIGR02999 family n=... 44 0.002 UniRef50_Q2SCP5 DNA-directed RNA polymerase specialized sigma su... 43 0.002 UniRef50_D1BY52 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.002 UniRef50_D0LMI5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_Q01QI6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_B4WLA9 Response regulator receiver domain protein n=2 T... 43 0.003 UniRef50_Q15XA0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_Q029S3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_C6M4E4 Putative uncharacterized protein n=1 Tax=Neisser... 43 0.004 UniRef50_C8WRE2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.004 UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechoco... 43 0.004 UniRef50_C7QKN1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.004 UniRef50_B5RWL8 Extracytoplasmic function sigma factor (Iron-reg... 42 0.006 UniRef50_B1I489 RNA polymerase sigma factor n=1 Tax=Candidatus D... 42 0.006 UniRef50_Q2N5E1 Putative uncharacterized protein n=1 Tax=Erythro... 42 0.006 UniRef50_A6GD49 RNA polymerase sigma-70 factor, ECF subfamily pr... 42 0.007 UniRef50_B0VNN5 Putative uncharacterized protein n=5 Tax=Acineto... 41 0.008 UniRef50_A4JX61 Putative uncharacterized protein n=1 Tax=Burkhol... 41 0.008 UniRef50_UPI000178967B RNA polymerase, sigma-24 subunit, ECF sub... 41 0.008 UniRef50_B1YHB9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.009 UniRef50_A8M0I6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.009 UniRef50_B0C6N2 RNA polymerase sigma-24 subunit n=3 Tax=Cyanobac... 41 0.011 UniRef50_B1ZRZ7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.013 UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostri... 41 0.013 UniRef50_Q01VZ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.014 UniRef50_C6PXW0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.014 UniRef50_B2A477 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.014 UniRef50_D0LGY0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.017 UniRef50_C1ZAF4 RNA polymerase sigma factor, sigma-70 family n=1... 40 0.018 UniRef50_C5BZ96 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.019 UniRef50_A1SDN5 Sigma-70, region 4 type 2 n=1 Tax=Nocardioides s... 40 0.021 UniRef50_C8WJ47 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.023 UniRef50_B5G9W5 RNA polymerase ECF-subfamily sigma factor n=1 Ta... 40 0.023 UniRef50_C6RMQ2 Putative uncharacterized protein n=2 Tax=Acineto... 40 0.024 UniRef50_A8F7X8 Transcriptional regulator, DeoR family n=1 Tax=T... 40 0.025 UniRef50_C7MS70 RNA polymerase sigma factor, sigma-70 family/RNA... 40 0.034 UniRef50_UPI0001C37E82 ECF subfamily RNA polymerase sigma-24 fac... 40 0.035 UniRef50_Q38VH3 Putative uncharacterized protein n=1 Tax=Lactoba... 40 0.035 UniRef50_A3ZWG0 Probable ECF sigma factor AdsA n=1 Tax=Blastopir... 39 0.039 UniRef50_UPI0001695612 hypothetical protein Plarl_25483 n=1 Tax=... 39 0.039 UniRef50_D1CEP2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.041 UniRef50_Q01Y10 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.042 UniRef50_A7AH11 Putative uncharacterized protein n=1 Tax=Parabac... 39 0.042 UniRef50_Q3SQV6 IstB-like ATP-binding protein n=3 Tax=cellular o... 39 0.043 UniRef50_C7I208 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.043 UniRef50_Q2IJT3 Sigma-24 (FecI-like) n=3 Tax=Anaeromyxobacter Re... 39 0.044 UniRef50_D0CCC1 Putative uncharacterized protein n=1 Tax=Acineto... 39 0.045 UniRef50_A3ZWU1 RNA polymerase ECF-type sigma factor n=1 Tax=Bla... 39 0.046 UniRef50_A0LT00 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.046 UniRef50_C0ZBE3 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 39 0.047 UniRef50_A4E6Q4 RNA polymerase sigma factor n=1 Tax=Collinsella ... 39 0.048 UniRef50_Q7UMX2 Probable ECF sigma factor AdsA n=1 Tax=Rhodopire... 39 0.049 UniRef50_A8L8N4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.049 UniRef50_C0C2S2 RNA polymerase sigma factor n=1 Tax=Clostridium ... 39 0.050 UniRef50_Q893M5 RNA polymerase sigma factor n=2 Tax=Clostridium ... 39 0.054 UniRef50_A3TQ93 Putative RNA polymerase ECF-subfamily sigma fact... 39 0.054 UniRef50_C4XNK9 RNA polymerase ECF-type sigma factor n=2 Tax=Des... 39 0.054 UniRef50_A6G924 RNA polymerase sigma-70 factor n=6 Tax=Plesiocys... 39 0.056 UniRef50_C7PWP3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.056 UniRef50_A5I7E4 Putative glucitol operon regulator SorC n=10 Tax... 39 0.058 UniRef50_C7PZ57 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.061 UniRef50_A6TPP5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.061 UniRef50_A5VCC1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.061 UniRef50_A6NPX5 Putative uncharacterized protein n=1 Tax=Bactero... 38 0.063 UniRef50_D1VHA9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.063 UniRef50_A8SKN1 Putative uncharacterized protein n=1 Tax=Parvimo... 38 0.063 UniRef50_C4DIN0 RNA polymerase sigma factor n=1 Tax=Stackebrandt... 38 0.069 UniRef50_D0D7I5 Transcriptional regulator, DeoR family n=1 Tax=C... 38 0.072 UniRef50_Q65D80 Putative uncharacterized protein n=3 Tax=Bacillu... 38 0.075 UniRef50_C8WJQ5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.080 UniRef50_B2HVW8 Putative uncharacterized protein n=4 Tax=Acineto... 38 0.081 UniRef50_A1TEV0 RNA polymerase sigma factor sigK n=12 Tax=Actino... 38 0.082 UniRef50_C6J878 RNA polymerase sigma factor n=6 Tax=Clostridiale... 38 0.083 UniRef50_C1ZN14 RNA polymerase sigma factor, sigma-70 family n=1... 38 0.083 UniRef50_Q2SH89 DNA-directed RNA polymerase specialized sigma su... 38 0.085 UniRef50_D0M4A3 DNA-directed RNA polymerase specialized sigma su... 38 0.086 UniRef50_A9KJR1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.086 UniRef50_D1VK63 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.089 UniRef50_A6P2Y8 Putative uncharacterized protein n=1 Tax=Bactero... 38 0.095 UniRef50_D2LZ92 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.099 >UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3WTB9_ECOLX Length = 140 Score = 156 bits (394), Expect = 2e-37, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 74/126 (58%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLERWG WAA+ V + +AAGFK L+ + R +C D+D +II M+ L Sbjct: 1 MRNIQQVLERWGGWAASEGGSVYFPPVAAGFKNLLPATQSGRLKCSDNDGLIINSAMSCL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KK + L LL +YV M ++ K S ++ KRLQ AEG I+G L LD+ LEMD Sbjct: 61 KKKDPYLCTLLEWHYVQAMPVRAMGEKLGVSHTHVLKRLQAAEGFIDGCLAMLDVVLEMD 120 Query: 121 IVVNNS 126 V + Sbjct: 121 QSVQSK 126 >UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus RepID=B4EVI6_PROMH Length = 132 Score = 154 bits (390), Expect = 7e-37, Method: Composition-based stats. Identities = 61/127 (48%), Positives = 79/127 (62%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+Q VL RWGAW+AN + +SSIAAGFKGLI S +SR QC DDD + I + L Sbjct: 1 MRDMQEVLSRWGAWSANEGNSIDYSSIAAGFKGLIPSSRRSREQCSDDDGLKINKAVLHL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K NNS L L++ YYV S+A K S + KRLQ AEG IEG L +++L+MD Sbjct: 61 KVNNSYLFQLVIMYYVKNYPLRSMASKLGISHNEVAKRLQTAEGFIEGCLSVDNVKLDMD 120 Query: 121 IVVNNSN 127 ++ + Sbjct: 121 KIIRKHS 127 >UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=REGQ_BP933 Length = 144 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 98/126 (77%), Positives = 107/126 (84%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+ VLERWGAWAANN+EDVTWS IAAGFKGLI KVKSRPQCCDDDAM+ICGC+ARL Sbjct: 1 MRDIRQVLERWGAWAANNYEDVTWSPIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 +NN DLHDLLVDYYV+G TFM+LA KH CSD IGKRL KAEGI+EGMLM L +RLEMD Sbjct: 61 YRNNRDLHDLLVDYYVLGETFMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMD 120 Query: 121 IVVNNS 126 V Sbjct: 121 RYVERE 126 >UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root RepID=A4TNH3_YERPP Length = 159 Score = 151 bits (381), Expect = 7e-36, Method: Composition-based stats. Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 1/125 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VL RWG WA + +SSIAAGFKGL+ KS+ CCDDD +++ GC+ARL Sbjct: 19 MRDIQLVLARWGVWAR-YSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARL 77 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K+ + ++L++ +YV+ + ++A + + I +Q AEG I+G L L+++L MD Sbjct: 78 KQCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMD 137 Query: 121 IVVNN 125 + N Sbjct: 138 PFIEN 142 >UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root RepID=REGQ_BPAPS Length = 148 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 1/124 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ VLERWG WA +N+ + WS IAAGFKGL+ + RP C D+D II C+++L+ Sbjct: 3 RDIQQVLERWGTWARDNNTGIDWSPIAAGFKGLLPLRPSMRPSCSDEDGRIIDNCVSQLQ 62 Query: 62 KNN-SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + L++ YYV G + ++A + +G I +L AEG I+G L L +RL+MD Sbjct: 63 QVRQPEELSLIIAYYVKGYSKRAIARRRRVDEGLIRAKLLIAEGFIDGCLSLLAVRLDMD 122 Query: 121 IVVN 124 V Sbjct: 123 PEVK 126 >UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBF3_9ENTR Length = 131 Score = 147 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLERWG WAA V +SS AAGF GL + R CCDDD + I + +L Sbjct: 1 MRDIQLVLERWGGWAAEGKSKVGYSSTAAGFSGLFPESERVRLSCCDDDGIAIDAAIGKL 60 Query: 61 KKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 D DL+ +Y+ ++ ++A + CS+G I ++L AE I+ L+ ++ LEM Sbjct: 61 ISVGRKDEFDLIDKHYIRDISKSAIAREMKCSEGKIRQKLMIAETFIDACLIMANVTLEM 120 Query: 120 DIVVNNSN 127 D ++ Sbjct: 121 DEWCKKTS 128 >UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N2N8_PHOLL Length = 139 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 2/127 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLE WG W ++ V W IAAGFKGLI S RP CCD+D +II C+A+L Sbjct: 1 MRNIQQVLECWGGWV-DDATGVNWPPIAAGFKGLIASTRSLRPSCCDNDGLIIDACIAKL 59 Query: 61 KKNNS-DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + + ++L YY + ++ S+A D + RLQK E ++G L LDI+LEM Sbjct: 60 QTVDKSEEIEVLFMYYALRLSKRSIARLIKVPDIEVRSRLQKGESFVQGCLAMLDIKLEM 119 Query: 120 DIVVNNS 126 D + Sbjct: 120 DDEIQKH 126 >UniRef50_Q7MZ44 Similarities with antitermination protein Q from lamdoid prophage n=2 Tax=Enterobacteriaceae RepID=Q7MZ44_PHOLL Length = 143 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 1/123 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ +L WG W + + WSS+ AGFKGL++ ++ CCD+D +II GC+A+L+ Sbjct: 3 RDIQKILLHWGGWVVHGRSGLGWSSVTAGFKGLVSRTSITKLSCCDEDGLIIDGCIAKLR 62 Query: 62 KNN-SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 D + +Y GM+ S+ K+ ++ + KR+ AE I G L A D LE+D Sbjct: 63 NVQMEQECDFIECHYAKGMSKRSIGRKYKLNESEVRKRMAIAESFILGCLTASDETLELD 122 Query: 121 IVV 123 ++ Sbjct: 123 LLY 125 >UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax=Erwinia tasmaniensis RepID=B2VDR7_ERWT9 Length = 123 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 53/122 (43%), Positives = 82/122 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+++L RWG WAA + ++ +A+GF+GLIT SR QC DDD +II C++RL Sbjct: 1 MRDIKLLLRRWGGWAALGERRLGYAPVASGFRGLITHHASSRLQCSDDDGIIIDSCISRL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K + + HD+LV +Y+ ++ S+A + C+DG I +++Q AEG I G+L AL+ LE + Sbjct: 61 AKVSKEQHDILVAHYLYQISLRSIARRRRCADGSIRRKIQTAEGFICGVLTALESELECE 120 Query: 121 IV 122 + Sbjct: 121 NL 122 >UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=D1NX77_9ENTR Length = 156 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 2/124 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLE+W WA +N+ V +S IAAGFKGLI++K R C D+D +II +A+L Sbjct: 12 MRDIQLVLEKWAGWA-SNNPGVDYSHIAAGFKGLISNKEAPRLSCTDNDGIIIDSVIAKL 70 Query: 61 KKNNS-DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K + +L+V +Y+ G++ +A K S+G + + +Q AEG ++G L + + LEM Sbjct: 71 KAVRKDEELELIVMHYLYGVSKRGIAKKLKVSEGRVRQMMQVAEGFVDGCLAMIGVVLEM 130 Query: 120 DIVV 123 D V Sbjct: 131 DSEV 134 >UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifoliae RepID=D2TCJ1_ERWPY Length = 140 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 83/121 (68%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+I+++L+RWGAWA++ + ++S+A+GF+GLIT +R QC D D +I+ C++RL Sbjct: 19 MRNIKLLLQRWGAWASSGERRLGYASVASGFRGLITHHGGNRLQCSDGDGIILDSCISRL 78 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + HD+LV +Y+ ++ S+A + C+DG I K+LQ AEG + G+L AL+ LE + Sbjct: 79 AMESKEQHDILVAHYLYLISLRSIARRRRCADGTIRKKLQTAEGFVCGVLTALECELECE 138 Query: 121 I 121 Sbjct: 139 N 139 >UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=B5XSK3_KLEP3 Length = 114 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 48/114 (42%), Positives = 77/114 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+ +++RWGAWAA+++ V W IAAGFK L+ K+R QC DD+ ++I GC+ARL Sbjct: 1 MRDMYEIMDRWGAWAASDNSGVDWQPIAAGFKDLLPHGKKTRQQCDDDEGIMIDGCVARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++L++ ++V+GM+ ++A K CSDG I L+ A G +EG+L + Sbjct: 61 RMCKPEEYELIIAHFVIGMSLRAIAKKRRCSDGKIRGELRSAMGFVEGVLCIIH 114 >UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia RepID=C4SH18_YERMO Length = 124 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M DIQ VL RWG WA +N + + IA+GF+G ITS K C D+D + I + L Sbjct: 1 MADIQTVLTRWGVWARDN-AHLDYPHIASGFRG-ITSGGKQLESCSDNDGLAIDTTVGYL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K+ + DL++ +YV G + S+A C++ I ++LQ AE I+G I LEM Sbjct: 59 KRAAREKELDLIIRHYVYGQSKASIARLKKCNEREIRRQLQIAESFIDGCFTQSHITLEM 118 Query: 120 DI 121 Sbjct: 119 HK 120 >UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JRS6_YERPY Length = 141 Score = 121 bits (304), Expect = 6e-27, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 2 RDIQMVLERWGAWAANNH--EDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R++Q+V ERWG WAA+ V W +++ + L + +P C D+D + + C+A Sbjct: 3 RNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQLP--QASGKPSCTDEDGLTLDTCIAH 60 Query: 60 LKKNNSDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 + L++ Y+ G + +A + + LQ +E + G L+ L IRLE Sbjct: 61 MSTVFPQASLLILGQRYIGGHSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLE 120 Query: 119 MDIVV 123 MD V Sbjct: 121 MDPEV 125 >UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia RepID=C4T548_YERIN Length = 121 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M +IQ VL RWG WA N + + IA GFKG++ + K CCD+D ++I + L Sbjct: 1 MSNIQTVLARWGVWAREN-IHLDYPHIANGFKGMV-MRNKPAESCCDNDGLVIDKTIGNL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 ++ + + +L++ +YV G + S+A C++ I ++LQ AE IEG ++ D LEM Sbjct: 59 QRASREKELELILRHYVYGQSKASIARLKKCNEREIRRQLQLAESFIEGGIVQSDAALEM 118 Query: 120 DIV 122 + Sbjct: 119 HME 121 >UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9ZMR7_ECOLX Length = 162 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 7 VLERWGAWAANNHEDVTWSSIAAGFKGLI-TSKVKSRPQCCDDDAMIICGCMARLKKNNS 65 LE WGAW + + SS+ A F + +V +RP C DDD M+I + + + Sbjct: 19 WLELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDK 78 Query: 66 DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNN 125 +L+ YY G + ++A + S K L + G I+ R E+D ++N Sbjct: 79 KAFGILLSYYAHGSSKHAIAS-YYHSVARPRKMLCRGGGRIQK-PSLATCRREVDEILNA 136 Query: 126 S 126 S Sbjct: 137 S 137 >UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enterobacteriaceae RepID=D2U0V3_9ENTR Length = 142 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 2 RDIQMVLERWGAW-AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RDI+ +L WG W A N + V+W +A+GF + SR C D D ++I C++RL Sbjct: 3 RDIEKILLHWGGWCAGNPYASVSWLPVASGFNRFMP-FSTSRLSCSDADGLVIDVCVSRL 61 Query: 61 KKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + DYY+ G++ ++A K + + KR+Q AEG + G L LDI+L++ Sbjct: 62 NTVGMARELSYIEDYYIRGISKRAIARKFAVREDEVRKRMQIAEGFVLGCLETLDIQLDI 121 Query: 120 DIVVN 124 D + Sbjct: 122 DTLYK 126 >UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escherichia coli RepID=B7UQG2_ECO27 Length = 117 Score = 115 bits (287), Expect = 5e-25, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 64/110 (58%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI +L+ WGAW + + W IA +K ++ KSR QC +D+ II + RL++ Sbjct: 6 DICEILDDWGAWVVAGNSSIDWQEIADKYKNVVPHGKKSRRQCSNDEGRIIDISILRLER 65 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 ++L+V ++V+G++ ++A + CSDG I KRLQKA G + G + Sbjct: 66 YKQQEYELIVAHFVIGLSLRAIAKQQGCSDGTIRKRLQKALGFLTGYIAI 115 >UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23 n=4 Tax=Enterobacteriaceae RepID=D1P374_9ENTR Length = 176 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVK-SRPQCCDDDAMIICGCMARLKK 62 +Q L R+GAW + + SS+ A F + + RP C DDD ++I + ++ Sbjct: 21 LQNWLARFGAWVYSGRLEKRQSSMIAEFMATVERRSYPDRPTCSDDDGLLIHDVVDQIYH 80 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 ++ +L+ YV + ++A + + ++ + + R E++++ Sbjct: 81 LDTIAFKMLLSRYVYCASDRAIASSYYENC-EPRIMPRRNGLLRKRKPSISTCRREVEVI 139 Query: 123 VNNS 126 + ++ Sbjct: 140 LKST 143 >UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BH46_PHOAA Length = 174 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLI-TSKVKSRPQCCDDDAMIICGCMARLKK 62 I L WGAW + ++ F + S K+R C DDD M+I + + Sbjct: 28 IDSWLSLWGAWVYSGRIGKCQINMIYKFMVSVKPSNNKTRQMCNDDDGMLISRVVDSVMF 87 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 + + +L+ YY G + +S+A + K + ++ G ++ R E+D + Sbjct: 88 IDKKAYGILLSYYAHGASKLSIAS-YYHRVANPRKMMTRSGGRLKK-PSRGTCRREVDEI 145 Query: 123 VNNSN 127 +N S Sbjct: 146 LNAST 150 >UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mirabilis RepID=C2LFC9_PROMI Length = 127 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 2/126 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M+ I ++E WG+W NN+ + ++ + + +VK R C D +I+ CM++L Sbjct: 1 MQKISKLMEAWGSWVVNNNLYIN--TLTINKRENVPIRVKLRKACTDRQGIIVSVCMSKL 58 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KN+ ++LLVDYYV G TF+ LA H CSD YIGK+L+KAEGI+EGML+ ++ ++ Sbjct: 59 LKNHKKDYELLVDYYVFGQTFIQLAQAHRCSDTYIGKKLKKAEGIVEGMLIMAELIFIIE 118 Query: 121 IVVNNS 126 N++ Sbjct: 119 KNENST 124 >UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0S8S0_ACIJO Length = 136 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQCC-DDDAMI-ICGC 56 R +Q L +WG WA + N ++T++S G L + S Q DDDA++ I Sbjct: 12 RMMQNELAQWGKWARHASYNPSELTYTSPTYGLMRLKEGQKSSGIQVMLDDDALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + +L+ + DL+ + +Y+ G LA K I K L AE ++ L L + Sbjct: 72 VTQLRFSRPDLYQWIEFHYLKGYPIAVLASKTKVDRRNIDKFLLAAETWLDSRLDFLLCQ 131 Query: 117 LEMD 120 L+ D Sbjct: 132 LKKD 135 >UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteurellaceae RepID=B0QXB5_HAEPR Length = 121 Score = 95.8 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 3/117 (2%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRP--QCCDDDAMIICGCMARL 60 D++ VL WG + + ++ + + + K R + DD + + L Sbjct: 4 DVKRVLMLWGGYVRFTDC-KGYPTMQSFMRESPEMRTKRRYLARLDDDTLEKVDIQIRYL 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 +++ DLL YV G + K S G L+ AE +EG L+ I L Sbjct: 63 EQHFPKQFDLLFFRYVCGYEPNQVWRKLSLSKGSYENELRLAERFVEGALVGSQISL 119 >UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseudomonas phage PAJU2 RepID=B5WZY8_BPPAJ Length = 124 Score = 93.1 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 1/114 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RD + +L +WG W S + A + + + DDDAM+I G +AR+ Sbjct: 3 RDAEELLTQWGKWVWQETGVPRCGSPMLAIMRDNVAMEQCLSASISDDDAMLIDGIIARM 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++ + + YY MT + + + + L +E +L + Sbjct: 63 GRRDEEMANCVRVYYATEMTMQQVGKLLNLNRLKVRELLIAGRCYVEAVLDMRE 116 >UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemophilus influenzae RepID=Q4QKY2_HAEI8 Length = 121 Score = 92.3 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI++ R+G WA + + +I + P D+ AM I ++ Sbjct: 8 DIKLTARRYGKWAREG-VGINYPAIQPFLRKSTPDHG--IPMLDDETAMRIHDATLIMRN 64 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 +L+ + + YV ++ + + S I L A ++ +L Sbjct: 65 VTPELYQVFMLRYVSNLSQGDVGREMRVSVPTIKSYLYAAHQSLKLLLTQNKC 117 >UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2TX54_9ENTR Length = 115 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Query: 2 RDIQMVLERWGAWAAN--NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R ++ +LE WG W+ + E SSIA RP D++ I+ +A Sbjct: 3 RHVKDLLEAWGNWSMSRIGTEYKGMSSIA------PVKFDDDRPWLSDEEGEIVDKAVAG 56 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 LK+ + D ++++ +Y ++ +A YI + +AE I G + L Sbjct: 57 LKRYDIDGYNIICLHYQHHISCRMIAKNWKKRPDYITAYMGRAESYIAGTVHTL 110 >UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=B7V4N4_PSEA8 Length = 124 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 4 IQMVLERWGAWAANNHE-DVTWSSIAAGFKGLITSKVK---SRPQCCDDDAMIICGCMAR 59 ++ ++E++G W +++ S + A K ++ + P DD A+ + +AR Sbjct: 6 LEFLMEQYGLWVWSDNGTPRGSSPMLALMKRNPANEKRFAAVAPCISDDRALQVDRFLAR 65 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 L + D L+ Y++ GM++ + + S ++ + + + Sbjct: 66 LYDEDPDAIRSLILYFIHGMSYRDIQDRMGISYADARMLVRAGLSALLACFVMEE 120 >UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudomonas RepID=B1J5L6_PSEPW Length = 129 Score = 90.8 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 2/110 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRP-QCCDDDAMIICGCMARL 60 D + +LE+WG W + + S + A + + S+ +R DD A+II G +ARL Sbjct: 13 DTEYMLEQWGWWRMSEMGVPRYVSPLYALMRDNVPSEGGARQHVITDDLALIIDGAVARL 72 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 K N + D + YY M + + S+ + ++ I+ L Sbjct: 73 TKRNQQMGDFVWAYYGSKHPAMRVGREAGMSERKAREIIKAGVAWIDCAL 122 >UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AB307-0294 RepID=B7GXQ5_ACIB3 Length = 132 Score = 90.4 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQ--CCDDDAMIICGC 56 R +Q L +WG WA N N ++ + S + G L Q D+ + I Sbjct: 12 RMMQNELAQWGKWARNASFNPSELIYKSPSLGLMRLKEGFKSKGIQVTLNDEALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + +LK + DL+ + +Y+ G LA I K L AE ++ L Sbjct: 72 VMQLKLSRPDLYQWIEFHYLKGYPVAVLATHTKVDRRNIDKYLLAAETWLDSRL 125 >UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNN9_ACTSZ Length = 116 Score = 90.0 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 + + R+G W + + + G KG +K P DD+ M+I + +K+ Sbjct: 2 NFKAKFIRFGYWGNS-RLETDYPVATVGIKGADRTKPYLDP-LSDDEGMLIDKGLLLMKQ 59 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 N D + + YV + S + L +AE + G L+ ++ Sbjct: 60 INFDQFHVFMLTYVKRYDRADICHFKNISLKHYYNLLHEAESFLIGYLLRGEVVF 114 >UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root RepID=A5UER2_HAEIG Length = 122 Score = 88.9 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 2/115 (1%) Query: 4 IQMVLERWGA-WAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 ++ VLE+WG W + + S L T + DD+ + I + L + Sbjct: 5 VERVLEKWGNCWGR-DRIGTEYPSTTISIPVLPTVRKAHIRFLTDDECLKIEEQIMNLHE 63 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 ++ + +L+ YV + S + + K ++G I+ Sbjct: 64 DSLLQYQILMALYVQQANERDICTALHISPACMYRERAKGVRFLKGAFTGAKIKF 118 >UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellaceae RepID=C6AM41_AGGAN Length = 168 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 4/116 (3%) Query: 11 WGAWAANNHEDV-TWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR-LKKNNSDLH 68 WGAW D ++ IA K +I + S P C D+ M+I + + KN+ LH Sbjct: 24 WGAWIRLGRLDKPEFNIIAKLMKSVIPADP-SEPVCSDEVGMMISELIEQFFFKNDRTLH 82 Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVN 124 ++ YYV T +A K + G + + + I + ++ ++ + Sbjct: 83 YIVFSYYVNKNTINRIAVKLRENCGEMKMQPCAGKSDI-RIPSLKTVKRNVEKELK 137 >UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseudomonas putida KT2440 RepID=Q88ML3_PSEPK Length = 113 Score = 86.2 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 17/123 (13%) Query: 1 MRDIQM----VLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGC 56 M +++ +LE WG W +S P DDDA+ I Sbjct: 1 MSNVEKSAEYLLEHWGRWVVLGSGVSCCAS---------RENTILDPMITDDDALFIDRL 51 Query: 57 MARLKKNNSDLHDLLVDYYVVG-MTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 + RL K + +++ YY + + K + + + I+G A+DI Sbjct: 52 VGRLSKRYPECGQVIIKYYTSRDTSLRDVGKKLGFGEEKTRQLWKAGVAWIDG---AIDI 108 Query: 116 RLE 118 R E Sbjct: 109 RRE 111 >UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannheimia haemolytica RepID=A7JW96_PASHA Length = 157 Score = 85.8 bits (211), Expect = 3e-16, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 2/118 (1%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVK--SRPQCCDDDAMIICGCMARLK 61 I+ +L WGAW + + ++ SR C D +I + Sbjct: 19 IEELLRLWGAWEFGGLDLESRVNMIYRLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVT 78 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K + L D+L Y G + +A + D K + E I + A I ++ Sbjct: 79 KRDVMLADILKQKYWFGRSERQIAIYYQLRDSEGRKERRWQEIIQDKCKKAERIIADI 136 >UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8A2_MAGSM Length = 144 Score = 82.3 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 2/107 (1%) Query: 6 MVLERWGAWAANNHEDVTWSSIAAGFKGLITSK--VKSRPQCCDDDAMIICGCMARLKKN 63 +L+ W W+ + + + + + ++++ ++++ K Sbjct: 17 ELLQEWARWSRSGMSSQNPITSTQLLMRRAAGHVGRSLKYENSEQQSLLVDCVISKMAKI 76 Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 LL ++Y+ +A + S G + +AEG+ EG Sbjct: 77 FPHEVTLLQEFYLGKKGMRIIARERVFSYGKVQTLRSRAEGLFEGWF 123 >UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Mannheimia haemolytica serotype A2 RepID=UPI0001BCFD6E Length = 146 Score = 82.3 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 28/142 (19%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR--PQCCDDDAMIICGCMARL 60 DI+ VL WG++ + ++ A + + K R P+ DD + + +L Sbjct: 4 DIKGVLNLWGSFVRFTDC-KGYPTMQAFMRESPQEREKQRYLPRLDDDTLAKVDRQIRKL 62 Query: 61 --------------KKNNSD-----------LHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 K N+ +L YV G+ + K S G Sbjct: 63 DPAGKAKAYLANLAKPNDKREELESLESDELQFAILYLRYVAGLENKPIWQKLSLSKGAF 122 Query: 96 GKRLQKAEGIIEGMLMALDIRL 117 L+ AE +EG+L+ +IRL Sbjct: 123 ENELRLAERFVEGVLIGSEIRL 144 >UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW5_DICNV Length = 118 Score = 81.9 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKN 63 I+ +L WG W+ + A F + D+ I + L+ N Sbjct: 3 IEELLVAWGEWSRKDVLPARPRCFIAAFCRRSARDADDSVELDDEACEQINEGLMVLRGN 62 Query: 64 NSDLHDLLVDYYVVG-MTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + +HD+L+ Y+ ++A +H S+ + ++ +EG L Sbjct: 63 HQRIHDVLISRYLYNEYNDKAVAKRHGISESTVKDYRRRGHLFLEGWLC 111 >UniRef50_Q0I4J0 Putative uncharacterized protein n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4J0_HAES1 Length = 134 Score = 80.8 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 17/129 (13%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQ--CCDDDAMIICGCMA 58 + D + +WG WA + SI+ + +D AM C+ Sbjct: 5 LNDFKKKCRQWGYWA-TPRIGTEYPSISPSIP--VPQDKYCGKVDPINEDLAMEFERCVL 61 Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMS------------LAGKHCCSDGYIGKRLQKAEGII 106 ++K +L+D+ + YV + + + S+ K L AE + Sbjct: 62 IMQKVTRELYDVFMVTYVYRLPLRNEYDRRRILVRKGICETLDISETTYKKYLYTAEISL 121 Query: 107 EGMLMALDI 115 + ML Sbjct: 122 KLMLSQNRC 130 >UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI000045D91D Length = 125 Score = 80.8 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTWSS-IAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 DI L RWG A + + A+ + K DDD + + G LK Sbjct: 5 DIDATLFRWGRHAKS-RIGTEFPCKCASWVADSQSKKHYHIDLTTDDDLIEMDGITKNLK 63 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + + +L+ YV+ L S + + L A+ + G ++A ++ Sbjct: 64 QYDEQAYYVLLGNYVMRYDEKQLVKDLDISKTTLYRSLTIAKSFVFGAVIAKNLS 118 >UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A7FBC6_ACIBT Length = 166 Score = 79.6 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query: 4 IQMVLERWGAWAANNHEDVT---WSSIAAGFKGLI----TSKVKSRPQC--CDDDAMIIC 54 I+ LE++GAW ++ + +++ + ++ +S PQC D+A + Sbjct: 19 IENWLEQFGAWINEDNAETYLGTRNTLTYLIDSVEGVKRDARKRSLPQCKISTDEARAVS 78 Query: 55 GCMARLKKNN----SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G + L+ N + D +V YYV G++ ++A CS + + L+ I G Sbjct: 79 GLLRDLRMNPNPTLQEWLDFVVLYYVHGLSEETIADISKCSRNAVRQDLKCGIAYIVGQR 138 Query: 111 MALDIRL 117 L +L Sbjct: 139 NTLRSKL 145 >UniRef50_B3H0X4 Putative uncharacterized protein n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H0X4_ACTP7 Length = 161 Score = 77.3 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 6/105 (5%) Query: 5 QMVLERWGAWAANNHEDVTWSSIAAGFKGLIT--SKVKSRPQCCDDDAMIICGCMARLKK 62 + V + +GAW + + ++ F + K+ RP C D M+I + K Sbjct: 20 EEVFKMYGAWEFSGLDRDKRVNMIYKFMRSVEAIDKLGMRPVCNDQLGMLINEILTVRTK 79 Query: 63 NNSD----LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + + D Y G + +A D + E Sbjct: 80 HAKGDTVLMRDFFKQKYWFGRSERQIAMYMQKRDDEGKCLRRWQE 124 >UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acinetobacter baumannii RepID=B0VTT6_ACIBS Length = 145 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 12/129 (9%) Query: 6 MVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRP-----QCCDDDAMIICGCMARL 60 LE++G W + V+ + +A T++++S + D +A+ + +A + Sbjct: 19 QWLEQYGLWVRSTKSKVSANPLACLIDQNDTTRIRSSKVSMPCEIEDYEAVEVSKLLAAM 78 Query: 61 KKNNSDLHD----LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + LL+ Y ++ ++A H + K + K ++G + AL Sbjct: 79 HNDEREFLQERAWLLILKYENDWSYRTIANTHGVGKDTVRKEIDKGLAYLDGKIEALA-- 136 Query: 117 LEMDIVVNN 125 E D + Sbjct: 137 -EFDNEKKS 144 >UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPC2_HAHCH Length = 118 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 43/111 (38%), Gaps = 4/111 (3%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M + +LE+W W+ + + +SS + + P D +A + +++L Sbjct: 5 MNETPWLLEQWAQWSKMD-ASLGYSSSTPFSR--LNGSATRSPVITDQEAAAVDLAVSKL 61 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKH-CCSDGYIGKRLQKAEGIIEGML 110 + + ++ +++ YY+ G + + ++ I+ L Sbjct: 62 RTRDEEMGEVVRLYYMAGENLSYVVRRMPKLDRRKADLLVKSGVAWIDATL 112 >UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SI66_HAHCH Length = 128 Score = 73.8 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 5/107 (4%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKN 63 + L R+G W + + DD A+I+ +A L + Sbjct: 10 TRDWLVRYGRWVRAGGVLPRFERV-----ETCLDDYDGSELLTDDQALIVDKALALLSRV 64 Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + Y+ +A S G + L+ E I+ G+L Sbjct: 65 QPFEGKAIKWAYIDRREIRVIARDLGRSYGAARELLRMGECIMSGLL 111 >UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W3_HAMD5 Length = 92 Score = 68.1 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 44 QCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 D++A I+ +ARLK +S +D++V Y ++ ++ I L ++E Sbjct: 1 MLPDNEAQIVDRAVARLKHFDSLGYDIIVACYRGKVSCRAIGRALKRDHKSISGYLTRSE 60 Query: 104 GIIEGMLMAL 113 I G + AL Sbjct: 61 AYIAGQVDAL 70 >UniRef50_Q021X5 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021X5_SOLUE Length = 196 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 5/101 (4%) Query: 18 NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVV 77 S+IA + P D + + + RL + + ++ +Y Sbjct: 98 GAAKRGGSAIAVTLDETVVPSSGRGP-----DVLELDEALDRLAQRDERKAKVIELHYFG 152 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 GMT +AG + + + L+ E + L D Sbjct: 153 GMTREEIAGAMNLTVATVKRDLRLGEAWLRCHLSGGDSGRN 193 >UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae RepID=B7UQ12_ECO27 Length = 180 Score = 65.0 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 41/144 (28%) Query: 4 IQMVLERWGAWAANN------------------------------HEDVTWSSIAAGFKG 33 IQ L WG W+ + + A + Sbjct: 24 IQGKLRMWGRWSYIGGGKPGNMFNQLLASKKLTKTAVNEALRRIRESGIDKPELEAFLRE 83 Query: 34 LITSKVKSRPQ-CCDDDAMIICGCMARLKKNNSDLHDLLVDYYV-VGMTFMSLAGKHCCS 91 +I + KS C D +A+ I G +++ L D+L Y GM+ +A Sbjct: 84 MIAGRQKSWLSHCTDAEALRIDGVISKALARYPGLIDILRQRYEGRGMSKRKMAELLNEV 143 Query: 92 DGY---------IGKRLQKAEGII 106 I L+ AE I+ Sbjct: 144 HPEWCYATCRNRIDMWLRIAEFIL 167 >UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALN5_DESPS Length = 126 Score = 65.0 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 2/112 (1%) Query: 1 MRDIQMVLERWGAWAA-NNHEDVTWSSIAAGFKGLITSKVKSRP-QCCDDDAMIICGCMA 58 M I L + W + + + +A + +P + D++AM+I +A Sbjct: 1 MEFISEKLTNYALWLRVSPVPHLGYGRLAISCCWQDYPAYELQPVEISDEEAMLIDTAIA 60 Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 RL++ + + + L+ YY+ +A + + + + E + L Sbjct: 61 RLRQRKASVAEALMVYYLSKENTSYVARELGMDRRKVTQLVSMGESWVAAWL 112 >UniRef50_D0S041 Putative uncharacterized protein n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S041_ACICA Length = 170 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 4/88 (4%) Query: 24 WSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNN----SDLHDLLVDYYVVGM 79 + S L T + + Q D++A I + L+ + + + +YV+G Sbjct: 61 YMSDENLKDRLCTRRKGTCCQLNDNEARAIHRLILDLQSIDDEVLQEWIGAIWWHYVMGE 120 Query: 80 TFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +A I + ++ I+ Sbjct: 121 SIRDIAKSSDTYGSQIQQDIKCGLAFIK 148 >UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N1K7_PHOLL Length = 103 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M+I + + + +L+ YV ++ ++A KH + +++ + + Sbjct: 1 MLIARVVDHIYHIDRVAFGMLLSRYVYCVSDRAIA-KHYHATVQPRIMIRRNGMLRKRKP 59 Query: 111 MALDIRLEMDIVVNNS 126 R E++ ++ + Sbjct: 60 SMSTCRREVEEILRAT 75 >UniRef50_C4SVI1 ATP-dependent Zn protease n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SVI1_YERFR Length = 160 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 15/79 (18%) Query: 45 CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 C DD+ +++ + + ++ L +L +Y+ ++A + + Sbjct: 68 CTDDEGLLMDSVVGLVLQSTPGLIGILQQHYIYKKKRYTMAEEMQEAHPE---------- 117 Query: 105 IIEGMLMALDIRLEMDIVV 123 L R +D + Sbjct: 118 -----LSISTCRRRIDAWI 131 >UniRef50_A3ZZC0 Extracytoplasmic sigma factor ECF-like protein n=6 Tax=Planctomycetaceae RepID=A3ZZC0_9PLAN Length = 189 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 10/93 (10%) Query: 32 KGLITSKVKSRPQCCDDDAMI----------ICGCMARLKKNNSDLHDLLVDYYVVGMTF 81 K L + R + DDDA+I + +++L +L L+ Y G++ Sbjct: 95 KSLKRGGDRDRYEILDDDAVIDSQNVDELLDLDAALSKLANEEPELAKLVELRYFAGLSV 154 Query: 82 MSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 A S + + A + L + Sbjct: 155 DQSAQVLGVSPRTVKRNWAFARAWLGRELHLEE 187 >UniRef50_P44192 Uncharacterized protein HI1421 n=9 Tax=Haemophilus influenzae RepID=Y1421_HAEIN Length = 92 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 36 TSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 K + RP D+ M I G + ++K +L+D+ V Y+ + S Sbjct: 8 AEKYRMRP-ISDELGMEIDGYLGVIRKVTPELYDVFVLTYIKRWEKQGIWRYLHISRREY 66 Query: 96 GKRLQK 101 RL+ Sbjct: 67 FNRLKT 72 >UniRef50_B0VKH6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii SDF RepID=B0VKH6_ACIBS Length = 165 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 4/88 (4%) Query: 24 WSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK----KNNSDLHDLLVDYYVVGM 79 + S L T + + Q D++A + + +K D + ++V+G Sbjct: 63 YMSDENLKDRLCTRRKGTCCQLNDNEARALHRLIIDIKLIEDHILQDWISAIWSHHVMGN 122 Query: 80 TFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +A + S I + L+ I+ Sbjct: 123 SLRDIAQSNDTSVNQIRQDLKCGLAYIK 150 >UniRef50_Q0C0A3 ECF sigma factor family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C0A3_HYPNA Length = 241 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D+ + + + RL K N L +++ + G T + A +D I + KA Sbjct: 158 SDERLLELDDALTRLSKLNPRLAEVVELRFFGGYTEVQAADILGVTDRTIRRDWIKARAW 217 Query: 106 IEGMLMALDIR 116 + L + I Sbjct: 218 LFRELSGVAIE 228 >UniRef50_Q01WD0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01WD0_SOLUE Length = 196 Score = 51.5 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + + RL K + ++ Y G+ +A + S + + A+ + G L Sbjct: 127 LELDQALDRLAKIDPRQCRVVELRYFAGLDEEEIALQLGISGRTVKRDWAMAKAWLYGEL 186 >UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0ATZ3_SYNWW Length = 206 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 48 DDAMIICGCMARLK------KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 +D +++ + L+ K + D+++ YY + S+A + I + Q+ Sbjct: 129 EDKLLLSSYIPALQEAVLAAKIKPEEWDIIIAYYAYNESDRSIAVRLKKPINTIKSKRQR 188 Query: 102 AEGIIEGM 109 A ++ Sbjct: 189 AMARLQKK 196 >UniRef50_C1A6L8 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6L8_GEMAT Length = 202 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 DD + + + RL + L+ Y G+ + A S+ + + A + Sbjct: 136 DDVIALHEALDRLALLSPRQAQLVESRYFGGLDVQAAAELLGISESTALRDWRLARAWLA 195 Query: 108 GMLMALD 114 L A Sbjct: 196 RELQASR 202 >UniRef50_Q024W7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024W7_SOLUE Length = 161 Score = 49.2 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 10/94 (10%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMI----------ICGCMARLKKNNSDLHDLLVDYYVV 77 AA +G D A++ + + K ++ Y Sbjct: 57 AARLRGSRRQGGIPIKVNLDQSALLSPAPDRALLALDEALTAFSKLAPRQAKVVELRYFG 116 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 G+T + S + Q A+ + L Sbjct: 117 GLTDEEIVSALNISPRTARRDWQFAKAWLLRELS 150 >UniRef50_B1ZSA5 RNA polymerase, sigma-24 subunit, ECF subfamily n=10 Tax=Bacteria RepID=B1ZSA5_OPITP Length = 193 Score = 48.4 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%) Query: 29 AGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKH 88 A T + P+ D++ ++I + L ++S +L+ Y G+T A Sbjct: 105 AKVSASATGFDVAAPEADDEELLLINEALEALAAHDSRKAELVKQKYFAGLTLEEAAEVL 164 Query: 89 CCSDGYIGKRLQKAEGII 106 S + A + Sbjct: 165 GISVRTAKRDWAYARAWL 182 >UniRef50_B6XKQ8 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XKQ8_9ENTR Length = 183 Score = 48.0 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 45 CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 C D + + ++ + ++ L ++L +Y+ ++ +LA + S I L Sbjct: 97 CSDTEGGKMDKVISAVFAHDQGLLNVLKQHYIYKKSYYALALELHESKPSI--SLSTCRR 154 Query: 105 IIEGMLMALD 114 I+ L + Sbjct: 155 RIKAWLSIAE 164 >UniRef50_B9TKF6 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKF6_RICCO Length = 90 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D+D + + + L + L ++ Y G+ +A ++ + + QKA + Sbjct: 24 TDEDILRVHEALEELAAVDQRLAQVVEMRYFGGLLETEIAEALGVTERTVQRDWQKARIL 83 Query: 106 I 106 + Sbjct: 84 L 84 >UniRef50_Q01ZV6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01ZV6_SOLUE Length = 205 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 29/83 (34%) Query: 32 KGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCS 91 + + + D+ +++ + RL + L +++ Y G+T A S Sbjct: 116 RRVPLDDARDGFTSDPDEFLLLHQALDRLSDYDFSLANVIELRYFAGLTLEETAEIVGIS 175 Query: 92 DGYIGKRLQKAEGIIEGMLMALD 114 +R + AE + + Sbjct: 176 VPTASRRQRMAEAWLSREISVKT 198 >UniRef50_C1A7M9 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7M9_GEMAT Length = 193 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 25/63 (39%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D + + + +L++ + ++ + VG++ +A S + + A + Sbjct: 128 EDVLAVHDALEQLERLDPRQARIVELRFFVGLSLEEIAELLDISPATVSRDWAMARAWLR 187 Query: 108 GML 110 L Sbjct: 188 VQL 190 >UniRef50_A3I0X2 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I0X2_9SPHI Length = 179 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 24/63 (38%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++ + + + RLK N ++ ++ G +A S + + + A+ + Sbjct: 115 EEVLHLNEALTRLKAINHRHCRVVEFHFFGGYKHEEIAQMMGVSIDTVRRDWRLAKAWLS 174 Query: 108 GML 110 L Sbjct: 175 KEL 177 >UniRef50_Q7UIV2 Similar to extracytoplasmic sigma factor ECF n=1 Tax=Rhodopirellula baltica RepID=Q7UIV2_RHOBA Length = 188 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 10/89 (11%) Query: 32 KGLITSKVKSRPQCCDDDAMI----------ICGCMARLKKNNSDLHDLLVDYYVVGMTF 81 + L + R + +DDA+I + + + +++ ++ L+ Y G++ Sbjct: 94 QSLKRGGDRKRFEIAEDDAIIHFDNAEELLDLNDALTKFERSEPEIAKLVELRYFAGLSV 153 Query: 82 MSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 A S + + A + L Sbjct: 154 DESAEALGISPRTVKRNWAFARAWLGREL 182 >UniRef50_C1ABY3 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABY3_GEMAT Length = 200 Score = 46.5 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D + + + L + L ++ Y G+T + A ++ + + KA G + Sbjct: 116 DGTLVALDDALDELARLAPRLAQVVECRYFGGLTELETAEALGVTERTVRRDWVKARGWL 175 Query: 107 EGML 110 G L Sbjct: 176 YGAL 179 >UniRef50_A9ENA8 ECF-family RNA polymerase sigma factor n=2 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ENA8_SORC5 Length = 185 Score = 46.5 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D + + + RL+ + ++V Y G++ A + + + + A + Sbjct: 118 EDVLAVDAALKRLEGAHPRKAQVVVMRYFGGLSEEESAEALGVTARTVERDWRFARAFLH 177 Query: 108 GMLMALD 114 L D Sbjct: 178 EALEQKD 184 >UniRef50_D0T5A5 Putative uncharacterized protein n=2 Tax=Acinetobacter radioresistens RepID=D0T5A5_ACIRA Length = 159 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 24/129 (18%) Query: 4 IQMVLERWGAWAANNHEDVT--WSSI-------------AAGFK-----GLITSKVKSRP 43 + ++GAW N E + S+ A + + Sbjct: 19 TEDWFRQFGAWMNGNTEVKRLVYKSLPTRKLNQKQREQLIAKYMNDESFREPVVRRGVTC 78 Query: 44 QCCDDDAMIICGCMARLKKNN----SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRL 99 Q D++A + +++ + ++ + Y+ +A S I + + Sbjct: 79 QITDNEARAFQRIILDIRQIESEPLQEWMGVIWEVYIENRRLREVATLFDTSTIQIRQDM 138 Query: 100 QKAEGIIEG 108 + A IEG Sbjct: 139 KCALAFIEG 147 >UniRef50_Q0C1Q3 ECF sigma factor family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1Q3_HYPNA Length = 194 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 ++ + RL + + +++ Y GMT +A S+ I + + A + L Sbjct: 125 VLEKALIRLNVIDEEKAEIVELRYFGGMTLEEIAEIRGVSEATIKRNWRAARAWLLDCL 183 >UniRef50_A6WBB3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WBB3_KINRD Length = 270 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L++ + +LV Y T +A CS G + + + + +L Sbjct: 140 DEAVTALRQLSPRQRAVLVLRYYEDWTEAQIADALNCSTGTVKTQASRGLSRLRQLLDTS 199 Query: 114 D 114 Sbjct: 200 R 200 >UniRef50_UPI00016C3CD3 WD-40 repeat protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3CD3 Length = 1112 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 10/97 (10%) Query: 20 EDVTWSSIAAGFKGLITSKVKSRPQCCDDDA-----MIICGCMARLKKNNSDLHDL-LVD 73 S A K ++ + P DD I +ARL +++ L L+ Sbjct: 97 AGKIRRSAARRQKRESANRERPAPSPADDTLWAELRERIDAELARL----PEVYRLPLLL 152 Query: 74 YYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 YV G+++ A + CS G + RL++ + G L Sbjct: 153 CYVQGLSYADAARRLGCSPGALRGRLERGREQLRGRL 189 >UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobacterium nucleatum subsp. polymorphum ATCC 10953 RepID=A5TWC9_FUSNP Length = 150 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGK 97 ++ + LK + ++++ YY+ GM +A K + + K Sbjct: 82 LVDSGIGYLKDCHFKHYEIIELYYIKGMKLKQIASKLGINPATVSK 127 >UniRef50_UPI0001744968 hypothetical protein VspiD_19055 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744968 Length = 197 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 24/118 (20%) Query: 13 AWAANNHEDVTWSSIAAGF-------KGLITSKVKSR----PQCCDDDAM---------- 51 AW W S A F + ++ + +++ Q DD A+ Sbjct: 69 AWLRLATSQSEWDSQAHFFGAAAEAMRRILVDRARTKSAVKRQLTDDPALAQSEEPAEGD 128 Query: 52 ---IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 +I + RL+K ++ +++ + G T +A S + ++ A+ + Sbjct: 129 HILLIHEALTRLEKEDAHAARIVMLKFFSGSTSEEIASMLGHSLRTVERQWTFAKARL 186 >UniRef50_Q02A05 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Bacteria RepID=Q02A05_SOLUE Length = 194 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 22/68 (32%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D + + + L + ++ Y G++ A S + + A+ + Sbjct: 127 DLLELNRSLELLTSLDPQQGRVVELRYFGGLSVDETAEVLGISPATVKREWSTAKLWLLQ 186 Query: 109 MLMALDIR 116 + I+ Sbjct: 187 HMEGSSIQ 194 >UniRef50_D0LUR6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUR6_HALO1 Length = 171 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 25/68 (36%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D +++ + RL+ + ++ G+T +A S + ++A + Sbjct: 104 DLLVLDEVLTRLEALDPRQARIVEMRVFGGLTVSEVARTLGVSTRTVEYDWRQARAWMRL 163 Query: 109 MLMALDIR 116 L D+ Sbjct: 164 ELQRSDVS 171 >UniRef50_Q7UJC0 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7UJC0_RHOBA Length = 216 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 22/64 (34%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 DDD + + + +L + ++ + G+ +A + + K A + Sbjct: 119 DDDVVALDELLLQLASLSPRQARVVELRFFGGLGMKEIAAELNLGLRTVEKEWAMARAWM 178 Query: 107 EGML 110 L Sbjct: 179 RREL 182 >UniRef50_C1AC15 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AC15_GEMAT Length = 190 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 29 AGFKGLITSKVKSRPQCCDDDA-----MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMS 83 A +G + +V Q DDA + I + L ++ L ++ + G++ Sbjct: 98 ALKRGGVRQRVSLDEQAVADDAEPEQLLEIDDALHHLATIDARLARVVELRFFGGLSEEE 157 Query: 84 LAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 +A + + + KA ++ L D Sbjct: 158 IAEALDVTVRTVRRDWVKARMLLRQSLGVAD 188 >UniRef50_B5JNN4 RNA polymerase sigma factor, TIGR02999 family n=2 Tax=Bacteria RepID=B5JNN4_9BACT Length = 223 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 26/56 (46%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++I + +LK+ + + ++V + + T +A S+ + +R A+ + Sbjct: 158 LLIDEALEQLKEKDPEQARVVVLKFFMSNTNAEVADMLRVSERTVERRWAYAKSWL 213 >UniRef50_Q2SCP5 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCP5_HAHCH Length = 185 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%) Query: 44 QCCDD----DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRL 99 Q CDD D + + + +L + ++ + GMT +A S + + L Sbjct: 113 QICDDGSQPDLLDLEDILQKLSNVDERKARIVEMSFFGGMTQEEIAEYLQVSLSTVERDL 172 Query: 100 QKAEGIIEGMLMA 112 + A+ + L Sbjct: 173 RFAKAWLVKELKI 185 >UniRef50_D1BY52 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BY52_XYLCX Length = 172 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 9/113 (7%) Query: 13 AWAAN------NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSD 66 AW +E + A L + + DD + + M L + + Sbjct: 55 AWVYATLRNVVGNEYRRRGRVTALVDKLGPMQDLAAAPVAVDDQLTVHAAMEALAEPDR- 113 Query: 67 LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 DLL Y ++ +A C+ + RL +A G ++ L D E+ Sbjct: 114 --DLLRMAYWEDLSAPEIAQILGCTPTAVRIRLTRARGRLKKQLSIDDPEEEV 164 >UniRef50_D0LMI5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMI5_HALO1 Length = 179 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D +++ ++RL + ++ GMT +A + + K ++A I Sbjct: 112 DLLVLDDILSRLDELEPRQARIVELRVFAGMTVPEVARVLGVAVTTVEKAWRRARAWIRM 171 Query: 109 MLMALD 114 L D Sbjct: 172 ELHGAD 177 >UniRef50_Q01QI6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QI6_SOLUE Length = 190 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (36%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 D +I+ + RL + + L+ Y G+T A S + + A ++ Sbjct: 123 DRILIVDEALNRLSEMDPRQGRLVELMYFGGLTAEEAAEATGVSVRTVKRDWSSARAWLQ 182 Query: 108 GML 110 L Sbjct: 183 SQL 185 >UniRef50_B4WLA9 Response regulator receiver domain protein n=2 Tax=Synechococcus sp. PCC 7335 RepID=B4WLA9_9SYNE Length = 216 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 5/38 (13%), Positives = 15/38 (39%) Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 + ++ Y G++ ++A + SD + + Sbjct: 149 DPKWLKVIELKYQEGLSDQAIARRLGVSDRTVRNYWTR 186 >UniRef50_Q15XA0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15XA0_PSEA6 Length = 191 Score = 42.6 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D + + ++ L K + ++L + G T +A + S I + Q + + Sbjct: 126 DVVELDAALSALAKFDKRKAEILELQFFAGSTVSDIAQFYAVSPRTIERDGQFGKAWLHR 185 Query: 109 MLMAL 113 L Sbjct: 186 ELSIA 190 >UniRef50_Q029S3 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Bacteria RepID=Q029S3_SOLUE Length = 197 Score = 42.6 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 22/62 (35%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D D + + + RL + + ++ + G++ A S I + Q A + Sbjct: 126 DVDLLGLNDALDRLAELDERQGRIVELRFFAGLSIEETAEVMNLSPASIKREWQTARAWL 185 Query: 107 EG 108 Sbjct: 186 FR 187 >UniRef50_C6M4E4 Putative uncharacterized protein n=1 Tax=Neisseria sicca ATCC 29256 RepID=C6M4E4_NEISI Length = 126 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 11/122 (9%) Query: 4 IQMVLERWGAW--AANNHEDVTWSSIAAGFKGLITSKVKSRPQCC---DDDAM--IICGC 56 I +L RWG W +++ +S A + +RP D D++ + Sbjct: 3 IDDLLARWGFWRSVRDDNGLGYATSAANRAMAGDANTGGTRPLLPYGVDADSVFSAVDRV 62 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSL-AGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 + L + + + +L Y G S + CS + L AE ++ L ++ Sbjct: 63 VMGLPRFHQE---VLKVQYSGGFATRSAKVKECGCSGASFYRYLSDAEAMLAVRLRDGEV 119 Query: 116 RL 117 Sbjct: 120 GR 121 >UniRef50_C8WRE2 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRE2_ALIAD Length = 179 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 DD ++ ++ ++ D+LV YV G+T +A + G + RL + Sbjct: 107 SDDSTLLRADLARAMRAIRAEERDVLVLAYVQGLTLREIAERLQIPLGTVKTRLHRGLRG 166 Query: 106 IEGMLM 111 + L Sbjct: 167 LRQQLA 172 >UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechococcus sp. RS9916 RepID=Q05SP3_9SYNE Length = 248 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 2/83 (2%) Query: 18 NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVV 77 + S A G LI C DD +L++ + +Y+ Sbjct: 143 PRSRDRYPSDADGDIPLIQELSDMTVSCDDDQQRE--WLQEQLEQLPQRARSCIERHYLA 200 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQ 100 G + +A + CS I + L+ Sbjct: 201 GTSAKDIAKEDGCSCSEIRRILR 223 >UniRef50_C7QKN1 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Actinomycetales RepID=C7QKN1_CATAD Length = 239 Score = 42.2 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 20/121 (16%) Query: 12 GAWAANNHEDVTWSSIA------------AGFKGLITSKVKSRPQCCD-----DDAMIIC 54 G W + + + + T++ + P D A++ Sbjct: 119 GLWRRYGDDLTGMENPLGYLRTAVVNNARSVLRRRKTARGYTPPHIPDAASAESVALLSE 178 Query: 55 G---CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + ++K ++LV Y ++ +A S G + + + +L Sbjct: 179 EHREVLEAMQKLPPRQREVLVLRYWSDLSEADIADALGISRGTVKSTASRGLEALGKILK 238 Query: 112 A 112 Sbjct: 239 G 239 >UniRef50_B5RWL8 Extracytoplasmic function sigma factor (Iron-regulated) protein n=4 Tax=Ralstonia solanacearum RepID=B5RWL8_RALSO Length = 185 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 12/93 (12%) Query: 12 GAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLL 71 G W + + ++ G + D + A + + ++ Sbjct: 93 GTWVESTADLPEYADETPGHDRQV------------DAGRELDRLSAAIAQLPPRCQEVF 140 Query: 72 VDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 V + + M +A + S + K +++ Sbjct: 141 VLHKIHDMPQAEVAVRLGISRKAVEKHIRRGMS 173 >UniRef50_B1I489 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I489_DESAP Length = 186 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 14/98 (14%) Query: 13 AWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLV 72 AW+ F+ + + +I + L D+++ Sbjct: 90 AWSQEEAHLPGPPEELPEFQVVAREEHA-----------VISAAIDGLAAEYQ---DVIL 135 Query: 73 DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 Y MT +A +G + RL+KA I+E +L Sbjct: 136 LKYQFEMTTKRIAETLNIPEGTVKTRLRKARAILESVL 173 >UniRef50_Q2N5E1 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2N5E1_ERYLH Length = 185 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D + + RL+ +++L +++ Y GMT +A S+ + +R Q A + Sbjct: 117 DLARLNSALVRLEAIDAELMEIVEMRYFGGMTVPEVAEVTGWSEPTVKRRWQVARAWL 174 >UniRef50_A6GD49 RNA polymerase sigma-70 factor, ECF subfamily protein n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6GD49_9DELT Length = 218 Score = 41.9 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 14/114 (12%) Query: 5 QMVLERWGAWAA----NNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 + VL +W AW E + S+A G+ T+ ++R Q +A L Sbjct: 84 RNVLRQW-AWERKRKRTREEGLGEVSVADLGVGVSTAFRQAREQ---------KLLVAGL 133 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 ++ D +L YY G+ +AG +G + R++KA+ ++E L AL Sbjct: 134 QRLPIDAQVILELYYWEGLRAREIAGVFAIPEGTVRGRIRKAKVLLEAELDALT 187 >UniRef50_B0VNN5 Putative uncharacterized protein n=5 Tax=Acinetobacter RepID=B0VNN5_ACIBS Length = 176 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 48/145 (33%), Gaps = 32/145 (22%) Query: 4 IQMVLERWGAW--AANNHEDVTWSSIAAGFKG--------------------------LI 35 ++ L ++GAW + + + + IA + Sbjct: 19 LEEWLYQFGAWMYSNSGTCGKSINPIAVAMDQAAKKRKQEVKGKEQIMADWLCSDDLIIP 78 Query: 36 TSKVKSRPQCCDDDAMIICGCMARLKKNNS---DLHDLLVDYYVVGMTFMSLAGKHC-CS 91 + + + D++A + + ++ + + D ++D Y+ G ++ + K Sbjct: 79 KGRGRITCEITDNEARAVQRLILDMQGQSEILDEWLDAVIDRYLYGNSWSDMVIKVGRVD 138 Query: 92 DGYIGKRLQKAEGIIEGMLMALDIR 116 + I + A + L A+ R Sbjct: 139 NPTILRTQHDAREDVRCGLAAMHCR 163 >UniRef50_A4JX61 Putative uncharacterized protein n=1 Tax=Burkholderia phage phi644-2 RepID=A4JX61_9CAUD Length = 139 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 4/128 (3%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDI++ LE WG A G + + S K Q D + + Sbjct: 3 RDIEIRLENWGKAQRTGAGGGRAIGSAEG-RYVAPSIEKRVAQVTVIDLLDADEVEQAWR 61 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDG---YIGKRLQKAEGIIEGMLMALDIRLE 118 K ++L +Y++ M + K L A+ IE +L + + Sbjct: 62 KIMPFDKEVLRMHYILRMDPRVICRKLRIPHRPVSTFNMALSHAKREIEKVLDRMTEKRR 121 Query: 119 MDIVVNNS 126 + Sbjct: 122 AHVARQKE 129 >UniRef50_UPI000178967B RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178967B Length = 216 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 +A+ + + L+ DL ++ +Y + +A +G + RL +A I+ Sbjct: 109 EAIELNEAVTHLED---DLRRVIQLHYYRDIPINHIAKMIGIPEGTVKSRLHRARAILAE 165 Query: 109 MLMALDIR 116 L + R Sbjct: 166 RLESSTER 173 >UniRef50_B1YHB9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YHB9_EXIS2 Length = 181 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 8/100 (8%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 N + + + A I K SR + D +I ++ L+K D+LV + Sbjct: 80 IRNCYRVLNQQTAVADLIEQIPVKESSREEHLD----LID-ALSHLRKEYR---DVLVLF 131 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 Y + +A + + L++ ++ L LD Sbjct: 132 YFHDVPMKEIASFIGITLNTVKTYLRRGREELKKQLGGLD 171 >UniRef50_A8M0I6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M0I6_SALAI Length = 166 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 38/123 (30%), Gaps = 14/123 (11%) Query: 5 QMVLERWG-AW--AANNHEDVTWS--SIAAGF----KGLITSKVKSRPQCCDDDAMI--I 53 Q L R G AW + V ++ ++ F + + + P+ +D + + Sbjct: 43 QETLIRVGLAWPRLRADGNPVGYAQRTMTNLFLNQRRRRRPVPIGTIPEIAREDTALAAV 102 Query: 54 CG---CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L ++ YV ++ + C+ + +L + + L Sbjct: 103 DSTATVRRILASLPPKQRAVIALRYVADLSDDEIGRLLDCAPATVRSQLSRGLSRLRATL 162 Query: 111 MAL 113 Sbjct: 163 TTE 165 >UniRef50_B0C6N2 RNA polymerase sigma-24 subunit n=3 Tax=Cyanobacteria RepID=B0C6N2_ACAM1 Length = 188 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + + + ++ Y G++ +A + S G + R++ + G+L Sbjct: 135 MAQIPPEQQQVIELAYFQGLSQSEIAKQTGLSLGTVKTRIRLGLSKLRGILDQS 188 >UniRef50_B1ZRZ7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Verrucomicrobia RepID=B1ZRZ7_OPITP Length = 189 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 24/56 (42%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++I + +L+ + + ++V + G T +A ++ I + A+ + Sbjct: 126 LLINEAVEKLEAQDPERARVVVLKFFGGFTNHEVAASLGVTERTIERHWAFAKAWL 181 >UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D877_9CLOT Length = 924 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + ++ + RL + +V YY+ ++ +A CS+G I RL I+ Sbjct: 126 ETKRLVQEMIDRLPEEQRMA---VVLYYLENLSVGQIARLMECSEGTIKSRLNYGRKSIK 182 Query: 108 GMLMALD 114 ++AL+ Sbjct: 183 AQVLALE 189 >UniRef50_Q01VZ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=root RepID=Q01VZ3_SOLUE Length = 189 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 11/89 (12%) Query: 34 LITSKVKSRPQCCDDDAMIICGC-----------MARLKKNNSDLHDLLVDYYVVGMTFM 82 L + R Q D+ +++ G + L + ++ + G+ Sbjct: 98 LSQKRGGLRHQTSLDEGLMVAGQPDAGLVALDDALLALAAVDPRKAKVVEMRFFGGLEEK 157 Query: 83 SLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 +A S + + + A + G L Sbjct: 158 EIARVLDISTDTVQRDWKAARAWLYGQLA 186 >UniRef50_C6PXW0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PXW0_9CLOT Length = 211 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 +D ++I G + LK + + +LV Y+ + +A + ++ +A + Sbjct: 145 EDKIVIEGLLNTLKNDERE---ILVLRYLKDYSIQDVAEIMDIPINTVKTKIYRALNFL 200 >UniRef50_B2A477 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A477_NATTJ Length = 187 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 44/121 (36%), Gaps = 17/121 (14%) Query: 9 ERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIIC-------------G 55 E + +W + + +++ ++ K ++ DD+ ++I Sbjct: 70 EDFQSWIYS----IARNALIDYYRKKGRKKEEASEAISDDETVLIDTPEDHVLLEEHSKE 125 Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 L+ + + +++ +V + +A S+G I L + + L + ++ Sbjct: 126 IFKLLEILSIEQQEVIQLRFVDELKIKEIAKVLDKSEGAIKGLLYRGLNKLSRHLDSKEV 185 Query: 116 R 116 + Sbjct: 186 Q 186 >UniRef50_D0LGY0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LGY0_HALO1 Length = 174 Score = 40.3 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++ I ++RL++ + ++ + Y G T +A + + +R + A + Sbjct: 106 EEVASITRSLSRLQREYPEHAEIALLRYFAGCTVAEIAELLGIAVRTVERRWRFAAARL 164 >UniRef50_C1ZAF4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZAF4_PLALI Length = 189 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 36 TSKVKSRPQCCDDDAMI--------ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGK 87 ++ D ++ I +ARL + + LL Y G ++ +A Sbjct: 99 ANRQYDEESTPDPLGLLLAKEREKLIQSAIARLLPKDQE---LLTLKYTQGWSYFEIAKH 155 Query: 88 HCCSDGYIGKRLQKAEGIIEGMLMA 112 ++ + +L +A + +L A Sbjct: 156 LGLTESQVTTQLHRARVRLRQLLSA 180 >UniRef50_C5BZ96 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BZ96_BEUC1 Length = 181 Score = 40.3 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L +V Y +T +A + S+G + + L + +EG+L Sbjct: 107 LSTLPRRERACVVLRYYSDLTVRQIAEQLGVSEGAVKRYLSQGVRRLEGVL 157 >UniRef50_A1SDN5 Sigma-70, region 4 type 2 n=1 Tax=Nocardioides sp. JS614 RepID=A1SDN5_NOCSJ Length = 174 Score = 40.3 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 18/47 (38%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 + L + L YV + +A + CS+G + +L + Sbjct: 106 LVEALATLSPRQRTALALRYVEDLDVRGIAQRMGCSEGTVKSQLSRG 152 >UniRef50_C8WJ47 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Eggerthella lenta DSM 2243 RepID=C8WJ47_EGGLE Length = 190 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 10/93 (10%) Query: 33 GLITSKVKSRPQCCDDD----------AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFM 82 S+ +++P D+ A++ L ++ +YV G + Sbjct: 75 RRTASRHRTQPLPDDETLLPKTPPASAALMANEVWRVLDTLPPKYRAVVHLHYVEGYSTE 134 Query: 83 SLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 +A C + RL++A ++ ++ + Sbjct: 135 EIAEIAKCRPSTVRSRLRRARAQLKTLIEQEES 167 >UniRef50_B5G9W5 RNA polymerase ECF-subfamily sigma factor n=1 Tax=Streptomyces sp. SPB74 RepID=B5G9W5_9ACTO Length = 192 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 +A L D++V Y +G +A + + L++A+ I+ L Sbjct: 129 AIAALNDR---QFDVVVMRYFLGYPTARIARFTGLNPRTVDYHLRRAKEILSRQLGLSTE 185 Query: 116 RLE 118 + Sbjct: 186 PRK 188 >UniRef50_C6RMQ2 Putative uncharacterized protein n=2 Tax=Acinetobacter RepID=C6RMQ2_ACIRA Length = 184 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 42/131 (32%), Gaps = 35/131 (26%) Query: 3 DIQMVLERWGAW--AANNHEDVTWSSIAAGFKGLITSKVKSRP----------------- 43 D++ L ++GAW + + + IA + + K + Sbjct: 17 DLEGWLNQFGAWMCSNTGTCGKSINPIAVAMDEAVVKQRKFKLGVKKTRQIIADYMMEDE 76 Query: 44 -----------QCCDDDAMIICGCMARLK---KNNSDLHDLLVDYYVVGMTFMS--LAGK 87 Q D++A + + ++ + + D ++ Y G ++ + Sbjct: 77 KPKLSRGAVVCQIDDNEARAVQRLILDMQGQSEIMDEWMDAIICRYFYGNSWSQFVVWTP 136 Query: 88 HCCSDGYIGKR 98 ++G I + Sbjct: 137 LRDNEGQIVRY 147 >UniRef50_A8F7X8 Transcriptional regulator, DeoR family n=1 Tax=Thermotoga lettingae TMO RepID=A8F7X8_THELT Length = 322 Score = 39.9 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI---- 115 + ++ L ++ DYYV M +A K S + K L+ A +E ++ +++ Sbjct: 1 MTISDDLLFEVAFDYYVKNMLQKDIARKLGVSRVQVSKYLKMA---VERKIVRIEVIPPK 57 Query: 116 ---RLEMD 120 +LE++ Sbjct: 58 IPEKLEIE 65 >UniRef50_C7MS70 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-E family n=2 Tax=Actinomycetales RepID=C7MS70_SACVD Length = 197 Score = 39.5 bits (91), Expect = 0.034, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L++ ++V Y G++ +A S G + + KA + G L Sbjct: 135 LRELPPKQRAVIVLRYYEGLSEAEIAASLGISPGTVKSQASKALTSLRGKL 185 >UniRef50_UPI0001C37E82 ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E82 Length = 199 Score = 39.5 bits (91), Expect = 0.035, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 I ++ N + +V YY+ G+T +A + K ++ AE ++ +L Sbjct: 130 ISELYNAIESLNPMQKERIVLYYIKGLTQQQIAELQRVRLFTVQKSIKAAEKNLKKILEM 189 Query: 113 L 113 Sbjct: 190 G 190 >UniRef50_Q38VH3 Putative uncharacterized protein n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38VH3_LACSS Length = 182 Score = 39.5 bits (91), Expect = 0.035, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 38 KVKSRPQCCDDDAMIICGCMARLKKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 S P C D+A+I +L + + LV Y + +A + Sbjct: 107 DQISDPHCDPDNAVIYNDLFEKLYQVCDPRERRFLVLRYFANASLKEIAVDLNITRRTA 165 >UniRef50_A3ZWG0 Probable ECF sigma factor AdsA n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWG0_9PLAN Length = 203 Score = 39.2 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 A L + D +++ YV G +A + SD + L + ++ +L Sbjct: 141 SRLQAALAELREDQREVIRLKYVEGWPSKDIANELGKSDAAVRVLLTRTLKQLQAVLAEQ 200 Query: 114 DIR 116 ++R Sbjct: 201 ELR 203 >UniRef50_UPI0001695612 hypothetical protein Plarl_25483 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001695612 Length = 207 Score = 39.2 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 I + +++ L DLL Y+ G A K S + + + +A G Sbjct: 146 KIDRVLEVMEQQEPHLADLLRLRYIEGCGISEAAKKMNISRSTLYRWVPEAIG 198 >UniRef50_D1CEP2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CEP2_THET1 Length = 376 Score = 39.2 bits (90), Expect = 0.041, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++ A I+ + L +L+ + V GM +A K S+G + R+ + + ++ Sbjct: 106 EELATILDEALRHLPAETR---SILLQHVVEGMPQADIARKLGISEGAVAVRIHRGKLLL 162 Query: 107 EGML 110 +L Sbjct: 163 RKIL 166 >UniRef50_Q01Y10 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Bacteria RepID=Q01Y10_SOLUE Length = 186 Score = 39.2 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 15/50 (30%) Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + ++ Y G++ A S + + A+ + L Sbjct: 137 NVDPRKARVVELRYFGGLSVEETAEALRISPETAKRDWKMAKAWLLRELA 186 >UniRef50_A7AH11 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AH11_9PORP Length = 195 Score = 39.2 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 15/123 (12%) Query: 3 DIQMVLERWG-----AWAANNHEDVTWSSI-------AAGFKGLITSKVKSRPQCCDDDA 50 +IQ L +W + + S A + S + D Sbjct: 65 NIQSFLFKWLQNSCLNHIKHQMIVDEYESCVRIAEARIAFWGESTDSNDVLKSVINQDLR 124 Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 II + +L Y ++ +A S + +++A + L Sbjct: 125 EIIELSVNKL---PPKCAQAFRLAYFHDISHKEIAEIMGISPRTVEGHIRQALAFLRKDL 181 Query: 111 MAL 113 L Sbjct: 182 KGL 184 >UniRef50_Q3SQV6 IstB-like ATP-binding protein n=3 Tax=cellular organisms RepID=Q3SQV6_NITWN Length = 356 Score = 39.2 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 10/57 (17%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 M++ +AR+++ +++ G T ++A S + K L+ E E Sbjct: 1 MLVVETIARIRRE----------HFIKGKTIRAIARDLKVSRNTVRKVLRSGETSFE 47 >UniRef50_C7I208 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thiomonas intermedia K12 RepID=C7I208_THIIN Length = 187 Score = 39.2 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 14/79 (17%) Query: 43 PQCCDD---DAMI--------ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCS 91 P+ DD +A++ + C+ +L+ DLL YV+G + +A + Sbjct: 107 PEIADDRTPEALLEARLQGQPMEDCLGQLQ---PRQRDLLAATYVLGQSHAEVARERALP 163 Query: 92 DGYIGKRLQKAEGIIEGML 110 G + +++A + L Sbjct: 164 LGTVKTLIRRAVLFLRDCL 182 >UniRef50_Q2IJT3 Sigma-24 (FecI-like) n=3 Tax=Anaeromyxobacter RepID=Q2IJT3_ANADE Length = 221 Score = 39.2 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 G A L + + L V +++ +A C G + RL +A + G L A Sbjct: 156 DGLAAALGALPPEWREALWLREVEELSYQEIARVQGCPVGTVRSRLARARRELAGRLRAE 215 Query: 114 D 114 D Sbjct: 216 D 216 >UniRef50_D0CCC1 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ATCC 19606 RepID=D0CCC1_ACIBA Length = 153 Score = 39.2 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 13/116 (11%) Query: 4 IQMVLERWGAWAANNHE--DVTWSSIAAGFKG-----LITSKVKSRPQC--CDDDAMIIC 54 I+ LE++G+W + + SS+ ++ + + P C D+ A + Sbjct: 25 IEWHLEQYGSWLLLDDHYFSLGESSVLGHLIDTANGVVVDRRQRVAPLCKINDEHADAVA 84 Query: 55 GCMARLKKN----NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 + L +N +++ +YV + ++A K S+ + + + Sbjct: 85 DMLTHLMQNETTKTKQWMRIVIMFYVEFKSEETIAKKLGVSEFSVARDKMLGMVRL 140 >UniRef50_A3ZWU1 RNA polymerase ECF-type sigma factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWU1_9PLAN Length = 173 Score = 39.2 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 33 GLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSD 92 G + D+ + +A L + +++ +L+ Y+ ++ +A + S Sbjct: 88 GSPAERDPLGWLLADERQQQVRDALAELPQRDAE---ILLLKYLEDWSYQQIADRIGASH 144 Query: 93 GYIGKRLQKAEGIIEGMLMALDI 115 + RL +A G + L A ++ Sbjct: 145 SAVEARLHRARGRLRDKLRARNV 167 >UniRef50_A0LT00 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Actinomycetales RepID=A0LT00_ACIC1 Length = 179 Score = 39.2 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 +A L+ + L+ Y ++ +A S G + + + G L A Sbjct: 111 EVLAALRALPRRQRETLILRYYADLSEQEIARTLGISRGAVKSHTFRGLAALRGRLAA 168 >UniRef50_C0ZBE3 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBE3_BREBN Length = 181 Score = 39.2 bits (90), Expect = 0.047, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + I +ARL+ N +++ Y T +A +G I L KA G + L Sbjct: 121 IQIEEALARLRPNYRH---IIILKYFEDRTIRDIAEVLGHPEGTIKTWLHKALGALRKDL 177 >UniRef50_A4E6Q4 RNA polymerase sigma factor n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Q4_9ACTN Length = 263 Score = 38.8 bits (89), Expect = 0.048, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 DD ++I + + + +++ +V GMT + +A K S + + L++ Sbjct: 195 DDRLVIEEAI---RDFSPREREVIELRFVKGMTQIEIAKKLGISQVQVSRLLRR 245 >UniRef50_Q7UMX2 Probable ECF sigma factor AdsA n=1 Tax=Rhodopirellula baltica RepID=Q7UMX2_RHOBA Length = 228 Score = 38.8 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 + + +L + +++ YV GM +A + +D I L ++ +E L A Sbjct: 167 MSQAIGQLS---EEQQNVIRLRYVDGMPTKQIAEQLGKTDVSIRVLLSRSMRQLEKQLEA 223 Query: 113 LDIRL 117 Sbjct: 224 NRPTR 228 >UniRef50_A8L8N4 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Frankia RepID=A8L8N4_FRASN Length = 171 Score = 38.8 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 D AM + L++ ++V Y + ++A CS G + +A + Sbjct: 97 DLAMR-DQVLRALRELPKRQRAVVVLRYFDDLPEAAVAEILGCSVGSVKTHASRALARLR 155 Query: 108 GMLMALDIRLEMDI 121 G D+R+ ++ Sbjct: 156 GSQHLGDVRVRIER 169 >UniRef50_C0C2S2 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2S2_9CLOT Length = 207 Score = 38.8 bits (89), Expect = 0.050, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 18/57 (31%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M ++ +++ Y M +A S + + L +E +L Sbjct: 141 EELMEKILSLPPHESQVIIMKYYNEMKLEEIASAMDISRSTVKRYLAHGRASLEKIL 197 >UniRef50_Q893M5 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=Q893M5_CLOTE Length = 175 Score = 38.8 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D +II + +LKK+ + +LV Y+ +A + ++ ++ ++ Sbjct: 108 EDKIIIEELLEKLKKDERE---ILVLRYLKDYPIKDVAFIMDIPVNTVKTKIYRSLKFLK 164 >UniRef50_A3TQ93 Putative RNA polymerase ECF-subfamily sigma factor n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TQ93_9MICO Length = 172 Score = 38.8 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 21/49 (42%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 +A L++ + L + + +Y+ + +A + G + RL + Sbjct: 93 VVAALRQLSPVLRETVALHYLADRSLEQIAQELEVPIGTVKARLHRGRA 141 >UniRef50_C4XNK9 RNA polymerase ECF-type sigma factor n=2 Tax=Desulfovibrio RepID=C4XNK9_DESMR Length = 188 Score = 38.8 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%) Query: 16 ANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMI--IC--GCMARLKKNNSDLHDLL 71 ++ S++ GF I + DDA+I I A + + ++L Sbjct: 88 KQGRVEIPASALHDGFMENIQDETA-------DDALIEKIDSEKLFAAMDALGLETREVL 140 Query: 72 VDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 + Y G++ +A S + R+ + + Sbjct: 141 ILRYQEGLSIQDIADALKISVSAVKMRISRGLERL 175 >UniRef50_A6G924 RNA polymerase sigma-70 factor n=6 Tax=Plesiocystis pacifica SIR-1 RepID=A6G924_9DELT Length = 220 Score = 38.8 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 71 LVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNSN 127 L +Y M+ +A + G + RL++ ++ L +++ D+++ +++ Sbjct: 134 LELHYWEHMSDREVALALGVAHGTMKSRLRRGRKLLAERLETMNVG---DVLLESTS 187 >UniRef50_C7PWP3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PWP3_CATAD Length = 176 Score = 38.8 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 8/73 (10%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD- 114 +A L+K +V +++VG+T +A + + G + RL + + G L D Sbjct: 101 IIAALRKIPEAERRAIVLHHIVGLTVEDVAAETGVAQGTVKARLHRGRHRLSGHLTIDDP 160 Query: 115 -------IRLEMD 120 IR EM Sbjct: 161 VGRSQESIRKEMH 173 >UniRef50_A5I7E4 Putative glucitol operon regulator SorC n=10 Tax=Clostridium RepID=A5I7E4_CLOBH Length = 323 Score = 38.8 bits (89), Expect = 0.058, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 10/65 (15%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA--EGII--------EGM 109 +K ++ L+ + YY+ MT +A + I + L+KA EGI+ +G Sbjct: 1 MKYDDRILYKVAQMYYIDNMTQSEIAKRLGQYRTTISRMLKKAREEGIVTINIKNNFDGC 60 Query: 110 LMALD 114 D Sbjct: 61 FQLED 65 >UniRef50_C7PZ57 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PZ57_CATAD Length = 171 Score = 38.8 bits (89), Expect = 0.061, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L + + +LV Y +T +A S G + + +A + + A Sbjct: 106 DAVIRILSQLPPRMRAVLVLRYYDDLTEAQIAEALGISVGTVKSQAARALAKLREAMAAH 165 Query: 114 DIRL 117 + Sbjct: 166 EEER 169 >UniRef50_A6TPP5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TPP5_ALKMQ Length = 139 Score = 38.8 bits (89), Expect = 0.061, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++A I + L D ++ YY M +A S + RL++ + ++ Sbjct: 72 EEAKAIKQKVDALPDIQKDA---IILYYYHDMKAKDIAKIMGVSLPTVKSRLKQGKDKLK 128 Query: 108 GMLMALD 114 M D Sbjct: 129 KMFSEED 135 >UniRef50_A5VCC1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VCC1_SPHWW Length = 176 Score = 38.8 bits (89), Expect = 0.061, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 L + ++D L++ Y+ G + LA + G I L ++ ++G L Sbjct: 124 LDRLDADQRALVLAAYLNGESREELAERLGHPTGTIKSWLHRSLARLKGCLDG 176 >UniRef50_A6NPX5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NPX5_9BACE Length = 92 Score = 38.4 bits (88), Expect = 0.063, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 16/48 (33%) Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L+ YY G+ + + I + +++ E + L Sbjct: 31 VTPHQRQALLLYYAEGLNMREIGEQLGVDKSTISRTIKRGERRLRRCL 78 >UniRef50_D1VHA9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Frankia sp. EuI1c RepID=D1VHA9_9ACTO Length = 194 Score = 38.4 bits (88), Expect = 0.063, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L++ ++V Y +T +A + C G + + + +L A Sbjct: 115 HDLLGALRQLPPRQRAVIVLRYFDDLTEAEIAAQLGCRPGSVKTHAARGMSRLRELLGAS 174 Query: 114 DIRLEM 119 + M Sbjct: 175 TVADRM 180 >UniRef50_A8SKN1 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKN1_9FIRM Length = 147 Score = 38.4 bits (88), Expect = 0.063, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCC--DDDAMIICGCMARLKKNNSDLHDLLV 72 + NN+ ++ + LI+ ++ Q + + M I ++ L N + ++++ Sbjct: 48 SYNNNTGSDFNVVENKRLNLISEQIALSQQLKKVEYEYMEIKKGLSYL---NKEEYEIIE 104 Query: 73 DYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 Y + + S I + ++KA Sbjct: 105 MRYFKRWSIEKIENNKYISKSSIYREIEKA 134 >UniRef50_C4DIN0 RNA polymerase sigma factor n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DIN0_9ACTO Length = 198 Score = 38.4 bits (88), Expect = 0.069, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 21/55 (38%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + L++ +V +Y+ M+ +A + +G + L + + L Sbjct: 125 LVEALRQVPEKQRRAVVLHYLGDMSVADIAAQTGAKEGTVKSWLHRGRSELARYL 179 >UniRef50_D0D7I5 Transcriptional regulator, DeoR family n=1 Tax=Citreicella sp. SE45 RepID=D0D7I5_9RHOB Length = 316 Score = 38.4 bits (88), Expect = 0.072, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA-EGIIEGMLMAL 113 ++ + ++ YY+ G +A + S + L+ A E I G+ +A Sbjct: 8 SDRIVAEIAWLYYIKGYNQAEIAKRMNLSRPTVITYLRLARERQIVGVKIAG 59 >UniRef50_Q65D80 Putative uncharacterized protein n=3 Tax=Bacillus RepID=Q65D80_BACLD Length = 189 Score = 38.4 bits (88), Expect = 0.075, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 11/100 (11%) Query: 29 AGFKGLITSKVKSRPQCCDDD-AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGK 87 + + + + DD M+ + +L+K ++ +Y + +A Sbjct: 97 VLMDRPLQDEGREQEMHADDRIGML--EAVQQLRKEYQTA---IILFYYHDLPIHDIAEV 151 Query: 88 HCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNSN 127 +G + L++A+ ++ +L + D NN + Sbjct: 152 MNAPEGTVKTYLKRAKLELKQLLTGGE-----DAWTNNGS 186 >UniRef50_C8WJQ5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WJQ5_EGGLE Length = 197 Score = 38.4 bits (88), Expect = 0.080, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 D+A+ + +A L ++ +LV +YV ++ S+G + RL +A Sbjct: 126 DEALDVRDAIASLSADDRL---VLVLFYVNDFPVRQISQIMNVSEGAVRTRLSRAR 178 >UniRef50_B2HVW8 Putative uncharacterized protein n=4 Tax=Acinetobacter baumannii RepID=B2HVW8_ACIBC Length = 158 Score = 38.4 bits (88), Expect = 0.081, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 17/123 (13%) Query: 4 IQMVLERWGAW----AANNHEDVTWSSI--AAGFKG-----LITSKVKSRPQCCDDDAMI 52 I LE++GAW + I + SK R + D +A Sbjct: 17 IDGWLEQFGAWCETVRMKGGDLPDGLHINQIYWLMREAGKEVQKSKSYIRCEISDYEADQ 76 Query: 53 ICGCMARLKKNNSDLHD------LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 I + L ++ L+ V + +A + S + + A + Sbjct: 77 IQALLRSLLNSDKTDFTTKFALICLIKNKVENKGLLKVAQETNQSKAQVAIMVSCARFYL 136 Query: 107 EGM 109 G Sbjct: 137 LGH 139 >UniRef50_A1TEV0 RNA polymerase sigma factor sigK n=12 Tax=Actinomycetales RepID=SIGK_MYCVP Length = 196 Score = 38.0 bits (87), Expect = 0.082, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 + T S S + DD+ + GC+ L + L Y Sbjct: 101 VRSEQAASTRESRYGAISVDPPSDHVADDVLLDDERRRVAGCLDSLTDVQRECIQL--AY 158 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 Y G+T+ +A + + I R++ + L Sbjct: 159 Y-DGLTYAQVADRLAANLATIKSRMRDGIRALRKCL 193 >UniRef50_C6J878 RNA polymerase sigma factor n=6 Tax=Clostridiales RepID=C6J878_9FIRM Length = 180 Score = 38.0 bits (87), Expect = 0.083, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 65 SDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + +LV YY+ G + ++ +G I RL +A ++ L + + M Sbjct: 106 PEDLRILVTLYYLEGFSQKEISEALDIPEGTIKSRLSRAREFLKAQLSDEEEKRPM 161 >UniRef50_C1ZN14 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZN14_PLALI Length = 214 Score = 38.0 bits (87), Expect = 0.083, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%) Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 +L + + +L ++ Y T +A S + RL++A ++ Sbjct: 130 QLSQFDPELAQMIDLRYQQSWTLDRMAEFLGLSIATVDGRLRRAINRLKKA 180 >UniRef50_Q2SH89 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH89_HAHCH Length = 197 Score = 38.0 bits (87), Expect = 0.085, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%) Query: 41 SRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQ 100 R ++ I C+ L N + +L+ YY G + +A + L+ Sbjct: 129 LREVVNSNEKCRIHRCLRSLDVLNRNA--ILMAYY-YGYSREDIAVHIEKPVNTVKIWLK 185 Query: 101 KAEGIIEGML 110 + G + L Sbjct: 186 RGLGRLAQCL 195 >UniRef50_D0M4A3 DNA-directed RNA polymerase specialized sigma subunit n=14 Tax=Vibrionaceae RepID=D0M4A3_VIBSE Length = 190 Score = 38.0 bits (87), Expect = 0.086, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +I+ + L Y++GM ++ CS I K L+ + ++ Sbjct: 125 EQLIIMDKALDNFSSRYPRQSSALKLKYLMGMKNQEISELLECSASLIEKDLKFSRSWLQ 184 >UniRef50_A9KJR1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KJR1_CLOPH Length = 178 Score = 38.0 bits (87), Expect = 0.086, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 20/65 (30%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M I + RL D + Y+ T +A + I R+ I L Sbjct: 114 MEIDEAIKRLNSLPQDQAIAIKMKYLEQKTLEEIARQLDIQPKTIKSRIHNGIVKIRQTL 173 Query: 111 MALDI 115 + + Sbjct: 174 IGGES 178 >UniRef50_D1VK63 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Frankia sp. EuI1c RepID=D1VK63_9ACTO Length = 227 Score = 38.0 bits (87), Expect = 0.089, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 18/53 (33%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 G + L+ +LV Y + +A CS G + + + + Sbjct: 116 DGLVRALRTLPPRQRAVLVLRYFDDLPEADVAAALGCSVGSVRSQASRGLARL 168 >UniRef50_A6P2Y8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P2Y8_9BACE Length = 166 Score = 38.0 bits (87), Expect = 0.095, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 12/117 (10%) Query: 5 QMVLERWGAWAA--NNHEDVTWSSIAAGFKGLITSKVKSRPQCCDD---------DAMII 53 + +L W A++ + W + R DD D Sbjct: 47 EALLRAWQAFSRLKSEEALKGWLLKITVNCAREQRRKGGRVTYTDDLEPLAGSVEDG-QY 105 Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G + D +V +Y MT +A + G + RL +A G ++ ML Sbjct: 106 DGLWDAVLALPEDQRTAVVLFYYEDMTLAQIASVLGVAQGTVKSRLCRARGRLQEML 162 >UniRef50_D2LZ92 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ92_BACS4 Length = 180 Score = 38.0 bits (87), Expect = 0.099, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 42 RPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 Q DD M L+ + LL +Y+ G + LA + + I RL++ Sbjct: 96 GEQSSDDVGYEKIEIMELLETLPEEQCQLLKLFYIEGFSIEDLASIYKVPENTIKTRLRR 155 Query: 102 AE 103 A Sbjct: 156 AR 157 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus Re... 151 6e-36 UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3W... 149 2e-35 UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=R... 145 4e-34 UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root Re... 142 3e-33 UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root... 142 4e-33 UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax... 140 1e-32 UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterob... 139 3e-32 UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteria... 136 2e-31 UniRef50_Q7MZ44 Similarities with antitermination protein Q from... 136 3e-31 UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax... 134 7e-31 UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifo... 133 1e-30 UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteria... 128 5e-29 UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia... 121 5e-27 UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersini... 118 5e-26 UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia... 115 3e-25 UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escher... 112 3e-24 UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enteroba... 112 3e-24 UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9Z... 112 4e-24 UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23... 108 8e-23 UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mi... 106 2e-22 UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhab... 106 3e-22 UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acineto... 100 3e-20 UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemoph... 96 3e-19 UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteur... 93 2e-18 UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinob... 92 8e-18 UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenoph... 90 2e-17 UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acineto... 90 2e-17 UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root Re... 90 3e-17 UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseud... 89 3e-17 UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudom... 89 5e-17 UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudom... 88 8e-17 UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseu... 83 2e-15 UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellacea... 83 3e-15 UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannh... 83 3e-15 UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelo... 82 4e-15 UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acineto... 82 4e-15 UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Man... 82 7e-15 UniRef50_Q0I4J0 Putative uncharacterized protein n=1 Tax=Haemoph... 82 8e-15 UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax... 79 4e-14 UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acineto... 78 7e-14 UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magneto... 78 1e-13 UniRef50_Q021X5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 77 2e-13 UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfo... 77 2e-13 UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella... 75 8e-13 UniRef50_B3H0X4 Putative uncharacterized protein n=1 Tax=Actinob... 75 9e-13 UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella... 74 2e-12 UniRef50_D0S041 Putative uncharacterized protein n=1 Tax=Acineto... 72 4e-12 UniRef50_Q0C0A3 ECF sigma factor family protein n=1 Tax=Hyphomon... 72 4e-12 UniRef50_A3ZZC0 Extracytoplasmic sigma factor ECF-like protein n... 71 1e-11 UniRef50_A3I0X2 DNA-directed RNA polymerase specialized sigma su... 70 2e-11 UniRef50_B1ZSA5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 70 3e-11 UniRef50_C1A7M9 Sigma factor, ECF-like family protein n=1 Tax=Ge... 70 3e-11 UniRef50_Q01WD0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 69 4e-11 UniRef50_Q024W7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 69 4e-11 UniRef50_C1A6L8 Sigma factor, ECF-like family protein n=1 Tax=Ge... 69 5e-11 UniRef50_Q01ZV6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 69 5e-11 UniRef50_B0VKH6 Putative uncharacterized protein n=1 Tax=Acineto... 69 5e-11 UniRef50_D0LUR6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 68 1e-10 UniRef50_C1ABY3 Sigma factor, ECF-like family protein n=1 Tax=Ge... 67 1e-10 UniRef50_UPI0001744968 hypothetical protein VspiD_19055 n=1 Tax=... 67 2e-10 UniRef50_A9ENA8 ECF-family RNA polymerase sigma factor n=2 Tax=S... 66 3e-10 UniRef50_C1AC15 Sigma factor, ECF-like family protein n=1 Tax=Ge... 66 4e-10 UniRef50_D0T5A5 Putative uncharacterized protein n=2 Tax=Acineto... 66 4e-10 UniRef50_B9TKF6 Putative uncharacterized protein (Fragment) n=1 ... 66 5e-10 UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candida... 65 7e-10 UniRef50_Q7UIV2 Similar to extracytoplasmic sigma factor ECF n=1... 63 2e-09 UniRef50_Q7UJC0 Putative uncharacterized protein n=1 Tax=Rhodopi... 63 3e-09 UniRef50_Q02A05 RNA polymerase, sigma-24 subunit, ECF subfamily ... 62 4e-09 UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae Re... 61 8e-09 UniRef50_UPI00016C3CD3 WD-40 repeat protein n=1 Tax=Gemmata obsc... 61 1e-08 UniRef50_Q0C1Q3 ECF sigma factor family protein n=1 Tax=Hyphomon... 59 5e-08 UniRef50_B5JNN4 RNA polymerase sigma factor, TIGR02999 family n=... 59 5e-08 UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Ta... 57 2e-07 UniRef50_A6WBB3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 56 2e-07 UniRef50_P44192 Uncharacterized protein HI1421 n=9 Tax=Haemophil... 56 3e-07 UniRef50_C4SVI1 ATP-dependent Zn protease n=1 Tax=Yersinia frede... 55 7e-07 UniRef50_B6XKQ8 Putative uncharacterized protein n=1 Tax=Provide... 53 2e-06 UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobac... 50 2e-05 UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 48 8e-05 Sequences not found previously or not previously below threshold: UniRef50_B8F4F6 Putative anti-termination protein Q, phage assoc... 63 4e-09 UniRef50_C1ZEB5 RNA polymerase, sigma subunit, ECF family n=1 Ta... 63 4e-09 UniRef50_Q01QI6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 60 2e-08 UniRef50_D0LMI5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 60 3e-08 UniRef50_Q029S3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 60 3e-08 UniRef50_Q15XA0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 58 8e-08 UniRef50_Q2SCP5 DNA-directed RNA polymerase specialized sigma su... 58 9e-08 UniRef50_A6C669 DNA-directed RNA polymerase specialized sigma su... 56 2e-07 UniRef50_Q2N5E1 Putative uncharacterized protein n=1 Tax=Erythro... 56 3e-07 UniRef50_Q01NG1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 56 4e-07 UniRef50_Q01Y10 RNA polymerase, sigma-24 subunit, ECF subfamily ... 56 5e-07 UniRef50_B1ZRZ7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 56 5e-07 UniRef50_Q01VZ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 55 1e-06 UniRef50_D0LML4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 54 1e-06 UniRef50_D0LGY0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 53 3e-06 UniRef50_Q0C234 ECF sigma factor family protein n=1 Tax=Hyphomon... 50 2e-05 UniRef50_D1BY52 RNA polymerase, sigma-24 subunit, ECF subfamily ... 50 3e-05 UniRef50_B4WLA9 Response regulator receiver domain protein n=2 T... 48 6e-05 UniRef50_C8WJ47 RNA polymerase, sigma-24 subunit, ECF subfamily ... 48 6e-05 UniRef50_D1VHA9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 48 8e-05 UniRef50_C7MS70 RNA polymerase sigma factor, sigma-70 family/RNA... 48 9e-05 UniRef50_A8M0I6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 48 1e-04 UniRef50_Q1D268 Putative RNA polymerase sigma-70 factor, ECF sub... 48 1e-04 UniRef50_B0VNN5 Putative uncharacterized protein n=5 Tax=Acineto... 48 1e-04 UniRef50_Q01QY6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 47 2e-04 UniRef50_C7QKN1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 47 2e-04 UniRef50_Q7URL7 Similar to RNA polymerase sigma-E factor n=1 Tax... 47 2e-04 UniRef50_B5G9W5 RNA polymerase ECF-subfamily sigma factor n=1 Ta... 47 2e-04 UniRef50_UPI000178967B RNA polymerase, sigma-24 subunit, ECF sub... 47 2e-04 UniRef50_B0C6N2 RNA polymerase sigma-24 subunit n=3 Tax=Cyanobac... 46 2e-04 UniRef50_D1BWE5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 46 3e-04 UniRef50_B1YHB9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 46 3e-04 UniRef50_A7AH11 Putative uncharacterized protein n=1 Tax=Parabac... 46 3e-04 UniRef50_C8WRE2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 46 4e-04 UniRef50_B8KCE9 DNA-directed RNA polymerase specialized sigma su... 46 4e-04 UniRef50_C1ZAF4 RNA polymerase sigma factor, sigma-70 family n=1... 46 4e-04 UniRef50_D0CCC1 Putative uncharacterized protein n=1 Tax=Acineto... 46 4e-04 UniRef50_C0C2S2 RNA polymerase sigma factor n=1 Tax=Clostridium ... 46 4e-04 UniRef50_D0M4A3 DNA-directed RNA polymerase specialized sigma su... 46 4e-04 UniRef50_A8LBJ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 46 5e-04 UniRef50_A9AW11 RNA polymerase, sigma-24 subunit, ECF subfamily ... 46 5e-04 UniRef50_Q67QK7 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 46 5e-04 UniRef50_Q9KCF6 RNA polymerase sigma factor Y n=2 Tax=Bacillus R... 46 5e-04 UniRef50_C7PZ57 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 5e-04 UniRef50_A8L8N4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 6e-04 UniRef50_Q38VH3 Putative uncharacterized protein n=1 Tax=Lactoba... 45 6e-04 UniRef50_C5BZ96 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 7e-04 UniRef50_D2Q0B4 Transcriptional regulator, LuxR family n=1 Tax=K... 45 7e-04 UniRef50_A9KJR1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 7e-04 UniRef50_C6RMQ2 Putative uncharacterized protein n=2 Tax=Acineto... 45 8e-04 UniRef50_A6W4G3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 8e-04 UniRef50_B1ZQA9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 8e-04 UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostri... 45 8e-04 UniRef50_B2A477 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 8e-04 UniRef50_Q67T27 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 45 9e-04 UniRef50_B5RWL8 Extracytoplasmic function sigma factor (Iron-reg... 45 0.001 UniRef50_Q1ZEJ7 Putative RNA polymerase ECF-type sigma factor n=... 45 0.001 UniRef50_A6LZG2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 0.001 UniRef50_A0LT00 RNA polymerase, sigma-24 subunit, ECF subfamily ... 44 0.001 UniRef50_UPI0001C370C3 DNA-directed RNA polymerase specialized s... 44 0.001 UniRef50_A4E6Q4 RNA polymerase sigma factor n=1 Tax=Collinsella ... 44 0.001 UniRef50_D1AC80 RNA polymerase, sigma-24 subunit, ECF subfamily ... 44 0.001 UniRef50_D1VK63 RNA polymerase, sigma-24 subunit, ECF subfamily ... 44 0.001 UniRef50_C0ZBE3 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 44 0.001 UniRef50_UPI0001BC2FB9 DNA-directed RNA polymerase specialized s... 44 0.001 UniRef50_A6GD49 RNA polymerase sigma-70 factor, ECF subfamily pr... 44 0.001 UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechoco... 44 0.001 UniRef50_C6M4E4 Putative uncharacterized protein n=1 Tax=Neisser... 44 0.001 UniRef50_B6FXK5 Putative uncharacterized protein n=1 Tax=Clostri... 44 0.001 UniRef50_Q2IJT3 Sigma-24 (FecI-like) n=3 Tax=Anaeromyxobacter Re... 44 0.002 UniRef50_B9XAA5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 44 0.002 UniRef50_A1SDN5 Sigma-70, region 4 type 2 n=1 Tax=Nocardioides s... 44 0.002 UniRef50_B1I489 RNA polymerase sigma factor n=1 Tax=Candidatus D... 44 0.002 UniRef50_A9B5K1 RNA polymerase sigma factor n=1 Tax=Herpetosipho... 44 0.002 UniRef50_Q2JWP6 RNA polymerase sigma factor n=25 Tax=Cyanobacter... 44 0.002 UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.002 UniRef50_D1BJJ1 RNA polymerase sigma factor, sigma-70 family n=1... 43 0.002 UniRef50_A4X1T5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.002 UniRef50_A4F607 RNA polymerase ECF sigma factor n=2 Tax=Actinomy... 43 0.002 UniRef50_A0LWL9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.002 UniRef50_A6GRF7 Sigma factor, ECF subfamily protein n=1 Tax=Limn... 43 0.003 UniRef50_A9U7C4 Predicted protein n=1 Tax=Physcomitrella patens ... 43 0.003 UniRef50_UPI0001C37E82 ECF subfamily RNA polymerase sigma-24 fac... 43 0.003 UniRef50_A3ZNA7 Probable RNA polymerase sigma-E factor n=1 Tax=B... 43 0.003 UniRef50_C8WK82 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_C7PWP3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_A7B3V6 Putative uncharacterized protein n=1 Tax=Ruminoc... 43 0.003 UniRef50_D2AQV8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_B4CU29 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_D1QQH9 RNA polymerase ECF-type sigma factor n=1 Tax=Pre... 43 0.003 UniRef50_D1PI45 RNA polymerase ECF-type sigma factor n=6 Tax=Bac... 43 0.003 UniRef50_Q0FRC0 RNA polymerase sigma-70 factor n=1 Tax=Roseovari... 43 0.003 UniRef50_C8W9U8 RNA polymerase sigma factor n=4 Tax=Coriobacteri... 43 0.003 UniRef50_Q7NJR8 Glr1764 protein n=1 Tax=Gloeobacter violaceus Re... 43 0.003 UniRef50_Q67KB3 RNA polymerase ECF-type sigma factor variant n=1... 43 0.003 UniRef50_B1ZUG0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_B0N2H4 RNA polymerase sigma factor n=4 Tax=Bacteria Rep... 43 0.003 UniRef50_Q7WZ92 Putative uncharacterized protein n=1 Tax=Nonomur... 43 0.003 UniRef50_A7NKI5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_A3TPZ9 Putative RNA polymerase ECF-subfamily sigma fact... 43 0.004 UniRef50_B9XHV4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.004 UniRef50_B7B6L4 Putative uncharacterized protein (Fragment) n=1 ... 43 0.004 UniRef50_C5C2T2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.004 UniRef50_C6J878 RNA polymerase sigma factor n=6 Tax=Clostridiale... 43 0.004 UniRef50_UPI0001695612 hypothetical protein Plarl_25483 n=1 Tax=... 43 0.004 UniRef50_Q67T39 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 43 0.004 UniRef50_Q67MR5 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 43 0.004 UniRef50_A6X3H9 Transcriptional regulator, DeoR family n=11 Tax=... 43 0.004 UniRef50_A6GEF8 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocysti... 43 0.004 UniRef50_A6WAA6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.005 UniRef50_A3ZWU1 RNA polymerase ECF-type sigma factor n=1 Tax=Bla... 42 0.005 UniRef50_D1SDA4 RNA polymerase sigma factor n=1 Tax=Micromonospo... 42 0.005 UniRef50_B9CP17 RNA polymerase sigma factor n=1 Tax=Atopobium ri... 42 0.005 UniRef50_Q67LD3 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 42 0.005 UniRef50_D2LZ92 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.005 UniRef50_C8XC28 Transcriptional regulator, LuxR family n=1 Tax=N... 42 0.005 UniRef50_D1A9V2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.005 UniRef50_A6LEC9 RNA polymerase ECF-type sigma factor n=4 Tax=Bac... 42 0.005 UniRef50_B8G5V6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.005 UniRef50_D0LAC0 RNA polymerase sigma factor, sigma-70 family n=1... 42 0.005 UniRef50_C6VZP7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.005 UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 42 0.005 UniRef50_A3TQ93 Putative RNA polymerase ECF-subfamily sigma fact... 42 0.005 UniRef50_A6P2Y8 Putative uncharacterized protein n=1 Tax=Bactero... 42 0.005 UniRef50_Q02AP7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.006 UniRef50_A4XLN5 RNA polymerase sigma factor n=8 Tax=Clostridia R... 42 0.006 UniRef50_D1XKT7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.006 UniRef50_C0ZI65 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 42 0.006 UniRef50_UPI000197305F RNA polymerase ECF-type sigma factor n=1 ... 42 0.006 UniRef50_C3RNS5 Conjugative transposon protein n=6 Tax=Bacteria ... 42 0.006 UniRef50_Q484H9 Putative uncharacterized protein n=1 Tax=Colwell... 42 0.006 UniRef50_A8RQ09 Putative uncharacterized protein n=1 Tax=Clostri... 42 0.006 UniRef50_A6TPP5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.006 UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subf... 42 0.006 UniRef50_B0P0F0 Putative uncharacterized protein n=1 Tax=Clostri... 42 0.006 UniRef50_A6G924 RNA polymerase sigma-70 factor n=6 Tax=Plesiocys... 42 0.006 UniRef50_C6PXW0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.006 UniRef50_A3TPC7 Putative RNA polymerase ECF-subfamily sigma fact... 42 0.006 UniRef50_UPI0001C378AC ECF subfamily RNA polymerase sigma-24 fac... 42 0.006 UniRef50_UPI00016C377D RNA polymerase, sigma-24 subunit, ECF sub... 42 0.007 UniRef50_UPI00016C427A RNA polymerase sigma-H factor n=1 Tax=Gem... 42 0.007 UniRef50_D1SBY5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.007 UniRef50_C7QFT3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.007 UniRef50_C1ZN14 RNA polymerase sigma factor, sigma-70 family n=1... 42 0.007 UniRef50_Q7UFE5 Putative uncharacterized protein n=1 Tax=Rhodopi... 42 0.007 UniRef50_C0ZB38 RNA polymerase sigma factor n=1 Tax=Brevibacillu... 42 0.007 UniRef50_D2ASW7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.007 UniRef50_P46358 Probable RNA polymerase sigma factor rfaY n=7 Ta... 42 0.007 UniRef50_UPI00016C41AC hypothetical protein GobsU_01572 n=1 Tax=... 42 0.007 UniRef50_A5VCC1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 42 0.007 UniRef50_A4XGS0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.008 UniRef50_UPI00016984C8 Sigma-70 region 2:Sigma-70 region 4 n=1 T... 41 0.008 UniRef50_Q1IW21 RNA polymerase sigma factor n=2 Tax=Deinococcus ... 41 0.008 UniRef50_B4ACX4 Possible ECF family DNA-directed RNA polymerase ... 41 0.008 UniRef50_C7QCS7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.008 UniRef50_UPI0001B9ECB9 RNA polymerase, sigma-24 subunit, ECF sub... 41 0.008 UniRef50_C5EFA1 RNA polymerase n=2 Tax=Clostridiales RepID=C5EFA... 41 0.008 UniRef50_Q24Z61 Putative uncharacterized protein n=1 Tax=Desulfi... 41 0.008 UniRef50_A6NPX5 Putative uncharacterized protein n=1 Tax=Bactero... 41 0.008 UniRef50_B8I535 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.008 UniRef50_A6G2K5 RNA polymerase sigma factor, sigma-70 family pro... 41 0.008 UniRef50_UPI00016C5360 RNA polymerase sigma factor sigW n=1 Tax=... 41 0.008 UniRef50_UPI0001C37B48 ECF subfamily RNA polymerase sigma-24 fac... 41 0.008 UniRef50_C6W8I8 RNA polymerase sigma factor n=1 Tax=Actinosynnem... 41 0.009 UniRef50_Q82WV3 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas... 41 0.009 UniRef50_Q7UMX2 Probable ECF sigma factor AdsA n=1 Tax=Rhodopire... 41 0.009 UniRef50_A4FLE7 RNA polymerase sigma factor n=2 Tax=Saccharopoly... 41 0.009 UniRef50_D0MD44 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.009 UniRef50_A5ZEP0 Putative uncharacterized protein n=6 Tax=Bactero... 41 0.009 UniRef50_C7M0J5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.009 UniRef50_B9L3F7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.009 UniRef50_B9XBJ5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.009 UniRef50_Q1IV01 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 41 0.009 UniRef50_C7MRI6 RNA polymerase sigma factor, sigma-70 family/RNA... 41 0.009 UniRef50_A8SKN1 Putative uncharacterized protein n=1 Tax=Parvimo... 41 0.009 UniRef50_B1HX03 Putative uncharacterized protein n=2 Tax=Bacilla... 41 0.009 UniRef50_A6NVZ3 Putative uncharacterized protein n=1 Tax=Bactero... 41 0.009 UniRef50_C1ZJD3 RNA polymerase sigma factor, sigma-70 family n=1... 41 0.009 UniRef50_D1CEP2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.009 UniRef50_A7HUA1 RNA polymerase sigma factor n=2 Tax=Alphaproteob... 41 0.010 UniRef50_A1TEV0 RNA polymerase sigma factor sigK n=12 Tax=Actino... 41 0.010 UniRef50_UPI00016C4E23 hypothetical protein GobsU_18637 n=1 Tax=... 41 0.010 UniRef50_Q2RHE6 Sigma-24 (FecI-like) n=1 Tax=Moorella thermoacet... 41 0.010 UniRef50_C8VXG2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.010 UniRef50_D2PM14 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.010 UniRef50_A8SWM6 Putative uncharacterized protein n=1 Tax=Coproco... 41 0.010 UniRef50_D2MK89 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.010 UniRef50_A6TP54 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.010 UniRef50_A9FK16 ECF-family RNA polymerase sigma factor n=1 Tax=S... 41 0.011 UniRef50_B5HYZ4 RNA polymerase ECF-subfamily sigma factor n=2 Ta... 41 0.011 UniRef50_A4FQL5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.011 UniRef50_Q67QA6 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 41 0.011 UniRef50_A9FFY4 ECF-family RNA polymerase sigma factor n=2 Tax=M... 41 0.012 UniRef50_Q04U83 RNA polymerase sigma factor n=6 Tax=Leptospira R... 41 0.012 UniRef50_C0Z4L0 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 41 0.012 UniRef50_UPI00016952BB RNA polymerase, sigma-24 subunit, ECF sub... 41 0.012 UniRef50_A5I7E4 Putative glucitol operon regulator SorC n=10 Tax... 41 0.012 UniRef50_C6PEP5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.012 UniRef50_C6W4C0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.013 UniRef50_A8LDH0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.013 UniRef50_A6W1G9 Putative RNA polymerase ECF-type sigma factor n=... 41 0.013 UniRef50_A6TQA4 RNA polymerase sigma factor n=61 Tax=Clostridia ... 41 0.013 UniRef50_D2MLJ7 Putative uncharacterized protein (Fragment) n=1 ... 41 0.013 UniRef50_C4DIN0 RNA polymerase sigma factor n=1 Tax=Stackebrandt... 41 0.013 UniRef50_Q3BMR1 RNA polymerase ECF-type sigma factor n=2 Tax=Xan... 41 0.013 UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.013 UniRef50_B8GMC2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.013 UniRef50_Q1AW69 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 41 0.013 UniRef50_B2A1W3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.013 UniRef50_C8WTP6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.014 UniRef50_C7QA49 RNA polymerase sigma factor n=7 Tax=Actinobacter... 41 0.014 UniRef50_UPI0001C37DE6 hypothetical protein RflaF_03772 n=1 Tax=... 41 0.014 UniRef50_B2TK38 RNA polymerase sigma-70 factor n=1 Tax=Clostridi... 41 0.014 UniRef50_A6GKI7 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocysti... 41 0.014 UniRef50_C3RL12 RNA polymerase n=2 Tax=Bacteria RepID=C3RL12_9MOLU 41 0.014 UniRef50_A0NZ04 Sigma-24 (FecI) n=1 Tax=Labrenzia aggregata IAM ... 41 0.014 UniRef50_B9XLI4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.015 UniRef50_UPI00016C52BB WD-40 repeat n=1 Tax=Gemmata obscuriglobu... 41 0.015 UniRef50_A6WZK6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.015 UniRef50_B9XQQ4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.015 UniRef50_C7I208 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.015 UniRef50_B8EQK9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.015 UniRef50_C6VSK7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.016 UniRef50_D0D7I5 Transcriptional regulator, DeoR family n=1 Tax=C... 41 0.016 UniRef50_A9GGR2 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 41 0.016 UniRef50_C4XNK9 RNA polymerase ECF-type sigma factor n=2 Tax=Des... 40 0.017 UniRef50_A9G5S7 ECF-family RNA polymerase sigma factor n=1 Tax=S... 40 0.017 UniRef50_D1CEA8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.017 UniRef50_UPI000178951B RNA polymerase, sigma-24 subunit, ECF sub... 40 0.017 UniRef50_A6GAW6 RNA polymerase sigma-70 factor n=1 Tax=Plesiocys... 40 0.018 UniRef50_Q2BDP2 RNA polymerase ECF-type sigma factor n=1 Tax=Bac... 40 0.018 UniRef50_Q2JNT2 RNA polymerase sigma factor, ECF family n=2 Tax=... 40 0.018 UniRef50_Q0BWZ2 RNA polymerase sigma factor, ECF family n=3 Tax=... 40 0.018 UniRef50_C5RXP4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.018 UniRef50_A3ZWG0 Probable ECF sigma factor AdsA n=1 Tax=Blastopir... 40 0.019 UniRef50_C6BBI9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.019 UniRef50_B5Y6J6 RNA polymerase sigma-E factor, putative n=1 Tax=... 40 0.019 UniRef50_C6PW47 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.019 UniRef50_Q67L47 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 40 0.019 UniRef50_C5WFG0 DNA-directed RNA polymerase specialized sigma su... 40 0.019 UniRef50_A7VU01 Putative uncharacterized protein n=1 Tax=Clostri... 40 0.020 UniRef50_UPI00016C3FE9 RNA polymerase, sigma-24 subunit, ECF sub... 40 0.020 UniRef50_A9BQK2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.020 UniRef50_C7QIZ2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.020 UniRef50_A1SKP0 Sigma-70 region 4 domain protein n=1 Tax=Nocardi... 40 0.020 UniRef50_UPI00016C3B4B WD-40 repeat n=1 Tax=Gemmata obscuriglobu... 40 0.020 UniRef50_B8CQF6 DNA-directed RNA polymerase specialized sigma su... 40 0.020 UniRef50_D2B4L5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.021 UniRef50_A3TGP1 Putative RNA polymerase sigma factor n=1 Tax=Jan... 40 0.021 UniRef50_C4RGL0 RNA polymerase sigma factor n=3 Tax=Micromonospo... 40 0.021 UniRef50_A3TLI1 Putative RNA polymerase sigma factor n=1 Tax=Jan... 40 0.021 UniRef50_A8MM86 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.022 UniRef50_A4JX61 Putative uncharacterized protein n=1 Tax=Burkhol... 40 0.022 UniRef50_Q8RD63 Transcriptional regulator, contains sigma factor... 40 0.022 UniRef50_Q8ELX2 RNA polymerase ECF-type sigma factor n=1 Tax=Oce... 40 0.022 UniRef50_C7Q212 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.022 UniRef50_B9XLL1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.022 UniRef50_B0P437 Putative uncharacterized protein n=1 Tax=Clostri... 40 0.022 UniRef50_A3I721 RNA polymerase sigma-70 factor n=2 Tax=Bacillace... 40 0.022 UniRef50_UPI00016C58E5 RNA polymerase sigma-H factor n=1 Tax=Gem... 40 0.022 UniRef50_Q7UR06 Similar to RNA polymerase sigma-E factor n=1 Tax... 40 0.023 UniRef50_C6XU99 RNA polymerase sigma factor, sigma-70 family n=8... 40 0.023 UniRef50_B5IJW2 Group3 RNA polymerase sigma factor SigF1 n=1 Tax... 40 0.023 UniRef50_B0MG52 Putative uncharacterized protein n=1 Tax=Anaeros... 40 0.023 UniRef50_C9YZP2 Putative sigma factor n=1 Tax=Streptomyces scabi... 40 0.023 UniRef50_Q65D80 Putative uncharacterized protein n=3 Tax=Bacillu... 40 0.024 UniRef50_A6GGQ3 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocysti... 40 0.024 UniRef50_D1C5W0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.024 UniRef50_C1P827 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.024 UniRef50_C4VHN7 Sigma-70, region 4 family n=11 Tax=Firmicutes Re... 40 0.025 UniRef50_Q2J6Q1 Sigma-24 n=7 Tax=Actinomycetales RepID=Q2J6Q1_FRASC 40 0.025 UniRef50_C4G621 Putative uncharacterized protein n=1 Tax=Abiotro... 40 0.025 UniRef50_Q2RFZ5 RNA polymerase sigma factor n=1 Tax=Moorella the... 40 0.026 UniRef50_C7Q8T4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.026 UniRef50_A7LV33 Putative uncharacterized protein n=4 Tax=Bactero... 40 0.026 UniRef50_A6NQR6 Putative uncharacterized protein n=1 Tax=Bactero... 40 0.026 UniRef50_D1CFU8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.026 UniRef50_A6G817 RNA polymerase ECF-type sigma factor n=1 Tax=Ple... 40 0.026 UniRef50_UPI0001788C67 RNA polymerase, sigma-24 subunit, ECF sub... 40 0.026 UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 40 0.027 UniRef50_C0Z5J4 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 40 0.027 UniRef50_B1KRU9 RNA polymerase sigma-70 factor family n=14 Tax=C... 40 0.027 UniRef50_C0GI27 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.027 UniRef50_D2B866 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.028 UniRef50_B8FSU1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.029 UniRef50_B5HYM1 RNA polymerase ECF-subfamily sigma factor n=2 Ta... 40 0.029 UniRef50_A8R836 Putative uncharacterized protein n=1 Tax=Eubacte... 40 0.029 UniRef50_A7NRE4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.029 UniRef50_A2RP52 Putative uncharacterized protein ps612 n=2 Tax=L... 40 0.029 UniRef50_C4DUZ6 RNA polymerase sigma factor, sigma-70 family n=1... 40 0.029 UniRef50_B4WPS3 Putative uncharacterized protein n=1 Tax=Synecho... 40 0.029 UniRef50_D1BDV6 RNA polymerase sigma factor, sigma-70 family n=3... 40 0.030 UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.030 UniRef50_Q893M5 RNA polymerase sigma factor n=2 Tax=Clostridium ... 40 0.030 UniRef50_Q1AXH1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.030 UniRef50_Q24VG6 Putative uncharacterized protein n=1 Tax=Desulfi... 40 0.031 UniRef50_B6A2T8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.031 UniRef50_C3QA70 RNA polymerase ECF-type sigma factor n=5 Tax=Bac... 40 0.031 UniRef50_UPI00017455E9 RNA polymerase sigma-70 factor n=1 Tax=Ve... 40 0.031 UniRef50_C7GAW8 RNA polymerase ECF-type sigma factor n=4 Tax=Clo... 40 0.031 UniRef50_Q67R01 RNA polymerase sigma factor n=1 Tax=Symbiobacter... 40 0.031 UniRef50_C6CXS0 RNA polymerase, sigma 28 subunit, FliA/WhiG subf... 40 0.031 UniRef50_B1ZUQ2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.032 UniRef50_C3JBB6 RNA polymerase sigma-70 factor, ECF family n=2 T... 40 0.032 UniRef50_A9AXF5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.032 UniRef50_UPI0001B4EB16 ECF subfamily RNA polymerase sigma factor... 40 0.032 UniRef50_UPI00016C5912 WD-40 repeat n=1 Tax=Gemmata obscuriglobu... 40 0.033 UniRef50_Q6MMC2 RNA polymerase sigma factor n=1 Tax=Bdellovibrio... 40 0.033 UniRef50_A1TYG1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.033 UniRef50_C7PH07 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.034 UniRef50_B1TBB4 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 40 0.034 UniRef50_D0LTI3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 40 0.035 UniRef50_D1PVX2 Putative uncharacterized protein n=1 Tax=Prevote... 40 0.035 UniRef50_A3TM98 Putative RNA polymerase ECF-subfamily sigma fact... 40 0.036 UniRef50_Q9L1Z6 Putative RNA polymerase sigma factor n=6 Tax=Str... 40 0.036 UniRef50_Q67P79 RNA polymerase ECF-type sigma factor n=1 Tax=Sym... 40 0.036 UniRef50_B6R5P8 Transcriptional regulator, DeoR family n=1 Tax=P... 40 0.036 UniRef50_A4C7J3 RNA polymerase sigma factor, sigma-70 family pro... 40 0.036 UniRef50_C6Y3L0 RNA polymerase sigma factor, sigma-70 family n=1... 40 0.037 UniRef50_A7B9G5 Putative uncharacterized protein n=1 Tax=Actinom... 40 0.037 UniRef50_Q6ANY1 Related to RNA polymerase sigma factor for flage... 39 0.039 UniRef50_Q474V4 Sigma-70 region 2:Sigma-70 region 4 n=8 Tax=Prot... 39 0.039 UniRef50_B0P6T9 Putative uncharacterized protein n=1 Tax=Anaerot... 39 0.039 UniRef50_UPI00016C5256 RNA polymerase ECF-type sigma factor n=1 ... 39 0.039 UniRef50_D2BBE7 RNA polymerase sigma factor n=1 Tax=Streptospora... 39 0.040 UniRef50_B9XBI4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.040 UniRef50_C0VYK8 DeoR family transcriptional regulator n=4 Tax=Ac... 39 0.040 UniRef50_C5C1C1 Transcriptional regulator, DeoR family n=5 Tax=A... 39 0.041 UniRef50_Q2SH89 DNA-directed RNA polymerase specialized sigma su... 39 0.042 UniRef50_C3QAU5 RNA polymerase ECF-type sigma factor n=4 Tax=Bac... 39 0.042 UniRef50_UPI00016C38E8 RNA polymerase sigma-H factor n=1 Tax=Gem... 39 0.042 UniRef50_A6KX62 Putative RNA polymerase ECF-type sigma factor n=... 39 0.042 UniRef50_UPI0001C312F5 RNA polymerase, sigma-24 subunit, ECF sub... 39 0.043 UniRef50_D2R452 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.043 UniRef50_D2R1D3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.043 UniRef50_C6PRA4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.043 UniRef50_UPI0001B58959 hypothetical protein SSPB78_10073 n=1 Tax... 39 0.043 UniRef50_C0VNT9 RNA polymerase sigma factor FecI n=1 Tax=Acineto... 39 0.044 UniRef50_C5RQ60 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.044 UniRef50_B9YFM7 RNA polymerase sigma factor n=1 Tax='Nostoc azol... 39 0.044 UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.044 UniRef50_A6EHD6 Sigma-24 (FecI-like) protein n=1 Tax=Pedobacter ... 39 0.044 UniRef50_A8F871 Transcriptional regulator, DeoR family n=1 Tax=T... 39 0.045 UniRef50_C3BA74 Putative uncharacterized protein n=3 Tax=Bacillu... 39 0.045 UniRef50_B2PU08 Putative uncharacterized protein n=1 Tax=Provide... 39 0.045 UniRef50_Q066Z3 Possible type 3 alternative RNA polymerase sigma... 39 0.046 UniRef50_B5H2R4 RNA polymerase sigma factor n=3 Tax=Streptomyces... 39 0.046 UniRef50_D2PN97 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.046 UniRef50_C0W634 DeoR family transcriptional regulator n=1 Tax=Ac... 39 0.046 UniRef50_C7H5A7 Sigma-70, region 4 subfamily n=14 Tax=Bacteria R... 39 0.047 UniRef50_UPI0001C37E01 ECF subfamily RNA polymerase sigma-24 fac... 39 0.047 UniRef50_B0G942 Putative uncharacterized protein n=1 Tax=Dorea f... 39 0.047 UniRef50_A3ZXR2 RNA polymerase ECF-type sigma factor n=1 Tax=Bla... 39 0.047 UniRef50_A4J196 Transposase and inactivated derivatives-like pro... 39 0.048 UniRef50_C4DG86 RNA polymerase sigma factor, sigma-70 family/RNA... 39 0.048 UniRef50_C7QDL0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.048 UniRef50_A0M260 RNA polymerase ECF-type sigma factor n=1 Tax=Gra... 39 0.048 UniRef50_Q2W687 DNA-directed RNA polymerase specialized sigma su... 39 0.049 UniRef50_C7Q1Q6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.049 UniRef50_B2UNI5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.049 UniRef50_UPI00019736E4 ECF subfamily RNA polymerase sigma-24 fac... 39 0.051 UniRef50_A9AUQ5 Transcriptional regulator, LuxR family n=1 Tax=H... 39 0.052 UniRef50_D2Q1G7 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.053 UniRef50_B0PHJ8 Putative uncharacterized protein n=1 Tax=Anaerot... 39 0.053 UniRef50_B0NZQ8 Putative uncharacterized protein n=1 Tax=Clostri... 39 0.053 UniRef50_UPI0001851483 RNA polymerase ECF-type sigma factor n=1 ... 39 0.053 UniRef50_UPI000197B429 hypothetical protein BACCOPRO_02759 n=1 T... 39 0.054 UniRef50_C7Q0T3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.054 UniRef50_Q21PM0 Sigma-70 region 4 n=1 Tax=Saccharophagus degrada... 39 0.054 UniRef50_B2A0Y6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.054 UniRef50_D1SFQ0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.054 UniRef50_A3UJ72 RNA polymerase sigma-70 factor n=1 Tax=Oceanicau... 39 0.054 UniRef50_B0N7Y8 Putative uncharacterized protein n=3 Tax=Bacteri... 39 0.055 UniRef50_D0L5V1 RNA polymerase sigma-70 factor, sigma-B/F/G subf... 39 0.056 UniRef50_A6G0C2 DNA-directed RNA polymerase sigma subunit (RpoE,... 39 0.057 UniRef50_B5GZ85 RNA polymerase n=1 Tax=Streptomyces clavuligerus... 39 0.058 UniRef50_C7QCU5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.059 UniRef50_A4FHE1 RNA polymerase sigma factor n=4 Tax=Actinomyceta... 39 0.059 UniRef50_A4FQI7 RNA polymerase ECF sigma factor n=3 Tax=Pseudono... 39 0.060 UniRef50_A5N6W1 RpoE n=4 Tax=Clostridium RepID=A5N6W1_CLOK5 39 0.060 UniRef50_C0EB29 Putative uncharacterized protein n=1 Tax=Clostri... 39 0.061 UniRef50_B0MUR5 Putative uncharacterized protein n=1 Tax=Alistip... 39 0.061 UniRef50_A8LDY6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.062 UniRef50_B9L2W8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.062 UniRef50_A9WDI9 RNA polymerase sigma factor, sigma-70 family n=6... 39 0.062 UniRef50_B9L3X4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.063 UniRef50_Q3SQV6 IstB-like ATP-binding protein n=3 Tax=cellular o... 39 0.063 UniRef50_Q2NDN6 RNA polymerase sigma factor n=1 Tax=Erythrobacte... 39 0.063 UniRef50_C7WYU9 RNA polymerase n=2 Tax=Enterococcus faecalis Rep... 39 0.063 UniRef50_C4KZA8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.064 UniRef50_B3R413 RNA polymerase sigma-70 factor n=1 Tax=Cupriavid... 38 0.064 UniRef50_B7UVZ8 Putative RNA polymerase sigma factor n=5 Tax=Pse... 38 0.064 UniRef50_C6J9Q6 RNA polymerase n=6 Tax=Bacteria RepID=C6J9Q6_9FIRM 38 0.064 UniRef50_C8WJQ5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.065 UniRef50_C6XXN2 RNA polymerase sigma factor, sigma-70 family n=1... 38 0.065 UniRef50_B1HXE6 RNA polymerase sigma factor Y n=3 Tax=Bacillacea... 38 0.065 UniRef50_Q04V56 RNA polymerase sigma subunit n=5 Tax=Leptospira ... 38 0.066 UniRef50_D1C190 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 ... 38 0.066 UniRef50_Q2YZY9 RNA polymerase sigma-E factor n=1 Tax=uncultured... 38 0.066 UniRef50_D0LXD4 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.066 UniRef50_Q0KCN4 DNA-directed RNA polymerase sigma subunit (RpoE,... 38 0.068 UniRef50_B5GMK1 RNA polymerase ECF-subfamily sigma factor n=4 Ta... 38 0.068 UniRef50_D1CE12 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.069 UniRef50_C7HA68 RNA polymerase ECF-type sigma factor n=1 Tax=Fae... 38 0.069 UniRef50_Q7UJX5 Probable RNA-polymerase sigma-E factor n=1 Tax=R... 38 0.070 UniRef50_D2S8S5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.070 UniRef50_D2NU89 Transcriptional regulator n=2 Tax=Rothia mucilag... 38 0.070 UniRef50_A7AAK6 Putative uncharacterized protein n=2 Tax=Parabac... 38 0.070 UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family prote... 38 0.071 UniRef50_Q1D5D4 RNA polymerase sigma-70 factor, ECF subfamily n=... 38 0.072 UniRef50_B2HV64 DNA-directed RNA polymerase specialized sigma su... 38 0.072 UniRef50_A9DUP1 Sigma-24 (FecI-like) protein n=1 Tax=Kordia algi... 38 0.072 UniRef50_A3WLE9 RNA polymerase sigma factor, sigma-70 family pro... 38 0.075 UniRef50_A8FB47 DNA-directed RNA polymerase sigma subunit n=2 Ta... 38 0.075 UniRef50_UPI00016C380C RNA polymerase sigma-H factor n=1 Tax=Gem... 38 0.076 UniRef50_Q0C430 RNA polymerase sigma-70 factor, ECF family n=1 T... 38 0.076 UniRef50_C7Q3Q5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.076 UniRef50_C4RG63 RNA polymerase sigma factor n=1 Tax=Micromonospo... 38 0.076 UniRef50_Q1IUA0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 38 0.077 UniRef50_C1A5Q9 RNA polymerase ECF-type sigma factor n=1 Tax=Gem... 38 0.077 UniRef50_Q7MXL2 RNA polymerase sigma-70 factor, ECF subfamily n=... 38 0.078 UniRef50_B1YM24 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.078 UniRef50_A7V7Z1 Putative uncharacterized protein n=1 Tax=Bactero... 38 0.078 UniRef50_D2QYF2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.078 UniRef50_C0Z5Y5 RNA polymerase ECF-type sigma factor n=1 Tax=Bre... 38 0.080 UniRef50_C4RHF9 RNA polymerase ECF-subfamily sigma factor n=1 Ta... 38 0.080 UniRef50_A4AH57 Putative RNA polymerase sigma factor n=1 Tax=mar... 38 0.080 UniRef50_A6NX52 Putative uncharacterized protein n=1 Tax=Bactero... 38 0.080 UniRef50_C7NHN4 RNA polymerase sigma factor, sigma-70 family n=1... 38 0.081 UniRef50_A0AEU0 Complete genome n=1 Tax=Listeria welshimeri sero... 38 0.081 UniRef50_A6GDL7 Putative uncharacterized protein n=1 Tax=Plesioc... 38 0.081 UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=S... 38 0.082 UniRef50_D2PVB3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.082 UniRef50_A4F9Q1 RNA polymerase ECF sigma factor n=2 Tax=Actinomy... 38 0.082 UniRef50_Q6XR77 RNA polymerase sigma factor n=2 Tax=uncultured b... 38 0.082 UniRef50_B3DQS2 DNA-directed RNA polymerase specialized sigma su... 38 0.083 UniRef50_Q3DIT8 RNA polymerase sigma factor, ECF subfamily n=8 T... 38 0.085 UniRef50_A6TX43 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.085 UniRef50_C9YZT0 Putative membrane-associated DNA-binding protein... 38 0.085 UniRef50_A9AVG8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.086 UniRef50_B1ZXG6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.087 UniRef50_A8ETG9 Sigma factor, ECF family n=1 Tax=Arcobacter butz... 38 0.087 UniRef50_A6G3U7 RNA polymerase sigma-70 factor n=2 Tax=Plesiocys... 38 0.087 UniRef50_Q637N4 RNA polymerase ECF-type sigma factor n=75 Tax=Ba... 38 0.087 UniRef50_Q2JA53 Sigma-24 n=3 Tax=Actinomycetales RepID=Q2JA53_FRASC 38 0.087 UniRef50_A3TIU4 Putative sigma factor n=1 Tax=Janibacter sp. HTC... 38 0.087 UniRef50_A6NPM0 Putative uncharacterized protein n=1 Tax=Bactero... 38 0.089 UniRef50_Q5WAM8 DNA-directed RNA polymerase ECF-type sigma facto... 38 0.090 UniRef50_Q73CE7 RNA polymerase sigma-70 factor, ECF subfamily, p... 38 0.090 UniRef50_C5CGY4 Transcriptional regulator, DeoR family n=1 Tax=K... 38 0.090 UniRef50_UPI0001B50E6C ECF subfamily RNA polymerase sigma-24 fac... 38 0.091 UniRef50_A6GCB5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.092 UniRef50_UPI00016C5798 peptidase C14, caspase catalytic subunit ... 38 0.093 UniRef50_Q1IQM4 Sigma-24, ECF subfamily n=1 Tax=Candidatus Korib... 38 0.093 UniRef50_C0Z6H7 RNA polymerase sigma factor n=1 Tax=Brevibacillu... 38 0.093 UniRef50_UPI000174489D RNA polymerase sigma factor, sigma-70 fam... 38 0.094 UniRef50_D2R2W6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.094 UniRef50_D1X4L6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.095 UniRef50_B8HNZ8 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.096 UniRef50_A9VWD6 RNA polymerase sigma factor n=40 Tax=cellular or... 38 0.096 UniRef50_A6LDP1 RNA polymerase ECF-type sigma factor n=3 Tax=Bac... 38 0.096 UniRef50_A1TML2 Putative uncharacterized protein n=1 Tax=Acidovo... 38 0.096 UniRef50_Q0BU49 RNA polymerase ECF-type sigma factor n=11 Tax=Ac... 38 0.097 UniRef50_C9YMG7 Putative uncharacterized protein n=4 Tax=Clostri... 38 0.097 UniRef50_C8WMH9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.097 UniRef50_D2EVL7 Predicted protein n=1 Tax=Bacteroides sp. D20 Re... 38 0.097 UniRef50_C4DIR0 RNA polymerase sigma factor, sigma-70 family n=1... 38 0.097 UniRef50_C6D1T7 Putative uncharacterized protein n=1 Tax=Paeniba... 38 0.098 UniRef50_C7PJP1 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.099 UniRef50_A6EB75 RNA polymerase ECF-type sigma factor n=1 Tax=Ped... 38 0.099 UniRef50_D1P7A8 Sigma-70 region 2:Sigma-70 region 4 n=1 Tax=Prov... 38 0.100 UniRef50_C7DD91 RNA polymerase sigma factor RpoE n=3 Tax=Rhodoba... 38 0.100 >UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus RepID=B4EVI6_PROMH Length = 132 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 61/127 (48%), Positives = 79/127 (62%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+Q VL RWGAW+AN + +SSIAAGFKGLI S +SR QC DDD + I + L Sbjct: 1 MRDMQEVLSRWGAWSANEGNSIDYSSIAAGFKGLIPSSRRSREQCSDDDGLKINKAVLHL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K NNS L L++ YYV S+A K S + KRLQ AEG IEG L +++L+MD Sbjct: 61 KVNNSYLFQLVIMYYVKNYPLRSMASKLGISHNEVAKRLQTAEGFIEGCLSVDNVKLDMD 120 Query: 121 IVVNNSN 127 ++ + Sbjct: 121 KIIRKHS 127 >UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3WTB9_ECOLX Length = 140 Score = 149 bits (377), Expect = 2e-35, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 74/126 (58%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLERWG WAA+ V + +AAGFK L+ + R +C D+D +II M+ L Sbjct: 1 MRNIQQVLERWGGWAASEGGSVYFPPVAAGFKNLLPATQSGRLKCSDNDGLIINSAMSCL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KK + L LL +YV M ++ K S ++ KRLQ AEG I+G L LD+ LEMD Sbjct: 61 KKKDPYLCTLLEWHYVQAMPVRAMGEKLGVSHTHVLKRLQAAEGFIDGCLAMLDVVLEMD 120 Query: 121 IVVNNS 126 V + Sbjct: 121 QSVQSK 126 >UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=REGQ_BP933 Length = 144 Score = 145 bits (366), Expect = 4e-34, Method: Composition-based stats. Identities = 98/126 (77%), Positives = 107/126 (84%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+ VLERWGAWAANN+EDVTWS IAAGFKGLI KVKSRPQCCDDDAM+ICGC+ARL Sbjct: 1 MRDIRQVLERWGAWAANNYEDVTWSPIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 +NN DLHDLLVDYYV+G TFM+LA KH CSD IGKRL KAEGI+EGMLM L +RLEMD Sbjct: 61 YRNNRDLHDLLVDYYVLGETFMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMD 120 Query: 121 IVVNNS 126 V Sbjct: 121 RYVERE 126 >UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root RepID=A4TNH3_YERPP Length = 159 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 1/125 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VL RWG WA + +SSIAAGFKGL+ KS+ CCDDD +++ GC+ARL Sbjct: 19 MRDIQLVLARWGVWAR-YSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARL 77 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K+ + ++L++ +YV+ + ++A + + I +Q AEG I+G L L+++L MD Sbjct: 78 KQCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMD 137 Query: 121 IVVNN 125 + N Sbjct: 138 PFIEN 142 >UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root RepID=REGQ_BPAPS Length = 148 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 1/127 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ VLERWG WA +N+ + WS IAAGFKGL+ + RP C D+D II C+++L+ Sbjct: 3 RDIQQVLERWGTWARDNNTGIDWSPIAAGFKGLLPLRPSMRPSCSDEDGRIIDNCVSQLQ 62 Query: 62 KNN-SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + L++ YYV G + ++A + +G I +L AEG I+G L L +RL+MD Sbjct: 63 QVRQPEELSLIIAYYVKGYSKRAIARRRRVDEGLIRAKLLIAEGFIDGCLSLLAVRLDMD 122 Query: 121 IVVNNSN 127 V + Sbjct: 123 PEVKMYS 129 >UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N2N8_PHOLL Length = 139 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 2/127 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLE WG W ++ V W IAAGFKGLI S RP CCD+D +II C+A+L Sbjct: 1 MRNIQQVLECWGGWV-DDATGVNWPPIAAGFKGLIASTRSLRPSCCDNDGLIIDACIAKL 59 Query: 61 KKNNS-DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + + ++L YY + ++ S+A D + RLQK E ++G L LDI+LEM Sbjct: 60 QTVDKSEEIEVLFMYYALRLSKRSIARLIKVPDIEVRSRLQKGESFVQGCLAMLDIKLEM 119 Query: 120 DIVVNNS 126 D + Sbjct: 120 DDEIQKH 126 >UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBF3_9ENTR Length = 131 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLERWG WAA V +SS AAGF GL + R CCDDD + I + +L Sbjct: 1 MRDIQLVLERWGGWAAEGKSKVGYSSTAAGFSGLFPESERVRLSCCDDDGIAIDAAIGKL 60 Query: 61 KKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 D DL+ +Y+ ++ ++A + CS+G I ++L AE I+ L+ ++ LEM Sbjct: 61 ISVGRKDEFDLIDKHYIRDISKSAIAREMKCSEGKIRQKLMIAETFIDACLIMANVTLEM 120 Query: 120 DIVVNNSN 127 D ++ Sbjct: 121 DEWCKKTS 128 >UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=D1NX77_9ENTR Length = 156 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 2/124 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLE+W WA +N+ V +S IAAGFKGLI++K R C D+D +II +A+L Sbjct: 12 MRDIQLVLEKWAGWA-SNNPGVDYSHIAAGFKGLISNKEAPRLSCTDNDGIIIDSVIAKL 70 Query: 61 KKNNS-DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K + +L+V +Y+ G++ +A K S+G + + +Q AEG ++G L + + LEM Sbjct: 71 KAVRKDEELELIVMHYLYGVSKRGIAKKLKVSEGRVRQMMQVAEGFVDGCLAMIGVVLEM 130 Query: 120 DIVV 123 D V Sbjct: 131 DSEV 134 >UniRef50_Q7MZ44 Similarities with antitermination protein Q from lamdoid prophage n=2 Tax=Enterobacteriaceae RepID=Q7MZ44_PHOLL Length = 143 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 1/123 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ +L WG W + + WSS+ AGFKGL++ ++ CCD+D +II GC+A+L+ Sbjct: 3 RDIQKILLHWGGWVVHGRSGLGWSSVTAGFKGLVSRTSITKLSCCDEDGLIIDGCIAKLR 62 Query: 62 KNN-SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 D + +Y GM+ S+ K+ ++ + KR+ AE I G L A D LE+D Sbjct: 63 NVQMEQECDFIECHYAKGMSKRSIGRKYKLNESEVRKRMAIAESFILGCLTASDETLELD 122 Query: 121 IVV 123 ++ Sbjct: 123 LLY 125 >UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax=Erwinia tasmaniensis RepID=B2VDR7_ERWT9 Length = 123 Score = 134 bits (338), Expect = 7e-31, Method: Composition-based stats. Identities = 53/122 (43%), Positives = 82/122 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+++L RWG WAA + ++ +A+GF+GLIT SR QC DDD +II C++RL Sbjct: 1 MRDIKLLLRRWGGWAALGERRLGYAPVASGFRGLITHHASSRLQCSDDDGIIIDSCISRL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K + + HD+LV +Y+ ++ S+A + C+DG I +++Q AEG I G+L AL+ LE + Sbjct: 61 AKVSKEQHDILVAHYLYQISLRSIARRRRCADGSIRRKIQTAEGFICGVLTALESELECE 120 Query: 121 IV 122 + Sbjct: 121 NL 122 >UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifoliae RepID=D2TCJ1_ERWPY Length = 140 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 83/121 (68%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+I+++L+RWGAWA++ + ++S+A+GF+GLIT +R QC D D +I+ C++RL Sbjct: 19 MRNIKLLLQRWGAWASSGERRLGYASVASGFRGLITHHGGNRLQCSDGDGIILDSCISRL 78 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + HD+LV +Y+ ++ S+A + C+DG I K+LQ AEG + G+L AL+ LE + Sbjct: 79 AMESKEQHDILVAHYLYLISLRSIARRRRCADGTIRKKLQTAEGFVCGVLTALECELECE 138 Query: 121 I 121 Sbjct: 139 N 139 >UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=B5XSK3_KLEP3 Length = 114 Score = 128 bits (322), Expect = 5e-29, Method: Composition-based stats. Identities = 48/114 (42%), Positives = 77/114 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+ +++RWGAWAA+++ V W IAAGFK L+ K+R QC DD+ ++I GC+ARL Sbjct: 1 MRDMYEIMDRWGAWAASDNSGVDWQPIAAGFKDLLPHGKKTRQQCDDDEGIMIDGCVARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++L++ ++V+GM+ ++A K CSDG I L+ A G +EG+L + Sbjct: 61 RMCKPEEYELIIAHFVIGMSLRAIAKKRRCSDGKIRGELRSAMGFVEGVLCIIH 114 >UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia RepID=C4SH18_YERMO Length = 124 Score = 121 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M DIQ VL RWG WA ++ + + IA+GF+G ITS K C D+D + I + L Sbjct: 1 MADIQTVLTRWGVWAR-DNAHLDYPHIASGFRG-ITSGGKQLESCSDNDGLAIDTTVGYL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K+ + DL++ +YV G + S+A C++ I ++LQ AE I+G I LEM Sbjct: 59 KRAAREKELDLIIRHYVYGQSKASIARLKKCNEREIRRQLQIAESFIDGCFTQSHITLEM 118 Query: 120 DI 121 Sbjct: 119 HK 120 >UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JRS6_YERPY Length = 141 Score = 118 bits (296), Expect = 5e-26, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 2 RDIQMVLERWGAWAANNH--EDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R++Q+V ERWG WAA+ V W +++ + L + +P C D+D + + C+A Sbjct: 3 RNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQLP--QASGKPSCTDEDGLTLDTCIAH 60 Query: 60 LKKNNSDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 + L++ Y+ G + +A + + LQ +E + G L+ L IRLE Sbjct: 61 MSTVFPQASLLILGQRYIGGHSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLE 120 Query: 119 MDIVV 123 MD V Sbjct: 121 MDPEV 125 >UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia RepID=C4T548_YERIN Length = 121 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M +IQ VL RWG WA N + + IA GFKG++ + K CCD+D ++I + L Sbjct: 1 MSNIQTVLARWGVWAREN-IHLDYPHIANGFKGMV-MRNKPAESCCDNDGLVIDKTIGNL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 ++ + + +L++ +YV G + S+A C++ I ++LQ AE IEG ++ D LEM Sbjct: 59 QRASREKELELILRHYVYGQSKASIARLKKCNEREIRRQLQLAESFIEGGIVQSDAALEM 118 Query: 120 DIV 122 + Sbjct: 119 HME 121 >UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escherichia coli RepID=B7UQG2_ECO27 Length = 117 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 64/110 (58%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI +L+ WGAW + + W IA +K ++ KSR QC +D+ II + RL++ Sbjct: 6 DICEILDDWGAWVVAGNSSIDWQEIADKYKNVVPHGKKSRRQCSNDEGRIIDISILRLER 65 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 ++L+V ++V+G++ ++A + CSDG I KRLQKA G + G + Sbjct: 66 YKQQEYELIVAHFVIGLSLRAIAKQQGCSDGTIRKRLQKALGFLTGYIAI 115 >UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enterobacteriaceae RepID=D2U0V3_9ENTR Length = 142 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 2 RDIQMVLERWGAW-AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RDI+ +L WG W A N + V+W +A+GF + SR C D D ++I C++RL Sbjct: 3 RDIEKILLHWGGWCAGNPYASVSWLPVASGFNRFMP-FSTSRLSCSDADGLVIDVCVSRL 61 Query: 61 KKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + DYY+ G++ ++A K + + KR+Q AEG + G L LDI+L++ Sbjct: 62 NTVGMARELSYIEDYYIRGISKRAIARKFAVREDEVRKRMQIAEGFVLGCLETLDIQLDI 121 Query: 120 DIVVN 124 D + Sbjct: 122 DTLYK 126 >UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9ZMR7_ECOLX Length = 162 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 7 VLERWGAWAANNHEDVTWSSIAAGFKGLI-TSKVKSRPQCCDDDAMIICGCMARLKKNNS 65 LE WGAW + + SS+ A F + +V +RP C DDD M+I + + + Sbjct: 19 WLELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDK 78 Query: 66 DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNN 125 +L+ YY G + ++A + S K L + G I+ R E+D ++N Sbjct: 79 KAFGILLSYYAHGSSKHAIAS-YYHSVARPRKMLCRGGGRIQK-PSLATCRREVDEILNA 136 Query: 126 S 126 S Sbjct: 137 S 137 >UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23 n=4 Tax=Enterobacteriaceae RepID=D1P374_9ENTR Length = 176 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVK-SRPQCCDDDAMIICGCMARLKK 62 +Q L R+GAW + + SS+ A F + + RP C DDD ++I + ++ Sbjct: 21 LQNWLARFGAWVYSGRLEKRQSSMIAEFMATVERRSYPDRPTCSDDDGLLIHDVVDQIYH 80 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 ++ +L+ YV + ++A + + ++ + + R E++++ Sbjct: 81 LDTIAFKMLLSRYVYCASDRAIASSYYENC-EPRIMPRRNGLLRKRKPSISTCRREVEVI 139 Query: 123 VNNS 126 + ++ Sbjct: 140 LKST 143 >UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mirabilis RepID=C2LFC9_PROMI Length = 127 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 2/126 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M+ I ++E WG+W NN+ + ++ + + +VK R C D +I+ CM++L Sbjct: 1 MQKISKLMEAWGSWVVNNNLYIN--TLTINKRENVPIRVKLRKACTDRQGIIVSVCMSKL 58 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KN+ ++LLVDYYV G TF+ LA H CSD YIGK+L+KAEGI+EGML+ ++ ++ Sbjct: 59 LKNHKKDYELLVDYYVFGQTFIQLAQAHRCSDTYIGKKLKKAEGIVEGMLIMAELIFIIE 118 Query: 121 IVVNNS 126 N++ Sbjct: 119 KNENST 124 >UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BH46_PHOAA Length = 174 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLI-TSKVKSRPQCCDDDAMIICGCMARLKK 62 I L WGAW + ++ F + S K+R C DDD M+I + + Sbjct: 28 IDSWLSLWGAWVYSGRIGKCQINMIYKFMVSVKPSNNKTRQMCNDDDGMLISRVVDSVMF 87 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 + + +L+ YY G + +S+A + K + ++ G ++ R E+D + Sbjct: 88 IDKKAYGILLSYYAHGASKLSIAS-YYHRVANPRKMMTRSGGRLKK-PSRGTCRREVDEI 145 Query: 123 VNNSN 127 +N S Sbjct: 146 LNAST 150 >UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0S8S0_ACIJO Length = 136 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 5/124 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQ--CCDDDAMIICGC 56 R +Q L +WG WA + N ++T++S G L + S Q DD + I Sbjct: 12 RMMQNELAQWGKWARHASYNPSELTYTSPTYGLMRLKEGQKSSGIQVMLDDDALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + +L+ + DL+ + +Y+ G LA K I K L AE ++ L L + Sbjct: 72 VTQLRFSRPDLYQWIEFHYLKGYPIAVLASKTKVDRRNIDKFLLAAETWLDSRLDFLLCQ 131 Query: 117 LEMD 120 L+ D Sbjct: 132 LKKD 135 >UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemophilus influenzae RepID=Q4QKY2_HAEI8 Length = 121 Score = 96.2 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 3/115 (2%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI++ R+G WA + + +I + P D+ AM I ++ Sbjct: 8 DIKLTARRYGKWAREG-VGINYPAIQPFLRKSTPDHG--IPMLDDETAMRIHDATLIMRN 64 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 +L+ + + YV ++ + + S I L A ++ +L Sbjct: 65 VTPELYQVFMLRYVSNLSQGDVGREMRVSVPTIKSYLYAAHQSLKLLLTQNKCIF 119 >UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteurellaceae RepID=B0QXB5_HAEPR Length = 121 Score = 93.5 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 3/117 (2%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRP--QCCDDDAMIICGCMARL 60 D++ VL WG + + ++ + + + K R + DD + + L Sbjct: 4 DVKRVLMLWGGYVRFTDC-KGYPTMQSFMRESPEMRTKRRYLARLDDDTLEKVDIQIRYL 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 +++ DLL YV G + K S G L+ AE +EG L+ I L Sbjct: 63 EQHFPKQFDLLFFRYVCGYEPNQVWRKLSLSKGSYENELRLAERFVEGALVGSQISL 119 >UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNN9_ACTSZ Length = 116 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 + + R+G W + + + G KG +K P DD+ M+I + +K+ Sbjct: 2 NFKAKFIRFGYWGNS-RLETDYPVATVGIKGADRTKPYLDP-LSDDEGMLIDKGLLLMKQ 59 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 N D + + YV + S + L +AE + G L+ ++ Sbjct: 60 INFDQFHVFMLTYVKRYDRADICHFKNISLKHYYNLLHEAESFLIGYLLRGEVVF 114 >UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2TX54_9ENTR Length = 115 Score = 90.4 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Query: 2 RDIQMVLERWGAWAAN--NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R ++ +LE WG W+ + E SSIA RP D++ I+ +A Sbjct: 3 RHVKDLLEAWGNWSMSRIGTEYKGMSSIA------PVKFDDDRPWLSDEEGEIVDKAVAG 56 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 LK+ + D ++++ +Y ++ +A YI + +AE I G + L Sbjct: 57 LKRYDIDGYNIICLHYQHHISCRMIAKNWKKRPDYITAYMGRAESYIAGTVHTL 110 >UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AB307-0294 RepID=B7GXQ5_ACIB3 Length = 132 Score = 90.4 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQ--CCDDDAMIICGC 56 R +Q L +WG WA N N ++ + S + G L Q D+ + I Sbjct: 12 RMMQNELAQWGKWARNASFNPSELIYKSPSLGLMRLKEGFKSKGIQVTLNDEALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + +LK + DL+ + +Y+ G LA I K L AE ++ L Sbjct: 72 VMQLKLSRPDLYQWIEFHYLKGYPVAVLATHTKVDRRNIDKYLLAAETWLDSRLE 126 >UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root RepID=A5UER2_HAEIG Length = 122 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 2/115 (1%) Query: 4 IQMVLERWGA-WAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 ++ VLE+WG W + + S L T + DD+ + I + L + Sbjct: 5 VERVLEKWGNCWGR-DRIGTEYPSTTISIPVLPTVRKAHIRFLTDDECLKIEEQIMNLHE 63 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 ++ + +L+ YV + S + + K ++G I+ Sbjct: 64 DSLLQYQILMALYVQQANERDICTALHISPACMYRERAKGVRFLKGAFTGAKIKF 118 >UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseudomonas phage PAJU2 RepID=B5WZY8_BPPAJ Length = 124 Score = 89.2 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 1/114 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RD + +L +WG W S + A + + + DDDAM+I G +AR+ Sbjct: 3 RDAEELLTQWGKWVWQETGVPRCGSPMLAIMRDNVAMEQCLSASISDDDAMLIDGIIARM 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++ + + YY MT + + + + L +E +L + Sbjct: 63 GRRDEEMANCVRVYYATEMTMQQVGKLLNLNRLKVRELLIAGRCYVEAVLDMRE 116 >UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=B7V4N4_PSEA8 Length = 124 Score = 88.8 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 4 IQMVLERWGAWAANNHE-DVTWSSIAAGFKGLITSKVK---SRPQCCDDDAMIICGCMAR 59 ++ ++E++G W +++ S + A K ++ + P DD A+ + +AR Sbjct: 6 LEFLMEQYGLWVWSDNGTPRGSSPMLALMKRNPANEKRFAAVAPCISDDRALQVDRFLAR 65 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 L + D L+ Y++ GM++ + + S ++ + + + Sbjct: 66 LYDEDPDAIRSLILYFIHGMSYRDIQDRMGISYADARMLVRAGLSALLACFVMEE 120 >UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudomonas RepID=B1J5L6_PSEPW Length = 129 Score = 88.1 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRP-QCCDDDAMIICGCMARL 60 D + +LE+WG W + + S + A + + S+ +R DD A+II G +ARL Sbjct: 13 DTEYMLEQWGWWRMSEMGVPRYVSPLYALMRDNVPSEGGARQHVITDDLALIIDGAVARL 72 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 K N + D + YY M + + S+ + ++ I+ L Sbjct: 73 TKRNQQMGDFVWAYYGSKHPAMRVGREAGMSERKAREIIKAGVAWIDCALE 123 >UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseudomonas putida KT2440 RepID=Q88ML3_PSEPK Length = 113 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 17/123 (13%) Query: 1 MRDIQM----VLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGC 56 M +++ +LE WG W +S P DDDA+ I Sbjct: 1 MSNVEKSAEYLLEHWGRWVVLGSGVSCCAS---------RENTILDPMITDDDALFIDRL 51 Query: 57 MARLKKNNSDLHDLLVDYYVVG-MTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 + RL K + +++ YY + + K + + + I+G A+DI Sbjct: 52 VGRLSKRYPECGQVIIKYYTSRDTSLRDVGKKLGFGEEKTRQLWKAGVAWIDG---AIDI 108 Query: 116 RLE 118 R E Sbjct: 109 RRE 111 >UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellaceae RepID=C6AM41_AGGAN Length = 168 Score = 83.1 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 2/115 (1%) Query: 11 WGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR-LKKNNSDLHD 69 WGAW D +I A + S P C D+ M+I + + KN+ LH Sbjct: 24 WGAWIRLGRLDKPEFNIIAKLMKSVIPADPSEPVCSDEVGMMISELIEQFFFKNDRTLHY 83 Query: 70 LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVN 124 ++ YYV T +A K + G + + + I + ++ ++ + Sbjct: 84 IVFSYYVNKNTINRIAVKLRENCGEMKMQPCAGKSDI-RIPSLKTVKRNVEKELK 137 >UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannheimia haemolytica RepID=A7JW96_PASHA Length = 157 Score = 83.1 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVK--SRPQCCDDDAMIICGCMARLK 61 I+ +L WGAW + + ++ SR C D +I + Sbjct: 19 IEELLRLWGAWEFGGLDLESRVNMIYRLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVT 78 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDI 121 K + L D+L Y G + +A + D K + E I + A I ++ Sbjct: 79 KRDVMLADILKQKYWFGRSERQIAIYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILE 138 Query: 122 VVNNSN 127 +S+ Sbjct: 139 SKISSS 144 >UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW5_DICNV Length = 118 Score = 82.3 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKN 63 I+ +L WG W+ + A F + D+ I + L+ N Sbjct: 3 IEELLVAWGEWSRKDVLPARPRCFIAAFCRRSARDADDSVELDDEACEQINEGLMVLRGN 62 Query: 64 NSDLHDLLVDYYVVG-MTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + +HD+L+ Y+ ++A +H S+ + ++ +EG L Sbjct: 63 HQRIHDVLISRYLYNEYNDKAVAKRHGISESTVKDYRRRGHLFLEGWLC 111 >UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A7FBC6_ACIBT Length = 166 Score = 82.3 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query: 4 IQMVLERWGAWAANNHEDVT---WSSIAAGFKGLI----TSKVKSRPQC--CDDDAMIIC 54 I+ LE++GAW ++ + +++ + ++ +S PQC D+A + Sbjct: 19 IENWLEQFGAWINEDNAETYLGTRNTLTYLIDSVEGVKRDARKRSLPQCKISTDEARAVS 78 Query: 55 GCMARLKKNN----SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G + L+ N + D +V YYV G++ ++A CS + + L+ I G Sbjct: 79 GLLRDLRMNPNPTLQEWLDFVVLYYVHGLSEETIADISKCSRNAVRQDLKCGIAYIVGQR 138 Query: 111 MALDIRL 117 L +L Sbjct: 139 NTLRSKL 145 >UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Mannheimia haemolytica serotype A2 RepID=UPI0001BCFD6E Length = 146 Score = 81.5 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 28/142 (19%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR--PQCCDDDAMIICGCMARL 60 DI+ VL WG++ + ++ A + + K R P+ DD + + +L Sbjct: 4 DIKGVLNLWGSFVRFTDC-KGYPTMQAFMRESPQEREKQRYLPRLDDDTLAKVDRQIRKL 62 Query: 61 --------------KKNNSD-----------LHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 K N+ +L YV G+ + K S G Sbjct: 63 DPAGKAKAYLANLAKPNDKREELESLESDELQFAILYLRYVAGLENKPIWQKLSLSKGAF 122 Query: 96 GKRLQKAEGIIEGMLMALDIRL 117 L+ AE +EG+L+ +IRL Sbjct: 123 ENELRLAERFVEGVLIGSEIRL 144 >UniRef50_Q0I4J0 Putative uncharacterized protein n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4J0_HAES1 Length = 134 Score = 81.5 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 17/131 (12%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQ--CCDDDAMIICGCMA 58 + D + +WG WA + SI+ + +D AM C+ Sbjct: 5 LNDFKKKCRQWGYWA-TPRIGTEYPSISPSIP--VPQDKYCGKVDPINEDLAMEFERCVL 61 Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMS------------LAGKHCCSDGYIGKRLQKAEGII 106 ++K +L+D+ + YV + + + S+ K L AE + Sbjct: 62 IMQKVTRELYDVFMVTYVYRLPLRNEYDRRRILVRKGICETLDISETTYKKYLYTAEISL 121 Query: 107 EGMLMALDIRL 117 + ML Sbjct: 122 KLMLSQNRCIF 132 >UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI000045D91D Length = 125 Score = 78.8 bits (193), Expect = 4e-14, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTWSS-IAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 DI L RWG A + + A+ + K DDD + + G LK Sbjct: 5 DIDATLFRWGRHAKS-RIGTEFPCKCASWVADSQSKKHYHIDLTTDDDLIEMDGITKNLK 63 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + + +L+ YV+ L S + + L A+ + G ++A ++ Sbjct: 64 QYDEQAYYVLLGNYVMRYDEKQLVKDLDISKTTLYRSLTIAKSFVFGAVIAKNLS 118 >UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acinetobacter baumannii RepID=B0VTT6_ACIBS Length = 145 Score = 78.0 bits (191), Expect = 7e-14, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 12/129 (9%) Query: 6 MVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR-----PQCCDDDAMIICGCMARL 60 LE++G W + V+ + +A T++++S + D +A+ + +A + Sbjct: 19 QWLEQYGLWVRSTKSKVSANPLACLIDQNDTTRIRSSKVSMPCEIEDYEAVEVSKLLAAM 78 Query: 61 KKNNSDLHD----LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + LL+ Y ++ ++A H + K + K ++G + AL Sbjct: 79 HNDEREFLQERAWLLILKYENDWSYRTIANTHGVGKDTVRKEIDKGLAYLDGKIEALA-- 136 Query: 117 LEMDIVVNN 125 E D + Sbjct: 137 -EFDNEKKS 144 >UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8A2_MAGSM Length = 144 Score = 77.7 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 2/107 (1%) Query: 6 MVLERWGAWAANNHEDVTWSSIAAGFKGLITSK--VKSRPQCCDDDAMIICGCMARLKKN 63 +L+ W W+ + + + + + ++++ ++++ K Sbjct: 17 ELLQEWARWSRSGMSSQNPITSTQLLMRRAAGHVGRSLKYENSEQQSLLVDCVISKMAKI 76 Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 LL ++Y+ +A + S G + +AEG+ EG Sbjct: 77 FPHEVTLLQEFYLGKKGMRIIARERVFSYGKVQTLRSRAEGLFEGWF 123 >UniRef50_Q021X5 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021X5_SOLUE Length = 196 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 5/101 (4%) Query: 18 NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVV 77 S+IA + P D + + + RL + + ++ +Y Sbjct: 98 GAAKRGGSAIAVTLDETVVPSSGRGP-----DVLELDEALDRLAQRDERKAKVIELHYFG 152 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 GMT +AG + + + L+ E + L D Sbjct: 153 GMTREEIAGAMNLTVATVKRDLRLGEAWLRCHLSGGDSGRN 193 >UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALN5_DESPS Length = 126 Score = 76.5 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 2/113 (1%) Query: 1 MRDIQMVLERWGAWAA-NNHEDVTWSSIAAGFKGLITSKVKSRP-QCCDDDAMIICGCMA 58 M I L + W + + + +A + +P + D++AM+I +A Sbjct: 1 MEFISEKLTNYALWLRVSPVPHLGYGRLAISCCWQDYPAYELQPVEISDEEAMLIDTAIA 60 Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 RL++ + + + L+ YY+ +A + + + + E + L Sbjct: 61 RLRQRKASVAEALMVYYLSKENTSYVARELGMDRRKVTQLVSMGESWVAAWLE 113 >UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SI66_HAHCH Length = 128 Score = 75.0 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 5/108 (4%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKN 63 + L R+G W + + DD A+I+ +A L + Sbjct: 10 TRDWLVRYGRWVRAGGVLPRFERV-----ETCLDDYDGSELLTDDQALIVDKALALLSRV 64 Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + Y+ +A S G + L+ E I+ G+L Sbjct: 65 QPFEGKAIKWAYIDRREIRVIARDLGRSYGAARELLRMGECIMSGLLQ 112 >UniRef50_B3H0X4 Putative uncharacterized protein n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H0X4_ACTP7 Length = 161 Score = 74.6 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 6/105 (5%) Query: 5 QMVLERWGAWAANNHEDVTWSSIAAGFKGLIT--SKVKSRPQCCDDDAMIICGCMARLKK 62 + V + +GAW + + ++ F + K+ RP C D M+I + K Sbjct: 20 EEVFKMYGAWEFSGLDRDKRVNMIYKFMRSVEAIDKLGMRPVCNDQLGMLINEILTVRTK 79 Query: 63 NNSD----LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + + D Y G + +A D + E Sbjct: 80 HAKGDTVLMRDFFKQKYWFGRSERQIAMYMQKRDDEGKCLRRWQE 124 >UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPC2_HAHCH Length = 118 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 43/111 (38%), Gaps = 4/111 (3%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M + +LE+W W+ + + +SS + + P D +A + +++L Sbjct: 5 MNETPWLLEQWAQWSKMD-ASLGYSSSTPFSR--LNGSATRSPVITDQEAAAVDLAVSKL 61 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKH-CCSDGYIGKRLQKAEGIIEGML 110 + + ++ +++ YY+ G + + ++ I+ L Sbjct: 62 RTRDEEMGEVVRLYYMAGENLSYVVRRMPKLDRRKADLLVKSGVAWIDATL 112 >UniRef50_D0S041 Putative uncharacterized protein n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S041_ACICA Length = 170 Score = 72.3 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 26/130 (20%) Query: 4 IQMVLERWGAWAANNHEDV----------------------TWSSIAAGFKGLITSKVKS 41 + + GAW + E + + S L T + + Sbjct: 19 FEEWCRQLGAWLNGDTETMVKVVKTMPTKRITQKQREKLMAMYMSDENLKDRLCTRRKGT 78 Query: 42 RPQCCDDDAMIICGCMARLKKNN----SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGK 97 Q D++A I + L+ + + + +YV+G + +A I + Sbjct: 79 CCQLNDNEARAIHRLILDLQSIDDEVLQEWIGAIWWHYVMGESIRDIAKSSDTYGSQIQQ 138 Query: 98 RLQKAEGIIE 107 ++ I+ Sbjct: 139 DIKCGLAFIK 148 >UniRef50_Q0C0A3 ECF sigma factor family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C0A3_HYPNA Length = 241 Score = 72.3 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D+ + + + RL K N L +++ + G T + A +D I + KA Sbjct: 158 SDERLLELDDALTRLSKLNPRLAEVVELRFFGGYTEVQAADILGVTDRTIRRDWIKARAW 217 Query: 106 IEGMLMALDIR 116 + L + I Sbjct: 218 LFRELSGVAIE 228 >UniRef50_A3ZZC0 Extracytoplasmic sigma factor ECF-like protein n=6 Tax=Planctomycetaceae RepID=A3ZZC0_9PLAN Length = 189 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 10/97 (10%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMI----------ICGCMARLKKNNSDLHDLLVDYYVV 77 A K L + R + DDDA+I + +++L +L L+ Y Sbjct: 91 ARRRKSLKRGGDRDRYEILDDDAVIDSQNVDELLDLDAALSKLANEEPELAKLVELRYFA 150 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 G++ A S + + A + L + Sbjct: 151 GLSVDQSAQVLGVSPRTVKRNWAFARAWLGRELHLEE 187 >UniRef50_A3I0X2 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I0X2_9SPHI Length = 179 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 24/65 (36%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 ++ + + + RLK N ++ ++ G +A S + + + A+ Sbjct: 113 TPEEVLHLNEALTRLKAINHRHCRVVEFHFFGGYKHEEIAQMMGVSIDTVRRDWRLAKAW 172 Query: 106 IEGML 110 + L Sbjct: 173 LSKEL 177 >UniRef50_B1ZSA5 RNA polymerase, sigma-24 subunit, ECF subfamily n=10 Tax=Bacteria RepID=B1ZSA5_OPITP Length = 193 Score = 69.6 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 30/86 (34%) Query: 29 AGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKH 88 A T + P+ D++ ++I + L ++S +L+ Y G+T A Sbjct: 105 AKVSASATGFDVAAPEADDEELLLINEALEALAAHDSRKAELVKQKYFAGLTLEEAAEVL 164 Query: 89 CCSDGYIGKRLQKAEGIIEGMLMALD 114 S + A + + L Sbjct: 165 GISVRTAKRDWAYARAWLFNEIQRLR 190 >UniRef50_C1A7M9 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7M9_GEMAT Length = 193 Score = 69.6 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 9/85 (10%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 32 KGLITSKVKSRPQCCD------DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLA 85 + + + D +D + + + +L++ + ++ + VG++ +A Sbjct: 106 QRSVPLEAAETVSLDDLATGGAEDVLAVHDALEQLERLDPRQARIVELRFFVGLSLEEIA 165 Query: 86 GKHCCSDGYIGKRLQKAEGIIEGML 110 S + + A + L Sbjct: 166 ELLDISPATVSRDWAMARAWLRVQL 190 >UniRef50_Q01WD0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01WD0_SOLUE Length = 196 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 23/61 (37%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + + RL K + ++ Y G+ +A + S + + A+ + G L Sbjct: 127 LELDQALDRLAKIDPRQCRVVELRYFAGLDEEEIALQLGISGRTVKRDWAMAKAWLYGEL 186 Query: 111 M 111 Sbjct: 187 Q 187 >UniRef50_Q024W7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024W7_SOLUE Length = 161 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 10/94 (10%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMI----------ICGCMARLKKNNSDLHDLLVDYYVV 77 AA +G D A++ + + K ++ Y Sbjct: 57 AARLRGSRRQGGIPIKVNLDQSALLSPAPDRALLALDEALTAFSKLAPRQAKVVELRYFG 116 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 G+T + S + Q A+ + L Sbjct: 117 GLTDEEIVSALNISPRTARRDWQFAKAWLLRELS 150 >UniRef50_C1A6L8 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6L8_GEMAT Length = 202 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 21/131 (16%) Query: 5 QMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCC------------------ 46 + L+ AA N + + IAA + + R Q Sbjct: 72 EAWLKLSATPAAANTSPLHFKRIAARAMRQVLVEAARRRQATKRGGREVVHVTLDQQVPR 131 Query: 47 ---DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 DD + + + RL + L+ Y G+ + A S+ + + A Sbjct: 132 ADESDDVIALHEALDRLALLSPRQAQLVESRYFGGLDVQAAAELLGISESTALRDWRLAR 191 Query: 104 GIIEGMLMALD 114 + L A Sbjct: 192 AWLARELQASR 202 >UniRef50_Q01ZV6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01ZV6_SOLUE Length = 205 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 29/83 (34%) Query: 32 KGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCS 91 + + + D+ +++ + RL + L +++ Y G+T A S Sbjct: 116 RRVPLDDARDGFTSDPDEFLLLHQALDRLSDYDFSLANVIELRYFAGLTLEETAEIVGIS 175 Query: 92 DGYIGKRLQKAEGIIEGMLMALD 114 +R + AE + + Sbjct: 176 VPTASRRQRMAEAWLSREISVKT 198 >UniRef50_B0VKH6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii SDF RepID=B0VKH6_ACIBS Length = 165 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 26/130 (20%) Query: 4 IQMVLERWGAWAANNH----------------------EDVTWSSIAAGFKGLITSKVKS 41 + + GAW + + S L T + + Sbjct: 21 FEEWCRQLGAWLNGDTEIMVKIVKTMPTKRITQKQREKLIAMYMSDENLKDRLCTRRKGT 80 Query: 42 RPQCCDDDAMIICGCMARLK----KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGK 97 Q D++A + + +K D + ++V+G + +A + S I + Sbjct: 81 CCQLNDNEARALHRLIIDIKLIEDHILQDWISAIWSHHVMGNSLRDIAQSNDTSVNQIRQ 140 Query: 98 RLQKAEGIIE 107 L+ I+ Sbjct: 141 DLKCGLAYIK 150 >UniRef50_D0LUR6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUR6_HALO1 Length = 171 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 25/68 (36%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D +++ + RL+ + ++ G+T +A S + ++A + Sbjct: 104 DLLVLDEVLTRLEALDPRQARIVEMRVFGGLTVSEVARTLGVSTRTVEYDWRQARAWMRL 163 Query: 109 MLMALDIR 116 L D+ Sbjct: 164 ELQRSDVS 171 >UniRef50_C1ABY3 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABY3_GEMAT Length = 200 Score = 67.3 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D + + + L + L ++ Y G+T + A ++ + + KA G + Sbjct: 116 DGTLVALDDALDELARLAPRLAQVVECRYFGGLTELETAEALGVTERTVRRDWVKARGWL 175 Query: 107 EGML 110 G L Sbjct: 176 YGAL 179 >UniRef50_UPI0001744968 hypothetical protein VspiD_19055 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744968 Length = 197 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 24/123 (19%) Query: 13 AWAANNHEDVTWSSIAAGF-------KGLITSKVKSR----PQCCDDDAM---------- 51 AW W S A F + ++ + +++ Q DD A+ Sbjct: 69 AWLRLATSQSEWDSQAHFFGAAAEAMRRILVDRARTKSAVKRQLTDDPALAQSEEPAEGD 128 Query: 52 ---IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 +I + RL+K ++ +++ + G T +A S + ++ A+ + Sbjct: 129 HILLIHEALTRLEKEDAHAARIVMLKFFSGSTSEEIASMLGHSLRTVERQWTFAKARLYQ 188 Query: 109 MLM 111 M+ Sbjct: 189 MIQ 191 >UniRef50_A9ENA8 ECF-family RNA polymerase sigma factor n=2 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ENA8_SORC5 Length = 185 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D + + + RL+ + ++V Y G++ A + + + + A + Sbjct: 118 EDVLAVDAALKRLEGAHPRKAQVVVMRYFGGLSEEESAEALGVTARTVERDWRFARAFLH 177 Query: 108 GMLMALD 114 L D Sbjct: 178 EALEQKD 184 >UniRef50_C1AC15 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AC15_GEMAT Length = 190 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 29 AGFKGLITSKVKSRPQCCDDDA-----MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMS 83 A +G + +V Q DDA + I + L ++ L ++ + G++ Sbjct: 98 ALKRGGVRQRVSLDEQAVADDAEPEQLLEIDDALHHLATIDARLARVVELRFFGGLSEEE 157 Query: 84 LAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 +A + + + KA ++ L D Sbjct: 158 IAEALDVTVRTVRRDWVKARMLLRQSLGVAD 188 >UniRef50_D0T5A5 Putative uncharacterized protein n=2 Tax=Acinetobacter radioresistens RepID=D0T5A5_ACIRA Length = 159 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 24/130 (18%) Query: 4 IQMVLERWGAWAANNHEDVT--WSSI-------------AAGFK-----GLITSKVKSRP 43 + ++GAW N E + S+ A + + Sbjct: 19 TEDWFRQFGAWMNGNTEVKRLVYKSLPTRKLNQKQREQLIAKYMNDESFREPVVRRGVTC 78 Query: 44 QCCDDDAMIICGCMARLKKNN----SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRL 99 Q D++A + +++ + ++ + Y+ +A S I + + Sbjct: 79 QITDNEARAFQRIILDIRQIESEPLQEWMGVIWEVYIENRRLREVATLFDTSTIQIRQDM 138 Query: 100 QKAEGIIEGM 109 + A IEG Sbjct: 139 KCALAFIEGR 148 >UniRef50_B9TKF6 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKF6_RICCO Length = 90 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D+D + + + L + L ++ Y G+ +A ++ + + QKA + Sbjct: 24 TDEDILRVHEALEELAAVDQRLAQVVEMRYFGGLLETEIAEALGVTERTVQRDWQKARIL 83 Query: 106 IEGMLMA 112 + L Sbjct: 84 LSMSLKT 90 >UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W3_HAMD5 Length = 92 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 44 QCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 D++A I+ +ARLK +S +D++V Y ++ ++ I L ++E Sbjct: 1 MLPDNEAQIVDRAVARLKHFDSLGYDIIVACYRGKVSCRAIGRALKRDHKSISGYLTRSE 60 Query: 104 GIIEGMLMAL 113 I G + AL Sbjct: 61 AYIAGQVDAL 70 >UniRef50_Q7UIV2 Similar to extracytoplasmic sigma factor ECF n=1 Tax=Rhodopirellula baltica RepID=Q7UIV2_RHOBA Length = 188 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 10/93 (10%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMI----------ICGCMARLKKNNSDLHDLLVDYYVV 77 A + L + R + +DDA+I + + + +++ ++ L+ Y Sbjct: 90 ARRRQSLKRGGDRKRFEIAEDDAIIHFDNAEELLDLNDALTKFERSEPEIAKLVELRYFA 149 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G++ A S + + A + L Sbjct: 150 GLSVDESAEALGISPRTVKRNWAFARAWLGREL 182 >UniRef50_Q7UJC0 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7UJC0_RHOBA Length = 216 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 22/64 (34%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 DDD + + + +L + ++ + G+ +A + + K A + Sbjct: 119 DDDVVALDELLLQLASLSPRQARVVELRFFGGLGMKEIAAELNLGLRTVEKEWAMARAWM 178 Query: 107 EGML 110 L Sbjct: 179 RREL 182 >UniRef50_B8F4F6 Putative anti-termination protein Q, phage associated n=4 Tax=Pasteurellaceae RepID=B8F4F6_HAEPS Length = 125 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 3/116 (2%) Query: 4 IQMVLERW-GAWAANNHEDVTWSSIAAGFKG-LITSKVKSRPQCCDDDAMIICGCMARLK 61 I +L W WA ++ + S+ + + S + ++ + + + L Sbjct: 8 IDDILNVWVRRWA-SHRGCRGYPSLQSFMPEATVKITKYSIDELSEEHYLKLDEAVMTLH 66 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 N + + +L+ ++ G ++ + S RL+ A +EG + + Sbjct: 67 DLNLEAYQVLMAVFLQGQDKKNICLEMHISPRTYDNRLRTARDFMEGAVFGSGLIR 122 >UniRef50_C1ZEB5 RNA polymerase, sigma subunit, ECF family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEB5_PLALI Length = 221 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 20/64 (31%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D + + + +L +L+ Y G+T A S + + + Sbjct: 150 EDLLALDEALTKLADIKPQGAELVQLLYFGGLTLAEAAETLDISVRTASRLWAYSRAWLR 209 Query: 108 GMLM 111 L Sbjct: 210 RELA 213 >UniRef50_Q02A05 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Bacteria RepID=Q02A05_SOLUE Length = 194 Score = 62.3 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 22/68 (32%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D + + + L + ++ Y G++ A S + + A+ + Sbjct: 127 DLLELNRSLELLTSLDPQQGRVVELRYFGGLSVDETAEVLGISPATVKREWSTAKLWLLQ 186 Query: 109 MLMALDIR 116 + I+ Sbjct: 187 HMEGSSIQ 194 >UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae RepID=B7UQ12_ECO27 Length = 180 Score = 61.5 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 41/144 (28%) Query: 4 IQMVLERWGAWAANN------------------------------HEDVTWSSIAAGFKG 33 IQ L WG W+ + + A + Sbjct: 24 IQGKLRMWGRWSYIGGGKPGNMFNQLLASKKLTKTAVNEALRRIRESGIDKPELEAFLRE 83 Query: 34 LITSKVKSRPQ-CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVV-GMTFMSLAGKHCCS 91 +I + KS C D +A+ I G +++ L D+L Y GM+ +A Sbjct: 84 MIAGRQKSWLSHCTDAEALRIDGVISKALARYPGLIDILRQRYEGRGMSKRKMAELLNEV 143 Query: 92 DGY---------IGKRLQKAEGII 106 I L+ AE I+ Sbjct: 144 HPEWCYATCRNRIDMWLRIAEFIL 167 >UniRef50_UPI00016C3CD3 WD-40 repeat protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3CD3 Length = 1112 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 10/97 (10%) Query: 20 EDVTWSSIAAGFKGLITSKVKSRPQCCDDDA-----MIICGCMARLKKNNSDLHDL-LVD 73 S A K ++ + P DD I +ARL +++ L L+ Sbjct: 97 AGKIRRSAARRQKRESANRERPAPSPADDTLWAELRERIDAELARL----PEVYRLPLLL 152 Query: 74 YYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 YV G+++ A + CS G + RL++ + G L Sbjct: 153 CYVQGLSYADAARRLGCSPGALRGRLERGREQLRGRL 189 >UniRef50_Q01QI6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QI6_SOLUE Length = 190 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%) Query: 30 GFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHC 89 G + + + Q D +I+ + RL + + L+ Y G+T A Sbjct: 105 GKQQVPLDDRAASEQPHLDRILIVDEALNRLSEMDPRQGRLVELMYFGGLTAEEAAEATG 164 Query: 90 CSDGYIGKRLQKAEGIIEGMLMAL 113 S + + A ++ L Sbjct: 165 VSVRTVKRDWSSARAWLQSQLRRS 188 >UniRef50_D0LMI5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMI5_HALO1 Length = 179 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D +++ ++RL + ++ GMT +A + + K ++A I Sbjct: 112 DLLVLDDILSRLDELEPRQARIVELRVFAGMTVPEVARVLGVAVTTVEKAWRRARAWIRM 171 Query: 109 MLMALD 114 L D Sbjct: 172 ELHGAD 177 >UniRef50_Q029S3 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Bacteria RepID=Q029S3_SOLUE Length = 197 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D D + + + RL + + ++ + G++ A S I + Q A + Sbjct: 126 DVDLLGLNDALDRLAELDERQGRIVELRFFAGLSIEETAEVMNLSPASIKREWQTARAWL 185 Query: 107 EGMLMA 112 + Sbjct: 186 FREMTR 191 >UniRef50_Q0C1Q3 ECF sigma factor family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1Q3_HYPNA Length = 194 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 ++ + RL + + +++ Y GMT +A S+ I + + A + L Sbjct: 125 VLEKALIRLNVIDEEKAEIVELRYFGGMTLEEIAEIRGVSEATIKRNWRAARAWLLDCL 183 >UniRef50_B5JNN4 RNA polymerase sigma factor, TIGR02999 family n=2 Tax=Bacteria RepID=B5JNN4_9BACT Length = 223 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 28/60 (46%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++ ++I + +LK+ + + ++V + + T +A S+ + +R A+ + Sbjct: 154 EEKVLLIDEALEQLKEKDPEQARVVVLKFFMSNTNAEVADMLRVSERTVERRWAYAKSWL 213 >UniRef50_Q15XA0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15XA0_PSEA6 Length = 191 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 30/85 (35%) Query: 29 AGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKH 88 AG + + K Q D + + ++ L K + ++L + G T +A + Sbjct: 106 AGVRRVTLVDYKYAEQPVSHDVVELDAALSALAKFDKRKAEILELQFFAGSTVSDIAQFY 165 Query: 89 CCSDGYIGKRLQKAEGIIEGMLMAL 113 S I + Q + + L Sbjct: 166 AVSPRTIERDGQFGKAWLHRELSIA 190 >UniRef50_Q2SCP5 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCP5_HAHCH Length = 185 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%) Query: 44 QCCDD----DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRL 99 Q CDD D + + + +L + ++ + GMT +A S + + L Sbjct: 113 QICDDGSQPDLLDLEDILQKLSNVDERKARIVEMSFFGGMTQEEIAEYLQVSLSTVERDL 172 Query: 100 QKAEGIIEGMLMA 112 + A+ + L Sbjct: 173 RFAKAWLVKELKI 185 >UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N1K7_PHOLL Length = 103 Score = 56.9 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M+I + + + +L+ YV ++ ++A KH + +++ + + Sbjct: 1 MLIARVVDHIYHIDRVAFGMLLSRYVYCVSDRAIA-KHYHATVQPRIMIRRNGMLRKRKP 59 Query: 111 MALDIRLEMDIVVNNS 126 R E++ ++ + Sbjct: 60 SMSTCRREVEEILRAT 75 >UniRef50_A6WBB3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WBB3_KINRD Length = 270 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L++ + +LV Y T +A CS G + + + + +L Sbjct: 140 DEAVTALRQLSPRQRAVLVLRYYEDWTEAQIADALNCSTGTVKTQASRGLSRLRQLLDTS 199 Query: 114 D 114 Sbjct: 200 R 200 >UniRef50_A6C669 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=2 Tax=Planctomyces maris DSM 8797 RepID=A6C669_9PLAN Length = 182 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 22/62 (35%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D + + + L K ++ + G+T +A + S + + A+ + Sbjct: 110 DILELNEALETLAKELPRAARIVELKFFGGLTGEEIAEQLDVSLRTVNNDWKYAKAWLYR 169 Query: 109 ML 110 L Sbjct: 170 AL 171 >UniRef50_Q2N5E1 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2N5E1_ERYLH Length = 185 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D + + RL+ +++L +++ Y GMT +A S+ + +R Q A + Sbjct: 117 DLARLNSALVRLEAIDAELMEIVEMRYFGGMTVPEVAEVTGWSEPTVKRRWQVARAWLAD 176 Query: 109 MLM 111 + Sbjct: 177 AMS 179 >UniRef50_P44192 Uncharacterized protein HI1421 n=9 Tax=Haemophilus influenzae RepID=Y1421_HAEIN Length = 92 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 36 TSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 K + RP D+ M I G + ++K +L+D+ V Y+ + S Sbjct: 8 AEKYRMRP-ISDELGMEIDGYLGVIRKVTPELYDVFVLTYIKRWEKQGIWRYLHISRREY 66 Query: 96 GKRLQK 101 RL+ Sbjct: 67 FNRLKT 72 >UniRef50_Q01NG1 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NG1_SOLUE Length = 196 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 26/62 (41%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D + + + RL + ++ ++ + +G+T +A S + + + A+ + Sbjct: 124 DLVELDQALQRLARLDARQGRVVELRFFLGLTEDEIADILDVSPVTVKRDWRIAKAALRI 183 Query: 109 ML 110 L Sbjct: 184 EL 185 >UniRef50_Q01Y10 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Bacteria RepID=Q01Y10_SOLUE Length = 186 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 15/50 (30%) Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + ++ Y G++ A S + + A+ + L Sbjct: 137 NVDPRKARVVELRYFGGLSVEETAEALRISPETAKRDWKMAKAWLLRELA 186 >UniRef50_B1ZRZ7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Verrucomicrobia RepID=B1ZRZ7_OPITP Length = 189 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 30/74 (40%) Query: 33 GLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSD 92 L +V+ ++ ++I + +L+ + + ++V + G T +A ++ Sbjct: 108 RLDIDEVELADTTPEEKVLLINEAVEKLEAQDPERARVVVLKFFGGFTNHEVAASLGVTE 167 Query: 93 GYIGKRLQKAEGII 106 I + A+ + Sbjct: 168 RTIERHWAFAKAWL 181 >UniRef50_C4SVI1 ATP-dependent Zn protease n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SVI1_YERFR Length = 160 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 15/79 (18%) Query: 45 CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 C DD+ +++ + + ++ L +L +Y+ ++A + + Sbjct: 68 CTDDEGLLMDSVVGLVLQSTPGLIGILQQHYIYKKKRYTMAEEMQEAHPE---------- 117 Query: 105 IIEGMLMALDIRLEMDIVV 123 L R +D + Sbjct: 118 -----LSISTCRRRIDAWI 131 >UniRef50_Q01VZ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=root RepID=Q01VZ3_SOLUE Length = 189 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 6/47 (12%), Positives = 15/47 (31%) Query: 65 SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ + G+ +A S + + + A + G L Sbjct: 140 PRKAKVVEMRFFGGLEEKEIARVLDISTDTVQRDWKAARAWLYGQLA 186 >UniRef50_D0LML4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LML4_HALO1 Length = 184 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 20/57 (35%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 +ARL ++ ++ GMT +A S K ++A + G Sbjct: 117 DLLARLAAHHPRQARVVELRVFGGMTVPEVADALEVSLSTAEKDWRQARTWMRGEFE 173 >UniRef50_B6XKQ8 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XKQ8_9ENTR Length = 183 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 45 CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 C D + + ++ + ++ L ++L +Y+ ++ +LA + S I L Sbjct: 97 CSDTEGGKMDKVISAVFAHDQGLLNVLKQHYIYKKSYYALALELHESKPSI--SLSTCRR 154 Query: 105 IIEGMLMALD 114 I+ L + Sbjct: 155 RIKAWLSIAE 164 >UniRef50_D0LGY0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LGY0_HALO1 Length = 174 Score = 52.6 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++ I ++RL++ + ++ + Y G T +A + + +R + A + Sbjct: 106 EEVASITRSLSRLQREYPEHAEIALLRYFAGCTVAEIAELLGIAVRTVERRWRFAAARLR 165 Query: 108 GM 109 Sbjct: 166 TW 167 >UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobacterium nucleatum subsp. polymorphum ATCC 10953 RepID=A5TWC9_FUSNP Length = 150 Score = 49.9 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGK 97 ++ + LK + ++++ YY+ GM +A K + + K Sbjct: 82 LVDSGIGYLKDCHFKHYEIIELYYIKGMKLKQIASKLGINPATVSK 127 >UniRef50_Q0C234 ECF sigma factor family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C234_HYPNA Length = 188 Score = 49.9 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 22/62 (35%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 M + + RL ++ +L ++ + G T A + + +A+ + Sbjct: 121 QLMDVEAALVRLAQHAPELEQIVECRFFAGYTVNETARILGRPVRSVERDWSRAKTYLAA 180 Query: 109 ML 110 L Sbjct: 181 YL 182 >UniRef50_D1BY52 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BY52_XYLCX Length = 172 Score = 49.5 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 9/113 (7%) Query: 13 AWAAN------NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSD 66 AW +E + A L + + DD + + M L + + Sbjct: 55 AWVYATLRNVVGNEYRRRGRVTALVDKLGPMQDLAAAPVAVDDQLTVHAAMEALAEPDR- 113 Query: 67 LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 DLL Y ++ +A C+ + RL +A G ++ L D E+ Sbjct: 114 --DLLRMAYWEDLSAPEIAQILGCTPTAVRIRLTRARGRLKKQLSIDDPEEEV 164 >UniRef50_B4WLA9 Response regulator receiver domain protein n=2 Tax=Synechococcus sp. PCC 7335 RepID=B4WLA9_9SYNE Length = 216 Score = 48.4 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 5/38 (13%), Positives = 15/38 (39%) Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 + ++ Y G++ ++A + SD + + Sbjct: 149 DPKWLKVIELKYQEGLSDQAIARRLGVSDRTVRNYWTR 186 >UniRef50_C8WJ47 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Eggerthella lenta DSM 2243 RepID=C8WJ47_EGGLE Length = 190 Score = 48.4 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 10/92 (10%) Query: 33 GLITSKVKSRPQCCDDD----------AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFM 82 S+ +++P D+ A++ L ++ +YV G + Sbjct: 75 RRTASRHRTQPLPDDETLLPKTPPASAALMANEVWRVLDTLPPKYRAVVHLHYVEGYSTE 134 Query: 83 SLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 +A C + RL++A ++ ++ + Sbjct: 135 EIAEIAKCRPSTVRSRLRRARAQLKTLIEQEE 166 >UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0ATZ3_SYNWW Length = 206 Score = 48.4 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 48 DDAMIICGCMARLK------KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 +D +++ + L+ K + D+++ YY + S+A + I + Q+ Sbjct: 129 EDKLLLSSYIPALQEAVLAAKIKPEEWDIIIAYYAYNESDRSIAVRLKKPINTIKSKRQR 188 Query: 102 AEGIIEGM 109 A ++ Sbjct: 189 AMARLQKK 196 >UniRef50_D1VHA9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Frankia sp. EuI1c RepID=D1VHA9_9ACTO Length = 194 Score = 48.0 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L++ ++V Y +T +A + C G + + + +L A Sbjct: 115 HDLLGALRQLPPRQRAVIVLRYFDDLTEAEIAAQLGCRPGSVKTHAARGMSRLRELLGAS 174 Query: 114 DIRLEM 119 + M Sbjct: 175 TVADRM 180 >UniRef50_C7MS70 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-E family n=2 Tax=Actinomycetales RepID=C7MS70_SACVD Length = 197 Score = 48.0 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L++ ++V Y G++ +A S G + + KA + G L Sbjct: 135 LRELPPKQRAVIVLRYYEGLSEAEIAASLGISPGTVKSQASKALTSLRGKL 185 >UniRef50_A8M0I6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M0I6_SALAI Length = 166 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 14/123 (11%) Query: 5 QMVLERWG-AW--AANNHEDVTW--SSIAAGF----KGLITSKVKSRPQCC--DDDAMII 53 Q L R G AW + V + ++ F + + + P+ D + Sbjct: 43 QETLIRVGLAWPRLRADGNPVGYAQRTMTNLFLNQRRRRRPVPIGTIPEIAREDTALAAV 102 Query: 54 CGCMAR---LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L ++ YV ++ + C+ + +L + + L Sbjct: 103 DSTATVRRILASLPPKQRAVIALRYVADLSDDEIGRLLDCAPATVRSQLSRGLSRLRATL 162 Query: 111 MAL 113 Sbjct: 163 TTE 165 >UniRef50_Q1D268 Putative RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D268_MYXXD Length = 183 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 20/62 (32%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 + + + ++ L L +L Y VG+ + A S + + + Sbjct: 120 EVLELDRALSELDTFQPRLARMLELRYFVGLDLLDTAAVLSVSPVTVKRDWAYVREWLLT 179 Query: 109 ML 110 L Sbjct: 180 RL 181 >UniRef50_B0VNN5 Putative uncharacterized protein n=5 Tax=Acinetobacter RepID=B0VNN5_ACIBS Length = 176 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 47/145 (32%), Gaps = 32/145 (22%) Query: 4 IQMVLERWGAWAA--NNHEDVTWSSIAAGFKG--------------------------LI 35 ++ L ++GAW + + + IA + Sbjct: 19 LEEWLYQFGAWMYSNSGTCGKSINPIAVAMDQAAKKRKQEVKGKEQIMADWLCSDDLIIP 78 Query: 36 TSKVKSRPQCCDDDAMIICGCMARLKKNNS---DLHDLLVDYYVVGMTFMSLAGKHC-CS 91 + + + D++A + + ++ + + D ++D Y+ G ++ + K Sbjct: 79 KGRGRITCEITDNEARAVQRLILDMQGQSEILDEWLDAVIDRYLYGNSWSDMVIKVGRVD 138 Query: 92 DGYIGKRLQKAEGIIEGMLMALDIR 116 + I + A + L A+ R Sbjct: 139 NPTILRTQHDAREDVRCGLAAMHCR 163 >UniRef50_Q01QY6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QY6_SOLUE Length = 187 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 20/63 (31%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 D+ I+ + L + + + G++ +A + +R A + Sbjct: 125 DELAIVEDLLGGLDEVDPQFRTVAELKVFEGLSMEEIAAQLDIPLRTAYRRWTFARTWLA 184 Query: 108 GML 110 L Sbjct: 185 RHL 187 >UniRef50_C7QKN1 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Actinomycetales RepID=C7QKN1_CATAD Length = 239 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 20/121 (16%) Query: 12 GAWAANNHEDVTW------------SSIAAGFKGLITSKVKSRPQCCD----DDAMIICG 55 G W + ++ + + T++ + P D + ++ Sbjct: 119 GLWRRYGDDLTGMENPLGYLRTAVVNNARSVLRRRKTARGYTPPHIPDAASAESVALLSE 178 Query: 56 ----CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + ++K ++LV Y ++ +A S G + + + +L Sbjct: 179 EHREVLEAMQKLPPRQREVLVLRYWSDLSEADIADALGISRGTVKSTASRGLEALGKILK 238 Query: 112 A 112 Sbjct: 239 G 239 >UniRef50_Q7URL7 Similar to RNA polymerase sigma-E factor n=1 Tax=Rhodopirellula baltica RepID=Q7URL7_RHOBA Length = 200 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 7/58 (12%), Positives = 21/58 (36%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + L+ + +++ + G+T +A S + + + A + L Sbjct: 138 LESALEGLEATSPRQREVVELRFFSGLTNEEVAKVLEISVATVERDWRLARAKLFDQL 195 >UniRef50_B5G9W5 RNA polymerase ECF-subfamily sigma factor n=1 Tax=Streptomyces sp. SPB74 RepID=B5G9W5_9ACTO Length = 192 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 A + N D++V Y +G +A + + L++A+ I+ L Sbjct: 128 AAIAALNDRQFDVVVMRYFLGYPTARIARFTGLNPRTVDYHLRRAKEILSRQLGLST 184 >UniRef50_UPI000178967B RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178967B Length = 216 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 +A+ + + L+ DL ++ +Y + +A +G + RL +A I+ Sbjct: 109 EAIELNEAVTHLED---DLRRVIQLHYYRDIPINHIAKMIGIPEGTVKSRLHRARAILAE 165 Query: 109 MLMALDIR 116 L + R Sbjct: 166 RLESSTER 173 >UniRef50_B0C6N2 RNA polymerase sigma-24 subunit n=3 Tax=Cyanobacteria RepID=B0C6N2_ACAM1 Length = 188 Score = 46.5 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + + + ++ Y G++ +A + S G + R++ + G+L Sbjct: 135 MAQIPPEQQQVIELAYFQGLSQSEIAKQTGLSLGTVKTRIRLGLSKLRGILDQS 188 >UniRef50_D1BWE5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BWE5_XYLCX Length = 181 Score = 46.5 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 22/61 (36%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L ++V ++VG++ +A S G I + + +L + Sbjct: 106 DRLVRALATLTPRQRRIVVLRHLVGLSEQEVAHDLGVSLGTIKSTASRGLAQLRQVLESA 165 Query: 114 D 114 D Sbjct: 166 D 166 >UniRef50_B1YHB9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YHB9_EXIS2 Length = 181 Score = 46.5 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 8/100 (8%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 N + + + A I K SR + D + L + D+LV + Sbjct: 80 IRNCYRVLNQQTAVADLIEQIPVKESSREEHLD--------LIDALSHLRKEYRDVLVLF 131 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 Y + +A + + L++ ++ L LD Sbjct: 132 YFHDVPMKEIASFIGITLNTVKTYLRRGREELKKQLGGLD 171 >UniRef50_A7AH11 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AH11_9PORP Length = 195 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 15/123 (12%) Query: 3 DIQMVLERWG-----AWAANNHEDVTWSSI-------AAGFKGLITSKVKSRPQCCDDDA 50 +IQ L +W + + S A + S + D Sbjct: 65 NIQSFLFKWLQNSCLNHIKHQMIVDEYESCVRIAEARIAFWGESTDSNDVLKSVINQDLR 124 Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 II + +L Y ++ +A S + +++A + L Sbjct: 125 EIIELSVNKL---PPKCAQAFRLAYFHDISHKEIAEIMGISPRTVEGHIRQALAFLRKDL 181 Query: 111 MAL 113 L Sbjct: 182 KGL 184 >UniRef50_C8WRE2 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRE2_ALIAD Length = 179 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 DD ++ ++ ++ D+LV YV G+T +A + G + RL + Sbjct: 107 SDDSTLLRADLARAMRAIRAEERDVLVLAYVQGLTLREIAERLQIPLGTVKTRLHRGLRG 166 Query: 106 IEGMLM 111 + L Sbjct: 167 LRQQLA 172 >UniRef50_B8KCE9 DNA-directed RNA polymerase specialized sigma subunit n=3 Tax=Vibrio RepID=B8KCE9_VIBPA Length = 191 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 24/66 (36%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + I+ + + L Y++G+ ++ CS+ I K L+ + ++ Sbjct: 126 EQLFILDRALDSFSVRYPRQSNALKLKYLMGLKNQEISQLLECSNSLIEKDLKFSRSWLQ 185 Query: 108 GMLMAL 113 + Sbjct: 186 ARMTLS 191 >UniRef50_C1ZAF4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZAF4_PLALI Length = 189 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 36 TSKVKSRPQCCDDDAMI--------ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGK 87 ++ D ++ I +ARL + + LL Y G ++ +A Sbjct: 99 ANRQYDEESTPDPLGLLLAKEREKLIQSAIARLLPKDQE---LLTLKYTQGWSYFEIAKH 155 Query: 88 HCCSDGYIGKRLQKAEGIIEGMLMA 112 ++ + +L +A + +L A Sbjct: 156 LGLTESQVTTQLHRARVRLRQLLSA 180 >UniRef50_D0CCC1 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ATCC 19606 RepID=D0CCC1_ACIBA Length = 153 Score = 45.7 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 13/116 (11%) Query: 4 IQMVLERWGAWAANNHE--DVTWSSI-------AAGFKGLITSKVKSRPQCCDDDAMIIC 54 I+ LE++G+W + + SS+ A G +V + D+ A + Sbjct: 25 IEWHLEQYGSWLLLDDHYFSLGESSVLGHLIDTANGVVVDRRQRVAPLCKINDEHADAVA 84 Query: 55 GCMARLKKNN----SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 + L +N +++ +YV + ++A K S+ + + + Sbjct: 85 DMLTHLMQNETTKTKQWMRIVIMFYVEFKSEETIAKKLGVSEFSVARDKMLGMVRL 140 >UniRef50_C0C2S2 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2S2_9CLOT Length = 207 Score = 45.7 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 18/57 (31%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M ++ +++ Y M +A S + + L +E +L Sbjct: 141 EELMEKILSLPPHESQVIIMKYYNEMKLEEIASAMDISRSTVKRYLAHGRASLEKIL 197 >UniRef50_D0M4A3 DNA-directed RNA polymerase specialized sigma subunit n=14 Tax=Vibrionaceae RepID=D0M4A3_VIBSE Length = 190 Score = 45.7 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +I+ + L Y++GM ++ CS I K L+ + ++ Sbjct: 125 EQLIIMDKALDNFSSRYPRQSSALKLKYLMGMKNQEISELLECSASLIEKDLKFSRSWLQ 184 >UniRef50_A8LBJ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Frankia sp. EAN1pec RepID=A8LBJ3_FRASN Length = 176 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 19/57 (33%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L++ ++V Y ++ +A C+ G + + + +L Sbjct: 106 DQLFTALRQLPPRQRAVIVLRYFDDLSETQIATAVGCTPGSVKTHAARGLARLRTVL 162 >UniRef50_A9AW11 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AW11_HERA2 Length = 203 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 L++ + +LV +Y + +A C +G I RL A I++ L I E Sbjct: 137 LERLSPQHRAVLVLHYFHDYSLTEIAEILECPEGTIKSRLFYARKILKEQLYQAAIEGE 195 >UniRef50_Q67QK7 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67QK7_SYMTH Length = 200 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 1/117 (0%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 ++ L R A + S + F + P+ + A + + L + Sbjct: 82 HLKAWLFRVARHRAIDCLRRRRSVVVEAFANQPAERAVH-PEAEAERAWLTEAILDALAE 140 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 ++ + M + +A G + RL + +L A I L++ Sbjct: 141 LPPPYQSVIQMRFFHDMGYREIAECLHIPIGTVKSRLNYGLKGLARILRARRISLDV 197 >UniRef50_Q9KCF6 RNA polymerase sigma factor Y n=2 Tax=Bacillus RepID=Q9KCF6_BACHD Length = 176 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 47 DDDAMIICGCMARLKKNNSDLHDL-LVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D++A + + +L D + + +V +Y T+ +A ++G + R+ +A+ Sbjct: 109 DEEARALHEMIQQLD----DKYKIPIVLHYFHDQTYQEIAQVLGITEGAVKTRMLRAKQQ 164 Query: 106 IEGM 109 ++ Sbjct: 165 LKAK 168 >UniRef50_C7PZ57 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PZ57_CATAD Length = 171 Score = 45.3 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L + + +LV Y +T +A S G + + +A + + A Sbjct: 106 DAVIRILSQLPPRMRAVLVLRYYDDLTEAQIAEALGISVGTVKSQAARALAKLREAMAAH 165 Query: 114 DIRL 117 + Sbjct: 166 EEER 169 >UniRef50_A8L8N4 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Frankia RepID=A8L8N4_FRASN Length = 171 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 D AM + L++ ++V Y + ++A CS G + +A + Sbjct: 97 DLAMR-DQVLRALRELPKRQRAVVVLRYFDDLPEAAVAEILGCSVGSVKTHASRALARLR 155 Query: 108 GMLMALDIRLEMDI 121 G D+R+ ++ Sbjct: 156 GSQHLGDVRVRIER 169 >UniRef50_Q38VH3 Putative uncharacterized protein n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38VH3_LACSS Length = 182 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 38 KVKSRPQCCDDDAMIICGCMARLKKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 S P C D+A+I +L + + LV Y + +A + Sbjct: 107 DQISDPHCDPDNAVIYNDLFEKLYQVCDPRERRFLVLRYFANASLKEIAVDLNITRRTA 165 >UniRef50_C5BZ96 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BZ96_BEUC1 Length = 181 Score = 45.3 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L +V Y +T +A + S+G + + L + +EG+L Sbjct: 105 GALSTLPRRERACVVLRYYSDLTVRQIAEQLGVSEGAVKRYLSQGVRRLEGVL 157 >UniRef50_D2Q0B4 Transcriptional regulator, LuxR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q0B4_9ACTO Length = 164 Score = 45.3 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 18/58 (31%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + L K +LV Y G + +A C+ + +A + L Sbjct: 97 DQLIGELAKLPRRQRAVLVLRYYGGQSDQEIADTLGCATSTVRAHASRALAALRIELT 154 >UniRef50_A9KJR1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KJR1_CLOPH Length = 178 Score = 44.9 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 20/64 (31%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M I + RL D + Y+ T +A + I R+ I L Sbjct: 114 MEIDEAIKRLNSLPQDQAIAIKMKYLEQKTLEEIARQLDIQPKTIKSRIHNGIVKIRQTL 173 Query: 111 MALD 114 + + Sbjct: 174 IGGE 177 >UniRef50_C6RMQ2 Putative uncharacterized protein n=2 Tax=Acinetobacter RepID=C6RMQ2_ACIRA Length = 184 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 47/164 (28%) Query: 3 DIQMVLERWGAW--AANNHEDVTWSSIAAGFKGLITSKVKSR------------------ 42 D++ L ++GAW + + + IA + + K + Sbjct: 17 DLEGWLNQFGAWMCSNTGTCGKSINPIAVAMDEAVVKQRKFKLGVKKTRQIIADYMMEDE 76 Query: 43 ----------PQCCDDDAMIICGCMARLK---KNNSDLHDLLVDYYVVGMTFMS--LAGK 87 Q D++A + + ++ + + D ++ Y G ++ + Sbjct: 77 KPKLSRGAVVCQIDDNEARAVQRLILDMQGQSEIMDEWMDAIICRYFYGNSWSQFVVWTP 136 Query: 88 HCCSDGYIGKR------LQK------AEGIIEGMLMALDIRLEM 119 ++G I + + K A ++ L AL R Sbjct: 137 LRDNEGQIVRYENGKPKMIKVYSENDARADVKCGLAALHCRYNF 180 >UniRef50_A6W4G3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W4G3_KINRD Length = 169 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 6/55 (10%), Positives = 18/55 (32%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 + L++ ++V Y + +A + + G + + K + Sbjct: 98 SRVVEALRRLPPRQRAVIVLRYFEDWSEEQIADQLDVTRGTVKSQASKGLASLRA 152 >UniRef50_B1ZQA9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZQA9_OPITP Length = 182 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 43 PQCCDDDAMIICG--CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQ 100 P D I G + L + + LV +Y+ +++ +A G + RL Sbjct: 90 PALTPDLVDKIDGDIVIEALNEIDEHHRTPLVLFYLQSLSYREIAELLDVPIGTVMSRLS 149 Query: 101 KAEGIIEGMLMALDIR 116 + + ++ ++ A ++ Sbjct: 150 RGKALLRALVTARALQ 165 >UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D877_9CLOT Length = 924 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + ++ + RL + +V YY+ ++ +A CS+G I RL I+ Sbjct: 126 ETKRLVQEMIDRL---PEEQRMAVVLYYLENLSVGQIARLMECSEGTIKSRLNYGRKSIK 182 Query: 108 GMLMALD 114 ++AL+ Sbjct: 183 AQVLALE 189 >UniRef50_B2A477 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A477_NATTJ Length = 187 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 44/121 (36%), Gaps = 17/121 (14%) Query: 9 ERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIIC-------------G 55 E + +W + + +++ ++ K ++ DD+ ++I Sbjct: 70 EDFQSWIYS----IARNALIDYYRKKGRKKEEASEAISDDETVLIDTPEDHVLLEEHSKE 125 Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 L+ + + +++ +V + +A S+G I L + + L + ++ Sbjct: 126 IFKLLEILSIEQQEVIQLRFVDELKIKEIAKVLDKSEGAIKGLLYRGLNKLSRHLDSKEV 185 Query: 116 R 116 + Sbjct: 186 Q 186 >UniRef50_Q67T27 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67T27_SYMTH Length = 208 Score = 44.5 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + RL D ++++ Y+ +++ +A + + RL +A ++ ML+ Sbjct: 133 DAIDRLS---PDYKEVVLLYHFYHLSYQQIADRLGVPVRTVETRLYRARANLKRMLV 186 >UniRef50_B5RWL8 Extracytoplasmic function sigma factor (Iron-regulated) protein n=4 Tax=Ralstonia solanacearum RepID=B5RWL8_RALSO Length = 185 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 12/93 (12%) Query: 12 GAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLL 71 G W + + ++ G + D + A + + ++ Sbjct: 93 GTWVESTADLPEYADETPGHDRQV------------DAGRELDRLSAAIAQLPPRCQEVF 140 Query: 72 VDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 V + + M +A + S + K +++ Sbjct: 141 VLHKIHDMPQAEVAVRLGISRKAVEKHIRRGMS 173 >UniRef50_Q1ZEJ7 Putative RNA polymerase ECF-type sigma factor n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEJ7_9GAMM Length = 195 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 24/64 (37%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 D+++ + + L++N+ ++ ++ +A S L+ A + Sbjct: 131 DESIDLVNALDLLRENHPRQSEVFELKNFAMISHQQIADMLSISTRTADNDLKFAVTWLR 190 Query: 108 GMLM 111 L+ Sbjct: 191 VKLV 194 >UniRef50_A6LZG2 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Clostridium RepID=A6LZG2_CLOB8 Length = 193 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 A ++K + ++V YY G+T +A C +G + RL A ++ L+ Sbjct: 122 AEIEKLDLKQKTVIVLYYFNGLTVSEIAKVMGCFEGTVKSRLHSARKKLKSSLI 175 >UniRef50_A0LT00 RNA polymerase, sigma-24 subunit, ECF subfamily n=5 Tax=Actinomycetales RepID=A0LT00_ACIC1 Length = 179 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 +A L+ + L+ Y ++ +A S G + + + G L A Sbjct: 111 EVLAALRALPRRQRETLILRYYADLSEQEIARTLGISRGAVKSHTFRGLAALRGRLAA 168 >UniRef50_UPI0001C370C3 DNA-directed RNA polymerase specialized sigma subunit n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C370C3 Length = 167 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 19/60 (31%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + K ++ YY G + +A ++ I LQ+ ++ L Sbjct: 99 NEIRENISKLPPKYSSVIFLYYYEGYSIREIAEMLGKNENTINSNLQRGRKKLKIELERE 158 >UniRef50_A4E6Q4 RNA polymerase sigma factor n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Q4_9ACTN Length = 263 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 DD ++I + + + +++ +V GMT + +A K S + + L++ Sbjct: 195 DDRLVIEEAI---RDFSPREREVIELRFVKGMTQIEIAKKLGISQVQVSRLLRR 245 >UniRef50_D1AC80 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AC80_THECD Length = 172 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 19/133 (14%) Query: 4 IQMVLER-WGAWAA-NNHEDVTW---SSIAAGFKGLITSKVKS--------RPQCCDDDA 50 +Q LER +G W D W SI + + + Q D Sbjct: 36 LQGALERLYGRWGRVKRRGDPEWYLRRSIINAVRDGWRGRRRHPELLGLENEEQPADSAY 95 Query: 51 MIICGCMAR------LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 + I + R L ++ Y G T + A S G + + +A Sbjct: 96 LPIDDLLTRDVVRKALAALPPRQRMVIALRYWGGYTEVETARLMGTSVGTVKSQAHRAMR 155 Query: 105 IIEGMLMALDIRL 117 + L + Sbjct: 156 ELRARLARTESAR 168 >UniRef50_D1VK63 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Frankia sp. EuI1c RepID=D1VK63_9ACTO Length = 227 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 18/54 (33%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 G + L+ +LV Y + +A CS G + + + + Sbjct: 116 DGLVRALRTLPPRQRAVLVLRYFDDLPEADVAAALGCSVGSVRSQASRGLARLR 169 >UniRef50_C0ZBE3 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBE3_BREBN Length = 181 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 8/95 (8%) Query: 19 HEDVTWSSIAAGFKGLITSKVKSRPQCCDD---DAMIICGCMARLKKNNSDLHDLLVDYY 75 E I S P DD + + I +ARL+ N +++ Y Sbjct: 88 DEQKRRKRIILSAMEDDIESRASIPM--DDQNVERIQIEEALARLRPNYRH---IIILKY 142 Query: 76 VVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 T +A +G I L KA G + L Sbjct: 143 FEDRTIRDIAEVLGHPEGTIKTWLHKALGALRKDL 177 >UniRef50_UPI0001BC2FB9 DNA-directed RNA polymerase specialized sigma subunit n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2FB9 Length = 162 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 54 CGCMARLKKNNSDLHD-LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 G + L ++ + + ++ +Y G + +A + I +L + ++GML Sbjct: 95 NGYLTELVQDMPEKYRTVIHLFYYEGYSIKEIALMLGEKENTIASQLSRGRERLKGMLSE 154 Query: 113 LDIR 116 ++R Sbjct: 155 KEVR 158 >UniRef50_A6GD49 RNA polymerase sigma-70 factor, ECF subfamily protein n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6GD49_9DELT Length = 218 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 14/114 (12%) Query: 5 QMVLERWGAWAA----NNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 + VL +W AW E + S+A G+ T+ ++R Q +A L Sbjct: 84 RNVLRQW-AWERKRKRTREEGLGEVSVADLGVGVSTAFRQAREQ---------KLLVAGL 133 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 ++ D +L YY G+ +AG +G + R++KA+ ++E L AL Sbjct: 134 QRLPIDAQVILELYYWEGLRAREIAGVFAIPEGTVRGRIRKAKVLLEAELDALT 187 >UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechococcus sp. RS9916 RepID=Q05SP3_9SYNE Length = 248 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 2/83 (2%) Query: 18 NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVV 77 + S A G LI C DD +L++ + +Y+ Sbjct: 143 PRSRDRYPSDADGDIPLIQELSDMTVSCDDDQQRE--WLQEQLEQLPQRARSCIERHYLA 200 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQ 100 G + +A + CS I + L+ Sbjct: 201 GTSAKDIAKEDGCSCSEIRRILR 223 >UniRef50_C6M4E4 Putative uncharacterized protein n=1 Tax=Neisseria sicca ATCC 29256 RepID=C6M4E4_NEISI Length = 126 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 11/122 (9%) Query: 4 IQMVLERWGAW--AANNHEDVTWSSIAAGFKGLITSKVKSRPQCC---DDDAM--IICGC 56 I +L RWG W +++ +S A + +RP D D++ + Sbjct: 3 IDDLLARWGFWRSVRDDNGLGYATSAANRAMAGDANTGGTRPLLPYGVDADSVFSAVDRV 62 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSL-AGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 + L + + + +L Y G S + CS + L AE ++ L ++ Sbjct: 63 VMGLPRFHQE---VLKVQYSGGFATRSAKVKECGCSGASFYRYLSDAEAMLAVRLRDGEV 119 Query: 116 RL 117 Sbjct: 120 GR 121 >UniRef50_B6FXK5 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FXK5_9CLOT Length = 204 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 6/105 (5%) Query: 13 AWAANNHEDVTWSSIAAGFKGLITSKVKSR---PQCCDDDAMIICGCMARLKKNNSDLHD 69 AW + + K +S + I+ + L + Sbjct: 93 AWKLSKSDKKNVPIDEIFAKAEREQNHESDNMTKCLESETVEIVRSAVNNL---DEKYRA 149 Query: 70 LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 ++V YY G + +A +G + RL KA +++G + +L+ Sbjct: 150 VVVLYYFNGFSVKEIANMLDVFEGTVKSRLFKARRLLKGKIESLN 194 >UniRef50_Q2IJT3 Sigma-24 (FecI-like) n=3 Tax=Anaeromyxobacter RepID=Q2IJT3_ANADE Length = 221 Score = 44.1 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 G A L + + L V +++ +A C G + RL +A + G L A Sbjct: 156 DGLAAALGALPPEWREALWLREVEELSYQEIARVQGCPVGTVRSRLARARRELAGRLRAE 215 Query: 114 D 114 D Sbjct: 216 D 216 >UniRef50_B9XAA5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XAA5_9BACT Length = 485 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 3/107 (2%) Query: 12 GAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQC--CDDDAMIICGCMA-RLKKNNSDLH 68 W N ++ ++ + + + + Q D DA I + + + D Sbjct: 69 AGWLYNTTRNLAMHTVRSEQRRRLREETAVTMQALDSDSDAGHIKEHLEPAMSELEPDDR 128 Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 D LV Y + + + S+ R+ +A + + I Sbjct: 129 DTLVLRYFEDRSLREVGQEFGISEDAARMRVNRALEKLRTIFNRKGI 175 >UniRef50_A1SDN5 Sigma-70, region 4 type 2 n=1 Tax=Nocardioides sp. JS614 RepID=A1SDN5_NOCSJ Length = 174 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + L + L YV + +A + CS+G + +L + + Sbjct: 106 LVEALATLSPRQRTALALRYVEDLDVRGIAQRMGCSEGTVKSQLSRGTERLR 157 >UniRef50_B1I489 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I489_DESAP Length = 186 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++ +I + L D+++ Y MT +A +G + RL+KA I+E Sbjct: 114 EEHAVISAAIDGLAAEYQ---DVILLKYQFEMTTKRIAETLNIPEGTVKTRLRKARAILE 170 Query: 108 GML 110 +L Sbjct: 171 SVL 173 >UniRef50_A9B5K1 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5K1_HERA2 Length = 203 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 +A + ++RL + + ++ Y + ++ A + G + RL +A + G Sbjct: 132 EATQLWQAISRLAQREQE---VIYLRYFLELSEQETAQALGIAQGTVKSRLHRALVRLRG 188 Query: 109 MLMAL 113 ++ Sbjct: 189 VIDGE 193 >UniRef50_Q2JWP6 RNA polymerase sigma factor n=25 Tax=Cyanobacteria RepID=Q2JWP6_SYNJA Length = 299 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Query: 33 GLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSD 92 I + Q ++D + + +A+L++ +L + +T A + S Sbjct: 220 DTIPDQRYRSFQLAEEDRIRLQNALAKLEERTR---QILEFVFFYDLTQKETAERLGISA 276 Query: 93 GYIGKRLQKAEGIIEGMLMA 112 + ++++K + +L Sbjct: 277 VTVSRQVKKGLERLAKLLSQ 296 >UniRef50_C0A8Z5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8Z5_9BACT Length = 238 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 4/97 (4%) Query: 11 WGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMI----ICGCMARLKKNNSD 66 W W + V++ + S++ + P DD + + + ++K N+ Sbjct: 130 WYWWRRKRDKTVSFDQPVSSDNETPLSEIYAAPVESPDDITVTQEFVDRVASGMEKLNAK 189 Query: 67 LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 ++L+ V +++ + S G + R+ +A Sbjct: 190 HREILILRNVKNLSYEEIGTILGISVGTVKSRIARAR 226 >UniRef50_D1BJJ1 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJJ1_SANKS Length = 163 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGK 87 +A + + ++ DD + + + RL + + +LV Y +T +AG Sbjct: 71 SAELRRTLADDLRIVRPRADDACLDVRDALLRLPPLHRE---VLVMTYWGRLTDHEIAGA 127 Query: 88 HCCSDGYIGKRLQKAEGIIEGMLMA 112 + + RL +A ++ L+A Sbjct: 128 LEITPAAVRSRLTRARALLRSTLLA 152 >UniRef50_A4X1T5 RNA polymerase, sigma-24 subunit, ECF subfamily n=25 Tax=Actinomycetales RepID=A4X1T5_SALTO Length = 311 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 4/81 (4%) Query: 34 LITSKVKSRPQCCDDDAMIIC----GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHC 89 L + P+ + A++ + +K+ N + + +V ++ G + A Sbjct: 225 LDAEREDRGPEGSPEAAVVEHITNVTLLGAVKQLNPEQQECIVLRFLQGFSVAETARAMG 284 Query: 90 CSDGYIGKRLQKAEGIIEGML 110 ++G I +A + +L Sbjct: 285 KNEGAIKALQYRAVRALARLL 305 >UniRef50_A4F607 RNA polymerase ECF sigma factor n=2 Tax=Actinomycetales RepID=A4F607_SACEN Length = 193 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 15/99 (15%) Query: 13 AWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCM-ARLKKNNSDLHDLL 71 W ++ A F + R + + L+ ++ Sbjct: 100 RWRR-----TRRETLIAEFPDVPAQPRHDRLE---------DEPVWQALQTLPPRQRAVV 145 Query: 72 VDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 V + G++ +A S G + + KA + L Sbjct: 146 VLRFYEGLSEAEIADTLGVSCGTVKSQNSKAMATLRKRL 184 >UniRef50_A0LWL9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LWL9_ACIC1 Length = 219 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 19/59 (32%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 M L++ LV Y + + +A + G + + + + L A Sbjct: 144 EVMTALRRLPERQRQALVLRYWMDLREHEIAEAMGITTGAVKAHISRGMAALTRYLTAS 202 >UniRef50_A6GRF7 Sigma factor, ECF subfamily protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GRF7_9BURK Length = 167 Score = 43.4 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 6/52 (11%), Positives = 20/52 (38%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 + +A + + + + G+++ +A + S + +L+ A Sbjct: 103 LDKLLAIINDLPPRCREAFILFKFDGLSYQEIAQRMDISPRTVEMQLRIAMA 154 >UniRef50_A9U7C4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7C4_PHYPA Length = 408 Score = 43.4 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + L++ + L+ + G+++ +A ++ + +RL +A I+ ML Sbjct: 92 ESIIQYLRELKPEYRVLVEYRWRKGLSYREIADLLEVTEDAVKQRLYRARESIKKML 148 >UniRef50_UPI0001C37E82 ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E82 Length = 199 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 I ++ N + +V YY+ G+T +A + K ++ AE ++ +L Sbjct: 130 ISELYNAIESLNPMQKERIVLYYIKGLTQQQIAELQRVRLFTVQKSIKAAEKNLKKILEM 189 >UniRef50_A3ZNA7 Probable RNA polymerase sigma-E factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNA7_9PLAN Length = 209 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + + + SD L+ + GMT+ ++ + S+ + R A + L Sbjct: 146 ELIQAVSQLQSDQRRLIEMRHRHGMTYEAIGQELGISERTVRNRWANAITQLRKELC 202 >UniRef50_C8WK82 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WK82_EGGLE Length = 171 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 24/127 (18%) Query: 9 ERWGAWAANNHEDVTWSSIAAGF---KGLITSKVKSRP-------------QCCDDDAMI 52 E + + + +A F + L ++R D AM Sbjct: 46 EAFLRFVRSGRSPRDGKPLAYLFTIARNLCIDAARARRLPVGPLDVDVPDGSPDADPAMA 105 Query: 53 I-----CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 I + L +L D++ + G +A S + +RL +A + Sbjct: 106 IGGGEVDALVDAL---PPELRDVVELRFDQGFKVGEIADVLGVSRFAVNRRLNRALAELR 162 Query: 108 GMLMALD 114 L D Sbjct: 163 RGLEGKD 169 >UniRef50_C7PWP3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PWP3_CATAD Length = 176 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 8/73 (10%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD- 114 +A L+K +V +++VG+T +A + + G + RL + + G L D Sbjct: 101 IIAALRKIPEAERRAIVLHHIVGLTVEDVAAETGVAQGTVKARLHRGRHRLSGHLTIDDP 160 Query: 115 -------IRLEMD 120 IR EM Sbjct: 161 VGRSQESIRKEMH 173 >UniRef50_A7B3V6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3V6_RUMGN Length = 576 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 10/94 (10%) Query: 21 DVTWSSIAAGFKGLITSKVKSR----PQCC-D--DDAMIICGCMARLKKNNSDLHDLLVD 73 V +SSI I R P+ D + A +I + L + + Sbjct: 119 SVAFSSITYSNSDEILDFEDDRIENIPEIAIDQKETARLIDNILNSLS---EEQRVPIAL 175 Query: 74 YYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 YY M+ +A CS+ + RL IE Sbjct: 176 YYYEQMSIKEIAHLLNCSENTVKSRLAYGRKKIE 209 >UniRef50_D2AQV8 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Actinomycetales RepID=D2AQV8_STRRD Length = 170 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 4/80 (5%) Query: 48 DDAMIICGCMAR--LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 DDA I + R L + ++V + ++ A CS G + + A G Sbjct: 92 DDA-TIDRIILRQALARLTPRQRAVIVLRFYEDLSERETAEILGCSLGTVKSQTHHALGR 150 Query: 106 IE-GMLMALDIRLEMDIVVN 124 + + E++ V Sbjct: 151 LRTLAPELSQLFAEIEEVRR 170 >UniRef50_B4CU29 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU29_9BACT Length = 201 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +DA ++ L++ + +++V G+TF +A S I R + A + Sbjct: 134 EDAALLDTA---LRELPPEQREVVVLRVWGGLTFAEIATALEQSINTITSRYRYALEALR 190 Query: 108 GML 110 L Sbjct: 191 REL 193 >UniRef50_D1QQH9 RNA polymerase ECF-type sigma factor n=1 Tax=Prevotella oris F0302 RepID=D1QQH9_9BACT Length = 181 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 3/84 (3%) Query: 34 LITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDG 93 ++ + I + L + + YV G++ +A S Sbjct: 95 NPAHNTTAKYVENMELGRQIEEAIEELPDKRR---QIFIMGYVHGISNKEIAEMMNISVR 151 Query: 94 YIGKRLQKAEGIIEGMLMALDIRL 117 + ++ KA + L L L Sbjct: 152 TVEVQIYKALKYLRVRLGYLTSFL 175 >UniRef50_D1PI45 RNA polymerase ECF-type sigma factor n=6 Tax=Bacteria RepID=D1PI45_9FIRM Length = 159 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 6/93 (6%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMII-----CGCMARLKKNNSDLH-DLLVDYYVVGMTF 81 K L+ S + R D+ A + + + + + D++ +Y G T Sbjct: 65 INACKDLLRSVFRRRTVPLDEAAELSAPPEEHRAVLQAVQGLPAAYRDVVYLHYYEGYTA 124 Query: 82 MSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 +A + + RL +A G++ L D Sbjct: 125 PEIAQILGKNVNTVYTRLTRARGLLRQALGGDD 157 >UniRef50_Q0FRC0 RNA polymerase sigma-70 factor n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FRC0_9RHOB Length = 178 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 46 CDDDAMIICG--CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 D + ++ A L++ +L ++ Y G + +A C G + R+ A Sbjct: 99 SDTETAVMHKKDLAAALQQLTPELRAVVELTYYNGYLYTEIAEILECPVGTVKTRMMTAR 158 Query: 104 GIIEGMLM 111 + ML Sbjct: 159 KRLREMLS 166 >UniRef50_C8W9U8 RNA polymerase sigma factor n=4 Tax=Coriobacteriaceae RepID=C8W9U8_ATOPD Length = 284 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 DD +++ + + + +++ +V G+T + +A K S + + L++ I+ Sbjct: 218 DDRIVLDEAI---RDFSPREQEIIRMRFVEGLTQVEIAEKLNISQVQVSRLLRRTLKRIQ 274 Query: 108 GMLMALDIRL 117 + + Sbjct: 275 EKIDPESVNR 284 >UniRef50_Q7NJR8 Glr1764 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NJR8_GLOVI Length = 197 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 21/54 (38%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 L+K + + +L Y ++ +A K G + +++ ++ L Sbjct: 140 DALEKLSPNHRRVLEMSYFKELSQREIAEKLGTPLGTVKSWVRRGLSELKETLQ 193 >UniRef50_Q67KB3 RNA polymerase ECF-type sigma factor variant n=1 Tax=Symbiobacterium thermophilum RepID=Q67KB3_SYMTH Length = 495 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 7/99 (7%) Query: 9 ERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCC----DDDAMIICGCMARLKKNN 64 + +GAW + + + + D +A I +ARL + Sbjct: 50 QAFGAWMRRILIRQCRQILERRRRSFPVDDLAAHLPDTVPGPDPEATAIWEMVARLGDH- 108 Query: 65 SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 L ++V Y++ M+ +A G + RL KA Sbjct: 109 --LRPVVVLRYMLDMSQQEIAEALGIPLGTVKSRLGKAL 145 >UniRef50_B1ZUG0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZUG0_OPITP Length = 524 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 37/100 (37%), Gaps = 15/100 (15%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDL-LVD 73 A ++ ++ ++S F G+ + + + + +L + + LV Sbjct: 430 AGDDQPEIEFASPDTFFAGMDAGERREW----------VDAALDKL----PEHQRVPLVL 475 Query: 74 YYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 Y+ M++ +A + S + + +A + +L Sbjct: 476 YHFEDMSYEDIAKRLRISLAKVKTDILRARAALARILERS 515 >UniRef50_B0N2H4 RNA polymerase sigma factor n=4 Tax=Bacteria RepID=B0N2H4_9FIRM Length = 258 Score = 42.6 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 7/85 (8%) Query: 25 SSIAAGFKGLITSKVKSRPQCCDDDAMI------ICGCMARLKKNNSDLHDLLVDYYVVG 78 SS+ K + +K DD ++ I LK N H ++ Y G Sbjct: 167 SSLQEEVKNDDGNNLKMIDSITDDKTVVSRTNETID-LYDALKSLNQKEHRVIKQRYFEG 225 Query: 79 MTFMSLAGKHCCSDGYIGKRLQKAE 103 ++ +A + S + + +KA Sbjct: 226 LSQSEIAKELFISQAQVSRIERKAL 250 >UniRef50_Q7WZ92 Putative uncharacterized protein n=1 Tax=Nonomuraea sp. ATCC 39727 RepID=Q7WZ92_9ACTO Length = 170 Score = 42.6 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 22/62 (35%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 A L + +LV Y ++ +A G + ++ ++ ++ L I Sbjct: 108 AALGRLTPRQRTILVLRYFEDLSETEIARVLGIRVGSVRSQIHRSLERLKQTAPELTIMR 167 Query: 118 EM 119 E Sbjct: 168 EF 169 >UniRef50_A7NKI5 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Chloroflexi (class) RepID=A7NKI5_ROSCS Length = 195 Score = 42.6 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 A L + L+V Y +G++ +A C G I RL A + G+L Sbjct: 129 AALLALSPIQRALIVQRYYLGLSEAEMANSMDCPPGTIKSRLHAARERLRGILA 182 >UniRef50_A3TPZ9 Putative RNA polymerase ECF-subfamily sigma factor n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TPZ9_9MICO Length = 172 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 2/68 (2%) Query: 43 PQCCD--DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQ 100 P D DD + + L + Y + + +A CS + + Sbjct: 93 PSTDDHADDVVDRDALLEALSGLPPRQRTAVTLRYFEDLPDVEIAALMGCSVSTVRSSIH 152 Query: 101 KAEGIIEG 108 A + Sbjct: 153 HALAALRA 160 >UniRef50_B9XHV4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XHV4_9BACT Length = 498 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 8/92 (8%) Query: 31 FKGLITSKVKSRPQCCD-----DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLA 85 F+ + +C D A ++ M RL K + + +V + + +A Sbjct: 95 FREQEAYMQSTVQECADATVWNQLAPLLDEAMGRLGKKDREA---VVLRFFKEKSLNEVA 151 Query: 86 GKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 ++ R+ +A + M + L Sbjct: 152 EAMKVTEAAAQSRVHRAMEKLRKHFMKRGVTL 183 >UniRef50_B7B6L4 Putative uncharacterized protein (Fragment) n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B6L4_9PORP Length = 301 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 3/86 (3%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGK 87 A S + D II + +L Y ++ +A Sbjct: 208 IAFLGEASDSNDVLKSVINQDLREIIELSVNKL---PPKCAQAFRLAYFHDISHKEIAEI 264 Query: 88 HCCSDGYIGKRLQKAEGIIEGMLMAL 113 S + +++A + L L Sbjct: 265 MGISPRTVEGHIRQALAFLREDLKGL 290 >UniRef50_C5C2T2 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Micrococcineae RepID=C5C2T2_BEUC1 Length = 194 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 17/48 (35%) Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 +V Y +G+ +A S G + +A ++ G L Sbjct: 138 TPRQRRAVVLRYFLGLPEADVARDLRVSVGTVKSTTSRALAVLRGHLE 185 >UniRef50_C6J878 RNA polymerase sigma factor n=6 Tax=Clostridiales RepID=C6J878_9FIRM Length = 180 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 65 SDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + +LV YY+ G + ++ +G I RL +A ++ L + + M Sbjct: 106 PEDLRILVTLYYLEGFSQKEISEALDIPEGTIKSRLSRAREFLKAQLSDEEEKRPM 161 >UniRef50_UPI0001695612 hypothetical protein Plarl_25483 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001695612 Length = 207 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 I + +++ L DLL Y+ G A K S + + + +A G Sbjct: 146 KIDRVLEVMEQQEPHLADLLRLRYIEGCGISEAAKKMNISRSTLYRWVPEAIG 198 >UniRef50_Q67T39 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67T39_SYMTH Length = 210 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 44 QCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 ++ ++ + RL + ++V Y + +A C G + RL +A Sbjct: 119 VLDSEERRLLHVAIGRL---DPVHRTVIVLKYFHEFSDTEIAAVIGCPPGTVKSRLHRAR 175 Query: 104 GIIE 107 ++ Sbjct: 176 ELLR 179 >UniRef50_Q67MR5 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67MR5_SYMTH Length = 182 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 L++ ++L+ Y G T +A G + RL A + L A D Sbjct: 117 LQRLTRAHREVLLLRYFHGFTEPEIAEILGLPVGTVKSRLHAARQAVRRHLNATD 171 >UniRef50_A6X3H9 Transcriptional regulator, DeoR family n=11 Tax=Rhizobiales RepID=A6X3H9_OCHA4 Length = 335 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 19/41 (46%) Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 +H LV +++ G+T +A + S + + +++ Sbjct: 19 IARQMHQALVLHFLEGLTQAQIADQLGISHATVNRLIKRGR 59 >UniRef50_A6GEF8 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEF8_9DELT Length = 194 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 18/122 (14%) Query: 9 ERWGAWAANNHEDVTW------SSIAAGFKGLITSKVK-----SRPQCCDDDAMIICG-- 55 R+G+W +A ++ + + RP+ + DA + Sbjct: 51 RRFGSW--EGRASARAWLYGVARRVAFRYRRSQARRERKHAALPRPEPPEFDAQLSDRED 108 Query: 56 ---CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 ++ L + + + V V G+ +A C + RL++A +E +L Sbjct: 109 LARVVSALDALSPERRQVYVLSVVEGLRANEIADALDCKVPTVYSRLRRARADLERVLSL 168 Query: 113 LD 114 Sbjct: 169 AH 170 >UniRef50_A6WAA6 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WAA6_KINRD Length = 196 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 21/62 (33%) Query: 50 AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 A + +A +++ L+ Y + + +A G + +A+ + Sbjct: 132 AERVDHLLAAVQRLPRRQRHALILRYWMDLPVAEIAEALQIPLGTAKSDISRAQRALATR 191 Query: 110 LM 111 L Sbjct: 192 LE 193 >UniRef50_A3ZWU1 RNA polymerase ECF-type sigma factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWU1_9PLAN Length = 173 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Query: 33 GLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSD 92 G + D+ + +A L + + ++L+ Y+ ++ +A + S Sbjct: 88 GSPAERDPLGWLLADERQQQVRDALAELPQRD---AEILLLKYLEDWSYQQIADRIGASH 144 Query: 93 GYIGKRLQKAEGIIEGMLMALDI 115 + RL +A G + L A ++ Sbjct: 145 SAVEARLHRARGRLRDKLRARNV 167 >UniRef50_D1SDA4 RNA polymerase sigma factor n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SDA4_9ACTO Length = 169 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 20/55 (36%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +A L++ L +Y+ + +A + G + L + + +L Sbjct: 101 LVAALRQLPPRHRQALALHYLFDLPVEEIAREAGVPTGTVKSWLSRGRARLAELL 155 >UniRef50_B9CP17 RNA polymerase sigma factor n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CP17_9ACTN Length = 276 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 30/77 (38%), Gaps = 4/77 (5%) Query: 45 CCDDDAMI--ICGCM--ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQ 100 +D+A+ + + + +++ +V G+T + +A K S + + L+ Sbjct: 200 ITEDEALAGSDDRIVLEDAIADFSPREQEIIRMRFVEGLTQVEIAEKLGISQVQVSRLLR 259 Query: 101 KAEGIIEGMLMALDIRL 117 + I+ + + Sbjct: 260 RTLKRIQEKIDPESVTR 276 >UniRef50_Q67LD3 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67LD3_SYMTH Length = 183 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 47 DDDAMIICG--CMAR-LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 ++ A+ + ++R L+ + D D+++ + M +A ++G + L +A Sbjct: 110 EEAALALDDRQAVSRALQALSPDQQDVVLMRFAGDMKLKDIAAAMGKTEGAVKALLFRAL 169 Query: 104 GIIEGMLMALDIR 116 + L ++ Sbjct: 170 NTLRRKLSESGVQ 182 >UniRef50_D2LZ92 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ92_BACS4 Length = 180 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 42 RPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 Q DD M L+ + LL +Y+ G + LA + + I RL++ Sbjct: 96 GEQSSDDVGYEKIEIMELLETLPEEQCQLLKLFYIEGFSIEDLASIYKVPENTIKTRLRR 155 Query: 102 AE 103 A Sbjct: 156 AR 157 >UniRef50_C8XC28 Transcriptional regulator, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XC28_NAKMY Length = 202 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 + L ++LV Y G++ +A S G + +A + Sbjct: 143 VVNALGDLAPRQREVLVLRYYGGLSEAEIAEATGLSKGTVKSTASRAVAKL 193 >UniRef50_D1A9V2 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Actinomycetales RepID=D1A9V2_THECD Length = 202 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 20/60 (33%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L + + + LV Y ++ +A S G + + + +L L Sbjct: 142 SAVIDALARLPARQREALVLRYYADLSEAEIARAMGISRGAVKSHTARGMAALRNVLEQL 201 >UniRef50_A6LEC9 RNA polymerase ECF-type sigma factor n=4 Tax=Bacteroidales RepID=A6LEC9_PARD8 Length = 241 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 18/57 (31%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 M L K + +++ YYV G+ +A + L + + Sbjct: 168 LMKALTKLSPHQREIIYLYYVNGLGHDEIAEILGINYQSSKNLLSRTLSKLRRWFSL 224 >UniRef50_B8G5V6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G5V6_CHLAD Length = 202 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +I +A L D +++ Y G++ +A G I R++ ++ L Sbjct: 133 RLISNALADL---PPDQREVIELAYFGGLSQREIAEHLQSPLGTIKTRIRLGLQKLKQAL 189 >UniRef50_D0LAC0 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAC0_GORB4 Length = 225 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 3/101 (2%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 + A + S + A + GC+ L +V Sbjct: 128 VRSESASSRRDIRYAAQAQESPFDLVSDAVGSSETAETVVGCLGSLTDV---QRQSVVLA 184 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 Y G+T+ +A + + + R++ + L D+ Sbjct: 185 YYEGLTYREVAERLSVALPTVKSRIRDGMIRLRRCLGGADV 225 >UniRef50_C6VZP7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VZP7_DYAFD Length = 192 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 8/65 (12%), Positives = 20/65 (30%) Query: 44 QCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 D++ + A L+ + + Y + +A SD + L + Sbjct: 110 SIHDEEKELTQKLAAVLQNLPKRQLEAITLRYYENFSISEIAEIMDVSDKTVRNTLHNSL 169 Query: 104 GIIEG 108 ++ Sbjct: 170 TLLRK 174 >UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=95 Tax=Actinomycetales RepID=A8L2N7_FRASN Length = 376 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L+K +L+ + MT +A + S ++ + L + + L Sbjct: 322 LEKLPPREKRILLLRFFGNMTQSQIANELGISQMHVSRLLARTLAQLRRGL 372 >UniRef50_A3TQ93 Putative RNA polymerase ECF-subfamily sigma factor n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TQ93_9MICO Length = 172 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 24/55 (43%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +A L++ + L + + +Y+ + +A + G + RL + + +L Sbjct: 93 VVAALRQLSPVLRETVALHYLADRSLEQIAQELEVPIGTVKARLHRGRAQLADLL 147 >UniRef50_A6P2Y8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P2Y8_9BACE Length = 166 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 10/116 (8%) Query: 5 QMVLERWGAWAA--NNHEDVTWSSIAAGFKGLITSKVKSRPQCCDD--------DAMIIC 54 + +L W A++ + W + R DD + Sbjct: 47 EALLRAWQAFSRLKSEEALKGWLLKITVNCAREQRRKGGRVTYTDDLEPLAGSVEDGQYD 106 Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G + D +V +Y MT +A + G + RL +A G ++ ML Sbjct: 107 GLWDAVLALPEDQRTAVVLFYYEDMTLAQIASVLGVAQGTVKSRLCRARGRLQEML 162 >UniRef50_Q02AP7 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Acidobacteria RepID=Q02AP7_SOLUE Length = 206 Score = 42.2 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 32 KGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCS 91 + ++ + R C + + L + L+ + GMT +A Sbjct: 132 REHDIARERDRIVIC------LHDALNALAMEDDVKARLVEMRFFGGMTAEEIAECVSTP 185 Query: 92 DGYIGKRLQKAEGIIEGMLMA 112 + + L+ A+ + + A Sbjct: 186 VHIVRRELRSAQVWLRREIEA 206 >UniRef50_A4XLN5 RNA polymerase sigma factor n=8 Tax=Clostridia RepID=A4XLN5_CALS8 Length = 183 Score = 42.2 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 IC + L + L + + + G + +A C G + RL A + L Sbjct: 116 ICKAILSL---DYKLRAVFILKHFYGYKYKEIAKILNCPVGTVRSRLHFAIKFLVKELEK 172 Query: 113 LDI 115 + Sbjct: 173 KGV 175 >UniRef50_D1XKT7 RNA polymerase, sigma-24 subunit, ECF subfamily n=19 Tax=Streptomyces RepID=D1XKT7_9ACTO Length = 203 Score = 42.2 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 8/110 (7%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDA----MIICGCM 57 RD + L A+ +++ S++ GL ++ + + Sbjct: 91 RDPEKTL----AYLRQTVVNLSRSALRRRILGLKLLSKPMPDMASAEEGAYDQLERDALI 146 Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +K ++LV Y MT +A S G + + + Sbjct: 147 KAMKGLQRRQREVLVLRYFSDMTEAQVAETLGISLGSVKAYGSRGIAALR 196 >UniRef50_C0ZI65 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI65_BREBN Length = 177 Score = 42.2 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 D+ + + + RL + ++V +Y M +A S+ RL +A + Sbjct: 105 DELIDLRDAVERL---DEQQRLVIVLHYFEDMPLRQVAEILEISESAAKMRLSRARNNLM 161 Query: 108 GMLMA 112 L Sbjct: 162 EKLHT 166 >UniRef50_UPI000197305F RNA polymerase ECF-type sigma factor n=1 Tax=Clostridium sp. M62/1 RepID=UPI000197305F Length = 200 Score = 42.2 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 +++ I + RL + +L+ YY + ++A C +G + RL A I Sbjct: 117 EEERQRIRDAVDRL---DEKHRTVLILYYFNEFSTRTIARIMGCLEGTVKSRLFTARRKI 173 Query: 107 EGMLM 111 LM Sbjct: 174 RAELM 178 >UniRef50_C3RNS5 Conjugative transposon protein n=6 Tax=Bacteria RepID=C3RNS5_9MOLU Length = 171 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L K +S D+++ Y M+ +A + S I +R ++ +L Sbjct: 117 LYKLSSKERDVILLRYFQSMSDQEIAELYHVSRSAIYRRRSNGLKKLKTVL 167 >UniRef50_Q484H9 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484H9_COLP3 Length = 197 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 1/73 (1%) Query: 34 LITSKVKSRPQCCDDDAMI-ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSD 92 L + + C + M + L + +LL G+ +A + S Sbjct: 117 LPQEEKQPEYDCNIAETMCDLERVYNALVQEKPRAAELLQLNVFAGLNAKKIADMYNISL 176 Query: 93 GYIGKRLQKAEGI 105 + L+ A Sbjct: 177 RTVQNELKFAHAW 189 >UniRef50_A8RQ09 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQ09_9CLOT Length = 190 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 13/122 (10%) Query: 9 ERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR--------- 59 E +G W W K +V + + + A ++ M R Sbjct: 69 EYFGNWLYKTLTREAWRYCRKNRKEQPVEEVFGKEE--PETASVLEEVMMRSQEKELYKA 126 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML--MALDIRL 117 ++ +V YY M+ +AG C +G + RL A ++ L + Sbjct: 127 IRNLPVKQRTAVVLYYFNQMSTREIAGIMGCLEGTVKSRLYTARANLKQELMEERKRVGR 186 Query: 118 EM 119 E+ Sbjct: 187 EV 188 >UniRef50_A6TPP5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TPP5_ALKMQ Length = 139 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++A I + L D ++ YY M +A S + RL++ + ++ Sbjct: 72 EEAKAIKQKVDALPDIQK---DAIILYYYHDMKAKDIAKIMGVSLPTVKSRLKQGKDKLK 128 Query: 108 GMLMALD 114 M D Sbjct: 129 KMFSEED 135 >UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Frankia sp. EuI1c RepID=D1V958_9ACTO Length = 393 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L+K +L+ + MT +A + S ++ + L + + L Sbjct: 339 LEKLPPREKRILLLRFFGNMTQSQIAIELGISQMHVSRLLARTLAQLRRGL 389 >UniRef50_B0P0F0 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P0F0_9CLOT Length = 188 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 4/82 (4%) Query: 37 SKVKSRPQCCDDDAMI----ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSD 92 SR +D I + D D ++ +Y G + +A S+ Sbjct: 105 GNDISRNLIDPEDLFIRYIYLDSLKIIFSTLTPDFRDTIIFHYFYGFKYSEIACMFHISE 164 Query: 93 GYIGKRLQKAEGIIEGMLMALD 114 + KR+ A+ + M D Sbjct: 165 RAVKKRIAVAKKRVRTMFQKED 186 >UniRef50_A6G924 RNA polymerase sigma-70 factor n=6 Tax=Plesiocystis pacifica SIR-1 RepID=A6G924_9DELT Length = 220 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 71 LVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNSN 127 L +Y M+ +A + G + RL++ ++ L +++ D+++ +++ Sbjct: 134 LELHYWEHMSDREVALALGVAHGTMKSRLRRGRKLLAERLETMNVG---DVLLESTS 187 >UniRef50_C6PXW0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PXW0_9CLOT Length = 211 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D ++I G + LK D ++LV Y+ + +A + ++ +A + Sbjct: 145 EDKIVIEGLLNTLKN---DEREILVLRYLKDYSIQDVAEIMDIPINTVKTKIYRALNFLR 201 >UniRef50_A3TPC7 Putative RNA polymerase ECF-subfamily sigma factor n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TPC7_9MICO Length = 176 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 19/59 (32%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + L+ D + Y + ++ +A S + LQ+ + L A Sbjct: 118 VIDALRTLPRRQRDCVTLRYYLDLSIPDIAETLGLSANTVKTHLQRGLASLAQTLEANR 176 >UniRef50_UPI0001C378AC ECF subfamily RNA polymerase sigma-24 factor n=6 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C378AC Length = 184 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 45 CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 C++ + + +++L + +L Y G A + I K L A+ Sbjct: 112 ICEEQKIELHRAISKLY---PEYGQVLYLVYFEGFDNTETARIMKKTKRQIEKLLYNAKQ 168 Query: 105 IIEGML 110 ++ L Sbjct: 169 ALKNEL 174 >UniRef50_UPI00016C377D RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C377D Length = 245 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D + G +ARL + + +L+ + G+ + +A G I RL +A + Sbjct: 122 EDERQLHGAIARLSSEHRE---VLLLKDIDGLKYEDIAEALGVPIGTIRSRLHRARLELR 178 Query: 108 GMLMALDIR 116 +L A D R Sbjct: 179 DLLAAPDER 187 >UniRef50_UPI00016C427A RNA polymerase sigma-H factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C427A Length = 501 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 DD ++ ++ L + LV V G++ + A + ++G + RL + ++ Sbjct: 128 DDAGAVVDEELSGLPARYREP---LVLCEVQGLSRRAAARELGVAEGTLSSRLARGRKLL 184 Query: 107 EGMLMALDI 115 L + Sbjct: 185 RERLSRRGV 193 >UniRef50_D1SBY5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SBY5_9ACTO Length = 94 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 27 IAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAG 86 +A + D+ A+ + + L++ + ++V + +T +A Sbjct: 1 MAERLDATPAERGGGDH--TDETALRLS-VVGALRRLTTRQRAVVVLRHYEDLTEAQVAE 57 Query: 87 KHCCSDGYIGKRLQKAEGIIE 107 CS G + + +A + Sbjct: 58 VLGCSVGTVKRHGHEAVRRLR 78 >UniRef50_C7QFT3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QFT3_CATAD Length = 171 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 6/102 (5%) Query: 13 AWAANNH---EDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHD 69 W + W AG + + D + + +A L K L Sbjct: 58 GWVRSTAYRLAVSRWRHHTAGLRAFMRHGAPGEMAPPSADTIAVRDALAELPK---GLRA 114 Query: 70 LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 LV YY+ GM +A G + RL + + ML Sbjct: 115 ALVMYYLGGMQVAEVATALDLPQGTVKARLSRGRAAMAVMLT 156 >UniRef50_C1ZN14 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZN14_PLALI Length = 214 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%) Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 +L + + +L ++ Y T +A S + RL++A ++ Sbjct: 130 QLSQFDPELAQMIDLRYQQSWTLDRMAEFLGLSIATVDGRLRRAINRLKKA 180 >UniRef50_Q7UFE5 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7UFE5_RHOBA Length = 192 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 15/49 (30%) Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 + RL K + D L+ G++ S + + A Sbjct: 137 LERLFKVDPDSAKLVELRVFAGLSITEAGELMKMSRSTAYRNWEFARTW 185 >UniRef50_C0ZB38 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB38_BREBN Length = 188 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 7/54 (12%), Positives = 22/54 (40%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +A + + + ++ +Y ++ +A ++G + RL +A + Sbjct: 116 DQLVAEVLQLSPLYRQVIALHYYADLSIGEVAEVLGVTEGTVRTRLHRARQQLR 169 >UniRef50_D2ASW7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASW7_STRRD Length = 186 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + +ARL + D+L+ + G++ +A S G +G RL +A I L Sbjct: 120 ALAEAIARLGR---GERDVLLLTALAGLSHEEIAAALGISYGTVGSRLSRARAKIRAAL 175 >UniRef50_P46358 Probable RNA polymerase sigma factor rfaY n=7 Tax=Xanthomonadaceae RepID=RFAY_XANCP Length = 400 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 48 DDAMIICG---CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 + A+ + + + +D ++L+ YY G +A SD + KRL +A Sbjct: 119 EQALQVEEERAALEIMSALPNDSREILLLYYREGQRSQQVASLLGLSDAAVRKRLSRARA 178 Query: 105 IIEGML 110 + L Sbjct: 179 TVRNEL 184 >UniRef50_UPI00016C41AC hypothetical protein GobsU_01572 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C41AC Length = 1240 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 4/110 (3%) Query: 12 GAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK---KNNSDLH 68 G W + + + A + + P + + + L D Sbjct: 88 GGWLYSVAHRLALRTRADAARRERIEGQWTGPAAAEPPDLAVREVADVLHEELNRLPDAL 147 Query: 69 DL-LVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 L L+ Y GMT A + + RL++ + L+ + L Sbjct: 148 RLPLLLCYFDGMTRDEAARELGVGVDVLRGRLERGRSRLHAKLLRRGVSL 197 >UniRef50_A5VCC1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VCC1_SPHWW Length = 176 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 L + ++D L++ Y+ G + LA + G I L ++ ++G L Sbjct: 124 LDRLDADQRALVLAAYLNGESREELAERLGHPTGTIKSWLHRSLARLKGCLDG 176 >UniRef50_A4XGS0 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Clostridia RepID=A4XGS0_CALS8 Length = 180 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 +D + + +L D+L YV + +A S+ + KRL++A+ Sbjct: 112 EDLDHLARAVLKLPVIYK---DVLTLKYVQEFSNEEIAKMLDISEATVRKRLERAK 164 >UniRef50_UPI00016984C8 Sigma-70 region 2:Sigma-70 region 4 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016984C8 Length = 88 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++ + C+ +LK N ++V Y G+T L+ + G + +++ ++ Sbjct: 27 EEGRRLNDCLEQLKAN---QRQVIVLAYFKGLTHEELSQQTGTPLGTVKTWIRRGLDQLK 83 Query: 108 GMLM 111 L Sbjct: 84 RCLE 87 >UniRef50_Q1IW21 RNA polymerase sigma factor n=2 Tax=Deinococcus RepID=Q1IW21_DEIGD Length = 194 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 22/57 (38%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 +++ + D + + G+ + +A G + RL + + +L + + Sbjct: 137 MRQLPPEQRDAVTLRELSGLDYAEIAEVLGVELGTVKSRLNRGRAALRALLAGIGVT 193 >UniRef50_B4ACX4 Possible ECF family DNA-directed RNA polymerase sigma subunit n=13 Tax=Enterococcus faecalis RepID=B4ACX4_ENTFA Length = 169 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 48 DDAMIICGCMARLKKNNSDLHDL-LVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 DD + + +L D + + LV YY VG + +A + S I RL + + Sbjct: 106 DDLYDLDKGLHKL----PDNYRVPLVMYYYVGFSIKEIAQQLDVSTNTIKIRLSRGRKKL 161 Query: 107 EGML 110 L Sbjct: 162 RIYL 165 >UniRef50_C7QCS7 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Actinomycetales RepID=C7QCS7_CATAD Length = 172 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 13/114 (11%) Query: 9 ERWG---------AWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGC--M 57 +RWG AW + SS L + +R + ++ + Sbjct: 48 QRWGRVAGYEDPEAWVRTVAYRIAVSSWRRTANRLRAHRRGARAE--EEPGASPDRLALI 105 Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 A L+ ++ ++V +++VG++ +A + G + RL + + G + Sbjct: 106 AALRAIPAEQRRVIVLHHLVGLSVEEVAQETGAPIGTVKSRLARGRRALAGHVS 159 >UniRef50_UPI0001B9ECB9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECB9 Length = 172 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 DA + + + ++L+ + + +A S+G I RL +A +E Sbjct: 105 DAAAVSQIWKCVMELPPKYREVLILEFHYQLPRKEMAQLLDLSEGTIKSRLHRARARMET 164 Query: 109 MLMALDI 115 ML DI Sbjct: 165 MLKGADI 171 >UniRef50_C5EFA1 RNA polymerase n=2 Tax=Clostridiales RepID=C5EFA1_9FIRM Length = 202 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 15/115 (13%) Query: 9 ERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLH 68 E + +W W + +V + + ++ +A + +L+ Sbjct: 82 EHFSSWLYKTLTREAWRICRKSRREQPVEEVYGEEE--PQASSVLDEVLAH--SRDDELY 137 Query: 69 D-----------LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 ++V YY M+ +AG C +G + RL A ++ L Sbjct: 138 RAIGSLPVKQRTVVVFYYFNQMSTKEIAGIMGCMEGTVKSRLYTARINLKRELTR 192 >UniRef50_Q24Z61 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24Z61_DESHY Length = 173 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M L + ++ YY G T +A + I +L + +++ +L Sbjct: 110 EIMKELLELPPMYRSVIYMYYYEGYTTKEIALILGKRESTIRSQLTRGRALLKTIL 165 >UniRef50_A6NPX5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NPX5_9BACE Length = 92 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 17/50 (34%) Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + L+ YY G+ + + I + +++ E + L Sbjct: 29 EDVTPHQRQALLLYYAEGLNMREIGEQLGVDKSTISRTIKRGERRLRRCL 78 >UniRef50_B8I535 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I535_CLOCE Length = 180 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 DD++ +L K N + ++++ ++ ++ +A C S + +RL +A+ I Sbjct: 114 DDES--FNELKMKLCKLNKEYMEIIMLKHLYDLSNNEIADVLCISCDAVRQRLSRAKKAI 171 Query: 107 EGMLM 111 + ++ Sbjct: 172 KKVIE 176 >UniRef50_A6G2K5 RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G2K5_9DELT Length = 187 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L+ +L L Y MT +A G + RL++A ++ L Sbjct: 98 LLEALRHIPVELQVALELRYWEQMTEAEIAMTLGIPLGTLKSRLRRARQLLAERLRMS 155 >UniRef50_UPI00016C5360 RNA polymerase sigma factor sigW n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5360 Length = 195 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 50 AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 + L + L +Y+ G + +A + G + +RL A ++ + Sbjct: 117 GEAVEQLKGALSELKPLDRQTLEAFYIRGRSLKQIAKEFAVPTGTVKRRLHVARQRLKEV 176 Query: 110 LMALDIRL 117 L +D L Sbjct: 177 LEEIDPTL 184 >UniRef50_UPI0001C37B48 ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37B48 Length = 193 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 15/109 (13%) Query: 24 WSSIAA---GFKGLITSKVKSRPQCCD-------DDAMIICGCMARLKKNNSDLHDLLVD 73 + S++A F S++ S P D ++ I + ++K +++ Sbjct: 87 YRSLSAQKNLFPKAAESEISSLPSDTDIAARTESNEIRKI--VIDMIEKLGEPDSSIIIL 144 Query: 74 YYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 Y G ++ K S + KR ++A ++ +L +I MD Sbjct: 145 KYYYGRNSNEISRKLSISPATVRKRSERALKRLKKLLSENNI---MDQE 190 >UniRef50_C6W8I8 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W8I8_ACTMD Length = 165 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 1/70 (1%) Query: 42 RPQCCDDD-AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQ 100 RP D + A + L++ ++V +V ++ +A C+ G + + Sbjct: 87 RPVPPDTESAEHRQNLIPALQELPPRQRAVIVLRFVHDLSVEQVAQTMGCTQGTVKSQTS 146 Query: 101 KAEGIIEGML 110 + + Sbjct: 147 RGLEALRRAF 156 >UniRef50_Q82WV3 Sigma factor, ECF subfamily n=1 Tax=Nitrosomonas europaea RepID=Q82WV3_NITEU Length = 197 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 7/78 (8%) Query: 34 LITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDG 93 +++ + Q + + I H V + G + +A K + Sbjct: 127 TDPARLVAARQLLEKLCIAIDAL-------PPQCHRAFVLHKFDGYSHAEIAEKLGITRN 179 Query: 94 YIGKRLQKAEGIIEGMLM 111 + K L +A + +L+ Sbjct: 180 AVEKLLIRALIRLRQVLV 197 >UniRef50_Q7UMX2 Probable ECF sigma factor AdsA n=1 Tax=Rhodopirellula baltica RepID=Q7UMX2_RHOBA Length = 228 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + + +L + +++ YV GM +A + +D I L ++ +E L Sbjct: 166 AMSQAIGQLS---EEQQNVIRLRYVDGMPTKQIAEQLGKTDVSIRVLLSRSMRQLEKQLE 222 Query: 112 ALDIRL 117 A Sbjct: 223 ANRPTR 228 >UniRef50_A4FLE7 RNA polymerase sigma factor n=2 Tax=Saccharopolyspora erythraea RepID=A4FLE7_SACEN Length = 280 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 L + +LV + GMT +A + S ++ + L + + L Sbjct: 210 LAELEERERRILVMRFFRGMTQTQIAEQVGISQMHVSRLLSRTLAWLRERLET 262 >UniRef50_D0MD44 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD44_RHOM4 Length = 173 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 I +A+L + + L+ Y G+++ +A S + ++ +A + L Sbjct: 114 AIERALAQLPETRRTIF--LLSRY-HGLSYREIAEVMGISVKTVETQMGRALRFLSQYLH 170 Query: 112 ALD 114 L Sbjct: 171 PLT 173 >UniRef50_A5ZEP0 Putative uncharacterized protein n=6 Tax=Bacteroides RepID=A5ZEP0_9BACE Length = 169 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 10/95 (10%) Query: 25 SSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSL 84 S + K + + SR C +KK + +L Y+ + + Sbjct: 85 SQLINKIKESDSQQPDSRILC----------IRKAMKKLTPYNYYILEACYIHNKKYKEV 134 Query: 85 AGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 A + S I K + KA I+ L + E Sbjct: 135 AEELNVSVAAIHKNIVKALRILREELGQKGNQNEF 169 >UniRef50_C7M0J5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0J5_ACIFD Length = 186 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 2/106 (1%) Query: 8 LERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCM--ARLKKNNS 65 L W A A+ AA + +RP + +++ + L + Sbjct: 74 LRTWLATLAHRRAVDAVRHDAALRRREDRDHQLTRPPTTAEIEVVMDRVIVADALASLSE 133 Query: 66 DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + Y G+T+ +A + +G + R++ A + ++ Sbjct: 134 QERRAIELAYFDGLTYREVAARLEEPEGTVKSRIRGALTKLHRQMV 179 >UniRef50_B9L3F7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L3F7_THERP Length = 188 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 L + +S L ++L Y G+T +A + G + R++ A + L Sbjct: 132 LAELDSGLREVLELAYFSGLTQREIAERLGLPLGTVKTRVRTALRRLAEALAGDR 186 >UniRef50_B9XBJ5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XBJ5_9BACT Length = 468 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + + L + + D+L+ Y G + +A +D KR+ +A + Sbjct: 122 LDAALGELSETDR---DILLFRYFQGKSAREIAQTLGLTDEAAQKRVNRAVERLR 173 >UniRef50_Q1IV01 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IV01_ACIBL Length = 165 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 6/93 (6%) Query: 22 VTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTF 81 + + PQ +D C + L + + YV G+T Sbjct: 70 RRMPHDQTSLDDIDPAAPHKEPQLGLNDLFRKCSSLTPLHRV------CVTLRYVHGLTR 123 Query: 82 MSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 +A K S+ + LQ A ++ L Sbjct: 124 AEIAAKLGLSETQVKGHLQYALHLLRTALTGGK 156 >UniRef50_C7MRI6 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-E family n=2 Tax=Pseudonocardineae RepID=C7MRI6_SACVD Length = 207 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + L K ++LV Y G++ ++ S G + +A ++ + Sbjct: 144 VVQALSKLPPRQREVLVLRYYGGLSEAEISEAAGISRGTVKSTASRALEALQRAM 198 >UniRef50_A8SKN1 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKN1_9FIRM Length = 147 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 5/98 (5%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQC--CDDDAMIICGCMARLKKNNSDLHDLLV 72 + NN+ ++ + LI+ ++ Q + + M I ++ L N + ++++ Sbjct: 48 SYNNNTGSDFNVVENKRLNLISEQIALSQQLKKVEYEYMEIKKGLSYL---NKEEYEIIE 104 Query: 73 DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 Y + + S I + ++KA I L Sbjct: 105 MRYFKRWSIEKIENNKYISKSSIYREIEKALIKIIERL 142 >UniRef50_B1HX03 Putative uncharacterized protein n=2 Tax=Bacillaceae RepID=B1HX03_LYSSC Length = 159 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 26/56 (46%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + + + + + ++ +Y G T + +A + IG +L++A ++ +L Sbjct: 99 VLTEIFELSPEERVIVYLHYYEGYTTVEIANLLGMNGNTIGSKLRRARMKLKTILE 154 >UniRef50_A6NVZ3 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVZ3_9BACE Length = 161 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 13 AWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLV 72 AW ++ + ++A +K + +P C D + + + L + ++ Sbjct: 59 AWLMRVAINLCKNQLSAPWKRRWEELDEDQP-CFDQEESAVLEAVNGLPVKYRE---VIH 114 Query: 73 DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 YYV G + +A +G + +L + + +L Sbjct: 115 LYYVEGYSTAEIASLLGRGEGAVRVQLSRGRERLRRVL 152 >UniRef50_C1ZJD3 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZJD3_PLALI Length = 233 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 A L + D ++++ + GMTF +A S + R + A + +L AL+ Sbjct: 170 AALTELPVDQAEVVILKFWEGMTFQEIASVMGESPNTVASRYRYAIAKLARLLRALE 226 >UniRef50_D1CEP2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CEP2_THET1 Length = 376 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 9/103 (8%) Query: 13 AWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCC-----DDDAMIICGCMARLKKNNSDL 67 W+ + G ++ P+ ++ A I+ + L Sbjct: 68 RWSR-DRARDYRRMEIVGQDLSNRLELMEDPELSIELEREELATILDEALRHLPAETR-- 124 Query: 68 HDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +L+ + V GM +A K S+G + R+ + + ++ +L Sbjct: 125 -SILLQHVVEGMPQADIARKLGISEGAVAVRIHRGKLLLRKIL 166 >UniRef50_A7HUA1 RNA polymerase sigma factor n=2 Tax=Alphaproteobacteria RepID=A7HUA1_PARL1 Length = 222 Score = 41.5 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 10/90 (11%) Query: 32 KGLITSKVKSRPQCCDDDAMIICGCMA----------RLKKNNSDLHDLLVDYYVVGMTF 81 + S P ++A MA L D +++ ++ G+ Sbjct: 130 RERRPDFDPSDPMLQPEEARPADEEMAGAEIGLRVRAALVTLPPDQAEVVELSFLEGLPH 189 Query: 82 MSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++A + G + RL+ A + L Sbjct: 190 SAIAERLDIPLGTVKSRLRLAFARLRPALE 219 >UniRef50_A1TEV0 RNA polymerase sigma factor sigK n=12 Tax=Actinomycetales RepID=SIGK_MYCVP Length = 196 Score = 41.5 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 + T S S + DD+ + GC+ L + + Sbjct: 101 VRSEQAASTRESRYGAISVDPPSDHVADDVLLDDERRRVAGCLDSLTDVQRE---CIQLA 157 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 Y G+T+ +A + + I R++ + L Sbjct: 158 YYDGLTYAQVADRLAANLATIKSRMRDGIRALRKCL 193 >UniRef50_UPI00016C4E23 hypothetical protein GobsU_18637 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4E23 Length = 787 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 8/101 (7%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 A + V + AG + + A + ++RL L +V Sbjct: 97 ARRDGRGVALAPDTAGPIERPPDSSERV-----ELAAALDDELSRL---PEHLRGPVVLC 148 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 V G T A + S + +RL++A+ + L + Sbjct: 149 LVGGRTQEQAAAELGSSVRTLRRRLERAKAALRARLERRGV 189 >UniRef50_Q2RHE6 Sigma-24 (FecI-like) n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHE6_MOOTA Length = 204 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 ++ + +++ + G ++ +A C G + RL +A + L+ Sbjct: 127 DRLHRLIQALTPEYRVVVIMRDLQGFSYEEIASHLGCPVGTVKSRLSRARHFLRQHLVQE 186 Query: 114 D 114 Sbjct: 187 R 187 >UniRef50_C8VXG2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXG2_DESAS Length = 172 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 43 PQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 P +DA+ + + K +S ++++ +Y M +A + I RL++A Sbjct: 98 PSNNSNDALQDEALLLEIMKLSSKYKEVILLFYYQDMKIREIAEVLKTPEATISIRLKRA 157 Query: 103 EGIIE 107 I++ Sbjct: 158 REILK 162 >UniRef50_D2PM14 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PM14_9ACTO Length = 167 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 17/124 (13%) Query: 5 QMVLERWGAWAANNHEDVTWSS----IAAGFKGLITSKVKSRPQCCDDDAMI-------- 52 + + W W + + S+ I A +V+ D D + Sbjct: 47 EALARAWSKWGQYDATRGSASAWLLAITADQARKAARRVRPVADLADHDGVAPRADLDAR 106 Query: 53 --ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + L D YY ++ A CS+G + L A + +L Sbjct: 107 LDVEQALGVLSARQRLAVDC---YYFADLSVADTAAVMGCSEGTVKSTLSDARARLRRLL 163 Query: 111 MALD 114 + Sbjct: 164 EVSE 167 >UniRef50_A8SWM6 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SWM6_9FIRM Length = 643 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 67 LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 + ++ YY GM+ +A C +G + RL A G I+ Sbjct: 140 QYQTIIMYYFDGMSTSEIAACMECPEGTVSYRLSAARGKIKA 181 >UniRef50_D2MK89 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK89_9BACT Length = 969 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 21/52 (40%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 + LKK ++ +Y+ M+ ++ S + RL +A +E Sbjct: 131 SLLKKLPESERTVVTLFYLAEMSGAEISQFLGVSPNTVRSRLHRARQRLEKE 182 >UniRef50_A6TP54 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TP54_ALKMQ Length = 187 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 30/59 (50%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + ++ NS ++++ YY V +++ + S G + R+ +A+ I++ +M + Sbjct: 122 ILEQINHLNSHYKEVIILYYYVELSYDEIGTALNISPGTVKSRMFRAKKILKSKIMIAE 180 >UniRef50_A9FK16 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FK16_SORC5 Length = 211 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 3/58 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 + + RL V +V G+ + A S+ + + L+ A + Sbjct: 140 ALHRALDRLSTRRRMAF---VLRHVQGLEMLETAAALGVSESTVRRELESARAFLLKA 194 >UniRef50_B5HYZ4 RNA polymerase ECF-subfamily sigma factor n=2 Tax=Streptomyces RepID=B5HYZ4_9ACTO Length = 207 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 21/117 (17%) Query: 8 LERWGAWA--------------ANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMII 53 LE+ GAWA + A L+T++ K + + A + Sbjct: 82 LEQ-GAWAIVRRIVHNRLDAEGRGPAFVINGPIAQALDTALVTARDKLQKM---ESASGL 137 Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +A L +++V YV+G +A D +G L++A+ + L Sbjct: 138 YEAIADLPD---RQFEVIVLRYVLGYPTAKVAWYIGIDDRTVGHHLRRAKERLRLKL 191 >UniRef50_A4FQL5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FQL5_SACEN Length = 193 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 +A L + ++LV Y ++ +A S G + +A ++ Sbjct: 136 VVAALAELPPRQREVLVLRYYGDLSEAEIAEATGVSKGTVKSTASRALDALQR 188 >UniRef50_Q67QA6 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67QA6_SYMTH Length = 214 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 54 CGCMARLKKNNSDLH-DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 +AR + D + +V +Y G+ +A G + RL +A ++ L A Sbjct: 150 SQAVARAVRALPDGFRETVVLHYFEGLDAAEIARITGVRVGTVHSRLHRARQLLRRQLEA 209 >UniRef50_A9FFY4 ECF-family RNA polymerase sigma factor n=2 Tax=Myxococcales RepID=A9FFY4_SORC5 Length = 292 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 49 DAMIICGCMAR-LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + M + + R + + + + + L+ V M++ +A DG + R+ +A G + Sbjct: 218 EGMQLEAVVKRAIGQLDPEFREALILRDVEDMSYEEIASVTGLPDGTVKSRIHRARGQLR 277 Query: 108 GMLM 111 ++ Sbjct: 278 ALVE 281 >UniRef50_Q04U83 RNA polymerase sigma factor n=6 Tax=Leptospira RepID=Q04U83_LEPBJ Length = 207 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 42 RPQCCDDDAMIICGC--MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRL 99 + + D+ +I + L K +++ Y M++ +A + G + RL Sbjct: 132 KIELSDESNYLISKINGLEDLYK------EVIELRYFEEMSYAQIAEVLGTNVGTVKSRL 185 Query: 100 QKAEGIIE 107 KA+ ++ Sbjct: 186 FKAKEFLK 193 >UniRef50_C0Z4L0 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4L0_BREBN Length = 185 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 21/53 (39%) Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ + + +L +Y+ +++ + K S + RL A + L Sbjct: 123 QMMTLDKNHRAILDLHYLQHLSYREIGNKLSLSVDTVRMRLSYARKKLRDQLS 175 >UniRef50_UPI00016952BB RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016952BB Length = 180 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 20/53 (37%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 + + + + + YY T+ +A + S + RL +A+ + Sbjct: 120 VVQMMTQLPPNYRKTVELYYFYDKTYQDIAEEEGISVKTVESRLYRAKQWVRA 172 >UniRef50_A5I7E4 Putative glucitol operon regulator SorC n=10 Tax=Clostridium RepID=A5I7E4_CLOBH Length = 323 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 +K ++ L+ + YY+ MT +A + I + L+KA E ++ ++I+ Sbjct: 1 MKYDDRILYKVAQMYYIDNMTQSEIAKRLGQYRTTISRMLKKAR---EEGIVTINIKNNF 57 Query: 120 D 120 D Sbjct: 58 D 58 >UniRef50_C6PEP5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PEP5_CLOTS Length = 185 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 24/56 (42%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 ++K+ ++ D++ Y G + +A ++ + RL +A ++ L Sbjct: 121 RVSEKVKELKTEYADIISLKYYYGYSNKDIANLLNITEDNVRVRLYRARQSLKNAL 176 >UniRef50_C6W4C0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W4C0_DYAFD Length = 204 Score = 41.1 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 5/54 (9%), Positives = 19/54 (35%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +++ ++ + Y V G +A ++ + +A ++ Sbjct: 126 EEILELIQRIKPVYKNVFLLYVVDGYNHREIADLLQINEATVRSHYVRARARLQ 179 >UniRef50_A8LDH0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Frankia sp. EAN1pec RepID=A8LDH0_FRASN Length = 301 Score = 41.1 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 11/104 (10%), Positives = 30/104 (28%), Gaps = 5/104 (4%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMI----ICGCMARLKKNNSDLHDL 70 A + + + + A +DA++ I + L + + Sbjct: 197 ARSGRARLEFPT-ADLLAAADGHPGAGAAVPGPEDAVLAALDIREVLEALGTLGPEQREC 255 Query: 71 LVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + ++ G++ A +G + +A + L Sbjct: 256 VTLRFLEGLSVRETARAMNKKEGAVRALQLRAVRTLARHLPTAR 299 >UniRef50_A6W1G9 Putative RNA polymerase ECF-type sigma factor n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1G9_MARMS Length = 199 Score = 41.1 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + I + +L+ N S ++ +VG++ L + CSD I K L ++ L Sbjct: 126 LSIEKLLLKLESNYSRQVEIFKLKQLVGLSTKELTELYKCSDSLIEKDLLFVRRWLKSKL 185 Query: 111 MAL 113 Sbjct: 186 HTS 188 >UniRef50_A6TQA4 RNA polymerase sigma factor n=61 Tax=Clostridia RepID=A6TQA4_ALKMQ Length = 258 Score = 41.1 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 48 DDAMIICGCMAR--LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGK 97 DD+ +I M + + + +++ Y T +A S + + Sbjct: 190 DDSEVIDKIMLKEVIGRLEPRERQIIILRYFKDKTQTEIAKVLGISQVQVSR 241 >UniRef50_D2MLJ7 Putative uncharacterized protein (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLJ7_9BACT Length = 399 Score = 41.1 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 54 CGCMARLKKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + L + + ++ +Y+ MT + S I RL++A+ ++ Sbjct: 84 HEIVKNLLQRLPESERTVVTLHYLGEMTAKEIGKFLGVSANTINSRLRRAKKRLQ 138 >UniRef50_C4DIN0 RNA polymerase sigma factor n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DIN0_9ACTO Length = 198 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 21/55 (38%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + L++ +V +Y+ M+ +A + +G + L + + L Sbjct: 125 LVEALRQVPEKQRRAVVLHYLGDMSVADIAAQTGAKEGTVKSWLHRGRSELARYL 179 >UniRef50_Q3BMR1 RNA polymerase ECF-type sigma factor n=2 Tax=Xanthomonas RepID=Q3BMR1_XANC5 Length = 188 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 22/63 (34%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + M++ +L + + +VG + A + S + + L+ A + Sbjct: 126 EALMLVADAFDKLAQVDERKARAFALTELVGFSVAEAAEQLEVSVPTLERDLRFARVWLA 185 Query: 108 GML 110 L Sbjct: 186 AQL 188 >UniRef50_B4CW59 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW59_9BACT Length = 213 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 26 SIAAGFKGLITSKVKSRPQCCDDDAM-IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSL 84 +IA G S+++ + D + I +A+L + +V + G+ + + Sbjct: 124 NIAPGAATAPKSEMEPAERISDKEIRQRIDEAIAKLS---PEHRTAIVMREIDGLEYTEI 180 Query: 85 AGKHCCSDGYIGKRLQKAEGIIEGML 110 A + CS G + RL A ++ +L Sbjct: 181 AEQMGCSLGTVMSRLFYARKKLQALL 206 >UniRef50_B8GMC2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GMC2_THISH Length = 214 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 DA+++ C+ +L+ D + Y G++ +A + + G + +++ + Sbjct: 152 DAVLLRECLKQLR---EDQRRCIEIAYFEGLSHGEVAERTGNALGTVKTWIRRGLQELRR 208 Query: 109 MLMAL 113 L A Sbjct: 209 CLDAS 213 >UniRef50_Q1AW69 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW69_RUBXD Length = 264 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + A + L+ + ++ YY G+T + ++G I + L++A + Sbjct: 199 ETAELRERLAEALESLSERERVVITFYYYQGLTLREIGRALNLTEGRISQILRRALQRLR 258 Query: 108 GMLMA 112 L Sbjct: 259 DRLSG 263 >UniRef50_B2A1W3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Clostridia RepID=B2A1W3_NATTJ Length = 178 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 LK + ++ Y +G T +AG +G + RL K I+ L ++ Sbjct: 119 LKDLHPQDRLIIHLKYYMGYTLDEIAGLVNLPEGTVRTRLYKNLKILRKKLEIKEV 174 >UniRef50_C8WTP6 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP6_ALIAD Length = 177 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 1/68 (1%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D ++ I L K + + ++V G+ + +A G + RL A + Sbjct: 108 DAASLRID-LERALAKLSPEHRTVIVLRAFHGLEYDEIAEVLDIPIGTVRSRLHHARMQL 166 Query: 107 EGMLMALD 114 L Sbjct: 167 RMYLSGER 174 >UniRef50_C7QA49 RNA polymerase sigma factor n=7 Tax=Actinobacteria (class) RepID=C7QA49_CATAD Length = 411 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ + L + + ++ YY GMT + S+ + + KA + G L Sbjct: 352 LLARAVNSLPERDK---TVVTLYYFEGMTLAQIGEVLGVSESRVCQIHTKAVLTLRGKLS 408 Query: 112 ALD 114 A + Sbjct: 409 AKE 411 >UniRef50_UPI0001C37DE6 hypothetical protein RflaF_03772 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37DE6 Length = 172 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 24/59 (40%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + + + D+L+ +V G ++ + I KR+Q+A+ + ++ Sbjct: 111 FDSVIEAIGHLKDECRDVLMLKFVYGYNTREMSDILGITSDNIYKRIQRAKAELARIIE 169 >UniRef50_B2TK38 RNA polymerase sigma-70 factor n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TK38_CLOBB Length = 233 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 18/44 (40%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 L + DL +L+V YY +A ++ + RL + Sbjct: 180 LNVIDKDLRELIVLYYFDDTPQKEIAKILNINEVTVRTRLLRGR 223 >UniRef50_A6GKI7 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKI7_9DELT Length = 199 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 11/98 (11%) Query: 20 EDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGM 79 D + + A ++ R D + +A L + + + V + G+ Sbjct: 112 SDPRFLAYAYSCPESAAARDGLR------DGLR--KALAELAEVDRK---VFVLRELEGL 160 Query: 80 TFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 T +A + + RL +A + G LD+ L Sbjct: 161 TAPEIAETLGLTVSAVKSRLHRARAQLRGACSRLDVAL 198 >UniRef50_C3RL12 RNA polymerase n=2 Tax=Bacteria RepID=C3RL12_9MOLU Length = 159 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 13 AWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLV 72 W ++ +++ + +K ++ + Q + D + + + +L ++ Sbjct: 62 RWLLRVCINLCKNNLKSYWKRNVSVFEEEFYQLENSD-LKLQELVFKLA---PKYKGVIH 117 Query: 73 DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 YY G + ++ S+ + +RL++A ++ L A Sbjct: 118 LYYYEGYSVKEISVILKISEAAVKQRLKRARTKLKIELEAE 158 >UniRef50_A0NZ04 Sigma-24 (FecI) n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NZ04_9RHOB Length = 190 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 7/93 (7%) Query: 34 LITSKVKSRPQCCDDDAMIIC------GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGK 87 L +P D A + A L + + +++ + G + +A Sbjct: 99 LDPEDPSLQPTPLPDIAEEMDARLRENRVRAALSQLPEEQRNVVRLAFFAGQSHSEIAEY 158 Query: 88 HCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 G + R++ A G + +L D +++D Sbjct: 159 TGLPLGTVKSRIRLAFGRLRQLLET-DSSVDVD 190 >UniRef50_B9XLI4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XLI4_9BACT Length = 567 Score = 40.7 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 7/97 (7%) Query: 14 WAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVD 73 W A + + + D + + L + + L+ Sbjct: 83 WWRGESRRQRREQTAIALETTMKTPAADSHALSD----ALDEALLALPERDRQA---LLL 135 Query: 74 YYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + G + + KR+ KA + G+L Sbjct: 136 RFFEGRNHREVGLALGIGEDAARKRVDKALDQLSGIL 172 >UniRef50_UPI00016C52BB WD-40 repeat n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C52BB Length = 1114 Score = 40.7 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + ++ + +L + LV Y G T A + C G + RL +A ++ Sbjct: 142 ELGGVLDEELGQLPARFREP---LVLCYFQGKTHADAARQLGCPVGTVSGRLARACELLR 198 Query: 108 GMLMALDIRLEM 119 L + L + Sbjct: 199 DRLARRGVALAV 210 >UniRef50_A6WZK6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Ochrobactrum anthropi ATCC 49188 RepID=A6WZK6_OCHA4 Length = 181 Score = 40.7 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 42 RPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 + D+ I C +++ + + YV G++++ LA + + L++ Sbjct: 114 KEVLARDEGRRIDDC---MRELDQVHAKAVRQAYVEGLSYLELAQELQVPLNTVRTWLRR 170 Query: 102 AEGIIEGMLMA 112 + + + Sbjct: 171 SLLKLRECMQR 181 >UniRef50_B9XQQ4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XQQ4_9BACT Length = 482 Score = 40.7 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 + + L + + D L+ Y + +A SD KR+ +A + + Sbjct: 129 LDKALGELSEPDR---DALLLRYFERKSAREMAQALGVSDEAAQKRVNRAVERLRELFSK 185 Query: 113 LDIR 116 ++ Sbjct: 186 RNVT 189 >UniRef50_C7I208 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thiomonas intermedia K12 RepID=C7I208_THIIN Length = 187 Score = 40.7 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 14/85 (16%) Query: 37 SKVKSRPQCCDD---DAMI--------ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLA 85 + P+ DD +A++ + C+ +L+ DLL YV+G + +A Sbjct: 101 DEADDPPEIADDRTPEALLEARLQGQPMEDCLGQLQ---PRQRDLLAATYVLGQSHAEVA 157 Query: 86 GKHCCSDGYIGKRLQKAEGIIEGML 110 + G + +++A + L Sbjct: 158 RERALPLGTVKTLIRRAVLFLRDCL 182 >UniRef50_B8EQK9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylocella silvestris BL2 RepID=B8EQK9_METSB Length = 171 Score = 40.7 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 + + L + + + V G + M +A + S + K+L +A Sbjct: 109 ALDRALEELT---PRARQIFLMHRVYGASNMEIARRLGISVSAVEKQLARALR 158 >UniRef50_C6VSK7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSK7_DYAFD Length = 192 Score = 40.7 bits (94), Expect = 0.016, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 3/78 (3%) Query: 29 AGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKH 88 + F L + Q D +I + RL + + +++ +A + Sbjct: 98 SRFTDLDEAGDIMPEQPDDYRYALIDEAIDRL---PPQQRQVYMLSRHQRLSYSEIALRM 154 Query: 89 CCSDGYIGKRLQKAEGII 106 S + K LQ A I Sbjct: 155 GLSRETVKKYLQIATASI 172 >UniRef50_D0D7I5 Transcriptional regulator, DeoR family n=1 Tax=Citreicella sp. SE45 RepID=D0D7I5_9RHOB Length = 316 Score = 40.7 bits (94), Expect = 0.016, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 16/40 (40%) Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + + ++ YY+ G +A + S + L+ A Sbjct: 9 DRIVAEIAWLYYIKGYNQAEIAKRMNLSRPTVITYLRLAR 48 >UniRef50_A9GGR2 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GGR2_SORC5 Length = 321 Score = 40.7 bits (94), Expect = 0.016, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 6/71 (8%) Query: 47 DDDAMIICGCMAR------LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQ 100 DD I R + + ++ YY G + + + + + Sbjct: 249 DDPIEAISAQATRRALSFAIARLPERERRVIGMYYFEGAKLKDIGAELGIGEPRVSQLHT 308 Query: 101 KAEGIIEGMLM 111 +A G++ GML Sbjct: 309 RALGMLRGMLS 319 >UniRef50_C4XNK9 RNA polymerase ECF-type sigma factor n=2 Tax=Desulfovibrio RepID=C4XNK9_DESMR Length = 188 Score = 40.3 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 11/96 (11%) Query: 16 ANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMI--IC--GCMARLKKNNSDLHDLL 71 ++ S++ GF I + DDA+I I A + + ++L Sbjct: 88 KQGRVEIPASALHDGFMENIQDE-------TADDALIEKIDSEKLFAAMDALGLETREVL 140 Query: 72 VDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + Y G++ +A S + R+ + + Sbjct: 141 ILRYQEGLSIQDIADALKISVSAVKMRISRGLERLR 176 >UniRef50_A9G5S7 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G5S7_SORC5 Length = 239 Score = 40.3 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 D+++ +Y + +A K S+ + RL +A + +L A E+ Sbjct: 183 DVVLAHYHEDLGLQEIAQKLAVSESAVRSRLHRARVRLRAILNATAFGREI 233 >UniRef50_D1CEA8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CEA8_THET1 Length = 196 Score = 40.3 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 50 AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 + + L++ + +L Y G+T +A K G I R++ A + Sbjct: 126 GIRRNIVLEALRELPENQRKVLEMSYFGGLTQSEIADKVGEPLGTIKTRMRLALQHLRRN 185 Query: 110 LMALDIRLE 118 L+ I+ E Sbjct: 186 LIEKGIKPE 194 >UniRef50_UPI000178951B RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178951B Length = 308 Score = 40.3 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 21/59 (35%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 L+ ++V +Y+ + + S + R+++A +++ L Sbjct: 118 DSVWGALQGLEEKSKSVVVLHYLSEWSMKEIGQFLNMSVSAVESRIRRAREVLKQHLAR 176 >UniRef50_A6GAW6 RNA polymerase sigma-70 factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAW6_9DELT Length = 211 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 29/58 (50%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + ++ + ++ L +Y G++ +A +G I +RLQ+A ++ +++ L Sbjct: 123 LLVAMRHLSLEMQIALELHYWEGLSVREIALVTETPEGTIKRRLQRARMKLDELIVQL 180 >UniRef50_Q2BDP2 RNA polymerase ECF-type sigma factor n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BDP2_9BACI Length = 182 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 7/88 (7%) Query: 28 AAGFKGLITSKVKSRPQCCD----DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMS 83 K + D D A I + L + ++ YY + Sbjct: 90 ILRKKQTVVPVEDIEYYLSDRFLGDPAQSISEAIGEL---DEKHRAPVILYYYEDFSVKE 146 Query: 84 LAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 +A S G + RL +A + L Sbjct: 147 IAELLEISTGTVKSRLNRARAKLSVYLS 174 >UniRef50_Q2JNT2 RNA polymerase sigma factor, ECF family n=2 Tax=Synechococcus RepID=Q2JNT2_SYNJB Length = 207 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 A L + + +L Y G++ +A + G + R ++A + G L AL Sbjct: 146 AALSQLPENQRQILELLYYQGLSQADIARQLGIPLGTVKTRSRQALCKLRGSLRAL 201 >UniRef50_Q0BWZ2 RNA polymerase sigma factor, ECF family n=3 Tax=Alphaproteobacteria RepID=Q0BWZ2_HYPNA Length = 181 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 17/118 (14%) Query: 12 GAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMI----------------ICG 55 G + + TW A + + + + RP+ DD ++ + Sbjct: 62 GMYDRSQASVSTWIFRIARNRRIDAQRRQRRPELSGDDPILRPPEIETPDQAVSRDQLDT 121 Query: 56 CMA-RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 + RL D L+ + G++ +A G + R++ A ++G L Sbjct: 122 AVRKRLTCLPQDQLILIQAAFYDGLSHSEIARAFNLPLGTVKSRIRLAFMRLKGELEG 179 >UniRef50_C5RXP4 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Thermoanaerobacter RepID=C5RXP4_9THEO Length = 78 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 LK+ N ++V Y ++ ++ G + RL +A + Sbjct: 31 LKQLNPTYRQIVVLKYYNDLSENEISKYLSVPLGTVKNRLYRARMFLR 78 >UniRef50_A3ZWG0 Probable ECF sigma factor AdsA n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWG0_9PLAN Length = 203 Score = 40.3 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 A L + D +++ YV G +A + SD + L + ++ +L ++R Sbjct: 145 AALAELREDQREVIRLKYVEGWPSKDIANELGKSDAAVRVLLTRTLKQLQAVLAEQELR 203 >UniRef50_C6BBI9 RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Burkholderiales RepID=C6BBI9_RALP1 Length = 271 Score = 40.3 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 A + C+ RL + ++ Y+ ++ LA G + +++ + Sbjct: 209 QQARALAECLKRL---DPKQRQVVSLAYLRDLSHSELAQALSLPLGTVKSWMRRGLDRLR 265 Query: 108 GMLMA 112 L A Sbjct: 266 ECLGA 270 >UniRef50_B5Y6J6 RNA polymerase sigma-E factor, putative n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6J6_COPPD Length = 179 Score = 40.3 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + L + +D D +V Y G T +A + + R++ + +L + Sbjct: 114 ELLNALSRIPTDQRDCIVLKYYYGFTSREIAEMLKVKEPTVKARIRYGLNKLSILLKGEE 173 >UniRef50_C6PW47 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PW47_9CLOT Length = 176 Score = 40.3 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 25/60 (41%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 D+ + G M + + + D ++++ +Y + +A + RL + + ++ Sbjct: 107 DELTLKEGIMQEISRLSEDFKEVVLLHYFQNLKLREIAEILDIKLSLVKYRLSEGKKFLK 166 >UniRef50_Q67L47 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67L47_SYMTH Length = 203 Score = 40.3 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 A L++ +LL+ Y + +A S G + RL +A + +L Sbjct: 140 AALRRLPPAERELLIRRYFFEESVAEIARDLGLSRGALDTRLWRARQNLRRLLS 193 >UniRef50_C5WFG0 DNA-directed RNA polymerase specialized sigma subunit n=11 Tax=Streptococcus RepID=C5WFG0_STRDG Length = 169 Score = 40.3 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 65 SDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + +++ YY G++ +A S + L + +++ L Sbjct: 112 PEKYRMVLSLYYFDGLSVKEIASILHKSLSSVKINLMRGRALLKEKL 158 >UniRef50_A7VU01 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VU01_9CLOT Length = 142 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 31 FKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCC 90 + I + DD A +A ++K LH ++V +Y+ G++ A Sbjct: 61 VRRYIPLEDAEHLTAADDPAAF--ELLAAIRKLPDKLHAVMVLHYLEGLSVEETASCLRI 118 Query: 91 SDGYIGKRLQKAEGIIEGMLMAL 113 S RL + ++ +L A Sbjct: 119 SIPAAKMRLARGRQRLKELLGAE 141 >UniRef50_UPI00016C3FE9 RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FE9 Length = 478 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 4/70 (5%) Query: 46 CDDDAMI-ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 D DA + + ++ L + + ++ ++ G T LA C + + + Sbjct: 122 TDTDARLDVDAALSALPRKYREP---VILCHLQGWTRRELADHLGCPESTAASLVARGLA 178 Query: 105 IIEGMLMALD 114 + L + Sbjct: 179 KLRRRLAGRE 188 >UniRef50_A9BQK2 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Comamonadaceae RepID=A9BQK2_DELAS Length = 196 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 39 VKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKR 98 P DD + L + ++LV YY M +A + G + R Sbjct: 98 PTPSPSALDDRL----DVVKALARIAPIHREVLVLYYFDDMPTAQMAEALDIAPGTVLSR 153 Query: 99 LQKAEGIIE 107 L +A ++ Sbjct: 154 LSRARDALK 162 >UniRef50_C7QIZ2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QIZ2_CATAD Length = 178 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 1/70 (1%) Query: 41 SRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQ 100 RP DD A+ + +A L + ++ Y + A S G + Sbjct: 95 DRPAVQDDAAVRL-TILAALAELAPRTRAVVALRYWEDQSVEQTAEALSISTGTVKSMSA 153 Query: 101 KAEGIIEGML 110 + + L Sbjct: 154 RGLAQLRERL 163 >UniRef50_A1SKP0 Sigma-70 region 4 domain protein n=1 Tax=Nocardioides sp. JS614 RepID=A1SKP0_NOCSJ Length = 171 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D D M + +A L ++V Y +T A S G + + + A + Sbjct: 96 DTDRMALRQALATLA---PRQRAVIVLRYYEDLTEKETAAVLGISVGTVKSQARDALARL 152 Query: 107 EGMLMALDIRLE 118 LD E Sbjct: 153 RATAPHLDDERE 164 >UniRef50_UPI00016C3B4B WD-40 repeat n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B4B Length = 1086 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 50 AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 + + + RL + LV Y++ +T +A + + + RL++ + Sbjct: 129 LLALDEELERLPPLYREP---LVLYHLEELTRDEIAARLGVPNATVKIRLERGRARLRTA 185 Query: 110 LMALDIRL 117 L + L Sbjct: 186 LTRRGVAL 193 >UniRef50_B8CQF6 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CQF6_SHEPW Length = 196 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 4/64 (6%) Query: 54 CGCMARLK----KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 + LK K +L +Y+ + +A G + RL +A + + Sbjct: 132 DEAIEGLKHGLSKLPPLEGQVLHLFYLEEQSIAEIARILEIPKGTVKSRLFRARKLFKQH 191 Query: 110 LMAL 113 L Sbjct: 192 LEQE 195 >UniRef50_D2B4L5 RNA polymerase, sigma-24 subunit, ECF subfamily n=12 Tax=Actinomycetales RepID=D2B4L5_STRRD Length = 172 Score = 40.3 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 2/57 (3%) Query: 53 ICGCMAR--LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + + R L + ++V + + A CS G + + A G + Sbjct: 96 VDRIVLRQALMRLTPRQRAVIVLRFYEDRSERETAELLNCSLGTVKSQTHHALGRLR 152 >UniRef50_A3TGP1 Putative RNA polymerase sigma factor n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TGP1_9MICO Length = 165 Score = 40.3 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 24/82 (29%), Gaps = 3/82 (3%) Query: 35 ITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGY 94 + + +S D + L + +V + ++ +A S G Sbjct: 85 VPERGRSD---SADRVALADQLTTALAQLPVRERQCVVLRHHADLSEREVADTLNISTGT 141 Query: 95 IGKRLQKAEGIIEGMLMALDIR 116 + + + +L +R Sbjct: 142 VKSSTSRGLARLRTLLATEGVR 163 >UniRef50_C4RGL0 RNA polymerase sigma factor n=3 Tax=Micromonospora RepID=C4RGL0_9ACTO Length = 294 Score = 40.3 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 L + +L + +T +A + S ++ + L +A + G L Sbjct: 240 LATLDEREQKILTLRFYGNLTQSQIADQIGVSQMHVSRLLARALTKLRGQLDG 292 >UniRef50_A3TLI1 Putative RNA polymerase sigma factor n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TLI1_9MICO Length = 174 Score = 40.3 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 19/53 (35%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 + L + ++V Y + ++ +A + S G + +A + Sbjct: 111 DSIVHELAGLSDRERTIVVLRYYLDLSERQVAEELDISVGTVKSTCSRAIARL 163 >UniRef50_A8MM86 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MM86_ALKOO Length = 192 Score = 40.3 bits (93), Expect = 0.022, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 22/48 (45%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 L + +S+ ++LV Y+ G + +A G + R+ + ++ Sbjct: 138 LYQLDSNHREVLVLKYITGYSQEEIAEILSIPIGTVKSRIYRGLKLLR 185 >UniRef50_A4JX61 Putative uncharacterized protein n=1 Tax=Burkholderia phage phi644-2 RepID=A4JX61_9CAUD Length = 139 Score = 39.9 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 4/128 (3%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDI++ LE WG A G + + S K Q D + + Sbjct: 3 RDIEIRLENWGKAQRTGAGGGRAIGSAEG-RYVAPSIEKRVAQVTVIDLLDADEVEQAWR 61 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDG---YIGKRLQKAEGIIEGMLMALDIRLE 118 K ++L +Y++ M + K L A+ IE +L + + Sbjct: 62 KIMPFDKEVLRMHYILRMDPRVICRKLRIPHRPVSTFNMALSHAKREIEKVLDRMTEKRR 121 Query: 119 MDIVVNNS 126 + Sbjct: 122 AHVARQKE 129 >UniRef50_Q8RD63 Transcriptional regulator, contains sigma factor-related N-terminal domain n=2 Tax=Thermoanaerobacteraceae RepID=Q8RD63_THETN Length = 313 Score = 39.9 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG----IIEGMLMALDIRL 117 + + YY G+T +A K S ++ K L+KAE ++ + ++ Sbjct: 6 HLFQKISLVAELYYTYGLTQQQIADKLQISRPWVSKLLKKAEELGLVRVDVITSTSGVK- 64 Query: 118 EMDIVVNNS 126 E++ + Sbjct: 65 ELEEEIQKK 73 >UniRef50_Q8ELX2 RNA polymerase ECF-type sigma factor n=1 Tax=Oceanobacillus iheyensis RepID=Q8ELX2_OCEIH Length = 179 Score = 39.9 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 10/105 (9%), Positives = 34/105 (32%), Gaps = 17/105 (16%) Query: 24 WSSIAAGFKGLITSKVKSRPQCCDDDAM--------------IICGCMARLKKNNSDLHD 69 + + L+ + +S + + + + L++++ Sbjct: 74 YRILINESNRLLRKRTRSEVTIDSEQLLDYLGRQSTQSKPLDELDEAIDELEEHHK---T 130 Query: 70 LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 +++ Y+ G + +A + + RL +A + L + Sbjct: 131 VIILKYLNGFSEKEIAEILELNQNTVKSRLYQARNKLRSKLGGRE 175 >UniRef50_C7Q212 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q212_CATAD Length = 177 Score = 39.9 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 DD A+ + + L ++V + +T A + G + + +A I Sbjct: 104 SDDAALRL-AVRSALDTLPPRARAVVVLRFWEDLTVDQTADALGITPGTVKSQTSRAIAI 162 Query: 106 IEGMLMALDIRLEMD 120 + L A L D Sbjct: 163 LRQRLGAAVSELIHD 177 >UniRef50_B9XLL1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XLL1_9BACT Length = 535 Score = 39.9 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 ++ M +LK+ + + ++ Y F + S+ R+++A + +L Sbjct: 113 RVLDELMHQLKEGDREA---ILLRYFEDRPFAEVGTSLGVSENAARMRVERALEKLRNLL 169 Query: 111 MALDIRL 117 I L Sbjct: 170 TGRGIVL 176 >UniRef50_B0P437 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P437_9CLOT Length = 171 Score = 39.9 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 14/115 (12%) Query: 9 ERWGAWAANNHEDVTWSSIAAGFKGLITS-------KVKSRPQCCD---DDAMIICGCMA 58 ++ AW + + + + T + S D +D I+ + Sbjct: 53 RKFKAWIFQILANECYQILRNRKRQEPTDPFEFPEQEHSSDYWTEDMVSEDGEILS-YIL 111 Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 R+ K + + +L+ YY + +A G + RL + ++ +L Sbjct: 112 RMPKQHQE---VLILYYYDEFSTKEIAKILDIPQGTVKSRLARGRKQLKDLLEME 163 >UniRef50_A3I721 RNA polymerase sigma-70 factor n=2 Tax=Bacillaceae RepID=A3I721_9BACI Length = 157 Score = 39.9 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 LK+ L ++ ++ ++ + +A G + RL KA II L Sbjct: 90 LKQLPEKLMAVVTLRFIGELSLVEIAETLKIPVGTVKSRLHKALKIIRKKLEQNQ 144 >UniRef50_UPI00016C58E5 RNA polymerase sigma-H factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C58E5 Length = 586 Score = 39.9 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 34 LITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDL-LVDYYVVGMTFMSLAGKHCCSD 92 L + R C ++ + RL D + L L+ YV G T A S Sbjct: 124 LPAPDLSWREACD-----LLHAELDRL----PDCYRLPLLLCYVEGYTRDEAATALGVSS 174 Query: 93 GYIGKRLQKAEGIIEGMLMALDIRL 117 G + R+++ ++ L + L Sbjct: 175 GAVKGRVRRGCVLLGRRLSRWGVSL 199 >UniRef50_Q7UR06 Similar to RNA polymerase sigma-E factor n=1 Tax=Rhodopirellula baltica RepID=Q7UR06_RHOBA Length = 207 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 ++A + M RL + ++ Y++ G ++ ++ S+ IG L +A Sbjct: 149 ENAEEVEHLMLRL---DPREASVVRMYHLEGKSYQEISQAVGLSENTIGPLLHRARA 202 >UniRef50_C6XU99 RNA polymerase sigma factor, sigma-70 family n=8 Tax=Sphingobacteriaceae RepID=C6XU99_PEDHD Length = 176 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 I +A L+ + + Y G + +A G + R+ A I++ L Sbjct: 110 INKALATLQP----EYYIPFVKYFEGYKYHEIAEMLEIPIGTVKTRIHVARQILKKYLKT 165 >UniRef50_B5IJW2 Group3 RNA polymerase sigma factor SigF1 n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IJW2_9CHRO Length = 257 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 A L L ++ + G ++ A S + +RL +A ++ G L+ Sbjct: 188 ALLAGLEEPLRQVVERVILAGWSYRRTASALNVSPMTVQRRLHRALALLRGCLI 241 >UniRef50_B0MG52 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MG52_9FIRM Length = 189 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 + + ++ + ++ +L+ YY G +F+ +A S+ KR A + + Sbjct: 121 LNVMVDKIGRLPTNQQTVLILYYYYGFSFLEIATLLQISELTAKKRCSLARSSLRALFEK 180 Query: 113 LDIRLE 118 + E Sbjct: 181 EGLSYE 186 >UniRef50_C9YZP2 Putative sigma factor n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YZP2_STRSW Length = 202 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 5/100 (5%) Query: 14 WAANN-HEDVTWSSIAAGFKGLITSKVKSRPQCCDDD-AMIICGCMARLKKNNSDLHDLL 71 W + + + + + D + ++++ +A L + + ++ Sbjct: 95 WVRSEARHRKDARADDSELHAIPDAGPGPDEAVVDRERSLLLHTALAGLPRPQRE---VV 151 Query: 72 VDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 Y G T+ A + +G RL+ A + L Sbjct: 152 HLAYFAGRTYRQAAVELGIPEGTAKTRLRSALRTLARSLA 191 >UniRef50_Q65D80 Putative uncharacterized protein n=3 Tax=Bacillus RepID=Q65D80_BACLD Length = 189 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 8/97 (8%) Query: 31 FKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCC 90 + DD + + + +L+K ++ +Y + +A Sbjct: 98 LMDRPLQDEGREQEMHADDRIGMLEAVQQLRKEYQTA---IILFYYHDLPIHDIAEVMNA 154 Query: 91 SDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNSN 127 +G + L++A+ ++ +L + D NN + Sbjct: 155 PEGTVKTYLKRAKLELKQLLTGGE-----DAWTNNGS 186 >UniRef50_A6GGQ3 Sigma-24 (FecI-like) protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GGQ3_9DELT Length = 200 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 DD+ +A L++ + +L YY +T A I RLQ+A ++ Sbjct: 113 DDE----QQLLAALRRIPVEHQVVLELYYWQELTTAQCAEVLEIPHSTIKSRLQRARKLL 168 Query: 107 EGMLMA 112 E L A Sbjct: 169 EEQLEA 174 >UniRef50_D1C5W0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W0_SPHTD Length = 237 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 3/77 (3%) Query: 35 ITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGY 94 DDD + L++ + +V + ++ +A + G Sbjct: 118 DPDPGALDLVLRDDDRRTVAAA---LQQLPPHQRETVVLRFYHDLSLNEIAEVTGVAVGT 174 Query: 95 IGKRLQKAEGIIEGMLM 111 + RL ++ +L+ Sbjct: 175 VKSRLFHGLRRLKTLLI 191 >UniRef50_C1P827 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus coagulans 36D1 RepID=C1P827_BACCO Length = 177 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 7/108 (6%) Query: 11 WGAWAANNHEDVTWSSIAAGFKGL-----ITSKVKSRPQCC-DDDAMIICGCMARLKKNN 64 + +W + + + + K + I + RP D+ + + ++K + Sbjct: 70 FASWMSKIVSHLCYDRLKKMRKKVDLQAEIEEEPLRRPTSNIDNANLRFD-IRSAMEKLS 128 Query: 65 SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 + +V + G ++ +A G + R+ A I++ L Sbjct: 129 PEHRAAIVLRDIQGYSYEEIADILNIPLGTVKSRINTARNILKKELSR 176 >UniRef50_C4VHN7 Sigma-70, region 4 family n=11 Tax=Firmicutes RepID=C4VHN7_ENTFA Length = 140 Score = 39.9 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 6/56 (10%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++ + L +N ++++ +Y + M+ + +A + + + +I+ Sbjct: 80 LLSEALRHLPENKR---NIILLHYFMDMSDVEIAELLNVNRSTVYRHRISGLAMIK 132 >UniRef50_Q2J6Q1 Sigma-24 n=7 Tax=Actinomycetales RepID=Q2J6Q1_FRASC Length = 185 Score = 39.9 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 20/59 (33%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + L++ + +V Y M+ A CS G + + + G L L Sbjct: 127 VIQALRELPRRQREAVVLRYYADMSEADAAAVMGCSVGSVKAYTSRGLSALSGKLEGLR 185 >UniRef50_C4G621 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G621_ABIDE Length = 181 Score = 39.9 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 L DL L + Y G T LA ++ S + L +A ++ + Sbjct: 129 LSSLPPDLSGLFIRRYFEGYTSKELAEEYGLSPSGVRAALSRARKLLSKKMS 180 >UniRef50_Q2RFZ5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RFZ5_MOOTA Length = 200 Score = 39.9 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + L + + LV + G ++ +A CS G + RL +A ++ Sbjct: 131 SALNQLPPEYRTALVLRELQGYSYEEIASILGCSLGTVKSRLNRARQAMK 180 >UniRef50_C7Q8T4 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q8T4_CATAD Length = 192 Score = 39.9 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 19/53 (35%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +A L++ ++V Y T +A S G + + KA + Sbjct: 107 DLIAALRQLPRGQRAVVVLRYFEDRTDEDIAEVLGISTGTVRSQHHKALKALR 159 >UniRef50_A7LV33 Putative uncharacterized protein n=4 Tax=Bacteroidales RepID=A7LV33_BACOV Length = 182 Score = 39.9 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 27/68 (39%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ MA++ + ++ + Y+ G+ +A + S + +L + + L Sbjct: 113 LMAHVMAKINELPEKRREIFLLSYMEGLKAAEIAERLNLSTRTVENQLYRTLLFLRKELQ 172 Query: 112 ALDIRLEM 119 + L M Sbjct: 173 TAFVYLFM 180 >UniRef50_A6NQR6 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQR6_9BACE Length = 127 Score = 39.9 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D + + +ARL + DL +++ Y G+T A G + R ++A +++ Sbjct: 63 DNLPLKEAIARLPR---DLRAVVILRYFTGLTLAETAQALDIPQGTVVTRQRRALALLKL 119 Query: 109 MLM 111 L Sbjct: 120 ELS 122 >UniRef50_D1CFU8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFU8_THET1 Length = 191 Score = 39.9 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D ++I + RL N D ++ Y GM +A ++G + + +A + Sbjct: 128 DQLMIQKAINRL---NPDQQKVIRMRYSQGMKNREIAEVMGRTEGAVKLLIHRATNNLRA 184 Query: 109 MLMAL 113 + Sbjct: 185 QMSGA 189 >UniRef50_A6G817 RNA polymerase ECF-type sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G817_9DELT Length = 206 Score = 39.9 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D+ ++ + +++ DLL +Y G++ LA G + R+ A Sbjct: 111 NDERLQLL---LDAMQQIPLRQQDLLECHYFHGLSMAELAELFELKVGTVKSRMSSARRA 167 Query: 106 IEGMLMAL 113 + +AL Sbjct: 168 LLQAFVAL 175 >UniRef50_UPI0001788C67 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C67 Length = 177 Score = 39.9 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + L++ L ++ Y+ ++ +A G + RL KA I+ L Sbjct: 108 SLLQQLPDKLMAVVTLRYIGELSMAEIAETLKIPVGTVKSRLHKALKIMRKKLE 161 >UniRef50_C1AB78 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB78_GEMAT Length = 200 Score = 39.9 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 3/64 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + I +A L+ + ++ +V G ++ +A G + + +A + Sbjct: 136 ELGSAIERAIASLR---PEYRACIMLRHVEGRSYEEIATTLDLPLGTVKTYIHRARHELR 192 Query: 108 GMLM 111 L Sbjct: 193 RALE 196 >UniRef50_C0Z5J4 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5J4_BREBN Length = 218 Score = 39.9 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 6/58 (10%), Positives = 21/58 (36%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + ++ +++ +Y ++ +A S + RL +A ++ + Sbjct: 156 EEIVTYIQSLAPKYRQVILLHYYEDLSIAEVADILSVSQEVVRTRLHRARKQLKETMS 213 >UniRef50_B1KRU9 RNA polymerase sigma-70 factor family n=14 Tax=Clostridium RepID=B1KRU9_CLOBM Length = 187 Score = 39.9 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 I M +KK + + + + Y + ++A + I KRL + ++ L+ Sbjct: 124 EIFEVMNYMKKEDRE---IFIRRYFLDEKVENIAKILGVNRNLIDKRLSRGRKFLKEKLI 180 Query: 112 ALD 114 L Sbjct: 181 LLK 183 >UniRef50_C0GI27 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GI27_9FIRM Length = 170 Score = 39.9 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 43 PQCCDDDAMII-CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 D + + + L + ++L+ Y+ G++ ++ S G + RL + Sbjct: 94 CSSNDYETVELKDEVRQMLNSLDDSHREVLILRYMFGLSLSEISDMKDLSTGTVKSRLFR 153 Query: 102 AEGIIEG 108 A + Sbjct: 154 AREKLRK 160 >UniRef50_D2B866 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B866_STRRD Length = 171 Score = 39.9 bits (92), Expect = 0.028, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 2/71 (2%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D D + M L+ ++V Y + A CS G + + KA Sbjct: 95 TDVDLRRV--LMDALRALPPRQRAVVVLRYWEDLGETQTAEILGCSAGTVKSQASKALTK 152 Query: 106 IEGMLMALDIR 116 + + A + Sbjct: 153 LRSAIGAESVE 163 >UniRef50_B8FSU1 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Desulfitobacterium hafniense RepID=B8FSU1_DESHD Length = 171 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ + DL ++V Y G T A +G + R +KA ++ L Sbjct: 107 MAIQGLSEDLRKVIVLRYFGGYTIADTAALLGIPEGTVATRTRKALRLLRVELS 160 >UniRef50_B5HYM1 RNA polymerase ECF-subfamily sigma factor n=2 Tax=Streptomyces RepID=B5HYM1_9ACTO Length = 174 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 19/50 (38%) Query: 66 DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 +LV + + S+A + +G + RL A + L ++ Sbjct: 124 QQRQVLVLRFFADLPVRSIAQELGVPEGTVKSRLHTAVRALRARLHEDEV 173 >UniRef50_A8R836 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R836_9FIRM Length = 157 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 19/49 (38%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 L + ++ +Y+ G + +A CS I R+ + + + Sbjct: 102 LAQLPKKHQSAILLHYLEGYSIKEIAAMLHCSQSAIKMRIARGKAQLRK 150 >UniRef50_A7NRE4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NRE4_ROSCS Length = 195 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 53 ICGCMAR-LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + + R L+ + +L+ +V G++ A + S+G + + + + ML Sbjct: 126 LHQALRRALQALTEEQQQVLLLRFVAGLSIAEAAQQLQRSEGSVKQLQLRGLRALGRMLG 185 Query: 112 ALD 114 A + Sbjct: 186 AAE 188 >UniRef50_A2RP52 Putative uncharacterized protein ps612 n=2 Tax=Lactococcus lactis subsp. cremoris MG1363 RepID=A2RP52_LACLM Length = 100 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 23/50 (46%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 I +L + + ++V +++ + ++A + S+GYI K + Sbjct: 40 INKVFEQLNAEHPREYKIIVRHHLKRTYYTTIAREQGVSEGYIRKLAKNG 89 >UniRef50_C4DUZ6 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DUZ6_9ACTO Length = 206 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 17/55 (30%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 LK H + Y G ++ +A + + R++ + L Sbjct: 152 LKTLTELQHQAVTMAYYGGHSYRQVANLLGAAVPTVKSRIRDGLIRLRDCLEVSR 206 >UniRef50_B4WPS3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPS3_9SYNE Length = 242 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 14/40 (35%) Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 + N +L Y G++ ++A + S + Sbjct: 173 QVNEKWVAVLRLKYQEGLSDKAIAHQLGVSARTVRSYWLC 212 >UniRef50_D1BDV6 RNA polymerase sigma factor, sigma-70 family n=3 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BDV6_SANKS Length = 226 Score = 39.5 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 24/54 (44%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 A L++ + +V + +T +A + ++G + + + A + G+L Sbjct: 106 AALQRLSPRQRACVVLRHYDDLTVPQVADELGIAEGTVRRHVADAHAALRGLLA 159 >UniRef50_A6TSU8 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alkaliphilus RepID=A6TSU8_ALKMQ Length = 201 Score = 39.5 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +I + L + +++ + G ++ +A C++G I R+ +A ++ Sbjct: 132 RLIHDAINLLNY---EQRKVIILRDIEGFSYREIAEILDCAEGTIKSRINRARSNLK 185 >UniRef50_Q893M5 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=Q893M5_CLOTE Length = 175 Score = 39.5 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D +II + +LKK D ++LV Y+ +A + ++ ++ ++ Sbjct: 108 EDKIIIEELLEKLKK---DEREILVLRYLKDYPIKDVAFIMDIPVNTVKTKIYRSLKFLK 164 >UniRef50_Q1AXH1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXH1_RUBXD Length = 195 Score = 39.5 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 +A+ + ++RL + +LLV Y G+T ++ G + R A + Sbjct: 133 EALDVAEALSRLS---PEHRELLVLAYFRGLTQREISEATGLPLGTVKSRTSAALRSLRR 189 Query: 109 MLMA 112 L Sbjct: 190 RLEG 193 >UniRef50_Q24VG6 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24VG6_DESHY Length = 175 Score = 39.5 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 36 TSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 T VKS + + I + +K + + +D++ Y G+T +A + + I Sbjct: 96 TQGVKSSMMRTRQEVIRIERAVETIK--DDEYYDVIPMKYWDGLTIEEIAERLGREEKTI 153 Query: 96 GK 97 + Sbjct: 154 RR 155 >UniRef50_B6A2T8 RNA polymerase, sigma-24 subunit, ECF subfamily n=9 Tax=Rhizobiales RepID=B6A2T8_RHILW Length = 174 Score = 39.5 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 2/88 (2%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGK 87 A F+ P DD+ + A ++ D ++ Y G++ + A Sbjct: 89 AQTFRAYAAEPQPDAPGANDDE--LSSELWAAVRALPERQCDAVLLVYGEGLSHSAAADV 146 Query: 88 HCCSDGYIGKRLQKAEGIIEGMLMALDI 115 CS+ + ++ +A ++ ML ++ Sbjct: 147 MGCSETTVSWQVHEARKRLKAMLGKEEV 174 >UniRef50_C3QA70 RNA polymerase ECF-type sigma factor n=5 Tax=Bacteroides RepID=C3QA70_9BACE Length = 187 Score = 39.5 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D+ M I M +L + +L + Y+ + +A + S + K + KA +I Sbjct: 123 DERMMHISKAMEKLTPHTRH---ILEECYIQRKKYQEVAEELNISVSAVRKHIVKALQVI 179 Query: 107 E 107 Sbjct: 180 R 180 >UniRef50_UPI00017455E9 RNA polymerase sigma-70 factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017455E9 Length = 185 Score = 39.5 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 3/76 (3%) Query: 37 SKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIG 96 + DD +A L ++L + +++ +A G + Sbjct: 96 GEASLALSQTDDRVTAARETIAGLS---PLQREILDLRFSQDLSYAEIAQVLGIPVGTVR 152 Query: 97 KRLQKAEGIIEGMLMA 112 RL A + L A Sbjct: 153 SRLHHAVAEVRHRLSA 168 >UniRef50_C7GAW8 RNA polymerase ECF-type sigma factor n=4 Tax=Clostridiales RepID=C7GAW8_9FIRM Length = 162 Score = 39.5 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 ++RL D + YY+ G + +AG ++ + RL +A ++ L + Sbjct: 100 EAISRLS---EDARLSVTLYYMEGYSVREIAGILGVTESAVKNRLSRARAKLKNELEQEN 156 >UniRef50_Q67R01 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67R01_SYMTH Length = 186 Score = 39.5 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 35/106 (33%), Gaps = 4/106 (3%) Query: 12 GAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLL 71 W D ++ + D ++ + +L + ++ Sbjct: 85 AWWRRLLPTDDPRAAGTPVEPDTAGDDPEEAVVLSDQRERLLD-YVMQLSDAYRE---VI 140 Query: 72 VDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 + YY +T + +A ++ + RL +A +++ ML + Sbjct: 141 ILYYYHDLTTVEIAEVTGQNENTVKTRLFRARAMLKQMLQKGGVAR 186 >UniRef50_C6CXS0 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily n=4 Tax=Bacillales RepID=C6CXS0_PAESJ Length = 258 Score = 39.5 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Query: 33 GLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSD 92 G + S + D+ + + MA+LK + +LV Y G + +A + S Sbjct: 177 GDVISDHSDKYSHVDNQ-IALSDAMAQLK---EEERKVLVLVYQHGQSQREIADQLGVSQ 232 Query: 93 GYIGKRLQKAEGIIEGMLM 111 + + ++A + +L Sbjct: 233 MSVSRFQKRALDKLRQLLH 251 >UniRef50_B1ZUQ2 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZUQ2_OPITP Length = 171 Score = 39.5 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 A L++ ++ ++LV +TF +A + S R + A G ++ L A D Sbjct: 112 AALRQLPAEQREVLVLKLWGELTFAEIARELDLSPNTAASRYRYALGALKEHLTAADC 169 >UniRef50_C3JBB6 RNA polymerase sigma-70 factor, ECF family n=2 Tax=Bacteria RepID=C3JBB6_9PORP Length = 195 Score = 39.5 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 ++ C+ARL K + D+L+ Y M+F +A S R++ A + M Sbjct: 134 LLHSCVARLPK---EQRDVLILRYHKDMSFKEIADYTGVSINTALGRMRYALMNLRKM 188 >UniRef50_A9AXF5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXF5_HERA2 Length = 175 Score = 39.5 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%) Query: 66 DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 L ++V Y +++ +A C G + RL A + L Sbjct: 128 KLRSVIVLRYFHDLSYEQIAAILECPIGTVRSRLHTAHAQLRNHLE 173 >UniRef50_UPI0001B4EB16 ECF subfamily RNA polymerase sigma factor n=1 Tax=Streptomyces sp. C RepID=UPI0001B4EB16 Length = 197 Score = 39.5 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 38 KVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGK 97 + SR Q I G + + +D+++ +V+G+ +A S + Sbjct: 114 RRASRRQLKAQQVSTI-GLYEAIAELPERHYDVVLLTFVLGLERRRVAQLMGISPTTVRS 172 Query: 98 RLQKAEGII 106 + A + Sbjct: 173 HIHTARRTL 181 >UniRef50_UPI00016C5912 WD-40 repeat n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5912 Length = 962 Score = 39.5 bits (91), Expect = 0.033, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + +A+L DL +++ Y G+T A + + + R+ +A G++ L Sbjct: 139 ALDEELAQLPD---DLRAVVLLCYFQGLTQDETAAQLGWTARTVKARVARARGLLRARLT 195 Query: 112 ALDIR 116 I Sbjct: 196 RRGIE 200 >UniRef50_Q6MMC2 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMC2_BDEBA Length = 190 Score = 39.5 bits (91), Expect = 0.033, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 21/56 (37%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 A L+ ++L Y+ M + +A S+ I + + ++ + G Sbjct: 128 DEAEALLQDLKPREQEILRLRYLDEMEYNEIAALLQESESNIRQIVSRSLKFLRGQ 183 >UniRef50_A1TYG1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TYG1_MARAV Length = 171 Score = 39.5 bits (91), Expect = 0.033, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 50 AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 ++ M RL D LL+ + V G +A + G + RL ++ + Sbjct: 99 GFMLDEAMDRLS---PDQRTLLLLHDVDGWRQEDVAEVLGVAVGTVKSRLHRSRATLRKY 155 Query: 110 LMA 112 L Sbjct: 156 LQQ 158 >UniRef50_C7PH07 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PH07_CHIPD Length = 190 Score = 39.5 bits (91), Expect = 0.034, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 48 DDAMIICGCMAR-LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++A I+ + + L K S +++ + G +F +A K +A + Sbjct: 113 EEAAILSAQIRQALSKLTSRQREIIWFRFFEGRSFEEIAEIMDMQVRATYKLSARALASL 172 Query: 107 E 107 + Sbjct: 173 K 173 >UniRef50_B1TBB4 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TBB4_9BURK Length = 266 Score = 39.5 bits (91), Expect = 0.034, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 ++ ++ +Y G+ F +A S G I + + A + L A++ Sbjct: 201 RLADAVRHLPERTRKIIQYHYFHGLAFEQIADILGVSKGRISQLHRAALAELRERLGAVE 260 >UniRef50_D0LTI3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTI3_HALO1 Length = 228 Score = 39.5 bits (91), Expect = 0.035, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 20/58 (34%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L+ + +LL Y ++ +A RL++A+ + L Sbjct: 166 LLDALRSLPLQMQELLEFRYQQDLSIREIAEILGIEVSATKSRLRRAKEALRRALGTS 223 >UniRef50_D1PVX2 Putative uncharacterized protein n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PVX2_9BACT Length = 170 Score = 39.5 bits (91), Expect = 0.035, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 1/66 (1%) Query: 46 CDDDA-MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 D D + ++K + ++ Y M + +A S + K + KA Sbjct: 98 DDTDGNEQMDVIYKTMEKMSPRTRLVVEQCYFENMKYAEVADLLGLSKDGVRKHIIKALA 157 Query: 105 IIEGML 110 ++ Sbjct: 158 MLRKAF 163 >UniRef50_A3TM98 Putative RNA polymerase ECF-subfamily sigma factor n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TM98_9MICO Length = 178 Score = 39.5 bits (91), Expect = 0.036, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 21/53 (39%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ARL++ + ++LV Y + ++ +A + G + + + Sbjct: 120 DLFARLQRLPARQREVLVLRYYLDLSEAQIAEALGIAPGSVKAHAHRGLAALR 172 >UniRef50_Q9L1Z6 Putative RNA polymerase sigma factor n=6 Tax=Streptomyces RepID=Q9L1Z6_STRCO Length = 208 Score = 39.5 bits (91), Expect = 0.036, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 47 DDDAMIICGCMARLKKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D+D ++ +A+ D +LV + + +A + +G + RL A Sbjct: 138 DEDTSVLSLAVAQGLDELPDAQRQVLVLRFYADLPVRGIAEELGIPEGTVKSRLHTAVRA 197 Query: 106 IEGMLMALDI 115 + L ++ Sbjct: 198 LRARLHEDEV 207 >UniRef50_Q67P79 RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67P79_SYMTH Length = 169 Score = 39.5 bits (91), Expect = 0.036, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 21/60 (35%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + LK + +V + +T +A +G + RL + + L + + Sbjct: 105 QLLEALKLLPPEQRATVVLRFFQDLTIPQIAQVMAVPEGTVKSRLHASLAKLRAALASSE 164 >UniRef50_B6R5P8 Transcriptional regulator, DeoR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5P8_9RHOB Length = 326 Score = 39.5 bits (91), Expect = 0.036, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 18/40 (45%) Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 ++ +LV +++ G + +A S + + +++ Sbjct: 13 TRQIYKVLVMHFIEGKSQAEIAKLIGVSHPKVNRMIKQGR 52 >UniRef50_A4C7J3 RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C7J3_9GAMM Length = 179 Score = 39.5 bits (91), Expect = 0.036, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 18/58 (31%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 +A + N + ++ + T + S + R A ++ L A Sbjct: 122 HVIAAMNTLNVEQRSVIELKFFHHYTLEQIGELQNISTNTVKSRFYAALENLKPHLEA 179 >UniRef50_C6Y3L0 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y3L0_PEDHD Length = 188 Score = 39.5 bits (91), Expect = 0.037, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 17/46 (36%) Query: 65 SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + +Y ++ +A S G + +L +A ++ L Sbjct: 133 PAQQRIFRMHYHDDLSTQEIAKILKLSRGTVQNQLTRAVTLLRASL 178 >UniRef50_A7B9G5 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7B9G5_9ACTO Length = 327 Score = 39.5 bits (91), Expect = 0.037, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 18/44 (40%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 +++ + + + YY G++ +A + S + K L Sbjct: 1 MERRDEQSIEAVKLYYQQGLSQAEVATRMGLSRPTVAKLLAHGR 44 >UniRef50_Q6ANY1 Related to RNA polymerase sigma factor for flagellar operon n=1 Tax=Desulfotalea psychrophila RepID=Q6ANY1_DESPS Length = 242 Score = 39.1 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 +I GC+ARL+ N +LV Y G+ LA + CS ++ QK G ++ L Sbjct: 173 LIQGCLARLE--NPRQRLILVAKYFEGINVKKLADRFGCSRYFVESEEQKGLGQMQTCLE 230 Query: 112 AL 113 Sbjct: 231 KS 232 >UniRef50_Q474V4 Sigma-70 region 2:Sigma-70 region 4 n=8 Tax=Proteobacteria RepID=Q474V4_RALEJ Length = 227 Score = 39.1 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 15/109 (13%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDD------------DAMIICGCMARLKK 62 N D + AA + + DD A + C+ RL+ Sbjct: 119 VRNRALDCLRRAAAARVPQTVELDEELGEWLADDAAGPAELALASQQARALNRCLQRLE- 177 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 +V Y+ ++ L+ + G + +++ + L Sbjct: 178 --PAQRQAIVLAYLRDLSHAELSERLRLPLGTVKSWIRRGLERLRACLE 224 >UniRef50_B0P6T9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6T9_9FIRM Length = 97 Score = 39.1 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 6/40 (15%), Positives = 15/40 (37%) Query: 65 SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 ++ Y+ G + ++A + + +RL A Sbjct: 41 KRQRSVVELYFFKGKSRSAIARQLGIHPSTVSRRLAAARR 80 >UniRef50_UPI00016C5256 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5256 Length = 232 Score = 39.1 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 52 IICGCMARLKKNNSDLH-DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++ + RL +L +++ Y G+ + +A G + RL A + Sbjct: 150 LVRAAVDRL----PELLRQVVLLAYFQGLKYRDVADALGIPVGTVKSRLHAALAKL 201 >UniRef50_D2BBE7 RNA polymerase sigma factor n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BBE7_STRRD Length = 189 Score = 39.1 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 3/62 (4%) Query: 50 AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 + +ARL + ++V ++ ++ +A G + RL A + G Sbjct: 127 GERVQAALARLPLAQRE---VVVLSFLNDLSHREIAEVLEIPVGTVKSRLHHARATLRGC 183 Query: 110 LM 111 + Sbjct: 184 ID 185 >UniRef50_B9XBI4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=bacterium Ellin514 RepID=B9XBI4_9BACT Length = 549 Score = 39.1 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + M+ L + + L+ Y F ++ SD KR+ +A + L Sbjct: 127 ALDEAMSELS---EEAREALLLRYFKNSDFRTIGQCFKISDDTAQKRVSRALERLRQHLT 183 >UniRef50_C0VYK8 DeoR family transcriptional regulator n=4 Tax=Actinomycetales RepID=C0VYK8_9ACTO Length = 338 Score = 39.1 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + G + + ++D H+ YY+ G T ++A S + + L A Sbjct: 6 VHGTLYIVTIRDNDAHEAASMYYLQGETMETIARHLGVSRSSVSRLLAYAR 56 >UniRef50_C5C1C1 Transcriptional regulator, DeoR family n=5 Tax=Actinobacteria (class) RepID=C5C1C1_BEUC1 Length = 324 Score = 39.1 bits (90), Expect = 0.041, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 19/45 (42%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 + + +H++ YY+ T +A + S + + ++ A Sbjct: 1 MDARDELMHEVASMYYLQDQTMEGIARRLGVSRSTVSRLIKSARA 45 >UniRef50_Q2SH89 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH89_HAHCH Length = 197 Score = 39.1 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 41 SRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQ 100 R ++ I C+ L N + ++ Y G + +A + L+ Sbjct: 129 LREVVNSNEKCRIHRCLRSLDVLNR---NAILMAYYYGYSREDIAVHIEKPVNTVKIWLK 185 Query: 101 KAEGIIEGML 110 + G + L Sbjct: 186 RGLGRLAQCL 195 >UniRef50_C3QAU5 RNA polymerase ECF-type sigma factor n=4 Tax=Bacteroides RepID=C3QAU5_9BACE Length = 181 Score = 39.1 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 30/87 (34%), Gaps = 3/87 (3%) Query: 27 IAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAG 86 + F + + D ++ + +L + ++ L G+++ +A Sbjct: 88 LENWFNQQLEERKYKDCFDIDALTKVVNRAIEQLPERCREIFSLSRK---EGLSYRQIAE 144 Query: 87 KHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + S + ++ A I +L + Sbjct: 145 RLGISVKTVETQISIALKRIREILSSS 171 >UniRef50_UPI00016C38E8 RNA polymerase sigma-H factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C38E8 Length = 494 Score = 39.1 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 52 IICGCMARLKKNNSDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 ++ ++RL D + ++V + GMT A + +G + RL +A ++ L Sbjct: 192 VVDKELSRL----PDHYRVVVVLCDLEGMTRREAARQLDIPEGSVASRLARARAMLAKRL 247 Query: 111 MALDIRL 117 + L Sbjct: 248 TQRGVTL 254 >UniRef50_A6KX62 Putative RNA polymerase ECF-type sigma factor n=6 Tax=Bacteroides RepID=A6KX62_BACV8 Length = 193 Score = 39.1 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 18/53 (33%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 A + K Y MT+ +A S + + +QKA + L Sbjct: 129 ASISKLPPKCRQAFELSYFKEMTYKEIAEAMHISSRTVEEHVQKATKFLREDL 181 >UniRef50_UPI0001C312F5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312F5 Length = 189 Score = 39.1 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 7/94 (7%) Query: 24 WSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMS 83 W AAG + + + D M++ G +ARL + +++ ++ +G + Sbjct: 103 WDPSAAGMDSICEREPAADVV----DRMVVDGMLARLSRA---EAEVVRLHFHMGFSQSQ 155 Query: 84 LAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 + G + R+ A + ML L Sbjct: 156 IVAHTGIPLGTVKSRIASALRRLREMLEEERASL 189 >UniRef50_D2R452 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R452_9PLAN Length = 241 Score = 39.1 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 36 TSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVD-YYVVGMTFMSLAGKHCCSDGY 94 T+ ++ D ++ + L + ++V YY +++ +A G Sbjct: 120 TADQENSRSIDPMDCSLVNRSLEEL----PADYRVVVLMYYFEDLSYKEIAEALEIPIGT 175 Query: 95 IGKRLQKAEGIIEGML 110 + RL +A+ + L Sbjct: 176 VMSRLSRAKMHLREKL 191 >UniRef50_D2R1D3 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Planctomycetaceae RepID=D2R1D3_9PLAN Length = 189 Score = 39.1 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 3/80 (3%) Query: 34 LITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDG 93 + TS P + A ++ +A L +LV + G + ++ G Sbjct: 106 VATSTAVDGPMLQSEQAALVHRAIATLADEFR---TVLVMREIDGFDYEQISQILDLPVG 162 Query: 94 YIGKRLQKAEGIIEGMLMAL 113 + RL +A + L L Sbjct: 163 TVRSRLHRARLQLRDQLKQL 182 >UniRef50_C6PRA4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PRA4_9CLOT Length = 190 Score = 39.1 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D+ ++ + +L ++ YY ++ ++ C G + RL A + Sbjct: 102 DEIKRLVNEAIDKLSVPLK---TTIILYYYNELSIKEISKILGCFQGTVKSRLHNARKFL 158 Query: 107 EGML 110 E L Sbjct: 159 EKEL 162 >UniRef50_UPI0001B58959 hypothetical protein SSPB78_10073 n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B58959 Length = 188 Score = 39.1 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 A L + L+DLLV Y +G+ +A +G + + A G +EG Sbjct: 97 AALAELPERLYDLLVLRYELGVGDAEIADYLGIEQAAVGAQARYARGRVEG 147 >UniRef50_C0VNT9 RNA polymerase sigma factor FecI n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNT9_9GAMM Length = 189 Score = 39.1 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 4/77 (5%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAM----IICGCMARLKKNNSDLHDLLVDYYVVGMTFMS 83 A GL + ++ + I L+ + + +Y+ G T Sbjct: 96 QAYLDGLSEMEYMLDAVISPEEQVQIIQAIHQLCKALEAVSEKAQQAFILHYLEGYTHKE 155 Query: 84 LAGKHCCSDGYIGKRLQ 100 A K S I K L Sbjct: 156 TAEKLGVSTKMIQKYLA 172 >UniRef50_C5RQ60 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Clostridium RepID=C5RQ60_CLOCL Length = 173 Score = 39.1 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 53 ICGCMARLKKNNSDL---HDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 I + L+ + ++V Y +T +A C G I L KA Sbjct: 108 IDEKLDILESIDKLEEKYKKVIVLKYFQDLTITEIAEVLNCPTGTIKTYLNKAL 161 >UniRef50_B9YFM7 RNA polymerase sigma factor n=1 Tax='Nostoc azollae' 0708 RepID=B9YFM7_ANAAZ Length = 289 Score = 39.1 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 32/80 (40%), Gaps = 3/80 (3%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGK 87 A+ L+ Q +D + + + +L+ + +L ++ +T +A Sbjct: 205 ASCLGELVPDPHYRSFQLAQEDQIRLQQALVQLENRTRE---VLECVFLQDLTQKQVAEH 261 Query: 88 HCCSDGYIGKRLQKAEGIIE 107 S + +R++K +++ Sbjct: 262 LGISVVTVSRRVKKGLDLLK 281 >UniRef50_B9XS45 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Verrucomicrobia RepID=B9XS45_9BACT Length = 216 Score = 39.1 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + + +L +++ ++ + V G++ +A C+ G + RL A ++ L Sbjct: 156 KLNAALLKLSEHHRL---VVTLHDVQGLSHEEIAKIMDCNIGTVRSRLFYARQQLQAYLS 212 >UniRef50_A6EHD6 Sigma-24 (FecI-like) protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHD6_9SPHI Length = 171 Score = 39.1 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 4/66 (6%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 I ++ + ++ Y G + +A + G + R+ +A ++ L Sbjct: 110 IKKAISNI----PTIYSTAFVRYFEGYKYYEIAEELNIPIGTVKTRIHEARRMLRLQLQT 165 Query: 113 LDIRLE 118 + L Sbjct: 166 YRVSLN 171 >UniRef50_A8F871 Transcriptional regulator, DeoR family n=1 Tax=Thermotoga lettingae TMO RepID=A8F871_THELT Length = 318 Score = 39.1 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 KKN+S+L + YY+ T +A S + + L +A Sbjct: 7 KKNDSELIRICKMYYIENCTQEQIARTFGVSRSQVSRLLNEAR 49 >UniRef50_C3BA74 Putative uncharacterized protein n=3 Tax=Bacillus RepID=C3BA74_BACMY Length = 192 Score = 39.1 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 26/55 (47%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 ++K + + +++ YY ++ +A + +G + L +A ++ +L + Sbjct: 127 IQKLDENYQTVIILYYYHDLSINKIAWQMNIPEGTVKTYLHRARKALKNLLGGSE 181 >UniRef50_B2PU08 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PU08_PROST Length = 176 Score = 39.1 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++ ++ +A+L +N + L GMT+ +A + S I LQ A ++ Sbjct: 109 EEQLQLLSEQLAKLPENMEQAYLLAQ---FEGMTYQQIATQLKVSPNSIKYYLQVARKVL 165 Query: 107 EGMLM 111 + L Sbjct: 166 QKELT 170 >UniRef50_Q066Z3 Possible type 3 alternative RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107 RepID=Q066Z3_9SYNE Length = 150 Score = 39.1 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 5/94 (5%) Query: 17 NNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYV 76 + TW F +K+ +C + A I + +L KN+ + L++ Sbjct: 56 SYRYKTTWVEFEDEFMTGRYYGLKNIERC--EQAAKINSALQKLHKNDQKIIRLVI---F 110 Query: 77 VGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G + S + +RL++A + L Sbjct: 111 EGNSLRLAGKNIGVSAMTVQRRLKRALATLRDRL 144 >UniRef50_B5H2R4 RNA polymerase sigma factor n=3 Tax=Streptomyces RepID=B5H2R4_STRCL Length = 195 Score = 39.1 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 50 AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 A+ + +ARL N LV Y ++ +A +G + RL KA + + Sbjct: 117 ALSVADGLARLTDN---QRQALVLRYYGDLSVRDIARLLDIPEGTVKSRLSKASAALRNV 173 Query: 110 L 110 L Sbjct: 174 L 174 >UniRef50_D2PN97 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PN97_9ACTO Length = 181 Score = 39.1 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 7/54 (12%), Positives = 15/54 (27%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + L LV + + +A CS G + + + + Sbjct: 103 DQLLRALATLPRRTRAALVLRFFEDLPDAEIAKVMGCSVGTVKSTVSRGLAKLR 156 >UniRef50_C0W634 DeoR family transcriptional regulator n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W634_9ACTO Length = 401 Score = 39.1 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 12/32 (37%) Query: 73 DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 YY G T +A S + + L +A Sbjct: 54 MYYAQGETMEVIARHLGVSRSTVSRLLARARA 85 >UniRef50_C7H5A7 Sigma-70, region 4 subfamily n=14 Tax=Bacteria RepID=C7H5A7_9FIRM Length = 166 Score = 39.1 bits (90), Expect = 0.047, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 21/54 (38%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 A L + +++ YY +T + ++ + G+R+Q + L Sbjct: 103 AALSALSQMEQEIIFLYYFQRLTHREIGRRYGRAGNTTGRRIQMILRRLRAELE 156 >UniRef50_UPI0001C37E01 ECF subfamily RNA polymerase sigma-24 factor n=3 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E01 Length = 186 Score = 39.1 bits (90), Expect = 0.047, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 M ++++ ++L+ Y ++A + + R +A ++ +L LDI Sbjct: 125 IMEKIEEMGPPDSEILIQKYFFDRNSTAIARVMKMNPVTVRSRCSRAVKRLKKILTELDI 184 Query: 116 RL 117 L Sbjct: 185 TL 186 >UniRef50_B0G942 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G942_9FIRM Length = 184 Score = 39.1 bits (90), Expect = 0.047, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 21/55 (38%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 A L + NS ++ + Y + +A K S + L +A+ I+ Sbjct: 118 DTIFADLYEKNSRWYEAVTVSYTLDKPQKEVADKMGISVDTLYSTLYRAKQWIKK 172 >UniRef50_A3ZXR2 RNA polymerase ECF-type sigma factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZXR2_9PLAN Length = 185 Score = 39.1 bits (90), Expect = 0.047, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 5/108 (4%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKN 63 ++ L R A H + KV S Q DA+ L Sbjct: 76 VETWLHRIAVNEALQHLRRNRRHKHSDLDWEPMDKVDSGRQAEQKDALE-----QALANI 130 Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + +L + + V ++ +A +G +G RL +A ++ L Sbjct: 131 DPELKSIFLLREVEDYSYHDIAESLHIPEGTVGSRLNRARRDLQQQLQ 178 >UniRef50_A4J196 Transposase and inactivated derivatives-like protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J196_DESRM Length = 529 Score = 39.1 bits (90), Expect = 0.048, Method: Composition-based stats. Identities = 5/31 (16%), Positives = 13/31 (41%) Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRL 99 ++L+ YY G + +A + + + Sbjct: 9 NILIMYYREGKSQREIARLLGVDRKTVRRYI 39 >UniRef50_C4DG86 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-E family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DG86_9ACTO Length = 178 Score = 39.1 bits (90), Expect = 0.048, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 4/88 (4%) Query: 31 FKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCC 90 L + DD M +A L + +V Y + +A C Sbjct: 81 VDELPDRLGPDGSEASDDRLM----VLAALTQLPKRQRTAVVLRYWEDLPIEQVAEIMKC 136 Query: 91 SDGYIGKRLQKAEGIIEGMLMALDIRLE 118 + G + + + + ++ + Sbjct: 137 TTGAVKSQSSRGLAALRAIIDGTRSSHD 164 >UniRef50_C7QDL0 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QDL0_CATAD Length = 188 Score = 39.1 bits (90), Expect = 0.048, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 MA L + + ++V + +T A C+ G + + KA + Sbjct: 117 SRFMAALARLSPGQRAVIVLRFYEDLTEAQTAAAMGCTVGTVKSQTAKALARLRR 171 >UniRef50_A0M260 RNA polymerase ECF-type sigma factor n=1 Tax=Gramella forsetii KT0803 RepID=A0M260_GRAFK Length = 186 Score = 39.1 bits (90), Expect = 0.048, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ LK + ++ + G+++ +A + S + +L++A+ IE L+ Sbjct: 118 LVQKAEEILKCLPEKMQEIFKLKVMHGLSYKEIAEEMEISINTVKTQLKRAKFKIESALL 177 Query: 112 A 112 Sbjct: 178 I 178 >UniRef50_Q2W687 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=2 Tax=Magnetospirillum RepID=Q2W687_MAGSA Length = 183 Score = 38.8 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 6/90 (6%) Query: 35 ITSKVKSRPQCCDDDAMII-----CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHC 89 QC D ++ A L L ++LV + + G +A Sbjct: 80 PEDFAGLADQCEDAVTALMKAEMGDCITAHLSALPDRLREVLVLHDMGGAGHAEVAAALG 139 Query: 90 CSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 ++G L +A + L R+++ Sbjct: 140 ITEGNARVLLHRARAALRERL-GKHCRIDL 168 >UniRef50_C7Q1Q6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q1Q6_CATAD Length = 181 Score = 38.8 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D + + L + + ++V Y ++ +A CS G + + + + Sbjct: 111 EDVTLRDSLLRALDELPHGMRTIVVLRYWEELSVQEVAELRRCSAGTVKSQAARGLARL- 169 Query: 108 GMLMALDIRLE 118 LM + R E Sbjct: 170 RELMTAEARSE 180 >UniRef50_B2UNI5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNI5_AKKM8 Length = 199 Score = 38.8 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + I + +L + + ++V + V G+ ++ S+G + RL A ++G+L Sbjct: 138 LKINEALKKLSTKHRE---VVVLHDVKGLNHTEISALLGISEGTLRSRLHYAHKELQGLL 194 Query: 111 M 111 Sbjct: 195 A 195 >UniRef50_UPI00019736E4 ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019736E4 Length = 180 Score = 38.8 bits (89), Expect = 0.051, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + RL D+L YYV + + + + RL++A + ML Sbjct: 123 EAIGRLDGIYQ---DVLRLYYVHELPSKEIGKILNINHLTVNTRLKRAREKLFKML 175 >UniRef50_A9AUQ5 Transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AUQ5_HERA2 Length = 189 Score = 38.8 bits (89), Expect = 0.052, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + L + D L+ Y +G ++A CS+ + + +A I++ Sbjct: 122 HLALELLAHVSLTQRDHLIMRYFLGWRVQTIAQHLGCSENAVSVSIHRALRILQ 175 >UniRef50_D2Q1G7 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1G7_9ACTO Length = 176 Score = 38.8 bits (89), Expect = 0.053, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 17/45 (37%) Query: 66 DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +V Y G+ +A C+ + ++ +A G + L Sbjct: 126 RQRAAVVLRYYEGLPDAEIAEVLGCTAATVRSQIHRALGSLRATL 170 >UniRef50_B0PHJ8 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHJ8_9FIRM Length = 190 Score = 38.8 bits (89), Expect = 0.053, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 55 GCMARLKKNNSDLHD-LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 C+ L + + +L+ Y G + +A ++ + KR+Q+A +E +L Sbjct: 127 DCLIELIGQMPESYRSVLLLKYDNGYSTAEIASMLNLTEENVKKRIQRARKKLEQILDTE 186 Query: 114 DI 115 + Sbjct: 187 GV 188 >UniRef50_B0NZQ8 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NZQ8_9CLOT Length = 181 Score = 38.8 bits (89), Expect = 0.053, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%) Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 L D ++ YV G+ +A ++ + R ++A ++ M+ A ++ Sbjct: 125 NLAALPRRHRDTILFRYVYGLKCKEIADLFRITERSVKNRCKEARELLRQMMEADEL 181 >UniRef50_UPI0001851483 RNA polymerase ECF-type sigma factor n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851483 Length = 189 Score = 38.8 bits (89), Expect = 0.053, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L N + ++ +Y G + ++A + G + R++ A I+ L Sbjct: 126 SALSILNQEQKQIVELFYFKGQSQSTIAKETGLPLGTVKGRIRLALQHIKKHLERE 181 >UniRef50_UPI000197B429 hypothetical protein BACCOPRO_02759 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197B429 Length = 193 Score = 38.8 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 M+ L+K + ++ ++ + MT+M ++ + + + KRL+ A I+ + I Sbjct: 129 LMSILEKEPPQIKQIIKMHFYMEMTYMQISAELHLNKSTMAKRLRTALKRIKAEMTQEGI 188 Query: 116 R 116 R Sbjct: 189 R 189 >UniRef50_C7Q0T3 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q0T3_CATAD Length = 202 Score = 38.8 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 MA L + + ++V Y + +A CS G + + KA + Sbjct: 128 SALMAALAELPARQRAVVVLRYWEDLPEKEVAAVLGCSTGTVKSQASKALARLR 181 >UniRef50_Q21PM0 Sigma-70 region 4 n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21PM0_SACD2 Length = 186 Score = 38.8 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 11/98 (11%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMIICGCMA-----------RLKKNNSDLHDLLVDYYV 76 + T + +P D+ + + G L + ++ +Y+ Sbjct: 87 IDWIRRKQTRRKYEQPMPDDESHVELGGTTTPDHAQNISLQQALHSLEPEAQQIIRLFYM 146 Query: 77 VGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 G + + +G + RL A ++ +L Sbjct: 147 EGFSVQEIGSIIDKPEGTVKSRLFAARNKLKQVLEGGH 184 >UniRef50_B2A0Y6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A0Y6_NATTJ Length = 168 Score = 38.8 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 54 CGCMARLKKNNSDLH-DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 ++ + + ++++ YY G++ +A + I L +A ++ Sbjct: 104 HEIYKKILSLTPNNYREIIILYYYGGLSIKEIAVTLNSNPSTIKTTLHRARKKLKR 159 >UniRef50_D1SFQ0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SFQ0_9ACTO Length = 185 Score = 38.8 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 20/55 (36%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 A L + +V +Y+ ++ +A + +G + L + + L Sbjct: 123 AALAELPPHQRRAVVLHYLADLSVAQIAAQEDVPEGTVKSWLYRGRTALAAKLTT 177 >UniRef50_A3UJ72 RNA polymerase sigma-70 factor n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UJ72_9RHOB Length = 183 Score = 38.8 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 20/55 (36%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 ++ + H L Y++ G+T +A G I RL A I L Sbjct: 125 TAMRDLPPEQHAALWLYHIQGLTVAEIAAALDVPTGTIKTRLMHARRKIAAQLQG 179 >UniRef50_B0N7Y8 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0N7Y8_9FIRM Length = 160 Score = 38.8 bits (89), Expect = 0.055, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 18/42 (42%) Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 ++L YY G + +A + I RL + +++ L Sbjct: 113 NVLYLYYYEGYSTNEIASILKENHNTIKSRLIRGRKLLKKKL 154 >UniRef50_D0L5V1 RNA polymerase sigma-70 factor, sigma-B/F/G subfamily n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L5V1_GORB4 Length = 276 Score = 38.8 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 37 SKVKSRPQCCDDDAMI--ICGCMA---RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCS 91 R DDDA + I + L + +++ + M+ +A + S Sbjct: 189 DGRSIRDTLGDDDARLAQIDEFVTLRPVLDQLPDREREIVTLRFFHAMSQSEIAARVGIS 248 Query: 92 DGYIGKRLQKAEGIIEGMLMALD 114 ++ + L + + L D Sbjct: 249 QMHVSRLLSRTLETLREQLTVDD 271 >UniRef50_A6G0C2 DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G0C2_9DELT Length = 197 Score = 38.8 bits (89), Expect = 0.057, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 51 MIICGCMARLKKNNSDLHDL-LVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 ++ + + + L +Y +T +A + RL++ G +E + Sbjct: 118 RLLHEALRAI----PLEFQVALELHYWQELTTSQIAAALDVPAATVKSRLRRGRGHLERV 173 Query: 110 LM 111 L Sbjct: 174 LT 175 >UniRef50_B5GZ85 RNA polymerase n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GZ85_STRCL Length = 206 Score = 38.8 bits (89), Expect = 0.058, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 18/58 (31%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + L+ ++L+ Y +G + A G + R A + L Sbjct: 142 HVVVDALRDLAPYQQEVLLHVYYLGRSVRQTALALGVPPGTVKSRTHYAIRALRAGLT 199 >UniRef50_C7QCU5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QCU5_CATAD Length = 185 Score = 38.8 bits (89), Expect = 0.059, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 A L+ + +++ Y + M+ A CS G + + KA + G L Sbjct: 122 AALRALPARQRAVVLLRYYLDMSEAETAVMLGCSQGTVKSQSSKALAALRGRLA 175 >UniRef50_A4FHE1 RNA polymerase sigma factor n=4 Tax=Actinomycetales RepID=A4FHE1_SACEN Length = 268 Score = 38.8 bits (89), Expect = 0.059, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L + +LV + GMT +A + S ++ + L + + L Sbjct: 205 LAELPERERRILVMRFFRGMTQTEIAEQVGVSQMHVSRLLTRTLSWLRERL 255 >UniRef50_A4FQI7 RNA polymerase ECF sigma factor n=3 Tax=Pseudonocardineae RepID=A4FQI7_SACEN Length = 180 Score = 38.8 bits (89), Expect = 0.060, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 23/78 (29%) Query: 35 ITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGY 94 + P A ++ L + +LV Y + +A CS+G Sbjct: 89 DPGDPLADPAVAGQRAQARDLVLSALAEVPPRQRAVLVLRYWEDLPTAEVAAALRCSEGT 148 Query: 95 IGKRLQKAEGIIEGMLMA 112 + + + + + Sbjct: 149 VKSQASRGLRNLRAAIAR 166 >UniRef50_A5N6W1 RpoE n=4 Tax=Clostridium RepID=A5N6W1_CLOK5 Length = 173 Score = 38.8 bits (89), Expect = 0.060, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 24/54 (44%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + ++ ++++ YY ++ ++ +G + RL +A GI++ Sbjct: 109 EDILKKVMDLPKKYKEVILLYYYQELSTSEISKILKIPEGTVRSRLYRARGILK 162 >UniRef50_C0EB29 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB29_9CLOT Length = 113 Score = 38.8 bits (89), Expect = 0.061, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 34 LITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDG 93 S +R Q + + G + + ++ YY + +A + Sbjct: 34 SPKSGDSNRSQIN-QASRAVAGIID--SELTPRQRQIIQLYYNQRLNTTQIAELLKINKS 90 Query: 94 YIGKRLQKA 102 + + L +A Sbjct: 91 TVSRTLARA 99 >UniRef50_B0MUR5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MUR5_9BACT Length = 194 Score = 38.8 bits (89), Expect = 0.061, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%) Query: 65 SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 + ++++ Y GM+F +A + S R++ A + M+ ++ L Sbjct: 141 EEQREVVMMRYYSGMSFKEIAEQTGVSINTALGRMRYALINLRRMIREKELIL 193 >UniRef50_A8LDY6 RNA polymerase, sigma-24 subunit, ECF subfamily n=8 Tax=Actinomycetales RepID=A8LDY6_FRASN Length = 299 Score = 38.8 bits (89), Expect = 0.062, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 A L + +V Y ++ A S G + + KA +E +L Sbjct: 174 AALMTLPARKRACVVLRYAFDLSEADTARTLGISVGTVKSQTSKAVAELERVL 226 >UniRef50_B9L2W8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L2W8_THERP Length = 196 Score = 38.8 bits (89), Expect = 0.062, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 6/70 (8%) Query: 33 GLITSKVKSRPQCCDDDAMII------CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAG 86 L++ P DD A I + L + +++ Y G+T +A Sbjct: 95 QLVSLDAVVLPSIADDTAREIIERVQRADLLKALDALPKEQREVVELAYFEGLTHHEIAT 154 Query: 87 KHCCSDGYIG 96 + G + Sbjct: 155 RLRIPLGTVK 164 >UniRef50_A9WDI9 RNA polymerase sigma factor, sigma-70 family n=6 Tax=Chloroflexi (class) RepID=A9WDI9_CHLAA Length = 193 Score = 38.8 bits (89), Expect = 0.062, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 55 GCMARLKKNNSDLHD-LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + R + + + V Y +++ + ++ + RL +A +++ L A Sbjct: 123 EVVQRALQRLPVTYRGVTVLRYWYDLSYEEIGQVLGLTEATVKTRLHRARKMLQEALAAE 182 Query: 114 DIRLEMD 120 + ++ Sbjct: 183 EEVWNIE 189 >UniRef50_B9L3X4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L3X4_THERP Length = 247 Score = 38.8 bits (89), Expect = 0.063, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 9/106 (8%) Query: 9 ERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLH 68 W W + + + + + + D +++ +A+L+ + + Sbjct: 139 RCWFDWLRA--QQLEYRAFGRVLREACPRAAEDWSA----DRLLVEQALAKLRDRDRE-- 190 Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 +L + + F +A S +R +A + L D Sbjct: 191 -ILYLRWEAELGFDEIADLLGISPTAAQRRAHRALVRLRQALAQRD 235 >UniRef50_Q3SQV6 IstB-like ATP-binding protein n=3 Tax=cellular organisms RepID=Q3SQV6_NITWN Length = 356 Score = 38.8 bits (89), Expect = 0.063, Method: Composition-based stats. Identities = 7/36 (19%), Positives = 16/36 (44%) Query: 68 HDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + ++++ G T ++A S + K L+ E Sbjct: 8 ARIRREHFIKGKTIRAIARDLKVSRNTVRKVLRSGE 43 >UniRef50_Q2NDN6 RNA polymerase sigma factor n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDN6_ERYLH Length = 183 Score = 38.8 bits (89), Expect = 0.063, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 4/93 (4%) Query: 19 HEDVTWSSIAAGFKGLITSKVKSRPQCCD-DDAMIICGCMARLKKNNSDLHDLLVDYYVV 77 + V S + CD +DA + C+ L+K++ + + Sbjct: 92 RDGVVRSEADDTLPDVADDAKPQDEWLCDLEDAEALQRCLEGLEKDHRRS---IRLAFFE 148 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G++ LA + G + +++ ++G L Sbjct: 149 GLSHSELARRIDAPLGTVKSWIRRGLAGLKGCL 181 >UniRef50_C7WYU9 RNA polymerase n=2 Tax=Enterococcus faecalis RepID=C7WYU9_ENTFA Length = 126 Score = 38.8 bits (89), Expect = 0.063, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 18/45 (40%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 A L + ++ ++ G + +A C + + LQ+A Sbjct: 71 AALSRLTDRQRRVIELHFWQGYQYKEIAVILGCDPSAVTRLLQRA 115 >UniRef50_C4KZA8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KZA8_EXISA Length = 186 Score = 38.4 bits (88), Expect = 0.064, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 23/64 (35%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 + ++ ++ Y G++ +A G + R++ A + L I Sbjct: 123 TAMATLPAEQQQVVRLMYFQGLSQQKIADACGIPLGTVKGRIRLALRQLRKQLSHEFIGK 182 Query: 118 EMDI 121 E++ Sbjct: 183 EVEQ 186 >UniRef50_B3R413 RNA polymerase sigma-70 factor n=1 Tax=Cupriavidus taiwanensis RepID=B3R413_CUPTR Length = 237 Score = 38.4 bits (88), Expect = 0.064, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 3/63 (4%) Query: 50 AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 A + + +L + ++V + M+ +A + RL+ A + Sbjct: 171 AQHVHRALLQLPVAQRE---VVVLRFFSNMSVEEIAAMLGEKFETVKSRLRYAFARLRAD 227 Query: 110 LMA 112 L Sbjct: 228 LAG 230 >UniRef50_B7UVZ8 Putative RNA polymerase sigma factor n=5 Tax=Pseudomonas aeruginosa RepID=B7UVZ8_PSEA8 Length = 197 Score = 38.4 bits (88), Expect = 0.064, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 23/71 (32%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + + L + L ++ + + +A + + + KR+Q + Sbjct: 120 EQLERLDQVDKALASLSRQQQQLFELRFIEELPYADIASQLGIAPPLVRKRVQLLRSRLS 179 Query: 108 GMLMALDIRLE 118 A D+ + Sbjct: 180 ADFFAGDVSQD 190 >UniRef50_C6J9Q6 RNA polymerase n=6 Tax=Bacteria RepID=C6J9Q6_9FIRM Length = 210 Score = 38.4 bits (88), Expect = 0.064, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 I+ CM L + + L Y GM++ A S I + + + + G+L Sbjct: 145 ILHLCMDELNSDYREA---LYLTYFEGMSYQQAAEVMGKSVKQITNMVYRGKERLRGLLQ 201 Query: 112 ALDIR 116 I Sbjct: 202 REGIT 206 >UniRef50_C8WJQ5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WJQ5_EGGLE Length = 197 Score = 38.4 bits (88), Expect = 0.065, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 D+A+ + +A L ++ +LV +YV ++ S+G + RL +A Sbjct: 126 DEALDVRDAIASLSADDRL---VLVLFYVNDFPVRQISQIMNVSEGAVRTRLSRAR 178 >UniRef50_C6XXN2 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XXN2_PEDHD Length = 200 Score = 38.4 bits (88), Expect = 0.065, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 17/53 (32%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + L + + ++L Y + + +A S K +A + Sbjct: 127 QLLDALNQISPRQKEILYLRYFEELDYNQIAEMMNISVKGAYKLSARALEALR 179 >UniRef50_B1HXE6 RNA polymerase sigma factor Y n=3 Tax=Bacillaceae RepID=B1HXE6_LYSSC Length = 182 Score = 38.4 bits (88), Expect = 0.065, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 47 DDDAMII--CGCMAR-LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 +DD ++ + ++ + +V YY + + +A S + RL +A+ Sbjct: 107 EDDVLLFEEDRTLHNAIQSLDEKYRYPIVLYYFHELKYEEIAEVLNISLSTVKVRLLRAK 166 Query: 104 GIIEGMLMAL 113 ++ LM Sbjct: 167 EKLKAALMQE 176 >UniRef50_Q04V56 RNA polymerase sigma subunit n=5 Tax=Leptospira RepID=Q04V56_LEPBJ Length = 180 Score = 38.4 bits (88), Expect = 0.066, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 6/93 (6%) Query: 32 KGLITSKVKSRPQCC------DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLA 85 K + + K ++D + A L+ ++++ ++ T A Sbjct: 86 KREVENSHKVLEFISKKEIEYEEDKHQLDLLNASLENLPHLEKNIIILRFLRNYTIKETA 145 Query: 86 GKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 K S + ++ + + L + E Sbjct: 146 EKLGISARTVNRKTYVSLIFLRKKLQNSNFDFE 178 >UniRef50_D1C190 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C190_SPHTD Length = 264 Score = 38.4 bits (88), Expect = 0.066, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 24/60 (40%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ A L++ ++ YY +T ++ ++ + + L +A + +L Sbjct: 194 LVHRLAAALERLPERDRLIVTLYYYEELTLREISEVLGITESRVSQLLSRARLQLRALLH 253 >UniRef50_Q2YZY9 RNA polymerase sigma-E factor n=1 Tax=uncultured candidate division OP8 bacterium RepID=Q2YZY9_9BACT Length = 239 Score = 38.4 bits (88), Expect = 0.066, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 18/48 (37%) Query: 65 SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 + Y + +AG+ CS+ I +L K + + M A Sbjct: 190 PRQRSIFSLRYREHLKIRQIAGRLDCSESNIRAQLFKTKARLRRMFAA 237 >UniRef50_D0LXD4 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LXD4_HALO1 Length = 226 Score = 38.4 bits (88), Expect = 0.066, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L K D +++ V G+ + +A + G + RL +A +EG L Sbjct: 148 DEVTRALGKLRPDYREVVELADVRGLGYREIADELSLPLGTVMSRLFRARRSLEGEL 204 >UniRef50_Q0KCN4 DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) n=4 Tax=Proteobacteria RepID=Q0KCN4_RALEH Length = 207 Score = 38.4 bits (88), Expect = 0.068, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 18/60 (30%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 L + +++V + M+ +A + RL+ A + L Sbjct: 139 HHVQRALLQLPVAQREVVVLRFFSDMSVEEIAQMLGEKFETVKSRLRYAFARLRANLAGS 198 >UniRef50_B5GMK1 RNA polymerase ECF-subfamily sigma factor n=4 Tax=Streptomyces RepID=B5GMK1_STRCL Length = 206 Score = 38.4 bits (88), Expect = 0.068, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 20/60 (33%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 DDA + ++ ++L G+ + A G + RL +A + Sbjct: 110 DDARRLDAVHRAVRGLRRQEREVLALCVWSGLDYQQTADALGVPVGTVRSRLSRARVRLR 169 >UniRef50_D1CE12 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CE12_THET1 Length = 208 Score = 38.4 bits (88), Expect = 0.069, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 L S+ +++ Y GMT +A S G + R++ + +L + Sbjct: 149 GALALIPSEQKEVIELAYYGGMTISQIAKLTGASTGTVKTRMRLGMMKLRQILTSS 204 >UniRef50_C7HA68 RNA polymerase ECF-type sigma factor n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA68_9FIRM Length = 180 Score = 38.4 bits (88), Expect = 0.069, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 7/62 (11%) Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + +L++ + + +A + RL+ A L L ++LE + Sbjct: 125 AQLEPEQRELVLLRFAQQLKLREIAEITGLPLRTVQSRLRAA-------LKTLKMQLEKE 177 Query: 121 IV 122 Sbjct: 178 DW 179 >UniRef50_Q7UJX5 Probable RNA-polymerase sigma-E factor n=1 Tax=Rhodopirellula baltica RepID=Q7UJX5_RHOBA Length = 239 Score = 38.4 bits (88), Expect = 0.070, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + + + L ++ + ++V +V GM+F +A S + K + + Sbjct: 182 LQLAEALESLPEHYRE---VIVLRHVEGMSFADVAKSMDKSVDSVEKLWVRGLAKLR 235 >UniRef50_D2S8S5 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S8S5_9ACTO Length = 166 Score = 38.4 bits (88), Expect = 0.070, Method: Composition-based stats. Identities = 10/97 (10%), Positives = 26/97 (26%), Gaps = 6/97 (6%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 + S + + + + D+ A L++ + +V Sbjct: 66 VNAHTSWRRRLSTTEQVVESVPDRAAAPAEDGDEQLR------AALRELPVRMRTAVVLR 119 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 Y ++ A CS + + + + L Sbjct: 120 YFEDLSEQQTAAAMGCSPSTVNTQTARGLARLRAALA 156 >UniRef50_D2NU89 Transcriptional regulator n=2 Tax=Rothia mucilaginosa RepID=D2NU89_9MICC Length = 350 Score = 38.4 bits (88), Expect = 0.070, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 21/45 (46%) Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 ++ + + ++ YY+ MT ++A + S + + L+ A Sbjct: 35 QMNERANHTYEAAQLYYIHNMTMDAIAARLGVSRATVSRLLKSAR 79 >UniRef50_A7AAK6 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AAK6_9PORP Length = 199 Score = 38.4 bits (88), Expect = 0.070, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 22/55 (40%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 L+ + ++ + Y+ G+T +A + + L A ++G + D Sbjct: 130 LEHLPAQRREVFILTYIKGLTAKEVAEQTQMPQRTVESHLYLALRFLKGHMSRND 184 >UniRef50_C1F885 RNA polymerase sigma-70 factor, ECF family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F885_ACIC5 Length = 236 Score = 38.4 bits (88), Expect = 0.071, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 22/55 (40%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 L K + +L + ++ + + + +A +G + R+ + + +L Sbjct: 178 LVKISPELREAVILRDLQDLDYKEIAQILRVPEGTVKSRISRGRAELARVLERSK 232 >UniRef50_Q1D5D4 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Cystobacterineae RepID=Q1D5D4_MYXXD Length = 221 Score = 38.4 bits (88), Expect = 0.072, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 31 FKGLITSKVKSRPQ--CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKH 88 K ++ S S+ + ++ + MA L + + +L YYV T +A Sbjct: 136 MKEVLPSGEASQEEGAIAREERQSLEEAMATLSVEDRE---VLALYYVQKRTTKEIAQIM 192 Query: 89 CCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 C+ G I RL +A + + A + Sbjct: 193 GCAPGTIMARLFRAREKLRKKMTAEEAPR 221 >UniRef50_B2HV64 DNA-directed RNA polymerase specialized sigma subunit n=5 Tax=Acinetobacter RepID=B2HV64_ACIBC Length = 178 Score = 38.4 bits (88), Expect = 0.072, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLH----DLLVDYYVVGMTFMS 83 A GL + +D M I + +L K + + +Y+ G T Sbjct: 85 QAYLDGLSQMEYMLDAVASPEDQMQIIQAINQLCKALEGVCEKAQQAFILHYLEGYTHKE 144 Query: 84 LAGKHCCSDGYIGKRLQ 100 +A + S I K L Sbjct: 145 IAERLNVSTKMIQKYLA 161 >UniRef50_A9DUP1 Sigma-24 (FecI-like) protein n=1 Tax=Kordia algicida OT-1 RepID=A9DUP1_9FLAO Length = 179 Score = 38.4 bits (88), Expect = 0.072, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 16/44 (36%) Query: 67 LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 ++ +YV + +A S G RL A ++ L Sbjct: 134 QRQIVHLFYVYEHSLKDIAQILNISVGTAKSRLYHAREQLKKQL 177 >UniRef50_A3WLE9 RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WLE9_9GAMM Length = 183 Score = 38.4 bits (88), Expect = 0.075, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 2/72 (2%) Query: 43 PQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 P+ D + ++ ++ + +T ++A + S+ I RL Sbjct: 113 PELSDQQQEA--ALVKAIRALPLAQRMVVELKFFQHLTTRAIATQLQESENTIKSRLYSG 170 Query: 103 EGIIEGMLMALD 114 ++ L ++ Sbjct: 171 VEKLKRELEVIN 182 >UniRef50_A8FB47 DNA-directed RNA polymerase sigma subunit n=2 Tax=Bacillus pumilus RepID=A8FB47_BACP2 Length = 188 Score = 38.4 bits (88), Expect = 0.075, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++ II ++ L K + ++ D Y GMT S+A K G + R++ + + Sbjct: 120 EEKQIIREAVSTLSK---EQQTIIEDVYFKGMTQKSIAEKLGIPIGTVKGRVRLSLKHLR 176 Query: 108 GMLMA 112 L Sbjct: 177 TRLSR 181 >UniRef50_UPI00016C380C RNA polymerase sigma-H factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C380C Length = 631 Score = 38.4 bits (88), Expect = 0.076, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 3/85 (3%) Query: 31 FKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCC 90 F T + I+ +A L + N L+ + GM+ A C Sbjct: 114 FPTPPTEGDALAEVSSRELLAILDEELAALPEENR---GPLILCCMEGMSGDEAARHLGC 170 Query: 91 SDGYIGKRLQKAEGIIEGMLMALDI 115 S+ + +RL+ A +++ L I Sbjct: 171 SESTLKRRLRHARELLQERLSRRGI 195 >UniRef50_Q0C430 RNA polymerase sigma-70 factor, ECF family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C430_HYPNA Length = 222 Score = 38.4 bits (88), Expect = 0.076, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 2/80 (2%) Query: 35 ITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGY 94 + Q D + + I + L + G+++ +A + S Sbjct: 125 CPASPNPEKQLMDAERLAIAEAVVSGMSARRQAA--LRLHRYEGLSYEEIARRLSISSTA 182 Query: 95 IGKRLQKAEGIIEGMLMALD 114 + K + +A I L + Sbjct: 183 VKKHVARAVAEIAARLAEAE 202 >UniRef50_C7Q3Q5 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Actinomycetales RepID=C7Q3Q5_CATAD Length = 164 Score = 38.4 bits (88), Expect = 0.076, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 21/58 (36%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 M LK+ + ++ + M+ + A + +A ++G+L + Sbjct: 102 LMEALKQLSPRQRAVVALRFWDDMSVEATAEALGMKANTVKSDTARALAKLKGLLDSS 159 >UniRef50_C4RG63 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RG63_9ACTO Length = 215 Score = 38.4 bits (88), Expect = 0.076, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 20/64 (31%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D D + L++ +V Y ++ A S G + + + + Sbjct: 121 DADVSAVLDVREALRRLPHRRRACVVLRYAFDLSERETARALGISVGTVKSQTSRGVAQL 180 Query: 107 EGML 110 +L Sbjct: 181 TTLL 184 >UniRef50_Q1IUA0 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUA0_ACIBL Length = 175 Score = 38.4 bits (88), Expect = 0.077, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 I+ A L + + + Y G+T +A K G I R++ A + L Sbjct: 110 IVEKVRAALAEMFPEQRRCMEMAYFEGLTHSEIAAKTGEPLGTIKTRIRSALIQLRKKLG 169 Query: 112 AL 113 Sbjct: 170 GA 171 >UniRef50_C1A5Q9 RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5Q9_GEMAT Length = 187 Score = 38.4 bits (88), Expect = 0.077, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 11/115 (9%) Query: 9 ERWGAW-------AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 + +GAW AA + A ++S + P D+ + + L Sbjct: 76 QAFGAWLHRIVANAALDIARRRKVRDADELPETLSSPHRD-PAESDELRARLTRALDTLG 134 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 ++V + V G + +G L A + L L Sbjct: 135 ---ERQRAVIVLHDVEGYKHAEIGTLLGIPEGTARSDLHHARAHLRRQLSNLRSE 186 >UniRef50_Q7MXL2 RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Porphyromonas gingivalis RepID=Q7MXL2_PORGI Length = 193 Score = 38.4 bits (88), Expect = 0.078, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 20/65 (30%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 + I L +++ Y M+F +A S R++ A + Sbjct: 128 ELATIEELEQYLSVLPEVQQEVVRMRYWEDMSFREIADATGVSINTALGRMRYALINLRK 187 Query: 109 MLMAL 113 M+ Sbjct: 188 MMGMS 192 >UniRef50_B1YM24 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YM24_EXIS2 Length = 181 Score = 38.4 bits (88), Expect = 0.078, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 3/96 (3%) Query: 19 HEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVG 78 + +I + + R + A + + LK D +L+ Y G Sbjct: 88 RREKRQPTIEVEERDGGYDEPVERTVMQRETATEVRDAVNELK---PDQQELIELVYFKG 144 Query: 79 MTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 +T ++ + G + R++ A + +L + Sbjct: 145 LTQQQISDQLNLPLGTVKTRIRSAIQALRKLLDGRE 180 >UniRef50_A7V7Z1 Putative uncharacterized protein n=1 Tax=Bacteroides uniformis ATCC 8492 RepID=A7V7Z1_BACUN Length = 198 Score = 38.4 bits (88), Expect = 0.078, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 19/51 (37%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +++ + L +Y G + +A + S + L +A + L Sbjct: 132 IRQLPPRRAEALNLFYFEGKSQKDIANQMHVSLRTVQTHLAQAIAELRKSL 182 >UniRef50_D2QYF2 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Planctomycetaceae RepID=D2QYF2_9PLAN Length = 204 Score = 38.4 bits (88), Expect = 0.078, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +DA+ + +A L + + ++V + G+ F +A + S+ + K +A + Sbjct: 141 EDALHLSEALANLPADYRE---VIVLRNLEGLPFKMVAERMERSEDSVEKLWMRALVKLR 197 Query: 108 GMLMALD 114 L A Sbjct: 198 AHLGAAR 204 >UniRef50_C0Z5Y5 RNA polymerase ECF-type sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5Y5_BREBN Length = 193 Score = 38.4 bits (88), Expect = 0.080, Method: Composition-based stats. Identities = 6/59 (10%), Positives = 19/59 (32%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + L+K D +++ Y+ + A + + + ++ +L Sbjct: 121 EMHSIQRALQKLKPDQRIIVILRYIKEYSVKETAEILGIPETKVRVDCHRGLKALQKIL 179 >UniRef50_C4RHF9 RNA polymerase ECF-subfamily sigma factor n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RHF9_9ACTO Length = 239 Score = 38.4 bits (88), Expect = 0.080, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +A L + + +V YV G++ A CS+G + + + + +L Sbjct: 176 RVLALLATLPNSMRAAVVLRYVEGLSVTETADAMRCSEGNVKSQSARGLERLRALL 231 >UniRef50_A4AH57 Putative RNA polymerase sigma factor n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AH57_9ACTN Length = 179 Score = 38.4 bits (88), Expect = 0.080, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 19/57 (33%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 ++L K +V Y + +A S G + + L A + L + Sbjct: 114 SQLMKLRPRERACVVLRYYEDLKVDDIAQTLQISSGAVKRYLSDALARMAVGLDRAE 170 >UniRef50_A6NX52 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NX52_9BACE Length = 167 Score = 38.4 bits (88), Expect = 0.080, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 55 GCMARLKKNNSDLHD-LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + RL + + + +YV G T +A C G + RL +A ++ +L Sbjct: 106 SAVGRL----PEKYRTAVYLHYVEGYTAEEIAALLGCPRGTVLSRLMRARKLLRDLL 158 >UniRef50_C7NHN4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NHN4_KYTSD Length = 261 Score = 38.4 bits (88), Expect = 0.081, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 52 IICGCMA---RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + ++ ++ + +L+ Y+ T S+A S + +RL++A Sbjct: 193 AVDEWVSLHPHIQALDPRDRCVLLRRYLEDETQASIARALGISQAQVSRRLKRAL 247 >UniRef50_A0AEU0 Complete genome n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AEU0_LISW6 Length = 162 Score = 38.4 bits (88), Expect = 0.081, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 + +K N + LL+ Y +GM++ +A + + L +A Sbjct: 102 EIINTMKNLNENHQKLLMMKYDIGMSYQEIAEYLDTTPSNVKTYLSRARS 151 >UniRef50_A6GDL7 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL7_9DELT Length = 177 Score = 38.4 bits (88), Expect = 0.081, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + +A L+ +V ++ G +AG+ +D + RL + + L Sbjct: 112 ALDAAVAELRSP----FRAVVTLHLAGHDNREIAGRLGLNDNTVRSRLSRGLASLRRAL- 166 Query: 112 ALDIRLEMDIV 122 + R +D + Sbjct: 167 GSEQRRRVDPL 177 >UniRef50_A9ESI6 ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESI6_SORC5 Length = 266 Score = 38.4 bits (88), Expect = 0.082, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 7/86 (8%) Query: 26 SIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLA 85 + A G V R + A I + L +++ V GM++ +A Sbjct: 169 PLVARIDGADPLNVVRRREI----AGRIQAALDAL---PPYHRGVILMREVEGMSYEEMA 221 Query: 86 GKHCCSDGYIGKRLQKAEGIIEGMLM 111 S G I RL A ++ L Sbjct: 222 QAMGVSKGTIMSRLFHARQKLQRALA 247 >UniRef50_D2PVB3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PVB3_9ACTO Length = 194 Score = 38.4 bits (88), Expect = 0.082, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 23/69 (33%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 DD + L + + +++ + A +G + RL +A + Sbjct: 123 DDERAMSDIRRVLDRIPAKQREVVELVVWADCSMAEAARALGVPEGTVKSRLARARSSLA 182 Query: 108 GMLMALDIR 116 G+L + Sbjct: 183 GLLDVDTLE 191 >UniRef50_A4F9Q1 RNA polymerase ECF sigma factor n=2 Tax=Actinomycetales RepID=A4F9Q1_SACEN Length = 168 Score = 38.4 bits (88), Expect = 0.082, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 16/51 (31%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 L +V Y + + A CS G + + + + +L Sbjct: 107 LAALPPGQRAAVVLRYWEDQSVEATAQLLGCSTGTVKSQTARGLAALRKLL 157 >UniRef50_Q6XR77 RNA polymerase sigma factor n=2 Tax=uncultured bacterium RepID=Q6XR77_9BACT Length = 208 Score = 38.4 bits (88), Expect = 0.082, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 17/49 (34%) Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + +L D+YV G + L K + RL + + + Sbjct: 153 LEPEQQAILRDHYVEGFSVKQLCEKFTVKHSTMTMRLYRCREWLRDCIT 201 >UniRef50_B3DQS2 DNA-directed RNA polymerase specialized sigma subunit n=19 Tax=Bifidobacteriaceae RepID=B3DQS2_BIFLD Length = 262 Score = 38.0 bits (87), Expect = 0.083, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 DA MA L K + + + +D + G ++ +A + G + RL +A ++ Sbjct: 127 DAFAPEEIMAALAKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGTVMSRLNRARTQLKR 186 Query: 109 MLM 111 L Sbjct: 187 ELA 189 >UniRef50_Q3DIT8 RNA polymerase sigma factor, ECF subfamily n=8 Tax=Streptococcus agalactiae RepID=Q3DIT8_STRAG Length = 163 Score = 38.0 bits (87), Expect = 0.085, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + + LKK+ L DL YY + ++ S I RL +A ++ L Sbjct: 101 ELHEAILHLKKDYQTLIDL---YYFNDFSIKEISEITGQSQSTIKIRLMRARREVKKYLE 157 >UniRef50_A6TX43 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TX43_ALKMQ Length = 188 Score = 38.0 bits (87), Expect = 0.085, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 21/44 (47%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 L++ + D +++ Y +T+ + G + RL++A+ Sbjct: 128 LEQLDPDAKEIITLRYYHHLTYEDVGKALSLKQGTVKSRLRRAK 171 >UniRef50_C9YZT0 Putative membrane-associated DNA-binding protein n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YZT0_STRSW Length = 220 Score = 38.0 bits (87), Expect = 0.085, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 4/100 (4%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 H V + A + +S DD ++I L+ + + LV Sbjct: 125 MRIRHLQVARRHVEAPAAEEPVASAESTALLHDDQRVLID----ALQHLPARQREALVLR 180 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + +G+ +A S G + + + + A Sbjct: 181 HWLGLKESEIAAAMGISCGSVKTHTARGLAALTQAMEARR 220 >UniRef50_A9AVG8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AVG8_HERA2 Length = 181 Score = 38.0 bits (87), Expect = 0.086, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 20/44 (45%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 +I + L++ + + H L+ Y G+T +A ++ + Sbjct: 116 VIAALLPHLRQLSVEEHKLIALKYGAGLTNRDIATVLDLTESTV 159 >UniRef50_B1ZXG6 RNA polymerase, sigma-24 subunit, ECF subfamily n=4 Tax=Verrucomicrobia RepID=B1ZXG6_OPITP Length = 247 Score = 38.0 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ CM +L ++ ++L V+ ++ +A + G + R+ +A + +L Sbjct: 160 LVDLCMEKL---DARHREILTLRNVLNRSYEEIATTLGINVGTVKSRIARARENLRTLLA 216 >UniRef50_A8ETG9 Sigma factor, ECF family n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ETG9_ARCB4 Length = 158 Score = 38.0 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 15/43 (34%) Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 +K V YY G T +A S + K + +A Sbjct: 104 IKSLPPQQKKAFVFYYYKGYTRKEIAQILDISTNAVEKNISRA 146 >UniRef50_A6G3U7 RNA polymerase sigma-70 factor n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3U7_9DELT Length = 220 Score = 38.0 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L++ + L+ +Y G+ LA + + RL +A + + L Sbjct: 115 HQLLLALRELPVEQQMLIELHYWEGIALEELATIFEVAPATVRSRLFRARKDLRRRMTRL 174 >UniRef50_Q637N4 RNA polymerase ECF-type sigma factor n=75 Tax=Bacillus RepID=Q637N4_BACCZ Length = 177 Score = 38.0 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 1/91 (1%) Query: 23 TWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFM 82 ++I +K +I ++ D I C ++ + +L + V YY M Sbjct: 88 ECNNIIRTYKKVIVTEENDYNMSACDQYEDIDLC-NAIQSLHEELRAVTVLYYYEDMNQE 146 Query: 83 SLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 S+A G + RL +A ++ L Sbjct: 147 SIAKLLEVPKGTVKSRLARAREQLQKRLKME 177 >UniRef50_Q2JA53 Sigma-24 n=3 Tax=Actinomycetales RepID=Q2JA53_FRASC Length = 198 Score = 38.0 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 20/56 (35%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + L++ + + LV Y + + +A S G + + + + + Sbjct: 140 VVVALQRLSPRQREALVLRYWLDLKESEIAAVMGISCGAVKSHVARGMTALSRAME 195 >UniRef50_A3TIU4 Putative sigma factor n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TIU4_9MICO Length = 200 Score = 38.0 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 + +A L ++ + ++ Y G+T +A S + KRL++A + L++ Sbjct: 128 VHDAVAGLDADDRE---IVTLTYWDGLTSAQVAAATGLSASAVRKRLERARQRLAQHLVS 184 Query: 113 LD 114 D Sbjct: 185 RD 186 >UniRef50_A6NPM0 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NPM0_9BACE Length = 167 Score = 38.0 bits (87), Expect = 0.089, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 +L+ YY ++ +A K S+ RL +A G +L Sbjct: 105 LTPRERQILLLYYEEELSHEEIARKLGISELNSRTRLFRARGRCRDLLE 153 >UniRef50_Q5WAM8 DNA-directed RNA polymerase ECF-type sigma factor n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WAM8_BACSK Length = 179 Score = 38.0 bits (87), Expect = 0.090, Method: Composition-based stats. Identities = 6/57 (10%), Positives = 16/57 (28%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 A L + ++ +Y + +A I L + ++ + Sbjct: 116 AALLDLDQKYQSAIILHYYHDLPIKEVAEIMKKPQSTIKSYLLRGRKRMKAYFERSE 172 >UniRef50_Q73CE7 RNA polymerase sigma-70 factor, ECF subfamily, putative n=5 Tax=Bacillus RepID=Q73CE7_BACC1 Length = 180 Score = 38.0 bits (87), Expect = 0.090, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + + ++ L ++V YYV +A +G I RL +A ++ Sbjct: 106 EQKLEFDNLLSYLSVEYRL---VIVLYYVNKFKTKEIAEILNEKEGTIKSRLHRARQQLK 162 >UniRef50_C5CGY4 Transcriptional regulator, DeoR family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGY4_KOSOT Length = 319 Score = 38.0 bits (87), Expect = 0.090, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 17/41 (41%) Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 N + + YY+ G+T +A + S + + L A Sbjct: 3 LNELAYRVSRLYYLDGLTQQQIANRLGISRPKVSRLLTYAR 43 >UniRef50_UPI0001B50E6C ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B50E6C Length = 198 Score = 38.0 bits (87), Expect = 0.091, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 32/93 (34%), Gaps = 10/93 (10%) Query: 30 GFKGLITSKVKSRPQCCD-------DDAMIICG---CMARLKKNNSDLHDLLVDYYVVGM 79 + L+ ++ + P+ C+ A++ + L++ + L+ + + + Sbjct: 103 RLRRLVIARRYAEPRLCEPVVRSAEQQALLNNDQRAVVKALRRLPRRQFEALILKHWMNL 162 Query: 80 TFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 +A S G + + + ML Sbjct: 163 KESEIAETMGISVGAVKSHTSRGITRLSQMLET 195 >UniRef50_A6GCB5 RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GCB5_9DELT Length = 461 Score = 38.0 bits (87), Expect = 0.092, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 ++L Y + +A + G + + +EG ++ M ALD R Sbjct: 120 EVLELRYFEERSAAEIARELDLPPGTVR--WRCSEG-LKRMRQALDAR 164 >UniRef50_UPI00016C5798 peptidase C14, caspase catalytic subunit p20 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5798 Length = 775 Score = 38.0 bits (87), Expect = 0.093, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 ++ + RL + V Y+ G++ A + C G I RL A Sbjct: 137 MLDAEIDRLSEPYRRAF---VLCYLEGLSNADAARELGCPVGTIESRLTAA 184 >UniRef50_Q1IQM4 Sigma-24, ECF subfamily n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQM4_ACIBL Length = 182 Score = 38.0 bits (87), Expect = 0.093, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 DDA I + +L+ ++L +++ G T AG C++G + RL A+ + Sbjct: 117 DDARAIHDALDKLE---PSHREVLTLFFLEGFTVSETAGIVGCAEGTVKSRLHYAKKALR 173 Query: 108 GMLMALD 114 ++ + Sbjct: 174 KIMDGEN 180 >UniRef50_C0Z6H7 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6H7_BREBN Length = 189 Score = 38.0 bits (87), Expect = 0.093, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%) Query: 55 GCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + L++ N ++++ + TF +A + + R+ +A ++G L + Sbjct: 118 DLTSALQQINEIEREIIMLRFFGECTFAEIAQIMQMGESAVKNRMYRALEKVKGNLRGSE 177 Query: 115 IRLE 118 E Sbjct: 178 DSYE 181 >UniRef50_UPI000174489D RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174489D Length = 207 Score = 38.0 bits (87), Expect = 0.094, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 23/53 (43%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + + + + + Y G+T +A + G + R+++ +E ++ Sbjct: 151 SAVLELTPEQREAIQMAYFGGLTQSEIAERLNEPLGTVKARIRRGVQRLEQVI 203 >UniRef50_D2R2W6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R2W6_9PLAN Length = 185 Score = 38.0 bits (87), Expect = 0.094, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 2/80 (2%) Query: 32 KGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCS 91 L + + +D+ M + L+ + ++ + +T+ +A + Sbjct: 105 MQLTSREQPPDVILENDERMALLR--DALRALRPEEQEIFLLRQNGNLTYEEIAKELNIP 162 Query: 92 DGYIGKRLQKAEGIIEGMLM 111 G + R++ A + +L Sbjct: 163 PGTVKTRMRLALNHLRQVLA 182 >UniRef50_D1X4L6 RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Streptomyces RepID=D1X4L6_9ACTO Length = 162 Score = 38.0 bits (87), Expect = 0.095, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 3/61 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 D +++ +ARL +LV Y ++ + A + + + Sbjct: 98 DTGLVVRQALARLTA---RQRAVLVLRYWEDLSVEATAEALGMRTNTVKSHTARGLAALR 154 Query: 108 G 108 Sbjct: 155 A 155 >UniRef50_B8HNZ8 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HNZ8_CYAP4 Length = 191 Score = 38.0 bits (87), Expect = 0.096, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 58 ARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 A L+ + +L Y G++ +A + S G + R++ ++ + + Sbjct: 133 AALQTLPEEQRLVLELAYYQGLSHSQIASQTGLSLGTVKTRIRLGLSKLKSAFSSKE 189 >UniRef50_A9VWD6 RNA polymerase sigma factor n=40 Tax=cellular organisms RepID=A9VWD6_METEP Length = 271 Score = 38.0 bits (87), Expect = 0.096, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 D + + L K D + LV G+++ A C G + R+ +A G + Sbjct: 190 DRLDVEDLQTALAKLPPDQREALVLVGAEGVSYEEAATIMGCKVGTVKSRVSRARGRLAE 249 Query: 109 MLMALDIRLEMDIVVNN 125 +L + L D ++ + Sbjct: 250 LLGYDEEDLSSDRLIQS 266 >UniRef50_A6LDP1 RNA polymerase ECF-type sigma factor n=3 Tax=Bacteroidales RepID=A6LDP1_PARD8 Length = 160 Score = 38.0 bits (87), Expect = 0.096, Method: Composition-based stats. Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 3/58 (5%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + ++ + ++ L ++ +A + S+ + +L KA + L Sbjct: 89 VDSLIQQMPEGRQRIYKLSRQ---SHLSNREIADQLQISENTVESQLTKAISFLRKRL 143 >UniRef50_A1TML2 Putative uncharacterized protein n=1 Tax=Acidovorax citrulli AAC00-1 RepID=A1TML2_ACIAC Length = 180 Score = 38.0 bits (87), Expect = 0.096, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQC-------CDDDAMIICGC 56 +Q LE WG WA+ S + G + + +R +C + +A+ Sbjct: 47 VQQRLENWGMWASRGGHGSGGYSSQSVLAGWVEADAWARNRCGGSVIPVSEAEALETDRA 106 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 +A K + L+ YV + A + + + RL +A+ I L Sbjct: 107 IASFKDTRPAIAKALILVYVYDFGVVEAAYREKVAQSTMHARLGQADHAIAMWLE 161 >UniRef50_Q0BU49 RNA polymerase ECF-type sigma factor n=11 Tax=Acetobacteraceae RepID=Q0BU49_GRABC Length = 215 Score = 38.0 bits (87), Expect = 0.097, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +D + + +++ D + LV + GM++ LA C+ G R+ +A +E Sbjct: 118 EDRLALKELGKAMERLPVDQREALVMVVIHGMSYEDLAEATGCAVGTAKSRVFRARRQLE 177 Query: 108 GMLMALD 114 LM D Sbjct: 178 AWLMGED 184 >UniRef50_C9YMG7 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C9YMG7_CLODR Length = 145 Score = 38.0 bits (87), Expect = 0.097, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 1/90 (1%) Query: 25 SSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMA-RLKKNNSDLHDLLVDYYVVGMTFMS 83 S +A F R Q D ++ +A L D+++ Y + M+ Sbjct: 50 SELAQLFTTDEYESDYFRFQVSGFDVLVKNELLAEALNALPERKRDIILLSYFLDMSDAE 109 Query: 84 LAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + + + + A I+ L Sbjct: 110 IGELLNVVRTTVFRHRKSALAKIKQYLEGK 139 >UniRef50_C8WMH9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WMH9_EGGLE Length = 198 Score = 38.0 bits (87), Expect = 0.097, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 17/46 (36%) Query: 71 LVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + +YV G T +A + L +A ++ +L R Sbjct: 126 VHLHYVEGYTTDEIARMLHSQPATVRTWLSRARARVKDLLTRESER 171 >UniRef50_D2EVL7 Predicted protein n=1 Tax=Bacteroides sp. D20 RepID=D2EVL7_9BACE Length = 182 Score = 38.0 bits (87), Expect = 0.097, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 49 DAMIICGCMARLKKNNSDLHD-LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 +AM ++++ + +L + Y+ T+ +A + S + K + K+ +++ Sbjct: 101 EAMRQDILISKMLDKLPAMTRHILEECYLARKTYQQVADEMNISPNTVKKHISKSLKMLK 160 >UniRef50_C4DIR0 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DIR0_9ACTO Length = 185 Score = 38.0 bits (87), Expect = 0.097, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%) Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 + L+K + ++L++ + G + A K G + RL A ++ L + Sbjct: 120 VVEALRKLSPAHREVLMECFYGGRSVNEAAEKLAIPAGTVKSRLHYALRALKLALEEAGV 179 Query: 116 RLEMDI 121 + Sbjct: 180 VRREER 185 >UniRef50_C6D1T7 Putative uncharacterized protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1T7_PAESJ Length = 207 Score = 38.0 bits (87), Expect = 0.098, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 19/55 (34%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 ++ I + L+ +L LL YV G + + + ++A Sbjct: 144 EELGQIDTILMALECYKPNLSKLLRLRYVEGESVEETICLLGIVERTYKRWRKQA 198 >UniRef50_C7PJP1 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PJP1_CHIPD Length = 191 Score = 38.0 bits (87), Expect = 0.099, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 57 MARLKKNNSDLHDLLVDYYV-VGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 + L K + ++ + YV G + +A K S G L KA ++ L Sbjct: 125 LIILIKELPPSYQVVFNMYVIDGFSHQEIADKLNISIGTSKSNLAKARAYLQKKLNT 181 >UniRef50_A6EB75 RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB75_9SPHI Length = 194 Score = 38.0 bits (87), Expect = 0.099, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 33/83 (39%) Query: 28 AAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGK 87 AAG + +I +S +D + ++ + +++ Y ++F +A K Sbjct: 104 AAGDQHIIVGSYESILIASQEDEQLKKRLQHAMESLSPRQKEIVKMRYFECLSFKEIAEK 163 Query: 88 HCCSDGYIGKRLQKAEGIIEGML 110 ++ + L A ++ +L Sbjct: 164 TLLTERTVYNTLHNAVNVLRDVL 186 >UniRef50_D1P7A8 Sigma-70 region 2:Sigma-70 region 4 n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P7A8_9ENTR Length = 176 Score = 38.0 bits (87), Expect = 0.100, Method: Composition-based stats. Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 3/60 (5%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 + C L + Y+ G + + + G I +++ ++ + A Sbjct: 120 LDRCFLALTTEKQQA---IKLAYIHGYSHEEIVKRLAHPLGTIKSWIRRGLKELKQCISA 176 >UniRef50_C7DD91 RNA polymerase sigma factor RpoE n=3 Tax=Rhodobacteraceae RepID=C7DD91_9RHOB Length = 240 Score = 38.0 bits (87), Expect = 0.100, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 20/54 (37%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 A L K + +L+ Y ++ +A + G I R++ A + Sbjct: 183 DQLSAALAKLPAKQRELIERAYFGDLSHSEIAEETGLPLGTIKSRIRLALERLR 236 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.147 0.407 Lambda K H 0.267 0.0449 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 663,391,300 Number of Sequences: 3077464 Number of extensions: 19076558 Number of successful extensions: 129939 Number of sequences better than 1.0e-01: 885 Number of HSP's better than 0.1 without gapping: 883 Number of HSP's successfully gapped in prelim test: 350 Number of HSP's that attempted gapping in prelim test: 128837 Number of HSP's gapped (non-prelim): 1259 length of query: 127 length of database: 1,040,396,356 effective HSP length: 93 effective length of query: 34 effective length of database: 754,192,204 effective search space: 25642534936 effective search space used: 25642534936 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.7 bits) S2: 87 (38.0 bits)