BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (127 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=R... 207 1e-52 UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus Re... 120 1e-26 UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax... 114 7e-25 UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifo... 109 2e-23 UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root Re... 106 2e-22 UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root... 105 3e-22 UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteria... 105 5e-22 UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mi... 105 6e-22 UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3W... 100 1e-20 UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax... 100 2e-20 UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteria... 97 1e-19 UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterob... 92 6e-18 UniRef50_Q7MZ44 Similarities with antitermination protein Q from... 89 5e-17 UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escher... 84 1e-15 UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia... 75 5e-13 UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enteroba... 75 8e-13 UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia... 74 1e-12 UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersini... 59 6e-08 UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9Z... 45 0.001 UniRef50_B7MVZ9 Putative uncharacterized protein n=1 Tax=Escheri... 40 0.027 UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acineto... 39 0.035 >UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=REGQ_BP933 Length = 144 Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 98/126 (77%), Positives = 107/126 (84%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+ VLERWGAWAANN+EDVTWS IAAGFKGLI KVKSRPQCCDDDAM+ICGC+ARL Sbjct: 1 MRDIRQVLERWGAWAANNYEDVTWSPIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 +NN DLHDLLVDYYV+G TFM+LA KH CSD IGKRL KAEGI+EGMLM L +RLEMD Sbjct: 61 YRNNRDLHDLLVDYYVLGETFMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMD 120 Query: 121 IVVNNS 126 V Sbjct: 121 RYVERE 126 >UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus RepID=B4EVI6_PROMH Length = 132 Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/123 (49%), Positives = 78/123 (63%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+Q VL RWGAW+AN + +SSIAAGFKGLI S +SR QC DDD + I + L Sbjct: 1 MRDMQEVLSRWGAWSANEGNSIDYSSIAAGFKGLIPSSRRSREQCSDDDGLKINKAVLHL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K NNS L L++ YYV S+A K S + KRLQ AEG IEG L +++L+MD Sbjct: 61 KVNNSYLFQLVIMYYVKNYPLRSMASKLGISHNEVAKRLQTAEGFIEGCLSVDNVKLDMD 120 Query: 121 IVV 123 ++ Sbjct: 121 KII 123 >UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax=Erwinia tasmaniensis RepID=B2VDR7_ERWT9 Length = 123 Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 53/118 (44%), Positives = 80/118 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+++L RWG WAA + ++ +A+GF+GLIT SR QC DDD +II C++RL Sbjct: 1 MRDIKLLLRRWGGWAALGERRLGYAPVASGFRGLITHHASSRLQCSDDDGIIIDSCISRL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 K + + HD+LV +Y+ ++ S+A + C+DG I +++Q AEG I G+L AL+ LE Sbjct: 61 AKVSKEQHDILVAHYLYQISLRSIARRRRCADGSIRRKIQTAEGFICGVLTALESELE 118 >UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifoliae RepID=D2TCJ1_ERWPY Length = 140 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 50/120 (41%), Positives = 83/120 (69%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+I+++L+RWGAWA++ + ++S+A+GF+GLIT +R QC D D +I+ C++RL Sbjct: 19 MRNIKLLLQRWGAWASSGERRLGYASVASGFRGLITHHGGNRLQCSDGDGIILDSCISRL 78 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + HD+LV +Y+ ++ S+A + C+DG I K+LQ AEG + G+L AL+ LE + Sbjct: 79 AMESKEQHDILVAHYLYLISLRSIARRRRCADGTIRKKLQTAEGFVCGVLTALECELECE 138 >UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root RepID=A4TNH3_YERPP Length = 159 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 1/125 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VL RWG WA + +SSIAAGFKGL+ KS+ CCDDD +++ GC+ARL Sbjct: 19 MRDIQLVLARWGVWA-RYSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARL 77 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K+ + ++L++ +YV+ + ++A + + I +Q AEG I+G L L+++L MD Sbjct: 78 KQCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMD 137 Query: 121 IVVNN 125 + N Sbjct: 138 PFIEN 142 >UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root RepID=REGQ_BPAPS Length = 148 Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 1/124 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ VLERWG WA +N+ + WS IAAGFKGL+ + RP C D+D II C+++L+ Sbjct: 3 RDIQQVLERWGTWARDNNTGIDWSPIAAGFKGLLPLRPSMRPSCSDEDGRIIDNCVSQLQ 62 Query: 62 K-NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + L++ YYV G + ++A + +G I +L AEG I+G L L +RL+MD Sbjct: 63 QVRQPEELSLIIAYYVKGYSKRAIARRRRVDEGLIRAKLLIAEGFIDGCLSLLAVRLDMD 122 Query: 121 IVVN 124 V Sbjct: 123 PEVK 126 >UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=B5XSK3_KLEP3 Length = 114 Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 76/110 (69%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+ +++RWGAWAA+++ V W IAAGFK L+ K+R QC DD+ ++I GC+ARL Sbjct: 1 MRDMYEIMDRWGAWAASDNSGVDWQPIAAGFKDLLPHGKKTRQQCDDDEGIMIDGCVARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + ++L++ ++V+GM+ ++A K CSDG I L+ A G +EG+L Sbjct: 61 RMCKPEEYELIIAHFVIGMSLRAIAKKRRCSDGKIRGELRSAMGFVEGVL 110 >UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mirabilis RepID=C2LFC9_PROMI Length = 127 Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 75/115 (65%), Gaps = 2/115 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M+ I ++E WG+W NN ++ +++ + + +VK R C D +I+ CM++L Sbjct: 1 MQKISKLMEAWGSWVVNN--NLYINTLTINKRENVPIRVKLRKACTDRQGIIVSVCMSKL 58 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 KN+ ++LLVDYYV G TF+ LA H CSD YIGK+L+KAEGI+EGML+ ++ Sbjct: 59 LKNHKKDYELLVDYYVFGQTFIQLAQAHRCSDTYIGKKLKKAEGIVEGMLIMAEL 113 >UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3WTB9_ECOLX Length = 140 Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/125 (44%), Positives = 74/125 (59%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLERWG WAA+ V + +AAGFK L+ + R +C D+D +II M+ L Sbjct: 1 MRNIQQVLERWGGWAASEGGSVYFPPVAAGFKNLLPATQSGRLKCSDNDGLIINSAMSCL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KK + L LL +YV M ++ K S ++ KRLQ AEG I+G L LD+ LEMD Sbjct: 61 KKKDPYLCTLLEWHYVQAMPVRAMGEKLGVSHTHVLKRLQAAEGFIDGCLAMLDVVLEMD 120 Query: 121 IVVNN 125 V + Sbjct: 121 QSVQS 125 >UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N2N8_PHOLL Length = 139 Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/121 (44%), Positives = 74/121 (61%), Gaps = 2/121 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLE WG W ++ V W IAAGFKGLI S RP CCD+D +II C+A+L Sbjct: 1 MRNIQQVLECWGGWV-DDATGVNWPPIAAGFKGLIASTRSLRPSCCDNDGLIIDACIAKL 59 Query: 61 KK-NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + S+ ++L YY + ++ S+A D + RLQK E ++G L LDI+LEM Sbjct: 60 QTVDKSEEIEVLFMYYALRLSKRSIARLIKVPDIEVRSRLQKGESFVQGCLAMLDIKLEM 119 Query: 120 D 120 D Sbjct: 120 D 120 >UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=D1NX77_9ENTR Length = 156 Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/121 (43%), Positives = 78/121 (64%), Gaps = 2/121 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLE+W WA+NN V +S IAAGFKGLI++K R C D+D +II +A+L Sbjct: 12 MRDIQLVLEKWAGWASNN-PGVDYSHIAAGFKGLISNKEAPRLSCTDNDGIIIDSVIAKL 70 Query: 61 KKNNSDLH-DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K D +L+V +Y+ G++ +A K S+G + + +Q AEG ++G L + + LEM Sbjct: 71 KAVRKDEELELIVMHYLYGVSKRGIAKKLKVSEGRVRQMMQVAEGFVDGCLAMIGVVLEM 130 Query: 120 D 120 D Sbjct: 131 D 131 >UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBF3_9ENTR Length = 131 Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 1/121 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLERWG WAA V +SS AAGF GL + R CCDDD + I + +L Sbjct: 1 MRDIQLVLERWGGWAAEGKSKVGYSSTAAGFSGLFPESERVRLSCCDDDGIAIDAAIGKL 60 Query: 61 -KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 D DL+ +Y+ ++ ++A + CS+G I ++L AE I+ L+ ++ LEM Sbjct: 61 ISVGRKDEFDLIDKHYIRDISKSAIAREMKCSEGKIRQKLMIAETFIDACLIMANVTLEM 120 Query: 120 D 120 D Sbjct: 121 D 121 >UniRef50_Q7MZ44 Similarities with antitermination protein Q from lamdoid prophage n=2 Tax=Enterobacteriaceae RepID=Q7MZ44_PHOLL Length = 143 Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ +L WG W + + WSS+ AGFKGL++ ++ CCD+D +II GC+A+L+ Sbjct: 3 RDIQKILLHWGGWVVHGRSGLGWSSVTAGFKGLVSRTSITKLSCCDEDGLIIDGCIAKLR 62 Query: 62 KNNSDLH-DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + D + +Y GM+ S+ K+ ++ + KR+ AE I G L A D LE+D Sbjct: 63 NVQMEQECDFIECHYAKGMSKRSIGRKYKLNESEVRKRMAIAESFILGCLTASDETLELD 122 Query: 121 IV 122 ++ Sbjct: 123 LL 124 >UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escherichia coli RepID=B7UQG2_ECO27 Length = 117 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 64/108 (59%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI +L+ WGAW + + W IA +K ++ KSR QC +D+ II + RL++ Sbjct: 6 DICEILDDWGAWVVAGNSSIDWQEIADKYKNVVPHGKKSRRQCSNDEGRIIDISILRLER 65 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 ++L+V ++V+G++ ++A + CSDG I KRLQKA G + G + Sbjct: 66 YKQQEYELIVAHFVIGLSLRAIAKQQGCSDGTIRKRLQKALGFLTGYI 113 >UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia RepID=C4T548_YERIN Length = 121 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 5/123 (4%) Query: 1 MRDIQMVLERWGAWAANN-HEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 M +IQ VL RWG WA N H D + IA GFKG++ + K CCD+D ++I + Sbjct: 1 MSNIQTVLARWGVWARENIHLD--YPHIANGFKGMVM-RNKPAESCCDNDGLVIDKTIGN 57 Query: 60 LKKNNSDLH-DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 L++ + + +L++ +YV G + S+A C++ I ++LQ AE IEG ++ D LE Sbjct: 58 LQRASREKELELILRHYVYGQSKASIARLKKCNEREIRRQLQLAESFIEGGIVQSDAALE 117 Query: 119 MDI 121 M + Sbjct: 118 MHM 120 >UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enterobacteriaceae RepID=D2U0V3_9ENTR Length = 142 Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 2 RDIQMVLERWGAW-AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RDI+ +L WG W A N + V+W +A+GF + SR C D D ++I C++RL Sbjct: 3 RDIEKILLHWGGWCAGNPYASVSWLPVASGFNRFMPFST-SRLSCSDADGLVIDVCVSRL 61 Query: 61 KK-NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + DYY+ G++ ++A K + + KR+Q AEG + G L LDI+L++ Sbjct: 62 NTVGMARELSYIEDYYIRGISKRAIARKFAVREDEVRKRMQIAEGFVLGCLETLDIQLDI 121 Query: 120 DIV 122 D + Sbjct: 122 DTL 124 >UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia RepID=C4SH18_YERMO Length = 124 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M DIQ VL RWG WA +N + + IA+GF+G ITS K C D+D + I + L Sbjct: 1 MADIQTVLTRWGVWARDN-AHLDYPHIASGFRG-ITSGGKQLESCSDNDGLAIDTTVGYL 58 Query: 61 KKNNSDLH-DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K+ + DL++ +YV G + S+A C++ I ++LQ AE I+G I LEM Sbjct: 59 KRAAREKELDLIIRHYVYGQSKASIARLKKCNEREIRRQLQIAESFIDGCFTQSHITLEM 118 >UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JRS6_YERPY Length = 141 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 5/122 (4%) Query: 2 RDIQMVLERWGAWAANNH--EDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R++Q+V ERWG WAA+ V W +++ + L + +P C D+D + + C+A Sbjct: 3 RNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQL--PQASGKPSCTDEDGLTLDTCIAH 60 Query: 60 LKKNNSDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 + L++ Y+ G + +A + + LQ +E + G L+ L IRLE Sbjct: 61 MSTVFPQASLLILGQRYIGGHSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLE 120 Query: 119 MD 120 MD Sbjct: 121 MD 122 >UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9ZMR7_ECOLX Length = 162 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 8 LERWGAWAANNHEDVTWSSIAAGF-KGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSD 66 LE WGAW + + SS+ A F + + +V +RP C DDD M+I + + + Sbjct: 20 LELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDKK 79 Query: 67 LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNS 126 +L+ YY G + ++A + S K L + G I+ +A R E+D ++N S Sbjct: 80 AFGILLSYYAHGSSKHAIAS-YYHSVARPRKMLCRGGGRIQKPSLA-TCRREVDEILNAS 137 >UniRef50_B7MVZ9 Putative uncharacterized protein n=1 Tax=Escherichia coli ED1a RepID=B7MVZ9_ECO81 Length = 57 Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust. Identities = 19/30 (63%), Positives = 24/30 (80%) Query: 98 RLQKAEGIIEGMLMALDIRLEMDIVVNNSN 127 +LQ+ EGII+GMLM LDIR+ DIVV S+ Sbjct: 8 KLQEVEGIIKGMLMTLDIRIGTDIVVIKSS 37 >UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0S8S0_ACIJO Length = 136 Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 1 MRDIQMVLERWGAW---AANNHEDVTWSSIAAGFKGLITSKVKSRPQC-CDDDAMI-ICG 55 +R +Q L +WG W A+ N ++T++S G L + S Q DDDA++ I Sbjct: 11 VRMMQNELAQWGKWARHASYNPSELTYTSPTYGLMRLKEGQKSSGIQVMLDDDALVAIDH 70 Query: 56 CMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 + +L+ + DL+ + +Y+ G LA K I K L AE ++ L L Sbjct: 71 LVTQLRFSRPDLYQWIEFHYLKGYPIAVLASKTKVDRRNIDKFLLAAETWLDSRLDFLLC 130 Query: 116 RLEMD 120 +L+ D Sbjct: 131 QLKKD 135 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=R... 192 4e-48 UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root Re... 181 7e-45 UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3W... 180 2e-44 UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root... 179 2e-44 UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus Re... 173 1e-42 UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax... 172 4e-42 UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteria... 171 6e-42 UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax... 169 3e-41 UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterob... 167 8e-41 UniRef50_Q7MZ44 Similarities with antitermination protein Q from... 167 1e-40 UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifo... 166 2e-40 UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteria... 161 5e-39 UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia... 155 3e-37 UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enteroba... 150 2e-35 UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia... 149 2e-35 UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersini... 145 5e-34 UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escher... 145 5e-34 UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mi... 134 7e-31 UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9Z... 119 2e-26 Sequences not found previously or not previously below threshold: UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhab... 90 2e-17 UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acineto... 68 1e-10 UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23... 67 2e-10 UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenoph... 62 7e-09 UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteur... 57 3e-07 UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acineto... 56 4e-07 UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseu... 55 8e-07 UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseud... 55 8e-07 UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudom... 54 1e-06 UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudom... 50 2e-05 UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemoph... 50 3e-05 UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acineto... 49 3e-05 UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinob... 49 5e-05 UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magneto... 48 7e-05 UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellacea... 48 8e-05 UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candida... 48 8e-05 UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannh... 45 6e-04 UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 45 8e-04 UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella... 45 9e-04 UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae Re... 44 0.001 UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Man... 43 0.003 UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobac... 43 0.003 UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root Re... 43 0.003 UniRef50_B2VDS9 Putative uncharacterized protein n=1 Tax=Erwinia... 42 0.005 UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax... 42 0.008 UniRef50_A2RP52 Putative uncharacterized protein ps612 n=2 Tax=L... 41 0.010 UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acineto... 40 0.017 UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelo... 40 0.018 UniRef50_UPI00016C5360 RNA polymerase sigma factor sigW n=1 Tax=... 40 0.019 UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella... 39 0.036 UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfo... 39 0.039 UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechoco... 39 0.046 UniRef50_A9AW11 RNA polymerase, sigma-24 subunit, ECF subfamily ... 38 0.062 UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Ta... 38 0.070 UniRef50_Q6ANY1 Related to RNA polymerase sigma factor for flage... 38 0.087 >UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=REGQ_BP933 Length = 144 Score = 192 bits (487), Expect = 4e-48, Method: Composition-based stats. Identities = 98/126 (77%), Positives = 107/126 (84%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+ VLERWGAWAANN+EDVTWS IAAGFKGLI KVKSRPQCCDDDAM+ICGC+ARL Sbjct: 1 MRDIRQVLERWGAWAANNYEDVTWSPIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 +NN DLHDLLVDYYV+G TFM+LA KH CSD IGKRL KAEGI+EGMLM L +RLEMD Sbjct: 61 YRNNRDLHDLLVDYYVLGETFMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMD 120 Query: 121 IVVNNS 126 V Sbjct: 121 RYVERE 126 >UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root RepID=A4TNH3_YERPP Length = 159 Score = 181 bits (459), Expect = 7e-45, Method: Composition-based stats. Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 1/125 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VL RWG WA + +SSIAAGFKGL+ KS+ CCDDD +++ GC+ARL Sbjct: 19 MRDIQLVLARWGVWAR-YSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARL 77 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K+ + ++L++ +YV+ + ++A + + I +Q AEG I+G L L+++L MD Sbjct: 78 KQCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMD 137 Query: 121 IVVNN 125 + N Sbjct: 138 PFIEN 142 >UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3WTB9_ECOLX Length = 140 Score = 180 bits (456), Expect = 2e-44, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 74/126 (58%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLERWG WAA+ V + +AAGFK L+ + R +C D+D +II M+ L Sbjct: 1 MRNIQQVLERWGGWAASEGGSVYFPPVAAGFKNLLPATQSGRLKCSDNDGLIINSAMSCL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KK + L LL +YV M ++ K S ++ KRLQ AEG I+G L LD+ LEMD Sbjct: 61 KKKDPYLCTLLEWHYVQAMPVRAMGEKLGVSHTHVLKRLQAAEGFIDGCLAMLDVVLEMD 120 Query: 121 IVVNNS 126 V + Sbjct: 121 QSVQSK 126 >UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root RepID=REGQ_BPAPS Length = 148 Score = 179 bits (455), Expect = 2e-44, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 1/124 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ VLERWG WA +N+ + WS IAAGFKGL+ + RP C D+D II C+++L+ Sbjct: 3 RDIQQVLERWGTWARDNNTGIDWSPIAAGFKGLLPLRPSMRPSCSDEDGRIIDNCVSQLQ 62 Query: 62 KNN-SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + L++ YYV G + ++A + +G I +L AEG I+G L L +RL+MD Sbjct: 63 QVRQPEELSLIIAYYVKGYSKRAIARRRRVDEGLIRAKLLIAEGFIDGCLSLLAVRLDMD 122 Query: 121 IVVN 124 V Sbjct: 123 PEVK 126 >UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus RepID=B4EVI6_PROMH Length = 132 Score = 173 bits (439), Expect = 1e-42, Method: Composition-based stats. Identities = 61/125 (48%), Positives = 78/125 (62%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+Q VL RWGAW+AN + +SSIAAGFKGLI S +SR QC DDD + I + L Sbjct: 1 MRDMQEVLSRWGAWSANEGNSIDYSSIAAGFKGLIPSSRRSREQCSDDDGLKINKAVLHL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K NNS L L++ YYV S+A K S + KRLQ AEG IEG L +++L+MD Sbjct: 61 KVNNSYLFQLVIMYYVKNYPLRSMASKLGISHNEVAKRLQTAEGFIEGCLSVDNVKLDMD 120 Query: 121 IVVNN 125 ++ Sbjct: 121 KIIRK 125 >UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N2N8_PHOLL Length = 139 Score = 172 bits (435), Expect = 4e-42, Method: Composition-based stats. Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 2/126 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLE WG W ++ V W IAAGFKGLI S RP CCD+D +II C+A+L Sbjct: 1 MRNIQQVLECWGGWV-DDATGVNWPPIAAGFKGLIASTRSLRPSCCDNDGLIIDACIAKL 59 Query: 61 KKNNS-DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + + ++L YY + ++ S+A D + RLQK E ++G L LDI+LEM Sbjct: 60 QTVDKSEEIEVLFMYYALRLSKRSIARLIKVPDIEVRSRLQKGESFVQGCLAMLDIKLEM 119 Query: 120 DIVVNN 125 D + Sbjct: 120 DDEIQK 125 >UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=D1NX77_9ENTR Length = 156 Score = 171 bits (434), Expect = 6e-42, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 79/124 (63%), Gaps = 2/124 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLE+W WA +N+ V +S IAAGFKGLI++K R C D+D +II +A+L Sbjct: 12 MRDIQLVLEKWAGWA-SNNPGVDYSHIAAGFKGLISNKEAPRLSCTDNDGIIIDSVIAKL 70 Query: 61 KKNNSDLH-DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K D +L+V +Y+ G++ +A K S+G + + +Q AEG ++G L + + LEM Sbjct: 71 KAVRKDEELELIVMHYLYGVSKRGIAKKLKVSEGRVRQMMQVAEGFVDGCLAMIGVVLEM 130 Query: 120 DIVV 123 D V Sbjct: 131 DSEV 134 >UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax=Erwinia tasmaniensis RepID=B2VDR7_ERWT9 Length = 123 Score = 169 bits (428), Expect = 3e-41, Method: Composition-based stats. Identities = 53/122 (43%), Positives = 82/122 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+++L RWG WAA + ++ +A+GF+GLIT SR QC DDD +II C++RL Sbjct: 1 MRDIKLLLRRWGGWAALGERRLGYAPVASGFRGLITHHASSRLQCSDDDGIIIDSCISRL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K + + HD+LV +Y+ ++ S+A + C+DG I +++Q AEG I G+L AL+ LE + Sbjct: 61 AKVSKEQHDILVAHYLYQISLRSIARRRRCADGSIRRKIQTAEGFICGVLTALESELECE 120 Query: 121 IV 122 + Sbjct: 121 NL 122 >UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBF3_9ENTR Length = 131 Score = 167 bits (424), Expect = 8e-41, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLERWG WAA V +SS AAGF GL + R CCDDD + I + +L Sbjct: 1 MRDIQLVLERWGGWAAEGKSKVGYSSTAAGFSGLFPESERVRLSCCDDDGIAIDAAIGKL 60 Query: 61 -KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 D DL+ +Y+ ++ ++A + CS+G I ++L AE I+ L+ ++ LEM Sbjct: 61 ISVGRKDEFDLIDKHYIRDISKSAIAREMKCSEGKIRQKLMIAETFIDACLIMANVTLEM 120 Query: 120 DIVVNNSN 127 D ++ Sbjct: 121 DEWCKKTS 128 >UniRef50_Q7MZ44 Similarities with antitermination protein Q from lamdoid prophage n=2 Tax=Enterobacteriaceae RepID=Q7MZ44_PHOLL Length = 143 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ +L WG W + + WSS+ AGFKGL++ ++ CCD+D +II GC+A+L+ Sbjct: 3 RDIQKILLHWGGWVVHGRSGLGWSSVTAGFKGLVSRTSITKLSCCDEDGLIIDGCIAKLR 62 Query: 62 KNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + D + +Y GM+ S+ K+ ++ + KR+ AE I G L A D LE+D Sbjct: 63 NVQMEQECDFIECHYAKGMSKRSIGRKYKLNESEVRKRMAIAESFILGCLTASDETLELD 122 Query: 121 IV 122 ++ Sbjct: 123 LL 124 >UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifoliae RepID=D2TCJ1_ERWPY Length = 140 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 50/120 (41%), Positives = 83/120 (69%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+I+++L+RWGAWA++ + ++S+A+GF+GLIT +R QC D D +I+ C++RL Sbjct: 19 MRNIKLLLQRWGAWASSGERRLGYASVASGFRGLITHHGGNRLQCSDGDGIILDSCISRL 78 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + HD+LV +Y+ ++ S+A + C+DG I K+LQ AEG + G+L AL+ LE + Sbjct: 79 AMESKEQHDILVAHYLYLISLRSIARRRRCADGTIRKKLQTAEGFVCGVLTALECELECE 138 >UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=B5XSK3_KLEP3 Length = 114 Score = 161 bits (408), Expect = 5e-39, Method: Composition-based stats. Identities = 48/114 (42%), Positives = 77/114 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+ +++RWGAWAA+++ V W IAAGFK L+ K+R QC DD+ ++I GC+ARL Sbjct: 1 MRDMYEIMDRWGAWAASDNSGVDWQPIAAGFKDLLPHGKKTRQQCDDDEGIMIDGCVARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++L++ ++V+GM+ ++A K CSDG I L+ A G +EG+L + Sbjct: 61 RMCKPEEYELIIAHFVIGMSLRAIAKKRRCSDGKIRGELRSAMGFVEGVLCIIH 114 >UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia RepID=C4SH18_YERMO Length = 124 Score = 155 bits (393), Expect = 3e-37, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M DIQ VL RWG WA +N + + IA+GF+G ITS K C D+D + I + L Sbjct: 1 MADIQTVLTRWGVWARDN-AHLDYPHIASGFRG-ITSGGKQLESCSDNDGLAIDTTVGYL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K+ + DL++ +YV G + S+A C++ I ++LQ AE I+G I LEM Sbjct: 59 KRAAREKELDLIIRHYVYGQSKASIARLKKCNEREIRRQLQIAESFIDGCFTQSHITLEM 118 Query: 120 DI 121 Sbjct: 119 HK 120 >UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enterobacteriaceae RepID=D2U0V3_9ENTR Length = 142 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 2 RDIQMVLERWGAW-AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RDI+ +L WG W A N + V+W +A+GF + SR C D D ++I C++RL Sbjct: 3 RDIEKILLHWGGWCAGNPYASVSWLPVASGFNRFMPFST-SRLSCSDADGLVIDVCVSRL 61 Query: 61 KKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + DYY+ G++ ++A K + + KR+Q AEG + G L LDI+L++ Sbjct: 62 NTVGMARELSYIEDYYIRGISKRAIARKFAVREDEVRKRMQIAEGFVLGCLETLDIQLDI 121 Query: 120 DIVVN 124 D + Sbjct: 122 DTLYK 126 >UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia RepID=C4T548_YERIN Length = 121 Score = 149 bits (376), Expect = 2e-35, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M +IQ VL RWG WA N + + IA GFKG++ + K CCD+D ++I + L Sbjct: 1 MSNIQTVLARWGVWAREN-IHLDYPHIANGFKGMVM-RNKPAESCCDNDGLVIDKTIGNL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 ++ + + +L++ +YV G + S+A C++ I ++LQ AE IEG ++ D LEM Sbjct: 59 QRASREKELELILRHYVYGQSKASIARLKKCNEREIRRQLQLAESFIEGGIVQSDAALEM 118 Query: 120 DI 121 + Sbjct: 119 HM 120 >UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JRS6_YERPY Length = 141 Score = 145 bits (365), Expect = 5e-34, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 2 RDIQMVLERWGAWAANNH--EDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R++Q+V ERWG WAA+ V W +++ + L + +P C D+D + + C+A Sbjct: 3 RNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQL--PQASGKPSCTDEDGLTLDTCIAH 60 Query: 60 LKKNNSDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 + L++ Y+ G + +A + + LQ +E + G L+ L IRLE Sbjct: 61 MSTVFPQASLLILGQRYIGGHSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLE 120 Query: 119 MDIVV 123 MD V Sbjct: 121 MDPEV 125 >UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escherichia coli RepID=B7UQG2_ECO27 Length = 117 Score = 145 bits (365), Expect = 5e-34, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 64/109 (58%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI +L+ WGAW + + W IA +K ++ KSR QC +D+ II + RL++ Sbjct: 6 DICEILDDWGAWVVAGNSSIDWQEIADKYKNVVPHGKKSRRQCSNDEGRIIDISILRLER 65 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++L+V ++V+G++ ++A + CSDG I KRLQKA G + G + Sbjct: 66 YKQQEYELIVAHFVIGLSLRAIAKQQGCSDGTIRKRLQKALGFLTGYIA 114 >UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mirabilis RepID=C2LFC9_PROMI Length = 127 Score = 134 bits (338), Expect = 7e-31, Method: Composition-based stats. Identities = 49/115 (42%), Positives = 75/115 (65%), Gaps = 2/115 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M+ I ++E WG+W NN+ + +++ + + +VK R C D +I+ CM++L Sbjct: 1 MQKISKLMEAWGSWVVNNN--LYINTLTINKRENVPIRVKLRKACTDRQGIIVSVCMSKL 58 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 KN+ ++LLVDYYV G TF+ LA H CSD YIGK+L+KAEGI+EGML+ ++ Sbjct: 59 LKNHKKDYELLVDYYVFGQTFIQLAQAHRCSDTYIGKKLKKAEGIVEGMLIMAEL 113 >UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9ZMR7_ECOLX Length = 162 Score = 119 bits (299), Expect = 2e-26, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 8 LERWGAWAANNHEDVTWSSIAAGF-KGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSD 66 LE WGAW + + SS+ A F + + +V +RP C DDD M+I + + + Sbjct: 20 LELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDKK 79 Query: 67 LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNS 126 +L+ YY G + ++A + S K L + G I+ +A R E+D ++N S Sbjct: 80 AFGILLSYYAHGSSKHAIAS-YYHSVARPRKMLCRGGGRIQKPSLA-TCRREVDEILNAS 137 >UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BH46_PHOAA Length = 174 Score = 90.4 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFK-GLITSKVKSRPQCCDDDAMIICGCMARLKK 62 I L WGAW + ++ F + S K+R C DDD M+I + + Sbjct: 28 IDSWLSLWGAWVYSGRIGKCQINMIYKFMVSVKPSNNKTRQMCNDDDGMLISRVVDSVMF 87 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 + + +L+ YY G + +S+A + K + ++ G ++ R E+D + Sbjct: 88 IDKKAYGILLSYYAHGASKLSIAS-YYHRVANPRKMMTRSGGRLKKP-SRGTCRREVDEI 145 Query: 123 VNNS 126 +N S Sbjct: 146 LNAS 149 >UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0S8S0_ACIJO Length = 136 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQCC-DDDAMI-ICGC 56 R +Q L +WG WA + N ++T++S G L + S Q DDDA++ I Sbjct: 12 RMMQNELAQWGKWARHASYNPSELTYTSPTYGLMRLKEGQKSSGIQVMLDDDALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + +L+ + DL+ + +Y+ G LA K I K L AE ++ L L + Sbjct: 72 VTQLRFSRPDLYQWIEFHYLKGYPIAVLASKTKVDRRNIDKFLLAAETWLDSRLDFLLCQ 131 Query: 117 LEMD 120 L+ D Sbjct: 132 LKKD 135 >UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23 n=4 Tax=Enterobacteriaceae RepID=D1P374_9ENTR Length = 176 Score = 66.5 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKS-RPQCCDDDAMIICGCMARLKK 62 +Q L R+GAW + + SS+ A F + + RP C DDD ++I + ++ Sbjct: 21 LQNWLARFGAWVYSGRLEKRQSSMIAEFMATVERRSYPDRPTCSDDDGLLIHDVVDQIYH 80 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 ++ +L+ YV + ++A + + ++ + + R E++++ Sbjct: 81 LDTIAFKMLLSRYVYCASDRAIASSYY-ENCEPRIMPRRNGLLRKRKPSISTCRREVEVI 139 Query: 123 VNNS 126 + ++ Sbjct: 140 LKST 143 >UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2TX54_9ENTR Length = 115 Score = 61.5 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 10/110 (9%) Query: 2 RDIQMVLERWGAWAAN--NHEDVTWSSIA-AGFKGLITSKVKSRPQCCDDDAMIICGCMA 58 R ++ +LE WG W+ + E SSIA F RP D++ I+ +A Sbjct: 3 RHVKDLLEAWGNWSMSRIGTEYKGMSSIAPVKFDD-------DRPWLSDEEGEIVDKAVA 55 Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 LK+ + D ++++ +Y ++ +A YI + +AE I G Sbjct: 56 GLKRYDIDGYNIICLHYQHHISCRMIAKNWKKRPDYITAYMGRAESYIAG 105 >UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteurellaceae RepID=B0QXB5_HAEPR Length = 121 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR-PQCCDDDAM-IICGCMARL 60 D++ VL WG + + ++ + + + K R DDD + + + L Sbjct: 4 DVKRVLMLWGGYVRFTDCK-GYPTMQSFMRESPEMRTKRRYLARLDDDTLEKVDIQIRYL 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 +++ DLL YV G + K S G L+ AE +EG L+ I L Sbjct: 63 EQHFPKQFDLLFFRYVCGYEPNQVWRKLSLSKGSYENELRLAERFVEGALVGSQISL 119 >UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AB307-0294 RepID=B7GXQ5_ACIB3 Length = 132 Score = 55.8 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 5/111 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQCC-DDDAMI-ICGC 56 R +Q L +WG WA N N ++ + S + G L Q +D+A++ I Sbjct: 12 RMMQNELAQWGKWARNASFNPSELIYKSPSLGLMRLKEGFKSKGIQVTLNDEALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +LK + DL+ + +Y+ G LA I K L AE ++ Sbjct: 72 VMQLKLSRPDLYQWIEFHYLKGYPVAVLATHTKVDRRNIDKYLLAAETWLD 122 >UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseudomonas putida KT2440 RepID=Q88ML3_PSEPK Length = 113 Score = 55.0 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 17/123 (13%) Query: 1 MRDIQM----VLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGC 56 M +++ +LE WG W S A + I P DDDA+ I Sbjct: 1 MSNVEKSAEYLLEHWGRWVVLGSG----VSCCASRENTILD-----PMITDDDALFIDRL 51 Query: 57 MARLKKNNSDLHDLLVDYYV-VGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 + RL K + +++ YY + + K + + + I+G A+DI Sbjct: 52 VGRLSKRYPECGQVIIKYYTSRDTSLRDVGKKLGFGEEKTRQLWKAGVAWIDG---AIDI 108 Query: 116 RLE 118 R E Sbjct: 109 RRE 111 >UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseudomonas phage PAJU2 RepID=B5WZY8_BPPAJ Length = 124 Score = 55.0 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 1/114 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RD + +L +WG W S + A + + + DDDAM+I G +AR+ Sbjct: 3 RDAEELLTQWGKWVWQETGVPRCGSPMLAIMRDNVAMEQCLSASISDDDAMLIDGIIARM 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++ + + YY MT + + + + L +E +L + Sbjct: 63 GRRDEEMANCVRVYYATEMTMQQVGKLLNLNRLKVRELLIAGRCYVEAVLDMRE 116 >UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudomonas RepID=B1J5L6_PSEPW Length = 129 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRPQC-CDDDAMIICGCMARL 60 D + +LE+WG W + + S + A + + S+ +R DD A+II G +ARL Sbjct: 13 DTEYMLEQWGWWRMSEMGVPRYVSPLYALMRDNVPSEGGARQHVITDDLALIIDGAVARL 72 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 K N + D + YY M + + S+ + ++ I+ Sbjct: 73 TKRNQQMGDFVWAYYGSKHPAMRVGREAGMSERKAREIIKAGVAWID 119 >UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=B7V4N4_PSEA8 Length = 124 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 4 IQMVLERWGAWA-ANNHEDVTWSSIAAGFKGLITSKVK---SRPQCCDDDAMIICGCMAR 59 ++ ++E++G W ++N S + A K ++ + P DD A+ + +AR Sbjct: 6 LEFLMEQYGLWVWSDNGTPRGSSPMLALMKRNPANEKRFAAVAPCISDDRALQVDRFLAR 65 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 L + D L+ Y++ GM++ + + S ++ + + + Sbjct: 66 LYDEDPDAIRSLILYFIHGMSYRDIQDRMGISYADARMLVRAGLSALLACFVMEE 120 >UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemophilus influenzae RepID=Q4QKY2_HAEI8 Length = 121 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 3/100 (3%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI++ R+G WA + + +I + P D+ AM I ++ Sbjct: 8 DIKLTARRYGKWAREG-VGINYPAIQPFLRKSTPDHGI--PMLDDETAMRIHDATLIMRN 64 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 +L+ + + YV ++ + + S I L A Sbjct: 65 VTPELYQVFMLRYVSNLSQGDVGREMRVSVPTIKSYLYAA 104 >UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A7FBC6_ACIBT Length = 166 Score = 49.2 bits (116), Expect = 3e-05, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 13/127 (10%) Query: 4 IQMVLERWGAWAANNHEDVTWSS------IAAGFKGLI-TSKVKSRPQC--CDDDAMIIC 54 I+ LE++GAW ++ + + + +G+ ++ +S PQC D+A + Sbjct: 19 IENWLEQFGAWINEDNAETYLGTRNTLTYLIDSVEGVKRDARKRSLPQCKISTDEARAVS 78 Query: 55 GCMARLKKNN----SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G + L+ N + D +V YYV G++ ++A CS + + L+ I G Sbjct: 79 GLLRDLRMNPNPTLQEWLDFVVLYYVHGLSEETIADISKCSRNAVRQDLKCGIAYIVGQR 138 Query: 111 MALDIRL 117 L +L Sbjct: 139 NTLRSKL 145 >UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNN9_ACTSZ Length = 116 Score = 48.8 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 2/107 (1%) Query: 10 RWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHD 69 R+G W N+ + + G KG +K P DD+ M+I + +K+ N D Sbjct: 9 RFGYW-GNSRLETDYPVATVGIKGADRTKPYLDPL-SDDEGMLIDKGLLLMKQINFDQFH 66 Query: 70 LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + YV + S + L +AE + G L+ ++ Sbjct: 67 VFMLTYVKRYDRADICHFKNISLKHYYNLLHEAESFLIGYLLRGEVV 113 >UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8A2_MAGSM Length = 144 Score = 48.4 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 6 MVLERWGAWAANNHEDVTWSSIAAGFKGLITSK------VKSRPQCCDDDAMIICGCMAR 59 +L+ W W+ + + I + L+ + + + + ++++ +++ Sbjct: 17 ELLQEWARWSRSGMSSQ--NPITS--TQLLMRRAAGHVGRSLKYENSEQQSLLVDCVISK 72 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 + K LL ++Y+ +A + S G + +AEG+ EG Sbjct: 73 MAKIFPHEVTLLQEFYLGKKGMRIIARERVFSYGKVQTLRSRAEGLFEG 121 >UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellaceae RepID=C6AM41_AGGAN Length = 168 Score = 48.1 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%) Query: 11 WGAWAANNHEDV-TWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR-LKKNNSDLH 68 WGAW D ++ IA K +I + S P C D+ M+I + + KN+ LH Sbjct: 24 WGAWIRLGRLDKPEFNIIAKLMKSVIPADP-SEPVCSDEVGMMISELIEQFFFKNDRTLH 82 Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++ YYV T +A K + G + + + I Sbjct: 83 YIVFSYYVNKNTINRIAVKLRENCGEMKMQPCAGKSDI 120 >UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W3_HAMD5 Length = 92 Score = 48.1 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 47 DDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D++A I+ +ARLK +S +D++V Y ++ ++ I L ++E I Sbjct: 4 DNEAQIVDRAVARLKHFDSLGYDIIVACYRGKVSCRAIGRALKRDHKSISGYLTRSEAYI 63 Query: 107 EGMLMAL 113 G + AL Sbjct: 64 AGQVDAL 70 >UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannheimia haemolytica RepID=A7JW96_PASHA Length = 157 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 12/113 (10%) Query: 4 IQMVLERWGAWAANN---HEDVTW----SSIAAGFKGLITSKVKSRPQCCDDDAMIICGC 56 I+ +L WGAW V A G K L SR C D +I Sbjct: 19 IEELLRLWGAWEFGGLDLESRVNMIYRLMKSAEGVKSL-----SSREVCNDSLGTLINEI 73 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 + K + L D+L Y G + +A + D K + E I + Sbjct: 74 FTVVTKRDVMLADILKQKYWFGRSERQIAIYYQLRDSEGRKERRWQEIIQDKC 126 >UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0ATZ3_SYNWW Length = 206 Score = 45.0 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 48 DDAMIICGCMARLK------KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 +D +++ + L+ K + D+++ YY + S+A + I + Q+ Sbjct: 129 EDKLLLSSYIPALQEAVLAAKIKPEEWDIIIAYYAYNESDRSIAVRLKKPINTIKSKRQR 188 Query: 102 AEGIIEG 108 A ++ Sbjct: 189 AMARLQK 195 >UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SI66_HAHCH Length = 128 Score = 44.6 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 9/105 (8%) Query: 8 LERWGAWAANNHEDVTWSSIAAGFKGLIT--SKVKSRPQCCDDDAMIICGCMARLKKNNS 65 L R+G W + F+ + T DD A+I+ +A L + Sbjct: 14 LVRYGRWVRAGG-------VLPRFERVETCLDDYDGSELLTDDQALIVDKALALLSRVQP 66 Query: 66 DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + Y+ +A S G + L+ E I+ G+L Sbjct: 67 FEGKAIKWAYIDRREIRVIARDLGRSYGAARELLRMGECIMSGLL 111 >UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae RepID=B7UQ12_ECO27 Length = 180 Score = 43.8 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 32/117 (27%) Query: 4 IQMVLERWGAWAANN------------------------------HEDVTWSSIAAGFKG 33 IQ L WG W+ + + A + Sbjct: 24 IQGKLRMWGRWSYIGGGKPGNMFNQLLASKKLTKTAVNEALRRIRESGIDKPELEAFLRE 83 Query: 34 LITSKVKSRPQ-CCDDDAMIICGCMARLKKNNSDLHDLLVDYYV-VGMTFMSLAGKH 88 +I + KS C D +A+ I G +++ L D+L Y GM+ +A Sbjct: 84 MIAGRQKSWLSHCTDAEALRIDGVISKALARYPGLIDILRQRYEGRGMSKRKMAELL 140 >UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Mannheimia haemolytica serotype A2 RepID=UPI0001BCFD6E Length = 146 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 28/142 (19%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR--PQCCDDDAMIICGCMARL 60 DI+ VL WG++ + ++ A + + K R P+ DD + + +L Sbjct: 4 DIKGVLNLWGSFVRFTDCK-GYPTMQAFMRESPQEREKQRYLPRLDDDTLAKVDRQIRKL 62 Query: 61 --------------KKNNSD-----------LHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 K N+ +L YV G+ + K S G Sbjct: 63 DPAGKAKAYLANLAKPNDKREELESLESDELQFAILYLRYVAGLENKPIWQKLSLSKGAF 122 Query: 96 GKRLQKAEGIIEGMLMALDIRL 117 L+ AE +EG+L+ +IRL Sbjct: 123 ENELRLAERFVEGVLIGSEIRL 144 >UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobacterium nucleatum subsp. polymorphum ATCC 10953 RepID=A5TWC9_FUSNP Length = 150 Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKR 98 ++ + LK + ++++ YY+ GM +A K + + K Sbjct: 82 LVDSGIGYLKDCHFKHYEIIELYYIKGMKLKQIASKLGINPATVSKN 128 >UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root RepID=A5UER2_HAEIG Length = 122 Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 40/113 (35%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKN 63 ++ VLE+WG + + S L T + DD+ + I + L ++ Sbjct: 5 VERVLEKWGNCWGRDRIGTEYPSTTISIPVLPTVRKAHIRFLTDDECLKIEEQIMNLHED 64 Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + +L+ YV + S + + K ++G I+ Sbjct: 65 SLLQYQILMALYVQQANERDICTALHISPACMYRERAKGVRFLKGAFTGAKIK 117 >UniRef50_B2VDS9 Putative uncharacterized protein n=1 Tax=Erwinia tasmaniensis RepID=B2VDS9_ERWT9 Length = 49 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 82 MSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 ++A + G I + + AEG I+G L LD+RL+M+ Sbjct: 12 RAVAQVDA-ARGIIRIKFKMAEGFIQGCLSMLDVRLDME 49 >UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI000045D91D Length = 125 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 8/117 (6%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR----PQCCDDDAMIICGCMA 58 DI L RWG A + + A + + + DDD + + G Sbjct: 5 DIDATLFRWGRHAKS-RIGTEFPCKCASW---VADSQSKKHYHIDLTTDDDLIEMDGITK 60 Query: 59 RLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 LK+ + + +L+ YV+ L S + + L A+ + G ++A ++ Sbjct: 61 NLKQYDEQAYYVLLGNYVMRYDEKQLVKDLDISKTTLYRSLTIAKSFVFGAVIAKNL 117 >UniRef50_A2RP52 Putative uncharacterized protein ps612 n=2 Tax=Lactococcus lactis subsp. cremoris MG1363 RepID=A2RP52_LACLM Length = 100 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 22/45 (48%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGK 97 I +L + + ++V +++ + ++A + S+GYI K Sbjct: 40 INKVFEQLNAEHPREYKIIVRHHLKRTYYTTIAREQGVSEGYIRK 84 >UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acinetobacter baumannii RepID=B0VTT6_ACIBS Length = 145 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 9/115 (7%) Query: 8 LERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRP---QCC--DDDAMIICGCMARLKK 62 LE++G W + V+ + +A T++++S C D +A+ + +A + Sbjct: 21 LEQYGLWVRSTKSKVSANPLACLIDQNDTTRIRSSKVSMPCEIEDYEAVEVSKLLAAMHN 80 Query: 63 NNSDLHD----LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + + LL+ Y ++ ++A H + K + K ++G + AL Sbjct: 81 DEREFLQERAWLLILKYENDWSYRTIANTHGVGKDTVRKEIDKGLAYLDGKIEAL 135 >UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW5_DICNV Length = 118 Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 1/116 (0%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKN 63 I+ +L WG W+ + A F + D+ I + L+ N Sbjct: 3 IEELLVAWGEWSRKDVLPARPRCFIAAFCRRSARDADDSVELDDEACEQINEGLMVLRGN 62 Query: 64 NSDLHDLLVDYYVVG-MTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 + +HD+L+ Y+ ++A +H S+ + ++ +EG L + R E Sbjct: 63 HQRIHDVLISRYLYNEYNDKAVAKRHGISESTVKDYRRRGHLFLEGWLCSCSQRSE 118 >UniRef50_UPI00016C5360 RNA polymerase sigma factor sigW n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5360 Length = 195 Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 50 AMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGM 109 + L + L +Y+ G + +A + G + +RL A ++ + Sbjct: 117 GEAVEQLKGALSELKPLDRQTLEAFYIRGRSLKQIAKEFAVPTGTVKRRLHVARQRLKEV 176 Query: 110 LMALDIRL 117 L +D L Sbjct: 177 LEEIDPTL 184 >UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPC2_HAHCH Length = 118 Score = 39.2 bits (90), Expect = 0.036, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M + +LE+W W+ + + +SS + F L S +S P D +A + +++L Sbjct: 5 MNETPWLLEQWAQWSKMD-ASLGYSS-STPFSRLNGSATRS-PVITDQEAAAVDLAVSKL 61 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKH 88 + + ++ +++ YY+ G + + Sbjct: 62 RTRDEEMGEVVRLYYMAGENLSYVVRRM 89 >UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALN5_DESPS Length = 126 Score = 39.2 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D++AM+I +ARL++ + + + L+ YY+ +A + + + + E Sbjct: 48 SDEEAMLIDTAIARLRQRKASVAEALMVYYLSKENTSYVARELGMDRRKVTQLVSMGESW 107 Query: 106 IEGML 110 + L Sbjct: 108 VAAWL 112 >UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechococcus sp. RS9916 RepID=Q05SP3_9SYNE Length = 248 Score = 39.2 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 2/85 (2%) Query: 18 NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVV 77 + S A G LI C DD +L++ + +Y+ Sbjct: 143 PRSRDRYPSDADGDIPLIQELSDMTVSCDDDQQR--EWLQEQLEQLPQRARSCIERHYLA 200 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKA 102 G + +A + CS I + L+ + Sbjct: 201 GTSAKDIAKEDGCSCSEIRRILRSS 225 >UniRef50_A9AW11 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AW11_HERA2 Length = 203 Score = 38.4 bits (88), Expect = 0.062, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 L++ + +LV +Y + +A C +G I RL A I++ L Sbjct: 131 DVVRQTLERLSPQHRAVLVLHYFHDYSLTEIAEILECPEGTIKSRLFYARKILKEQLYQA 190 Query: 114 DIRLE 118 I E Sbjct: 191 AIEGE 195 >UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N1K7_PHOLL Length = 103 Score = 38.4 bits (88), Expect = 0.070, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M+I + + + +L+ YV ++ ++A KH + +++ + + Sbjct: 1 MLIARVVDHIYHIDRVAFGMLLSRYVYCVSDRAIA-KHYHATVQPRIMIRRNGMLRKRKP 59 Query: 111 MALDIRLEMDIVVNNS 126 R E++ ++ + Sbjct: 60 SMSTCRREVEEILRAT 75 >UniRef50_Q6ANY1 Related to RNA polymerase sigma factor for flagellar operon n=1 Tax=Desulfotalea psychrophila RepID=Q6ANY1_DESPS Length = 242 Score = 38.0 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 +I GC+ARL+ N +LV Y G+ LA + CS ++ QK G ++ L Sbjct: 173 LIQGCLARLE--NPRQRLILVAKYFEGINVKKLADRFGCSRYFVESEEQKGLGQMQTCLE 230 Query: 112 ALD 114 Sbjct: 231 KSG 233 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3W... 162 4e-39 UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=R... 160 1e-38 UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root Re... 156 2e-37 UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root... 156 2e-37 UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus Re... 155 4e-37 UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax... 150 1e-35 UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterob... 149 3e-35 UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax... 148 5e-35 UniRef50_Q7MZ44 Similarities with antitermination protein Q from... 148 6e-35 UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteria... 146 3e-34 UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifo... 145 3e-34 UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteria... 139 2e-32 UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia... 132 3e-30 UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia... 125 5e-28 UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersini... 123 2e-27 UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enteroba... 123 2e-27 UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escher... 121 7e-27 UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9Z... 113 2e-24 UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mi... 110 2e-23 UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acineto... 105 4e-22 UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23... 104 8e-22 UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhab... 104 1e-21 UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseud... 94 1e-18 UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteur... 92 7e-18 UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acineto... 92 8e-18 UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudom... 89 3e-17 UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudom... 89 3e-17 UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinob... 89 4e-17 UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenoph... 89 4e-17 UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemoph... 84 1e-15 UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellacea... 82 4e-15 UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseu... 82 4e-15 UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acineto... 82 6e-15 UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magneto... 79 5e-14 UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannh... 77 2e-13 UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella... 74 1e-12 UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candida... 68 6e-11 UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae Re... 60 3e-08 UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 52 5e-06 Sequences not found previously or not previously below threshold: UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Man... 64 1e-09 UniRef50_B3H0X4 Putative uncharacterized protein n=1 Tax=Actinob... 58 7e-08 UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root Re... 56 3e-07 UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acineto... 56 4e-07 UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella... 55 8e-07 UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelo... 54 1e-06 UniRef50_Q0I4J0 Putative uncharacterized protein n=1 Tax=Haemoph... 53 3e-06 UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfo... 52 7e-06 UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Ta... 50 3e-05 UniRef50_P44192 Uncharacterized protein HI1421 n=9 Tax=Haemophil... 46 3e-04 UniRef50_Q021X5 RNA polymerase, sigma-24 subunit, ECF subfamily ... 46 4e-04 UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax... 46 4e-04 UniRef50_D0S041 Putative uncharacterized protein n=1 Tax=Acineto... 45 8e-04 UniRef50_C4SVI1 ATP-dependent Zn protease n=1 Tax=Yersinia frede... 45 0.001 UniRef50_A3ZZC0 Extracytoplasmic sigma factor ECF-like protein n... 43 0.002 UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobac... 43 0.002 UniRef50_D1BY52 RNA polymerase, sigma-24 subunit, ECF subfamily ... 43 0.003 UniRef50_UPI00016C3CD3 WD-40 repeat protein n=1 Tax=Gemmata obsc... 42 0.005 UniRef50_Q0C1Q3 ECF sigma factor family protein n=1 Tax=Hyphomon... 42 0.006 UniRef50_C8WRE2 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.008 UniRef50_B9TKF6 Putative uncharacterized protein (Fragment) n=1 ... 41 0.010 UniRef50_Q01WD0 RNA polymerase, sigma-24 subunit, ECF subfamily ... 41 0.011 UniRef50_A4JX61 Putative uncharacterized protein n=1 Tax=Burkhol... 41 0.013 UniRef50_B0VKH6 Putative uncharacterized protein n=1 Tax=Acineto... 41 0.013 UniRef50_A6GD49 RNA polymerase sigma-70 factor, ECF subfamily pr... 41 0.014 UniRef50_C1ABY3 Sigma factor, ECF-like family protein n=1 Tax=Ge... 40 0.017 UniRef50_C1A7M9 Sigma factor, ECF-like family protein n=1 Tax=Ge... 40 0.018 UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostri... 40 0.020 UniRef50_A3I0X2 DNA-directed RNA polymerase specialized sigma su... 40 0.023 UniRef50_A2RP52 Putative uncharacterized protein ps612 n=2 Tax=L... 40 0.024 UniRef50_B4WLA9 Response regulator receiver domain protein n=2 T... 40 0.025 UniRef50_UPI0001C37E82 ECF subfamily RNA polymerase sigma-24 fac... 40 0.029 UniRef50_Q01ZV6 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.038 UniRef50_D2LZ92 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.046 UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechoco... 39 0.047 UniRef50_UPI0001744968 hypothetical protein VspiD_19055 n=1 Tax=... 39 0.050 UniRef50_B5JNN4 RNA polymerase sigma factor, TIGR02999 family n=... 39 0.051 UniRef50_A6WBB3 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.056 UniRef50_B1YHB9 RNA polymerase, sigma-24 subunit, ECF subfamily ... 39 0.056 UniRef50_Q3SQV6 IstB-like ATP-binding protein n=3 Tax=cellular o... 39 0.059 UniRef50_B1I489 RNA polymerase sigma factor n=1 Tax=Candidatus D... 38 0.079 UniRef50_B6XKQ8 Putative uncharacterized protein n=1 Tax=Provide... 38 0.081 UniRef50_UPI000178967B RNA polymerase, sigma-24 subunit, ECF sub... 38 0.092 >UniRef50_B3WTB9 Antitermination protein Q n=4 Tax=root RepID=B3WTB9_ECOLX Length = 140 Score = 162 bits (410), Expect = 4e-39, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 74/126 (58%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLERWG WAA+ V + +AAGFK L+ + R +C D+D +II M+ L Sbjct: 1 MRNIQQVLERWGGWAASEGGSVYFPPVAAGFKNLLPATQSGRLKCSDNDGLIINSAMSCL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KK + L LL +YV M ++ K S ++ KRLQ AEG I+G L LD+ LEMD Sbjct: 61 KKKDPYLCTLLEWHYVQAMPVRAMGEKLGVSHTHVLKRLQAAEGFIDGCLAMLDVVLEMD 120 Query: 121 IVVNNS 126 V + Sbjct: 121 QSVQSK 126 >UniRef50_P68922 Antitermination protein Q n=138 Tax=root RepID=REGQ_BP933 Length = 144 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 98/126 (77%), Positives = 107/126 (84%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+ VLERWGAWAANN+EDVTWS IAAGFKGLI KVKSRPQCCDDDAM+ICGC+ARL Sbjct: 1 MRDIRQVLERWGAWAANNYEDVTWSPIAAGFKGLIPEKVKSRPQCCDDDAMVICGCIARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 +NN DLHDLLVDYYV+G TFM+LA KH CSD IGKRL KAEGI+EGMLM L +RLEMD Sbjct: 61 YRNNRDLHDLLVDYYVLGETFMALARKHGCSDTCIGKRLHKAEGIVEGMLMMLGVRLEMD 120 Query: 121 IVVNNS 126 V Sbjct: 121 RYVERE 126 >UniRef50_A4TNH3 Phage antitermination protein Q n=53 Tax=root RepID=A4TNH3_YERPP Length = 159 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 1/125 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VL RWG WA + +SSIAAGFKGL+ KS+ CCDDD +++ GC+ARL Sbjct: 19 MRDIQLVLARWGVWAR-YSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARL 77 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K+ + ++L++ +YV+ + ++A + + I +Q AEG I+G L L+++L MD Sbjct: 78 KQCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMD 137 Query: 121 IVVNN 125 + N Sbjct: 138 PFIEN 142 >UniRef50_Q9T1U3 Probable antitermination protein Q n=10 Tax=root RepID=REGQ_BPAPS Length = 148 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 1/124 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ VLERWG WA +N+ + WS IAAGFKGL+ + RP C D+D II C+++L+ Sbjct: 3 RDIQQVLERWGTWARDNNTGIDWSPIAAGFKGLLPLRPSMRPSCSDEDGRIIDNCVSQLQ 62 Query: 62 KNN-SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + L++ YYV G + ++A + +G I +L AEG I+G L L +RL+MD Sbjct: 63 QVRQPEELSLIIAYYVKGYSKRAIARRRRVDEGLIRAKLLIAEGFIDGCLSLLAVRLDMD 122 Query: 121 IVVN 124 V Sbjct: 123 PEVK 126 >UniRef50_B4EVI6 Phage antitermination Protein n=5 Tax=Proteus RepID=B4EVI6_PROMH Length = 132 Score = 155 bits (392), Expect = 4e-37, Method: Composition-based stats. Identities = 61/127 (48%), Positives = 79/127 (62%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+Q VL RWGAW+AN + +SSIAAGFKGLI S +SR QC DDD + I + L Sbjct: 1 MRDMQEVLSRWGAWSANEGNSIDYSSIAAGFKGLIPSSRRSREQCSDDDGLKINKAVLHL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K NNS L L++ YYV S+A K S + KRLQ AEG IEG L +++L+MD Sbjct: 61 KVNNSYLFQLVIMYYVKNYPLRSMASKLGISHNEVAKRLQTAEGFIEGCLSVDNVKLDMD 120 Query: 121 IVVNNSN 127 ++ + Sbjct: 121 KIIRKHS 127 >UniRef50_Q7N2N8 Similar to the antitermination protein Q n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N2N8_PHOLL Length = 139 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 2/126 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+IQ VLE WG W ++ V W IAAGFKGLI S RP CCD+D +II C+A+L Sbjct: 1 MRNIQQVLECWGGWV-DDATGVNWPPIAAGFKGLIASTRSLRPSCCDNDGLIIDACIAKL 59 Query: 61 KKNNS-DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + + ++L YY + ++ S+A D + RLQK E ++G L LDI+LEM Sbjct: 60 QTVDKSEEIEVLFMYYALRLSKRSIARLIKVPDIEVRSRLQKGESFVQGCLAMLDIKLEM 119 Query: 120 DIVVNN 125 D + Sbjct: 120 DDEIQK 125 >UniRef50_B6XBF3 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBF3_9ENTR Length = 131 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLERWG WAA V +SS AAGF GL + R CCDDD + I + +L Sbjct: 1 MRDIQLVLERWGGWAAEGKSKVGYSSTAAGFSGLFPESERVRLSCCDDDGIAIDAAIGKL 60 Query: 61 KKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 D DL+ +Y+ ++ ++A + CS+G I ++L AE I+ L+ ++ LEM Sbjct: 61 ISVGRKDEFDLIDKHYIRDISKSAIAREMKCSEGKIRQKLMIAETFIDACLIMANVTLEM 120 Query: 120 DIVVNNSN 127 D ++ Sbjct: 121 DEWCKKTS 128 >UniRef50_B2VDR7 Antitermination protein Q, phage protein n=1 Tax=Erwinia tasmaniensis RepID=B2VDR7_ERWT9 Length = 123 Score = 148 bits (374), Expect = 5e-35, Method: Composition-based stats. Identities = 53/122 (43%), Positives = 82/122 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDI+++L RWG WAA + ++ +A+GF+GLIT SR QC DDD +II C++RL Sbjct: 1 MRDIKLLLRRWGGWAALGERRLGYAPVASGFRGLITHHASSRLQCSDDDGIIIDSCISRL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 K + + HD+LV +Y+ ++ S+A + C+DG I +++Q AEG I G+L AL+ LE + Sbjct: 61 AKVSKEQHDILVAHYLYQISLRSIARRRRCADGSIRRKIQTAEGFICGVLTALESELECE 120 Query: 121 IV 122 + Sbjct: 121 NL 122 >UniRef50_Q7MZ44 Similarities with antitermination protein Q from lamdoid prophage n=2 Tax=Enterobacteriaceae RepID=Q7MZ44_PHOLL Length = 143 Score = 148 bits (373), Expect = 6e-35, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 1/123 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDIQ +L WG W + + WSS+ AGFKGL++ ++ CCD+D +II GC+A+L+ Sbjct: 3 RDIQKILLHWGGWVVHGRSGLGWSSVTAGFKGLVSRTSITKLSCCDEDGLIIDGCIAKLR 62 Query: 62 KNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + D + +Y GM+ S+ K+ ++ + KR+ AE I G L A D LE+D Sbjct: 63 NVQMEQECDFIECHYAKGMSKRSIGRKYKLNESEVRKRMAIAESFILGCLTASDETLELD 122 Query: 121 IVV 123 ++ Sbjct: 123 LLY 125 >UniRef50_D1NX77 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=D1NX77_9ENTR Length = 156 Score = 146 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 79/124 (63%), Gaps = 2/124 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRDIQ+VLE+W WA +N+ V +S IAAGFKGLI++K R C D+D +II +A+L Sbjct: 12 MRDIQLVLEKWAGWA-SNNPGVDYSHIAAGFKGLISNKEAPRLSCTDNDGIIIDSVIAKL 70 Query: 61 KKNNSDL-HDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K D +L+V +Y+ G++ +A K S+G + + +Q AEG ++G L + + LEM Sbjct: 71 KAVRKDEELELIVMHYLYGVSKRGIAKKLKVSEGRVRQMMQVAEGFVDGCLAMIGVVLEM 130 Query: 120 DIVV 123 D V Sbjct: 131 DSEV 134 >UniRef50_D2TCJ1 Antitermination protein Q n=2 Tax=Erwinia pyrifoliae RepID=D2TCJ1_ERWPY Length = 140 Score = 145 bits (367), Expect = 3e-34, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 83/121 (68%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MR+I+++L+RWGAWA++ + ++S+A+GF+GLIT +R QC D D +I+ C++RL Sbjct: 19 MRNIKLLLQRWGAWASSGERRLGYASVASGFRGLITHHGGNRLQCSDGDGIILDSCISRL 78 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 + + HD+LV +Y+ ++ S+A + C+DG I K+LQ AEG + G+L AL+ LE + Sbjct: 79 AMESKEQHDILVAHYLYLISLRSIARRRRCADGTIRKKLQTAEGFVCGVLTALECELECE 138 Query: 121 I 121 Sbjct: 139 N 139 >UniRef50_B5XSK3 Antitermination protein Q n=2 Tax=Enterobacteriaceae RepID=B5XSK3_KLEP3 Length = 114 Score = 139 bits (351), Expect = 2e-32, Method: Composition-based stats. Identities = 48/114 (42%), Positives = 77/114 (67%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 MRD+ +++RWGAWAA+++ V W IAAGFK L+ K+R QC DD+ ++I GC+ARL Sbjct: 1 MRDMYEIMDRWGAWAASDNSGVDWQPIAAGFKDLLPHGKKTRQQCDDDEGIMIDGCVARL 60 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++L++ ++V+GM+ ++A K CSDG I L+ A G +EG+L + Sbjct: 61 RMCKPEEYELIIAHFVIGMSLRAIAKKRRCSDGKIRGELRSAMGFVEGVLCIIH 114 >UniRef50_C4SH18 Phage antitermination protein Q n=2 Tax=Yersinia RepID=C4SH18_YERMO Length = 124 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M DIQ VL RWG WA +N + + IA+GF+G ITS K C D+D + I + L Sbjct: 1 MADIQTVLTRWGVWARDN-AHLDYPHIASGFRG-ITSGGKQLESCSDNDGLAIDTTVGYL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 K+ + DL++ +YV G + S+A C++ I ++LQ AE I+G I LEM Sbjct: 59 KRAAREKELDLIIRHYVYGQSKASIARLKKCNEREIRRQLQIAESFIDGCFTQSHITLEM 118 Query: 120 DI 121 Sbjct: 119 HK 120 >UniRef50_C4T548 Phage antitermination protein Q n=5 Tax=Yersinia RepID=C4T548_YERIN Length = 121 Score = 125 bits (313), Expect = 5e-28, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M +IQ VL RWG WA N + + IA GFKG++ + K CCD+D ++I + L Sbjct: 1 MSNIQTVLARWGVWAREN-IHLDYPHIANGFKGMVM-RNKPAESCCDNDGLVIDKTIGNL 58 Query: 61 KKNNSD-LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 ++ + + +L++ +YV G + S+A C++ I ++LQ AE IEG ++ D LEM Sbjct: 59 QRASREKELELILRHYVYGQSKASIARLKKCNEREIRRQLQLAESFIEGGIVQSDAALEM 118 Query: 120 DIV 122 + Sbjct: 119 HME 121 >UniRef50_B1JRS6 Putative uncharacterized protein n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JRS6_YERPY Length = 141 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 2 RDIQMVLERWGAWAANNH--EDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R++Q+V ERWG WAA+ V W +++ + L + +P C D+D + + C+A Sbjct: 3 RNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQLP--QASGKPSCTDEDGLTLDTCIAH 60 Query: 60 LKKNNSDLHDLLV-DYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLE 118 + L++ Y+ G + +A + + LQ +E + G L+ L IRLE Sbjct: 61 MSTVFPQASLLILGQRYIGGHSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLE 120 Query: 119 MDIVV 123 MD V Sbjct: 121 MDPEV 125 >UniRef50_D2U0V3 Phage transcriptional regulator n=5 Tax=Enterobacteriaceae RepID=D2U0V3_9ENTR Length = 142 Score = 123 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 2 RDIQMVLERWGAW-AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RDI+ +L WG W A N + V+W +A+GF + SR C D D ++I C++RL Sbjct: 3 RDIEKILLHWGGWCAGNPYASVSWLPVASGFNRFMPFST-SRLSCSDADGLVIDVCVSRL 61 Query: 61 KKN-NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 + + DYY+ G++ ++A K + + KR+Q AEG + G L LDI+L++ Sbjct: 62 NTVGMARELSYIEDYYIRGISKRAIARKFAVREDEVRKRMQIAEGFVLGCLETLDIQLDI 121 Query: 120 DIVVN 124 D + Sbjct: 122 DTLYK 126 >UniRef50_B7UQG2 Predicted antitermination protein n=2 Tax=Escherichia coli RepID=B7UQG2_ECO27 Length = 117 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 64/110 (58%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI +L+ WGAW + + W IA +K ++ KSR QC +D+ II + RL++ Sbjct: 6 DICEILDDWGAWVVAGNSSIDWQEIADKYKNVVPHGKKSRRQCSNDEGRIIDISILRLER 65 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 ++L+V ++V+G++ ++A + CSDG I KRLQKA G + G + Sbjct: 66 YKQQEYELIVAHFVIGLSLRAIAKQQGCSDGTIRKRLQKALGFLTGYIAI 115 >UniRef50_A9ZMR7 Antiterminator Q protein n=41 Tax=root RepID=A9ZMR7_ECOLX Length = 162 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 7 VLERWGAWAANNHEDVTWSSIAAGFKGLI-TSKVKSRPQCCDDDAMIICGCMARLKKNNS 65 LE WGAW + + SS+ A F + +V +RP C DDD M+I + + + Sbjct: 19 WLELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDK 78 Query: 66 DLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNN 125 +L+ YY G + ++A + S K L + G I+ R E+D ++N Sbjct: 79 KAFGILLSYYAHGSSKHAIAS-YYHSVARPRKMLCRGGGRIQK-PSLATCRREVDEILNA 136 Query: 126 S 126 S Sbjct: 137 S 137 >UniRef50_C2LFC9 Phage antitermination protein n=2 Tax=Proteus mirabilis RepID=C2LFC9_PROMI Length = 127 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 2/126 (1%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M+ I ++E WG+W NN+ + +++ + + +VK R C D +I+ CM++L Sbjct: 1 MQKISKLMEAWGSWVVNNN--LYINTLTINKRENVPIRVKLRKACTDRQGIIVSVCMSKL 58 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMD 120 KN+ ++LLVDYYV G TF+ LA H CSD YIGK+L+KAEGI+EGML+ ++ ++ Sbjct: 59 LKNHKKDYELLVDYYVFGQTFIQLAQAHRCSDTYIGKKLKKAEGIVEGMLIMAELIFIIE 118 Query: 121 IVVNNS 126 N++ Sbjct: 119 KNENST 124 >UniRef50_D0S8S0 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0S8S0_ACIJO Length = 136 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQCC-DDDAMI-ICGC 56 R +Q L +WG WA + N ++T++S G L + S Q DDDA++ I Sbjct: 12 RMMQNELAQWGKWARHASYNPSELTYTSPTYGLMRLKEGQKSSGIQVMLDDDALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + +L+ + DL+ + +Y+ G LA K I K L AE ++ L L + Sbjct: 72 VTQLRFSRPDLYQWIEFHYLKGYPIAVLASKTKVDRRNIDKFLLAAETWLDSRLDFLLCQ 131 Query: 117 LEMD 120 L+ D Sbjct: 132 LKKD 135 >UniRef50_D1P374 Bacteriophage ST64T antitermination protein gp23 n=4 Tax=Enterobacteriaceae RepID=D1P374_9ENTR Length = 176 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKS-RPQCCDDDAMIICGCMARLKK 62 +Q L R+GAW + + SS+ A F + + RP C DDD ++I + ++ Sbjct: 21 LQNWLARFGAWVYSGRLEKRQSSMIAEFMATVERRSYPDRPTCSDDDGLLIHDVVDQIYH 80 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 ++ +L+ YV + ++A + + ++ + + R E++++ Sbjct: 81 LDTIAFKMLLSRYVYCASDRAIASSYYEN-CEPRIMPRRNGLLRKRKPSISTCRREVEVI 139 Query: 123 VNNS 126 + ++ Sbjct: 140 LKST 143 >UniRef50_C7BH46 Phage antiterminator q protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BH46_PHOAA Length = 174 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFK-GLITSKVKSRPQCCDDDAMIICGCMARLKK 62 I L WGAW + ++ F + S K+R C DDD M+I + + Sbjct: 28 IDSWLSLWGAWVYSGRIGKCQINMIYKFMVSVKPSNNKTRQMCNDDDGMLISRVVDSVMF 87 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIV 122 + + +L+ YY G + +S+A + K + ++ G ++ R E+D + Sbjct: 88 IDKKAYGILLSYYAHGASKLSIAS-YYHRVANPRKMMTRSGGRLKK-PSRGTCRREVDEI 145 Query: 123 VNNSN 127 +N S Sbjct: 146 LNAST 150 >UniRef50_B5WZY8 Putative antitermination protein Q n=1 Tax=Pseudomonas phage PAJU2 RepID=B5WZY8_BPPAJ Length = 124 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 1/114 (0%) Query: 2 RDIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 RD + +L +WG W S + A + + + DDDAM+I G +AR+ Sbjct: 3 RDAEELLTQWGKWVWQETGVPRCGSPMLAIMRDNVAMEQCLSASISDDDAMLIDGIIARM 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 + + ++ + + YY MT + + + + L +E +L + Sbjct: 63 GRRDEEMANCVRVYYATEMTMQQVGKLLNLNRLKVRELLIAGRCYVEAVLDMRE 116 >UniRef50_B0QXB5 Putative uncharacterized protein n=2 Tax=Pasteurellaceae RepID=B0QXB5_HAEPR Length = 121 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR-PQCCDDDAM-IICGCMARL 60 D++ VL WG + + ++ + + + K R DDD + + + L Sbjct: 4 DVKRVLMLWGGYVRFTDC-KGYPTMQSFMRESPEMRTKRRYLARLDDDTLEKVDIQIRYL 62 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 +++ DLL YV G + K S G L+ AE +EG L+ I L Sbjct: 63 EQHFPKQFDLLFFRYVCGYEPNQVWRKLSLSKGSYENELRLAERFVEGALVGSQISL 119 >UniRef50_B7GXQ5 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AB307-0294 RepID=B7GXQ5_ACIB3 Length = 132 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 2 RDIQMVLERWGAWAAN---NHEDVTWSSIAAGFKGLITSKVKSRPQCC-DDDAMI-ICGC 56 R +Q L +WG WA N N ++ + S + G L Q +D+A++ I Sbjct: 12 RMMQNELAQWGKWARNASFNPSELIYKSPSLGLMRLKEGFKSKGIQVTLNDEALVAIDHL 71 Query: 57 MARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + +LK + DL+ + +Y+ G LA I K L AE ++ L Sbjct: 72 VMQLKLSRPDLYQWIEFHYLKGYPVAVLATHTKVDRRNIDKYLLAAETWLDSRL 125 >UniRef50_B1J5L6 Putative uncharacterized protein n=6 Tax=Pseudomonas RepID=B1J5L6_PSEPW Length = 129 Score = 89.2 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTW-SSIAAGFKGLITSKVKSRPQ-CCDDDAMIICGCMARL 60 D + +LE+WG W + + S + A + + S+ +R DD A+II G +ARL Sbjct: 13 DTEYMLEQWGWWRMSEMGVPRYVSPLYALMRDNVPSEGGARQHVITDDLALIIDGAVARL 72 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 K N + D + YY M + + S+ + ++ I+ Sbjct: 73 TKRNQQMGDFVWAYYGSKHPAMRVGREAGMSERKAREIIKAGVAWID 119 >UniRef50_B7V4N4 Putative uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=B7V4N4_PSEA8 Length = 124 Score = 89.2 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 4 IQMVLERWGAWAAN-NHEDVTWSSIAAGFKGLITSKVK---SRPQCCDDDAMIICGCMAR 59 ++ ++E++G W + N S + A K ++ + P DD A+ + +AR Sbjct: 6 LEFLMEQYGLWVWSDNGTPRGSSPMLALMKRNPANEKRFAAVAPCISDDRALQVDRFLAR 65 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 L + D L+ Y++ GM++ + + S ++ + + + Sbjct: 66 LYDEDPDAIRSLILYFIHGMSYRDIQDRMGISYADARMLVRAGLSALLACFVMEE 120 >UniRef50_A6VNN9 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNN9_ACTSZ Length = 116 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 2/107 (1%) Query: 10 RWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHD 69 R+G W N+ + + G KG +K P DD+ M+I + +K+ N D Sbjct: 9 RFGYW-GNSRLETDYPVATVGIKGADRTKPYLDP-LSDDEGMLIDKGLLLMKQINFDQFH 66 Query: 70 LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + YV + S + L +AE + G L+ ++ Sbjct: 67 VFMLTYVKRYDRADICHFKNISLKHYYNLLHEAESFLIGYLLRGEVV 113 >UniRef50_D2TX54 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2TX54_9ENTR Length = 115 Score = 88.9 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 8/109 (7%) Query: 2 RDIQMVLERWGAWAAN--NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR 59 R ++ +LE WG W+ + E SSIA RP D++ I+ +A Sbjct: 3 RHVKDLLEAWGNWSMSRIGTEYKGMSSIA------PVKFDDDRPWLSDEEGEIVDKAVAG 56 Query: 60 LKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 LK+ + D ++++ +Y ++ +A YI + +AE I G Sbjct: 57 LKRYDIDGYNIICLHYQHHISCRMIAKNWKKRPDYITAYMGRAESYIAG 105 >UniRef50_Q4QKY2 Putative uncharacterized protein n=6 Tax=Haemophilus influenzae RepID=Q4QKY2_HAEI8 Length = 121 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 3/100 (3%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 DI++ R+G WA + + +I + P D+ AM I ++ Sbjct: 8 DIKLTARRYGKWAREG-VGINYPAIQPFLRKSTPDHGI--PMLDDETAMRIHDATLIMRN 64 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 +L+ + + YV ++ + + S I L A Sbjct: 65 VTPELYQVFMLRYVSNLSQGDVGREMRVSVPTIKSYLYAA 104 >UniRef50_C6AM41 Antitermination Q protein n=4 Tax=Pasteurellaceae RepID=C6AM41_AGGAN Length = 168 Score = 82.3 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 4/116 (3%) Query: 11 WGAWAANNHEDV-TWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMAR-LKKNNSDLH 68 WGAW D ++ IA K +I + S P C D+ M+I + + KN+ LH Sbjct: 24 WGAWIRLGRLDKPEFNIIAKLMKSVIPADP-SEPVCSDEVGMMISELIEQFFFKNDRTLH 82 Query: 69 DLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVN 124 ++ YYV T +A K + G + + + I + ++ ++ + Sbjct: 83 YIVFSYYVNKNTINRIAVKLRENCGEMKMQPCAGKSDI-RIPSLKTVKRNVEKELK 137 >UniRef50_Q88ML3 Antitermination protein Q, putative n=1 Tax=Pseudomonas putida KT2440 RepID=Q88ML3_PSEPK Length = 113 Score = 82.3 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 17/123 (13%) Query: 1 MRDIQM----VLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGC 56 M +++ +LE WG W +S P DDDA+ I Sbjct: 1 MSNVEKSAEYLLEHWGRWVVLGSGVSCCAS---------RENTILDPMITDDDALFIDRL 51 Query: 57 MARLKKNNSDLHDLLVDYYV-VGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 + RL K + +++ YY + + K + + + I+G A+DI Sbjct: 52 VGRLSKRYPECGQVIIKYYTSRDTSLRDVGKKLGFGEEKTRQLWKAGVAWIDG---AIDI 108 Query: 116 RLE 118 R E Sbjct: 109 RRE 111 >UniRef50_A7FBC6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A7FBC6_ACIBT Length = 166 Score = 81.9 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query: 4 IQMVLERWGAWAANNHEDVTWSS------IAAGFKGLITS-KVKSRPQC--CDDDAMIIC 54 I+ LE++GAW ++ + + + +G+ + +S PQC D+A + Sbjct: 19 IENWLEQFGAWINEDNAETYLGTRNTLTYLIDSVEGVKRDARKRSLPQCKISTDEARAVS 78 Query: 55 GCMARLKKNN----SDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 G + L+ N + D +V YYV G++ ++A CS + + L+ I G Sbjct: 79 GLLRDLRMNPNPTLQEWLDFVVLYYVHGLSEETIADISKCSRNAVRQDLKCGIAYIVGQR 138 Query: 111 MALDIRL 117 L +L Sbjct: 139 NTLRSKL 145 >UniRef50_A0L8A2 Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8A2_MAGSM Length = 144 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 2/105 (1%) Query: 6 MVLERWGAWAANNHEDVTWSSIAAGFKGLITSK--VKSRPQCCDDDAMIICGCMARLKKN 63 +L+ W W+ + + + + + ++++ ++++ K Sbjct: 17 ELLQEWARWSRSGMSSQNPITSTQLLMRRAAGHVGRSLKYENSEQQSLLVDCVISKMAKI 76 Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 LL ++Y+ +A + S G + +AEG+ EG Sbjct: 77 FPHEVTLLQEFYLGKKGMRIIARERVFSYGKVQTLRSRAEGLFEG 121 >UniRef50_A7JW96 Hypothetical bacteriophage protein n=2 Tax=Mannheimia haemolytica RepID=A7JW96_PASHA Length = 157 Score = 76.5 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 2/114 (1%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVK--SRPQCCDDDAMIICGCMARLK 61 I+ +L WGAW + + ++ SR C D +I + Sbjct: 19 IEELLRLWGAWEFGGLDLESRVNMIYRLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVT 78 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDI 115 K + L D+L Y G + +A + D K + E I + A I Sbjct: 79 KRDVMLADILKQKYWFGRSERQIAIYYQLRDSEGRKERRWQEIIQDKCKKAERI 132 >UniRef50_Q2SI66 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SI66_HAHCH Length = 128 Score = 74.2 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 9/108 (8%) Query: 5 QMVLERWGAWAANNHEDVTWSSIAAGFKGLIT--SKVKSRPQCCDDDAMIICGCMARLKK 62 + L R+G W + F+ + T DD A+I+ +A L + Sbjct: 11 RDWLVRYGRWVRAGG-------VLPRFERVETCLDDYDGSELLTDDQALIVDKALALLSR 63 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + Y+ +A S G + L+ E I+ G+L Sbjct: 64 VQPFEGKAIKWAYIDRREIRVIARDLGRSYGAARELLRMGECIMSGLL 111 >UniRef50_C4K4W3 Putative uncharacterized protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W3_HAMD5 Length = 92 Score = 68.4 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 44 QCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 D++A I+ +ARLK +S +D++V Y ++ ++ I L ++E Sbjct: 1 MLPDNEAQIVDRAVARLKHFDSLGYDIIVACYRGKVSCRAIGRALKRDHKSISGYLTRSE 60 Query: 104 GIIEGMLMAL 113 I G + AL Sbjct: 61 AYIAGQVDAL 70 >UniRef50_UPI0001BCFD6E hypothetical protein COK_0844 n=2 Tax=Mannheimia haemolytica serotype A2 RepID=UPI0001BCFD6E Length = 146 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 28/142 (19%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSR--PQCCDDDAMIICGCMARL 60 DI+ VL WG++ + ++ A + + K R P+ DD + + +L Sbjct: 4 DIKGVLNLWGSFVRFTDC-KGYPTMQAFMRESPQEREKQRYLPRLDDDTLAKVDRQIRKL 62 Query: 61 -------------------------KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 +++ +L YV G+ + K S G Sbjct: 63 DPAGKAKAYLANLAKPNDKREELESLESDELQFAILYLRYVAGLENKPIWQKLSLSKGAF 122 Query: 96 GKRLQKAEGIIEGMLMALDIRL 117 L+ AE +EG+L+ +IRL Sbjct: 123 ENELRLAERFVEGVLIGSEIRL 144 >UniRef50_B7UQ12 Predicted protein n=61 Tax=Enterobacteriaceae RepID=B7UQ12_ECO27 Length = 180 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 41/144 (28%) Query: 4 IQMVLERWGAWAANN------------------------------HEDVTWSSIAAGFKG 33 IQ L WG W+ + + A + Sbjct: 24 IQGKLRMWGRWSYIGGGKPGNMFNQLLASKKLTKTAVNEALRRIRESGIDKPELEAFLRE 83 Query: 34 LITSKVKSRPQ-CCDDDAMIICGCMARLKKNNSDLHDLLVDYYV-VGMTFMSLAGKHCCS 91 +I + KS C D +A+ I G +++ L D+L Y GM+ +A Sbjct: 84 MIAGRQKSWLSHCTDAEALRIDGVISKALARYPGLIDILRQRYEGRGMSKRKMAELLNEV 143 Query: 92 DGY---------IGKRLQKAEGII 106 I L+ AE I+ Sbjct: 144 HPEWCYATCRNRIDMWLRIAEFIL 167 >UniRef50_B3H0X4 Putative uncharacterized protein n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H0X4_ACTP7 Length = 161 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 6/105 (5%) Query: 5 QMVLERWGAWAANNHEDVTWSSIAAGFKGLIT--SKVKSRPQCCDDDAMIICGCMARLKK 62 + V + +GAW + + ++ F + K+ RP C D M+I + K Sbjct: 20 EEVFKMYGAWEFSGLDRDKRVNMIYKFMRSVEAIDKLGMRPVCNDQLGMLINEILTVRTK 79 Query: 63 NNSD----LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + + D Y G + +A D + E Sbjct: 80 HAKGDTVLMRDFFKQKYWFGRSERQIAMYMQKRDDEGKCLRRWQE 124 >UniRef50_A5UER2 Putative uncharacterized protein n=6 Tax=root RepID=A5UER2_HAEIG Length = 122 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 2/114 (1%) Query: 4 IQMVLERWGA-WAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKK 62 ++ VLE+WG W + + S L T + DD+ + I + L + Sbjct: 5 VERVLEKWGNCWGRD-RIGTEYPSTTISIPVLPTVRKAHIRFLTDDECLKIEEQIMNLHE 63 Query: 63 NNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 ++ + +L+ YV + S + + K ++G I+ Sbjct: 64 DSLLQYQILMALYVQQANERDICTALHISPACMYRERAKGVRFLKGAFTGAKIK 117 >UniRef50_B0VTT6 Putative uncharacterized protein n=3 Tax=Acinetobacter baumannii RepID=B0VTT6_ACIBS Length = 145 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 9/117 (7%) Query: 6 MVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRP-----QCCDDDAMIICGCMARL 60 LE++G W + V+ + +A T++++S + D +A+ + +A + Sbjct: 19 QWLEQYGLWVRSTKSKVSANPLACLIDQNDTTRIRSSKVSMPCEIEDYEAVEVSKLLAAM 78 Query: 61 KKNNSDLHD----LLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + + LL+ Y ++ ++A H + K + K ++G + AL Sbjct: 79 HNDEREFLQERAWLLILKYENDWSYRTIANTHGVGKDTVRKEIDKGLAYLDGKIEAL 135 >UniRef50_Q2SPC2 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPC2_HAHCH Length = 118 Score = 55.0 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 43/111 (38%), Gaps = 4/111 (3%) Query: 1 MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 M + +LE+W W+ + + +SS + + P D +A + +++L Sbjct: 5 MNETPWLLEQWAQWSKMD-ASLGYSSSTPFSR--LNGSATRSPVITDQEAAAVDLAVSKL 61 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKH-CCSDGYIGKRLQKAEGIIEGML 110 + + ++ +++ YY+ G + + ++ I+ L Sbjct: 62 RTRDEEMGEVVRLYYMAGENLSYVVRRMPKLDRRKADLLVKSGVAWIDATL 112 >UniRef50_A5EUW5 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW5_DICNV Length = 118 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 4 IQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKN 63 I+ +L WG W+ + A F + D+ I + L+ N Sbjct: 3 IEELLVAWGEWSRKDVLPARPRCFIAAFCRRSARDADDSVELDDEACEQINEGLMVLRGN 62 Query: 64 NSDLHDLLVDYYVVG-MTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 + +HD+L+ Y+ ++A +H S+ + ++ +EG L Sbjct: 63 HQRIHDVLISRYLYNEYNDKAVAKRHGISESTVKDYRRRGHLFLEGWLC 111 >UniRef50_Q0I4J0 Putative uncharacterized protein n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4J0_HAES1 Length = 134 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 17/127 (13%) Query: 3 DIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQ--CCDDDAMIICGCMARL 60 D + +WG WA + SI+ + +D AM C+ + Sbjct: 7 DFKKKCRQWGYWA-TPRIGTEYPSISPSIP--VPQDKYCGKVDPINEDLAMEFERCVLIM 63 Query: 61 KKNNSDLHDLLVDYYVVGMTFMS------------LAGKHCCSDGYIGKRLQKAEGIIEG 108 +K +L+D+ + YV + + + S+ K L AE ++ Sbjct: 64 QKVTRELYDVFMVTYVYRLPLRNEYDRRRILVRKGICETLDISETTYKKYLYTAEISLKL 123 Query: 109 MLMALDI 115 ML Sbjct: 124 MLSQNRC 130 >UniRef50_Q0ATZ3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0ATZ3_SYNWW Length = 206 Score = 52.3 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 48 DDAMIICGCMARLK------KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 +D +++ + L+ K + D+++ YY + S+A + I + Q+ Sbjct: 129 EDKLLLSSYIPALQEAVLAAKIKPEEWDIIIAYYAYNESDRSIAVRLKKPINTIKSKRQR 188 Query: 102 AEGIIEG 108 A ++ Sbjct: 189 AMARLQK 195 >UniRef50_Q6ALN5 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALN5_DESPS Length = 126 Score = 51.9 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%) Query: 44 QCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAE 103 + D++AM+I +ARL++ + + + L+ YY+ +A + + + + E Sbjct: 46 EISDEEAMLIDTAIARLRQRKASVAEALMVYYLSKENTSYVARELGMDRRKVTQLVSMGE 105 Query: 104 GIIEGML 110 + L Sbjct: 106 SWVAAWL 112 >UniRef50_Q7N1K7 Similarities with bacteriophage Q protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N1K7_PHOLL Length = 103 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 M+I + + + +L+ YV ++ ++A KH + +++ + + Sbjct: 1 MLIARVVDHIYHIDRVAFGMLLSRYVYCVSDRAIA-KHYHATVQPRIMIRRNGMLRKRKP 59 Query: 111 MALDIRLEMDIVVNNS 126 R E++ ++ + Sbjct: 60 SMSTCRREVEEILRAT 75 >UniRef50_P44192 Uncharacterized protein HI1421 n=9 Tax=Haemophilus influenzae RepID=Y1421_HAEIN Length = 92 Score = 46.5 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 36 TSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 K + RP D+ M I G + ++K +L+D+ V Y+ + S Sbjct: 8 AEKYRMRP-ISDELGMEIDGYLGVIRKVTPELYDVFVLTYIKRWEKQGIWRYLHISRREY 66 Query: 96 GKRLQ 100 RL+ Sbjct: 67 FNRLK 71 >UniRef50_Q021X5 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021X5_SOLUE Length = 196 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 5/100 (5%) Query: 18 NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVV 77 S+IA + P D + + + RL + + ++ +Y Sbjct: 98 GAAKRGGSAIAVTLDETVVPSSGRGP-----DVLELDEALDRLAQRDERKAKVIELHYFG 152 Query: 78 GMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRL 117 GMT +AG + + + L+ E + L D Sbjct: 153 GMTREEIAGAMNLTVATVKRDLRLGEAWLRCHLSGGDSGR 192 >UniRef50_UPI000045D91D hypothetical protein Aple02001610 n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI000045D91D Length = 125 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Query: 3 DIQMVLERWGAWAANNHEDVTWS-SIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 DI L RWG A + + A+ + K DDD + + G LK Sbjct: 5 DIDATLFRWGRHAKS-RIGTEFPCKCASWVADSQSKKHYHIDLTTDDDLIEMDGITKNLK 63 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIR 116 + + + +L+ YV+ L S + + L A+ + G ++A ++ Sbjct: 64 QYDEQAYYVLLGNYVMRYDEKQLVKDLDISKTTLYRSLTIAKSFVFGAVIAKNLS 118 >UniRef50_D0S041 Putative uncharacterized protein n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S041_ACICA Length = 170 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 4/88 (4%) Query: 24 WSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNN----SDLHDLLVDYYVVGM 79 + S L T + + Q D++A I + L+ + + + +YV+G Sbjct: 61 YMSDENLKDRLCTRRKGTCCQLNDNEARAIHRLILDLQSIDDEVLQEWIGAIWWHYVMGE 120 Query: 80 TFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +A I + ++ I+ Sbjct: 121 SIRDIAKSSDTYGSQIQQDIKCGLAFIK 148 >UniRef50_C4SVI1 ATP-dependent Zn protease n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SVI1_YERFR Length = 160 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 15/79 (18%) Query: 45 CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 C DD+ +++ + + ++ L +L +Y+ ++A + + Sbjct: 68 CTDDEGLLMDSVVGLVLQSTPGLIGILQQHYIYKKKRYTMAEEMQEAHPE---------- 117 Query: 105 IIEGMLMALDIRLEMDIVV 123 L R +D + Sbjct: 118 -----LSISTCRRRIDAWI 131 >UniRef50_A3ZZC0 Extracytoplasmic sigma factor ECF-like protein n=6 Tax=Planctomycetaceae RepID=A3ZZC0_9PLAN Length = 189 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 10/93 (10%) Query: 32 KGLITSKVKSRPQCCDDDAMI----------ICGCMARLKKNNSDLHDLLVDYYVVGMTF 81 K L + R + DDDA+I + +++L +L L+ Y G++ Sbjct: 95 KSLKRGGDRDRYEILDDDAVIDSQNVDELLDLDAALSKLANEEPELAKLVELRYFAGLSV 154 Query: 82 MSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 A S + + A + L + Sbjct: 155 DQSAQVLGVSPRTVKRNWAFARAWLGRELHLEE 187 >UniRef50_A5TWC9 Putative uncharacterized protein n=1 Tax=Fusobacterium nucleatum subsp. polymorphum ATCC 10953 RepID=A5TWC9_FUSNP Length = 150 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGK 97 ++ + LK + ++++ YY+ GM +A K + + K Sbjct: 82 LVDSGIGYLKDCHFKHYEIIELYYIKGMKLKQIASKLGINPATVSK 127 >UniRef50_D1BY52 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BY52_XYLCX Length = 172 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 9/113 (7%) Query: 13 AWAAN------NHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSD 66 AW +E + A L + + DD + + M L + + Sbjct: 55 AWVYATLRNVVGNEYRRRGRVTALVDKLGPMQDLAAAPVAVDDQLTVHAAMEALAEPDR- 113 Query: 67 LHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEM 119 DLL Y ++ +A C+ + RL +A G ++ L D E+ Sbjct: 114 --DLLRMAYWEDLSAPEIAQILGCTPTAVRIRLTRARGRLKKQLSIDDPEEEV 164 >UniRef50_UPI00016C3CD3 WD-40 repeat protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3CD3 Length = 1112 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%) Query: 32 KGLITSKVKSRPQCCDDD-----AMIICGCMARLKKNNSDLHDL-LVDYYVVGMTFMSLA 85 K ++ + P DD I +ARL +++ L L+ YV G+++ A Sbjct: 109 KRESANRERPAPSPADDTLWAELRERIDAELARL----PEVYRLPLLLCYVQGLSYADAA 164 Query: 86 GKHCCSDGYIGKRLQKAEGIIEGML 110 + CS G + RL++ + G L Sbjct: 165 RRLGCSPGALRGRLERGREQLRGRL 189 >UniRef50_Q0C1Q3 ECF sigma factor family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1Q3_HYPNA Length = 194 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLM 111 ++ + RL + + +++ Y GMT +A S+ I + + A + L Sbjct: 125 VLEKALIRLNVIDEEKAEIVELRYFGGMTLEEIAEIRGVSEATIKRNWRAARAWLLDCLN 184 >UniRef50_C8WRE2 RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRE2_ALIAD Length = 179 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 DD ++ ++ ++ D+LV YV G+T +A + G + RL + Sbjct: 107 SDDSTLLRADLARAMRAIRAEERDVLVLAYVQGLTLREIAERLQIPLGTVKTRLHRG 163 >UniRef50_B9TKF6 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TKF6_RICCO Length = 90 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 46 CDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGI 105 D+D + + + L + L ++ Y G+ +A ++ + + QKA + Sbjct: 24 TDEDILRVHEALEELAAVDQRLAQVVEMRYFGGLLETEIAEALGVTERTVQRDWQKARIL 83 Query: 106 I 106 + Sbjct: 84 L 84 >UniRef50_Q01WD0 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01WD0_SOLUE Length = 196 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 + + + RL K + ++ Y G+ +A + S + + A+ + G L Sbjct: 127 LELDQALDRLAKIDPRQCRVVELRYFAGLDEEEIALQLGISGRTVKRDWAMAKAWLYGEL 186 >UniRef50_A4JX61 Putative uncharacterized protein n=1 Tax=Burkholderia phage phi644-2 RepID=A4JX61_9CAUD Length = 139 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 4/128 (3%) Query: 2 RDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK 61 RDI++ LE WG A G + + S K Q D + + Sbjct: 3 RDIEIRLENWGKAQRTGAGGGRAIGSAEG-RYVAPSIEKRVAQVTVIDLLDADEVEQAWR 61 Query: 62 KNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIG---KRLQKAEGIIEGMLMALDIRLE 118 K ++L +Y++ M + K + L A+ IE +L + + Sbjct: 62 KIMPFDKEVLRMHYILRMDPRVICRKLRIPHRPVSTFNMALSHAKREIEKVLDRMTEKRR 121 Query: 119 MDIVVNNS 126 + Sbjct: 122 AHVARQKE 129 >UniRef50_B0VKH6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii SDF RepID=B0VKH6_ACIBS Length = 165 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 4/88 (4%) Query: 24 WSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLK----KNNSDLHDLLVDYYVVGM 79 + S L T + + Q D++A + + +K D + ++V+G Sbjct: 63 YMSDENLKDRLCTRRKGTCCQLNDNEARALHRLIIDIKLIEDHILQDWISAIWSHHVMGN 122 Query: 80 TFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + +A + S I + L+ I+ Sbjct: 123 SLRDIAQSNDTSVNQIRQDLKCGLAYIK 150 >UniRef50_A6GD49 RNA polymerase sigma-70 factor, ECF subfamily protein n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6GD49_9DELT Length = 218 Score = 40.7 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 14/114 (12%) Query: 5 QMVLERWGAWAA----NNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARL 60 + VL +W AW E + S+A G+ T+ ++R Q +A L Sbjct: 84 RNVLRQW-AWERKRKRTREEGLGEVSVADLGVGVSTAFRQAREQKL---------LVAGL 133 Query: 61 KKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 ++ D +L YY G+ +AG +G + R++KA+ ++E L AL Sbjct: 134 QRLPIDAQVILELYYWEGLRAREIAGVFAIPEGTVRGRIRKAKVLLEAELDALT 187 >UniRef50_C1ABY3 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABY3_GEMAT Length = 200 Score = 40.3 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 49 DAMII--CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 D ++ + L + L ++ Y G+T + A ++ + + KA G + Sbjct: 116 DGTLVALDDALDELARLAPRLAQVVECRYFGGLTELETAEALGVTERTVRRDWVKARGWL 175 Query: 107 EGML 110 G L Sbjct: 176 YGAL 179 >UniRef50_C1A7M9 Sigma factor, ECF-like family protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7M9_GEMAT Length = 193 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 24/59 (40%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 +D + + + +L++ + ++ + VG++ +A S + + A + Sbjct: 128 EDVLAVHDALEQLERLDPRQARIVELRFFVGLSLEEIAELLDISPATVSRDWAMARAWL 186 >UniRef50_C0D877 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D877_9CLOT Length = 924 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 + ++ + RL + +V YY+ ++ +A CS+G I RL I+ Sbjct: 126 ETKRLVQEMIDRLPEEQRMA---VVLYYLENLSVGQIARLMECSEGTIKSRLNYGRKSIK 182 Query: 108 GMLMALD 114 ++AL+ Sbjct: 183 AQVLALE 189 >UniRef50_A3I0X2 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I0X2_9SPHI Length = 179 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 24/63 (38%) Query: 48 DDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIE 107 ++ + + + RLK N ++ ++ G +A S + + + A+ + Sbjct: 115 EEVLHLNEALTRLKAINHRHCRVVEFHFFGGYKHEEIAQMMGVSIDTVRRDWRLAKAWLS 174 Query: 108 GML 110 L Sbjct: 175 KEL 177 >UniRef50_A2RP52 Putative uncharacterized protein ps612 n=2 Tax=Lactococcus lactis subsp. cremoris MG1363 RepID=A2RP52_LACLM Length = 100 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 22/46 (47%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKR 98 I +L + + ++V +++ + ++A + S+GYI K Sbjct: 40 INKVFEQLNAEHPREYKIIVRHHLKRTYYTTIAREQGVSEGYIRKL 85 >UniRef50_B4WLA9 Response regulator receiver domain protein n=2 Tax=Synechococcus sp. PCC 7335 RepID=B4WLA9_9SYNE Length = 216 Score = 39.9 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 5/38 (13%), Positives = 15/38 (39%) Query: 64 NSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQK 101 + ++ Y G++ ++A + SD + + Sbjct: 149 DPKWLKVIELKYQEGLSDQAIARRLGVSDRTVRNYWTR 186 >UniRef50_UPI0001C37E82 ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E82 Length = 199 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 53 ICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMA 112 I ++ N + +V YY+ G+T +A + K ++ AE ++ +L Sbjct: 130 ISELYNAIESLNPMQKERIVLYYIKGLTQQQIAELQRVRLFTVQKSIKAAEKNLKKILEM 189 Query: 113 LD 114 Sbjct: 190 GG 191 >UniRef50_Q01ZV6 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01ZV6_SOLUE Length = 205 Score = 39.2 bits (90), Expect = 0.038, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%) Query: 32 KGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCS 91 + + + D+ +++ + RL + L +++ Y G+T A S Sbjct: 116 RRVPLDDARDGFTSDPDEFLLLHQALDRLSDYDFSLANVIELRYFAGLTLEETAEIVGIS 175 Query: 92 DGYIGKRLQKAEGII 106 +R + AE + Sbjct: 176 VPTASRRQRMAEAWL 190 >UniRef50_D2LZ92 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ92_BACS4 Length = 180 Score = 39.2 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 43 PQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA 102 Q DD M L+ + LL +Y+ G + LA + + I RL++A Sbjct: 97 EQSSDDVGYEKIEIMELLETLPEEQCQLLKLFYIEGFSIEDLASIYKVPENTIKTRLRRA 156 >UniRef50_Q05SP3 Putative type III sigma factor n=1 Tax=Synechococcus sp. RS9916 RepID=Q05SP3_9SYNE Length = 248 Score = 39.2 bits (90), Expect = 0.047, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 2/84 (2%) Query: 19 HEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVG 78 + S A G LI C DD +L++ + +Y+ G Sbjct: 144 RSRDRYPSDADGDIPLIQELSDMTVSCDDDQQR--EWLQEQLEQLPQRARSCIERHYLAG 201 Query: 79 MTFMSLAGKHCCSDGYIGKRLQKA 102 + +A + CS I + L+ + Sbjct: 202 TSAKDIAKEDGCSCSEIRRILRSS 225 >UniRef50_UPI0001744968 hypothetical protein VspiD_19055 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744968 Length = 197 Score = 38.8 bits (89), Expect = 0.050, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 24/118 (20%) Query: 13 AWAANNHEDVTWSS-------IAAGFKGLITSKVKSR----PQCCDDDAM---------- 51 AW W S A + ++ + +++ Q DD A+ Sbjct: 69 AWLRLATSQSEWDSQAHFFGAAAEAMRRILVDRARTKSAVKRQLTDDPALAQSEEPAEGD 128 Query: 52 ---IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 +I + RL+K ++ +++ + G T +A S + ++ A+ + Sbjct: 129 HILLIHEALTRLEKEDAHAARIVMLKFFSGSTSEEIASMLGHSLRTVERQWTFAKARL 186 >UniRef50_B5JNN4 RNA polymerase sigma factor, TIGR02999 family n=2 Tax=Bacteria RepID=B5JNN4_9BACT Length = 223 Score = 38.8 bits (89), Expect = 0.051, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 26/56 (46%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGII 106 ++I + +LK+ + + ++V + + T +A S+ + +R A+ + Sbjct: 158 LLIDEALEQLKEKDPEQARVVVLKFFMSNTNAEVADMLRVSERTVERRWAYAKSWL 213 >UniRef50_A6WBB3 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WBB3_KINRD Length = 270 Score = 38.8 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 21/61 (34%) Query: 54 CGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMAL 113 + L++ + +LV Y T +A CS G + + + + +L Sbjct: 140 DEAVTALRQLSPRQRAVLVLRYYEDWTEAQIADALNCSTGTVKTQASRGLSRLRQLLDTS 199 Query: 114 D 114 Sbjct: 200 R 200 >UniRef50_B1YHB9 RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YHB9_EXIS2 Length = 181 Score = 38.8 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 8/100 (8%) Query: 15 AANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDY 74 N + + + A I K SR + D + L + D+LV + Sbjct: 80 IRNCYRVLNQQTAVADLIEQIPVKESSREEHLD--------LIDALSHLRKEYRDVLVLF 131 Query: 75 YVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALD 114 Y + +A + + L++ ++ L LD Sbjct: 132 YFHDVPMKEIASFIGITLNTVKTYLRRGREELKKQLGGLD 171 >UniRef50_Q3SQV6 IstB-like ATP-binding protein n=3 Tax=cellular organisms RepID=Q3SQV6_NITWN Length = 356 Score = 38.8 bits (89), Expect = 0.059, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 10/54 (18%) Query: 51 MIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEG 104 M++ +AR+++ ++++ G T ++A S + K L+ E Sbjct: 1 MLVVETIARIRR----------EHFIKGKTIRAIARDLKVSRNTVRKVLRSGET 44 >UniRef50_B1I489 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I489_DESAP Length = 186 Score = 38.4 bits (88), Expect = 0.079, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 52 IICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGML 110 +I + L D+++ Y MT +A +G + RL+KA I+E +L Sbjct: 118 VISAAIDGLAAEYQ---DVILLKYQFEMTTKRIAETLNIPEGTVKTRLRKARAILESVL 173 >UniRef50_B6XKQ8 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XKQ8_9ENTR Length = 183 Score = 38.4 bits (88), Expect = 0.081, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 24/51 (47%) Query: 45 CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYI 95 C D + + ++ + ++ L ++L +Y+ ++ +LA + S I Sbjct: 97 CSDTEGGKMDKVISAVFAHDQGLLNVLKQHYIYKKSYYALALELHESKPSI 147 >UniRef50_UPI000178967B RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178967B Length = 216 Score = 38.0 bits (87), Expect = 0.092, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 49 DAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEG 108 +A+ + + L+ DL ++ +Y + +A +G + RL +A I+ Sbjct: 109 EAIELNEAVTHLED---DLRRVIQLHYYRDIPINHIAKMIGIPEGTVKSRLHRARAILAE 165 Query: 109 MLMALDIR-LEMDIVVNNSN 127 L + R + D +V + Sbjct: 166 RLESSTERNVSHDPIVCKES 185 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.145 0.422 Lambda K H 0.267 0.0441 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 743,047,477 Number of Sequences: 3077464 Number of extensions: 24615974 Number of successful extensions: 98738 Number of sequences better than 1.0e-01: 119 Number of HSP's better than 0.1 without gapping: 145 Number of HSP's successfully gapped in prelim test: 50 Number of HSP's that attempted gapping in prelim test: 98475 Number of HSP's gapped (non-prelim): 199 length of query: 127 length of database: 1,040,396,356 effective HSP length: 93 effective length of query: 34 effective length of database: 754,192,204 effective search space: 25642534936 effective search space used: 25642534936 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 87 (38.0 bits)