Reference sequence (query): batch____ Identities normalised by aligned length. Colored by: property
HSP processing: ranked Search cycle: 3
1 [ . . . . : . . . . 1 ] 102
batch____ bits E-value N 100.0% 1:102 MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
1 UniRef50_A4W5R3 Protein hfq n=443 Tax=Bacte... 129 2e-29 1 92.2% 1:102 1:103 MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTGSNFHHGSNAQGSSaaQDSDETE
2 UniRef50_C1F408 Protein hfq n=1 Tax=Acidoba... 120 1e-26 1 37.8% 4:101 6:104 ---AQNIQDTFLNTVRKDKTPITIYLVSGVKLTGKIRSFDKYSVLLENNSqqLIFKHAISTVVSSRSVLHGDHRPGVAGHGAPPISPTPPAGTHSTPGESS-
3 UniRef50_A5EVF4 Protein hfq n=1 Tax=Dichelo... 120 1e-26 1 62.9% 1:97 1:103 MSKSQSLQDPYLNALRKERVPVSIYLVNGIKLQGQIESFDAFVILLRNNISQMVYKHAVSTIVPSRNIHLSReeAGEEISAEYTPNAEGQAEATADP-----
4 UniRef50_Q43971 Protein hfq n=2 Tax=Xanthob... 118 6e-26 1 43.8% 3:82 5:85 --RTQNLQDTFLNHVRKSKTPLTIFLVNGVKLQGVVTWFDNFCVLlrDGHSQLVYKHAISTIMPGHPVQLFDPTDEVASEKA--------------------
5 UniRef50_A9HLS1 Protein hfq n=74 Tax=Proteo... 113 2e-24 1 48.8% 1:80 1:83 MAKeqNVQDVFLNHVRRSKTPVTVFLVNGVKLQGIITWFDNFSVLlrDGHTQLVYKHAISTVMPATPVVLFDPSRTEGAT----------------------
6 UniRef50_Q9KAC4 Protein hfq n=3 Tax=Firmicu... 110 2e-23 1 42.9% 1:77 1:78 MKSSVNIQDHFLNQLRKENIPVTVFLLNGFQLRGLVKGFDNFTVILeeGKQQLVYKHAISTFAPQRNVQMKTENEPS-------------------------
7 UniRef50_Q0AYA9 Protein hfq n=6 Tax=Clostri... 109 4e-23 1 43.0% 1:79 1:81 MSKSqnLQDAFLNQVRKDKIPVTVFLVNGFQIKGMVRGFDNFTVIIedQKQQLVYKHAISTVAPLRPISMLNLEAKSDD-----------------------
8 UniRef50_B3PYU7 Protein hfq n=115 Tax=Bacte... 109 4e-23 1 42.1% 3:78 4:80 --RSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLlrDGHSQLVYKHAISTIMPGQPMQMFESEEAAS------------------------
9 UniRef50_Q5F9R5 Protein hfq n=26 Tax=Neisse... 109 4e-23 1 60.2% 2:99 3:97 -AKGQMLQDPFLNALRKEHVPVSIYLVNGIKLQGQVESFDQYVVLLRnsVTQMVYKHAISTIVPARSVNLQHENKPQAA----PASTLVQVETVQQPAE---
10 UniRef50_B0SBH9 Protein hfq n=17 Tax=Bacter... 108 6e-23 1 39.5% 1:81 1:82 MSAKNNIQDQLLNTARKEKIDLTIYLLNGVPLKGKVVSFDNFTIILeeNKQNLVYKHAISTIIPAKPIKLHSEETPKEAGG---------------------
11 UniRef50_B9KBC4 Protein hfq n=1 Tax=Thermot... 107 9e-23 1 38.1% 1:84 11:95 LAEKFNLQDRFLNHLRVNKIEVKVYLVNGFQTKGFIRSFDSYTVLLESGNQqlIYKHAISTIIPSSYVMLMPRKQEPEKEDETP------------------
12 UniRef50_B2JKR6 RNA chaperone Hfq n=1 Tax=B... 107 9e-23 1 40.6% 2:102 3:103 -SAESHPQNDFMNAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVgqGIYKRAISTitGSRPAPRAGRPSHGDHSARGPHGSR----EHREPREPRE
13 UniRef50_Q5WFY7 Protein hfq n=4 Tax=Firmicu... 107 1e-22 1 41.3% 1:75 1:76 MKATVNIQDQFLNQLRKESIPVTVFLLNGFQLRGQVKGFDNFTVIVeeGRQQLVYKHAISTFAPQKNVQLKNEAE---------------------------
14 UniRef50_Q14IJ3 Protein hfq n=18 Tax=Franci... 106 3e-22 1 58.8% 1:97 1:87 MSRISSLQDPFLNALRKEKVSVSVYLVNGIKLQGQVEAFDQFCIVLRNTVNQMVYKHAISTIVPAKSVRMIY------NSFNPYH----QNSNDEQD-----
15 UniRef50_C5D9J0 Protein hfq n=7 Tax=Bacteri... 105 5e-22 1 41.1% 1:73 1:74 MKNSINIQDQFLNQLRKDGTQVTVFLLNGYQLKGYIKGFDNFTVLLeqGKQQLIYKHAISTFAPEKNVRFETE-----------------------------
16 UniRef50_Q67NL2 Protein hfq n=3 Tax=Clostri... 104 1e-21 1 47.9% 2:74 3:76 -KASASLQDGFLNLLRRENIPATIYLVNGYQLKGYIRGFDNFTVAVedGRVQLVYKHALSTITPARPLPVSVSQ----------------------------
17 UniRef50_C9KPY2 RNA chaperone Hfq n=1 Tax=M... 103 2e-21 1 43.8% 3:82 4:84 --KVINLQDSFLNQVRKENVPVTIHLVNGFQIKGSVRGFDNFTVVLDvgKQQMVYKHAISTITPAHPIAGTFGADHPDKKSE--------------------
18 UniRef50_Q31GP2 Protein hfq n=46 Tax=Proteo... 102 3e-21 1 54.9% 1:82 6:87 VAKALPIQDPYLNALRKEKINVAIYLVNGVKLQGRVDSFDQFVVLLRSNVTQMVYKHAISTIVPARDPKAYEFEAQETEAKD--------------------
19 UniRef50_Q140R2 Conserved nucleoprotein, Hf... 102 4e-21 1 40.7% 2:92 3:97 -SAESHPQNDFMNAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVgqGIYKRAISTitGTRPAPRAGRPSHGEHTTRGPHGSREPRD----------
20 UniRef50_O66512 Protein hfq n=4 Tax=Aquific... 102 4e-21 1 48.7% 6:81 4:80 -----KLQESFLNTARKKRVKVSVYLVNGVRLQGRIRSFDLFTILLEDGKQqlVYKHAITTIVPHERLEIEFEEAGVPGQG---------------------
21 UniRef50_D2RKG7 RNA chaperone Hfq n=2 Tax=C... 101 5e-21 1 34.6% 3:80 7:85 --KPLNLQDSFLNRVRSEKKTIVVYLLNGFQVRGRVWGFDNFTVIMeeGKQQLIYKHAISTIAPLENEAILVLKKGNDQG----------------------
22 UniRef50_A8F5B4 Protein hfq n=11 Tax=Thermo... 101 8e-21 1 47.1% 1:70 1:71 MTEKFNLQDRFLNMLRTGKIEVKVYLVNGFQTKGIIRSFDSYTILLeeNQQNLIYKHAISTIMPSSFVRL--------------------------------
23 UniRef50_Q3SIN9 Protein hfq n=19 Tax=cellul... 101 9e-21 1 59.7% 1:77 1:80 MAKEHnlQDVFLNTLRKERIPVSVFLVNGIKLMGRIESFDQFVVLLKGQDqqMIFKHAISTISPSREVVLPQRDAEA-------------------------
24 UniRef50_A0KPP4 Hfq protein n=3 Tax=Aeromon... 100 1e-20 1 35.1% 6:102 19:120 -----NGQDSALNWLRKNRSQVAIFLVSGIKLEGTISGFDQYSVLLTdgNQQLVYKAKISTIasGRpvSIQRARKPRVSMAPRPHGAPGRYDDNQGGGSSEQ
25 UniRef50_Q187T2 Protein hfq n=21 Tax=Clostr... 99 3e-20 1 46.2% 6:70 7:73 -----NLQDLFLNNARKERIPVTIYLVNGVQVKGLVKGFDSYIILIenRQQNMIYKHAVSTIQPGKYINL--------------------------------
26 UniRef50_A4XL44 Protein hfq n=6 Tax=Clostri... 98 7e-20 1 45.2% 1:73 1:76 MAknLNLQDLFLNQLRKEKVNVTIFLLSGFQLKGVIKGFDNFTLVveNNKQQLIYKHAISSILPSKPINYMAQ-----------------------------
27 UniRef50_B2V6C4 RNA chaperone Hfq n=4 Tax=A... 96 2e-19 1 42.7% 1:82 1:85 MAKEKklQEKFLNTIRKEKVRCDVYLVNGVKLEGKIKYFDNFVILLKEgrQVLVYKHAITTISPKKEIEFEYDQEEIEDAEE--------------------
28 UniRef50_A9AK18 RNA chaperone Hfq n=68 Tax=... 92 7e-18 1 39.0% 3:102 56:160 --AESHPQNDFINSARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVgqGIYKRAISTIqgSRPGGGPRGPRTGGRPGGREGGGHSPYGSHGGSREPRE
29 UniRef50_Q029X0 RNA-binding protein Hfq n=2... 90 2e-17 1 39.2% 4:77 5:79 ---AQNIQDSFLNNARKDKIVLTIYLMSGVKLSGRIKSFDKYSLVLETNNqqLIFKHAISTVVTQKTAHSYSSNSPV-------------------------
30 UniRef50_Q3A502 RNA-binding protein Hfq n=1... 90 3e-17 1 43.1% 1:65 1:66 MSKtfNIQDQYLNQARKERVRVNIIMMSGEKLDGFIKSFDSFCVLIESKGDLLLYKHAISSITSA-------------------------------------
31 UniRef50_B6IY17 Host factor protein n=1 Tax... 88 9e-17 1 34.2% 1:76 1:78 MAFSEALQSKVLDVLRTGGTEVTVFLVTGVRLVGRIVAHDAYSLALTGHGgqLIYKHAVTTLVPSSPLSLYDPSSS--------------------------
32 UniRef50_D0ZAP0 RNA-binding protein Hfq n=3... 82 6e-15 1 76.7% 27:99 1:76 --------------------------MNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSGNAGTGSAgsYHHGGQaqPTQGSDDAE---
33 UniRef50_Q5HPN7 Host factor-I protein, puta... 81 1e-14 1 29.3% 1:82 1:79 MIANENIQDQALENFKSEKTEVTIFFLNGFQMKGVVENYDKYVVSlsQGKQHLIYKHAISTFT----VDNESSEATEVNSEE--------------------
34 UniRef50_C8W3I4 RNA chaperone Hfq n=1 Tax=D... 80 2e-14 1 35.9% 6:69 19:83 -----SVQNKILVQLKEQQASIIVYLINGYRLGGKLKDFDTFTVILEEKETqiVYKHAISTIIPEKLLE---------------------------------
35 UniRef50_C1SNE1 RNA chaperone Hfq n=1 Tax=D... 80 2e-14 1 39.0% 6:64 69:128 -----PMQDIFLNEVRKSRSPIISFLINGVKIRGSLIGFDNYTLLTseGRQQLVYKNTVSTIFP--------------------------------------
36 UniRef50_D1ZW62 Whole genome shotgun sequen... 79 4e-14 1 44.3% 24:84 1:64 -----------------------MFLVKGVKLQGIVTWFDNFSVLLrdGQSQLIYKHAISTIMPAGPADLSsqAASENTSKNAP------------------
37 UniRef50_A4V7P6 Putative uncharacterized pr... 78 1e-13 1 26.9% 3:80 26:107 --RSTNEQDRFLDYCQRNEILIKVYLDSGRALQGKIVDHDRKCILlvEKIPKMIPKSYIALVRAEEILPLFLEYKGRGNH----------------------
38 UniRef50_B4U9V4 RNA chaperone Hfq n=5 Tax=A... 77 2e-13 1 35.0% 4:63 2:62 ---TENLQDKILEDAKEKGIEVVIYLTRGNRMVGKVLDQDKYTVLLkdSGTNLIYKHAISTIV---------------------------------------
39 UniRef50_Q73AM9 Host factor-I protein n=136... 77 2e-13 1 27.1% 5:63 18:77 ----EHLQEELYKQIKEEKGIVTIFLKSGVRIVGEVVAIDKFTVllVDGKQQLIYKQAVSTIM---------------------------------------
40 UniRef50_C3HSH3 Host factor-I protein n=3 T... 76 3e-13 1 37.9% 6:63 2:60 -----HTQEDFYTKLIEANRLVTIFLINGVRVPGIIIAVDKFSVLISsgKQQFIYKHAISTVS---------------------------------------
41 UniRef50_B5LPT9 Putative uncharacterized pr... 72 5e-12 1 19.4% 9:80 9:81 --------DSILMYLEHYEMPCTFVLSNGKPLKGKVVGRDKYMIYVeeEKQHFLFKSNVMDVIPNEKIDLKTAKESVKNH----------------------
42 UniRef50_C3IB87 Host factor-I protein n=1 T... 72 7e-12 1 29.8% 7:63 14:71 ------IQEDMYKELIDKKRTVTIFLKSGVLIRGKILSTDKFTvmMVQGKQQLVFKQALSTII---------------------------------------
43 UniRef50_Q8YVD1 Asl2047 protein n=2 Tax=Nos... 72 7e-12 1 27.3% 10:64 14:70 ---------RQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCieNSRQTTIWKQAIAYLQP--------------------------------------
44 UniRef50_B7JTR0 RNA chaperone Hfq n=19 Tax=... 69 4e-11 1 35.7% 8:63 20:76 -------QEYLLQEAFQKRKNIMLILLKGLHIKGIIRGYDIFSILIeeGKQQLVYKHAISTIR---------------------------------------
45 UniRef50_Q1IPZ0 Putative uncharacterized pr... 69 7e-11 1 20.0% 3:82 20:103 --EETHEEAAYLKMLGEKQKPVKIKLVDGEIVKGWIEYYDKAMvlTREGAPNliYKHDIRYIspVKKAPRADGAKPEAVRAE--------------------
46 UniRef50_Q1LCL6 Host factor-I protein n=2 T... 68 8e-11 1 28.6% 4:66 11:77 ---SRKLQHLHYAAHGASRNAVIVHLSNGTRLTGVVLASDNYMVLleDPTPTLIYKRAITVVTPAH------------------------------------
47 UniRef50_B7IZ69 Host factor Hfq n=4 Tax=Bac... 65 5e-10 1 30.0% 3:62 2:75 --ANQTVQNKVIENVKGKNSKVNFILNNGFRIEGKIVAYDDFCILVSTKApqLIYKHNISTI----------------------------------------
48 UniRef50_B9YM55 Putative uncharacterized pr... 65 8e-10 1 20.4% 10:63 14:69 ---------RLLQNWIKQKATVEFKLVTGDVITGKVFWQDSNCVCILDgeQLTVWKLAIAYMR---------------------------------------
49 UniRef50_Q8DGM1 Tsr2295 protein n=5 Tax=Cya... 63 3e-09 1 14.5% 10:64 13:69 ---------RQVQTFIKDSTEVEVKLSTSDLVVGKVRWQDMNCLCVVDhqPTIIWKQAIVFIKP--------------------------------------
50 UniRef50_Q0JYN3 Putative uncharacterized pr... 62 4e-09 1 35.1% 7:63 16:76 ------LQHQQFAAYRTSQAPVIVHLATGARLQGLVLASDDYVVLldDIRPTVVYKRAICLVT---------------------------------------
51 UniRef50_B7K2P7 Putative uncharacterized pr... 50 2e-05 1 18.2% 10:64 12:68 ---------RLVQQWIKDKKEVDVKLITNDLLVGIILWQDPQCIYLSegQSTLIWRDSLVYLKP--------------------------------------
52 UniRef50_C3EBY5 Putative uncharacterized pr... 50 2e-05 1 18.0% 12:72 1:62 -----------MQYLDHKKMPCTFVLQGGKALKGIIDGRDTYTIFVqeEKTHCLFKGSVIYIIPAEKLDLKE------------------------------
53 UniRef50_UPI0001C3852D hypothetical protein AplaP_... 49 5e-05 1 23.6% 12:66 14:70 -----------LQTYIKDKPTVKIQLLTEDMLEGQMLWQDPNCICLqqGEPILVWREAIAYIQAKS------------------------------------
54 UniRef50_Q2JKK0 Putative uncharacterized pr... 48 9e-05 1 19.2% 12:63 29:82 -----------LQKVIKDRETLEVKLNTGDVFVGQLRWQDPDCLCLAdgRESLLWRSAIAFIK---------------------------------------
55 UniRef50_P74112 Ssr3341 protein n=10 Tax=Cy... 47 1e-04 1 29.8% 10:66 12:70 ---------RQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVdeRSTIVRLAAIAYITPRR------------------------------------
56 UniRef50_C1F4E4 Hfq domain protein n=1 Tax=... 45 5e-04 1 19.7% 2:62 108:169 -SEGSHAEAFYFQKQMQSQTPMVFMLDSGEKIEGCIEWYDRYAVKVRHARRrlIYKSSIKYI----------------------------------------
57 UniRef50_C1F3F6 Putative uncharacterized pr... 44 0.001 1 21.2% 11:90 25:104 ----------YLRSLSERQITVSIELRDGETVTGWIEYFDDRMilTRKNHPNliYKQQIRTIT--EQARRHDAARTSPAAEKPTAADEVK------------
58 UniRef50_UPI0001C16BB3 conserved hypothetical prot... 44 0.001 1 15.8% 10:66 32:90 ---------RQIQNWIKQKTTVQFKLTTGDTITARIFWQDVNCICVVDSQDdtINRLAIVYLKVSH------------------------------------
59 UniRef50_Q7NCE9 Gsr3030 protein n=1 Tax=Glo... 43 0.002 1 23.3% 10:69 12:72 ---------RYLQKLIRDQSPVSIATRAGDAFNGVLRWQDGECLCLKTAEGelLWRSGLTFIRPLPPGP---------------------------------
60 UniRef50_Q1ISF9 Putative uncharacterized pr... 43 0.003 1 19.7% 2:62 60:122 -AEQTHAENFYYQKQMQAKTPMVFVLQDGEEIHGSIEWYDKTCLKisNGANLLIYKPSIKYI----------------------------------------
61 UniRef50_C9RGX7 Putative uncharacterized pr... 43 0.003 1 27.7% 16:62 22:69 ---------------RLNGKNVKIFLRNGEVLDAEVNGVSNYEIMVKVGERnlIFKHAIDYI----------------------------------------
62 UniRef50_Q58830 Uncharacterized protein MJ1... 42 0.004 1 29.8% 16:62 22:69 ---------------RLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVGDRnlVFKHAIDYI----------------------------------------
63 UniRef50_A6NY23 Putative uncharacterized pr... 41 0.011 1 31.4% 12:62 7:58 -----------LQELASKKVEVRVIIVNGFQIVGKILDADESAVIvvNGSRKVVNLSAVSTV----------------------------------------
consensus/100% ...........................tt..h.u.h...s...l.h......hl.h..l..h........................................
consensus/90% ...........ht.hhttt..h.hhL.sG..l.G.l...D...lhl.pt..phla+pslshl.....................................
consensus/80% ...........hp.hhppph.ltlhLhsG.tlpG.l..hDphslhlpptttphlaKpAIshl......................
consensus/70% ......pp.hlpthpcpph.VplhLhsGhplpGhlpshDpaslhlcpsppphlYKcAIoolhs.................
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