Phyre 2 alignment of P0ADV1 with c1xctL_

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Job Description | P0ADV1
Confidence | 7.19% | Date | Thu Jan 5 11:21:54 GMT 2012
Rank | 5 | Aligned Residues | 28
% Identity | 14% | Template | c1xctL_
PDB info | PDB header:immune system | Chain: L: PDB Molecule:protein l; | PDBTitle: complex hcv core-fab 19d9d6-protein l mutant (d55a, l57h, y64w) in2 space group p21212
Resolution | 3.05 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | T | G | D | T | D | Q | P | I | H | I | E | S | D | Q | Q | S | L | D | M | Q | G | N | V | V | T | F | T | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | P | E | E | P | K | E | E | V | T | I | K | V | N | L | I | F | A | D | G | K | I | Q | T | A | E | F | K | G
Template Known Secondary structure |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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