BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (144 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P26266 Ferric enterobactin transport protein fepE n=158... 292 2e-78 UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T... 125 3e-28 UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter... 83 2e-15 UniRef50_C4K3Z7 Regulator of length of O-antigen component of li... 80 3e-14 UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers... 79 5e-14 UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10... 77 2e-13 UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide... 75 9e-13 UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr... 72 5e-12 UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep... 71 9e-12 UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En... 64 2e-09 UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T... 62 8e-09 UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini... 60 2e-08 UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom... 40 0.023 >UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular organisms RepID=FEPE_ECOLI Length = 377 Score = 292 bits (747), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV Sbjct: 55 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL Sbjct: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174 Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144 SFTAPTSEEAQTVLSGYIDYISTL Sbjct: 175 SFTAPTSEEAQTVLSGYIDYISTL 198 >UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter RepID=C9XZM2_CROTZ Length = 377 Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/140 (47%), Positives = 96/140 (68%), Gaps = 1/140 (0%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L ++F+LPQKWTS AVV+ PE Q EL++ L+VLD+D ID N+F+KKF S Sbjct: 55 LALAFLLPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSR 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 +L E++LR+SP+V Q+KEA+ D L RA+ +++++K + N + K S Y+SWTL Sbjct: 115 ALQEKFLRTSPWVQAQVKEAQSDTESLERAVTLVAQRIK-MTSNDNPKAPTASPYSSWTL 173 Query: 121 SFTAPTSEEAQTVLSGYIDY 140 SFTAP +++AQ VL YI+Y Sbjct: 174 SFTAPKAQDAQRVLKEYINY 193 >UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae RepID=B4F1Q0_PROMH Length = 372 Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 12/147 (8%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62 ++ LPQKWTS A +T P + ++L + L ++D+D ++ + + FI + S L Sbjct: 59 VASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSRVL 118 Query: 63 LEEYLRSSPYVMDQLKEAKIDE---LDLHRAIVALSEK---MKAVDDNASKKKDEPSLYT 116 EEYL ++ Y + L AK+D+ LD + I + K +KA D SK DE Sbjct: 119 REEYLVNTDYYKNLL--AKMDDPTPLDKRKLIETIVTKDINLKASD---SKNSDE-EFSG 172 Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIST 143 LSFTAPTSEEA +LSGYI +IST Sbjct: 173 EINLSFTAPTSEEAYDLLSGYIRFIST 199 >UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5 Length = 308 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 4/143 (2%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61 LI + LP+KWTS A++T + Q Q E KL++ D+ + D+ +LFI+ F S Sbjct: 62 LICYKLPEKWTSKAIITYIDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNV 121 Query: 62 LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121 L E+YL ++ Y +K+ + I+ K ++ + S K+++ Y +TLS Sbjct: 122 LKEKYLVNTSYFQKLIKDHPENRNQFMLDII----KNIHIEYSKSNKENDFKGYVFYTLS 177 Query: 122 FTAPTSEEAQTVLSGYIDYISTL 144 ++A T+++AQ +L+GYI+YIS + Sbjct: 178 YSADTAKDAQNLLNGYINYISAI 200 >UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia RepID=A4TP85_YERPP Length = 383 Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 4/146 (2%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L++S+ILPQKWTS A++ P Q Q L++ T L VLD+ + + + F + F S Sbjct: 58 LVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQ 117 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVA--LSEKMKAVDDNASKKKDEPSLYTSW 118 L E+YL ++ Y +K D LD RA++ ++E + +V+ K + E Y + Sbjct: 118 DLREQYLVNTNYFKRLMKNNPEDGLD-KRALIERIVNENISSVNPLKDKTEGENE-YRYY 175 Query: 119 TLSFTAPTSEEAQTVLSGYIDYISTL 144 LS++A T +A+ +L G I+Y++T+ Sbjct: 176 KLSYSASTPTDARDLLQGSINYVNTI 201 >UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia RepID=C4UHK4_YERRU Length = 384 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 85/145 (58%), Gaps = 4/145 (2%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L++S+ILPQKWTS +++ P Q Q L+K L VLD+++ I + F + F S Sbjct: 58 LVVSYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQ 117 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVA--LSEKMKAVDDNASKKKDEPSLYTSW 118 L E+YL ++ Y +K++ D ++ RA++ ++ + +++ K ++ Y + Sbjct: 118 DLREQYLINTDYFKQMMKDSPEDAIE-RRAVIENIVNNSIGSINPIKDKSGNDNE-YRYY 175 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143 LS++A T+ +A+ +L GYI+++++ Sbjct: 176 KLSYSASTAVDARDLLQGYINFVNS 200 >UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q4F4_PROST Length = 372 Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 5/145 (3%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 + + F LPQKW+S AVV PP + +++ +L VLD+ I + + FN FI +++S Sbjct: 57 IFVVFQLPQKWSSTAVVIPPSSEEIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSK 116 Query: 61 SLLEEYLRSSPYV--MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 E Y+RS+ Y + + + E + R + + + D + K++ S + Sbjct: 117 VNQEAYVRSTNYFKKLSEQVNSTDKENEQQRLVNTIISNNIGLKDQS---KEKNSTSSDI 173 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143 L+F APT EAQ +LSGY+ Y +T Sbjct: 174 ILTFVAPTPSEAQDLLSGYVRYTAT 198 >UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia RepID=D1P4F6_9ENTR Length = 375 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 11/142 (7%) Query: 7 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 66 LPQKWTS A++ P + +E+ + +L LD +I + +N FI +++S E+Y Sbjct: 63 LPQKWTSEAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVNQEDY 122 Query: 67 LRSSPYVMDQL-----KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121 +RS+ Y L K +E L I++ S K+K NA +K + S LS Sbjct: 123 VRSTEYYQSLLAKLGDKNDVQEEQRLVNRIISDSIKLKY---NAKEKDSDDS---DIILS 176 Query: 122 FTAPTSEEAQTVLSGYIDYIST 143 FTAPT+ EAQ +L+GYI Y ++ Sbjct: 177 FTAPTAIEAQDLLNGYIRYTAS 198 >UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BC0B Length = 379 Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 9/139 (6%) Query: 6 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65 +LPQKW+S A+V PP + +E+ +L VLD+ I + FN F+ +++S E Sbjct: 69 LLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQES 128 Query: 66 YLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASK----KKDEPSLYTSWTLS 121 Y+RS+ Y + L E KID D ++A + ++ N K K++ S LS Sbjct: 129 YIRSTDYYHN-LAE-KIDPKD---DVIAQQRLVNSIISNDIKIQDLSKEKNSTSNDIVLS 183 Query: 122 FTAPTSEEAQTVLSGYIDY 140 FTAP EAQ +L GYI Y Sbjct: 184 FTAPLPTEAQDLLEGYIRY 202 >UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae RepID=Q7N0P7_PHOLL Length = 367 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 7/141 (4%) Query: 6 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65 ++PQKW+S+A + P+ + Q L+ TKL VL+L + + +N F+ F S L EE Sbjct: 60 LMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSRVLREE 119 Query: 66 YLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDN--ASKKKDEPSLYTSWTLSFT 123 YL ++ Y + + E+ H +V K V+DN +S K ++ L+F+ Sbjct: 120 YLVNTEYFKNLVAESGD-----HSPLVKRKLIEKIVNDNISSSSKAEKDDENGETKLTFS 174 Query: 124 APTSEEAQTVLSGYIDYISTL 144 A T+E+A +L+GYIDY+S++ Sbjct: 175 AGTAEDAYNLLNGYIDYVSSV 195 >UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella RepID=C5BCN1_EDWI9 Length = 357 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62 + +LPQKWTS A + P + + + +L +LD+ + F++ ++S + Sbjct: 45 VKTLLPQKWTSYAELIPAQARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQIV 104 Query: 63 LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122 EY+ + Y L A D L R + +L++K + ++ + E YT + L Sbjct: 105 RREYIAQTDY-YKTLAAALSDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRLGV 163 Query: 123 TAPTSEEAQTVLSGYIDYIST 143 +A +S+EA +L GYID+++ Sbjct: 164 SARSSQEAHALLQGYIDFVAA 184 >UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZ47_YERIN Length = 372 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 69/141 (48%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L++ F LPQKWTS++V+ P + L+ +L+V +D ID +++ S Sbjct: 55 LIVGFFLPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSR 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 L + +L+ + Y+ +K+ DE + +S + NA+ K + L Sbjct: 115 ILRDAFLQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRL 174 Query: 121 SFTAPTSEEAQTVLSGYIDYI 141 F+A T + A+ +L GY++Y+ Sbjct: 175 KFSAQTPDSAKDLLQGYMNYV 195 >UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila RepID=Q8KNM2_AERHY Length = 362 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 11/142 (7%) Query: 4 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKKFQS 59 + + PQ W S + + PP + + LE +L + I ++ + F+ F S Sbjct: 58 ALLAPQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFNS 117 Query: 60 VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119 + ++L Y+ + A I + RA++ K V+ ++ D PS + T Sbjct: 118 FNNKRQFLIEKGYLDMDAEAAGITDDKGKRALL-----RKMVNGISAVALDAPS--DNIT 170 Query: 120 LSFTAPTSEEAQTVLSGYIDYI 141 LSF A T+ EAQ L YI +I Sbjct: 171 LSFGAATATEAQQRLEQYIAFI 192 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P26266 Ferric enterobactin transport protein fepE n=158... 177 9e-44 UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers... 164 5e-40 UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10... 164 9e-40 UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini... 162 3e-39 UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T... 157 6e-38 UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T... 153 2e-36 UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter... 149 3e-35 UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide... 148 4e-35 UniRef50_C4K3Z7 Regulator of length of O-antigen component of li... 147 1e-34 UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr... 141 5e-33 UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep... 139 3e-32 UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En... 127 7e-29 Sequences not found previously or not previously below threshold: UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom... 66 4e-10 UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi... 63 2e-09 UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei... 62 5e-09 UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 62 7e-09 UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T... 60 1e-08 UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba... 59 4e-08 UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C... 57 2e-07 UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T... 55 8e-07 UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 54 1e-06 UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete... 54 1e-06 UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1... 53 4e-06 UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T... 52 8e-06 UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ... 47 2e-04 UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannhei... 47 2e-04 UniRef50_A5KZS4 Regulator of length of O-antigen component of li... 44 0.001 UniRef50_A1SRR6 Chain length determinant protein-like protein n=... 44 0.002 UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1... 43 0.003 UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T... 42 0.006 UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0... 41 0.012 UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn... 40 0.033 UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re... 39 0.060 UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinob... 39 0.065 >UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular organisms RepID=FEPE_ECOLI Length = 377 Score = 177 bits (449), Expect = 9e-44, Method: Composition-based stats. Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV Sbjct: 55 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL Sbjct: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174 Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144 SFTAPTSEEAQTVLSGYIDYISTL Sbjct: 175 SFTAPTSEEAQTVLSGYIDYISTL 198 >UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia RepID=A4TP85_YERPP Length = 383 Score = 164 bits (416), Expect = 5e-40, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 77/144 (53%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L++S+ILPQKWTS A++ P Q Q L++ T L VLD+ + + + F + F S Sbjct: 58 LVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQ 117 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 L E+YL ++ Y +K D LD I + + + + K + + Y + L Sbjct: 118 DLREQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKL 177 Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144 S++A T +A+ +L G I+Y++T+ Sbjct: 178 SYSASTPTDARDLLQGSINYVNTI 201 >UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia RepID=C4UHK4_YERRU Length = 384 Score = 164 bits (414), Expect = 9e-40, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 77/143 (53%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L++S+ILPQKWTS +++ P Q Q L+K L VLD+++ I + F + F S Sbjct: 58 LVVSYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQ 117 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 L E+YL ++ Y +K++ D ++ I + + K + Y + L Sbjct: 118 DLREQYLINTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKL 177 Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143 S++A T+ +A+ +L GYI+++++ Sbjct: 178 SYSASTAVDARDLLQGYINFVNS 200 >UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZ47_YERIN Length = 372 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 69/141 (48%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L++ F LPQKWTS++V+ P + L+ +L+V +D ID +++ S Sbjct: 55 LIVGFFLPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSR 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 L + +L+ + Y+ +K+ DE + +S + NA+ K + L Sbjct: 115 ILRDAFLQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRL 174 Query: 121 SFTAPTSEEAQTVLSGYIDYI 141 F+A T + A+ +L GY++Y+ Sbjct: 175 KFSAQTPDSAKDLLQGYMNYV 195 >UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter RepID=C9XZM2_CROTZ Length = 377 Score = 157 bits (398), Expect = 6e-38, Method: Composition-based stats. Identities = 66/142 (46%), Positives = 97/142 (68%), Gaps = 1/142 (0%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L ++F+LPQKWTS AVV+ PE Q EL++ L+VLD+D ID N+F+KKF S Sbjct: 55 LALAFLLPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSR 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 +L E++LR+SP+V Q+KEA+ D L RA+ +++++K + N + K S Y+SWTL Sbjct: 115 ALQEKFLRTSPWVQAQVKEAQSDTESLERAVTLVAQRIK-MTSNDNPKAPTASPYSSWTL 173 Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142 SFTAP +++AQ VL YI+Y + Sbjct: 174 SFTAPKAQDAQRVLKEYINYAA 195 >UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella RepID=C5BCN1_EDWI9 Length = 357 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 + +LPQKWTS A + P + + + +L +LD+ + F++ ++S Sbjct: 43 FAVKTLLPQKWTSYAELIPAQARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQ 102 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 + EY+ + Y L A D L R + +L++K + ++ + E YT + L Sbjct: 103 IVRREYIAQTDYYK-TLAAALSDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRL 161 Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143 +A +S+EA +L GYID+++ Sbjct: 162 GVSARSSQEAHALLQGYIDFVAA 184 >UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae RepID=B4F1Q0_PROMH Length = 372 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 2/142 (1%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62 ++ LPQKWTS A +T P + ++L + L ++D+D ++ + + FI + S L Sbjct: 59 VASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSRVL 118 Query: 63 LEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121 EEYL ++ Y + L + LD + I + K + + SK DE LS Sbjct: 119 REEYLVNTDYYKNLLAKMDDPTPLDKRKLIETIVTKDINLKASDSKNSDE-EFSGEINLS 177 Query: 122 FTAPTSEEAQTVLSGYIDYIST 143 FTAPTSEEA +LSGYI +IST Sbjct: 178 FTAPTSEEAYDLLSGYIRFIST 199 >UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q4F4_PROST Length = 372 Score = 148 bits (374), Expect = 4e-35, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 + + F LPQKW+S AVV PP + +++ +L VLD+ I + + FN FI +++S Sbjct: 57 IFVVFQLPQKWSSTAVVIPPSSEEIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSK 116 Query: 61 SLLEEYLRSSPYVMDQ--LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 E Y+RS+ Y + E + R + + + D + K++ S + Sbjct: 117 VNQEAYVRSTNYFKKLSEQVNSTDKENEQQRLVNTIISNNIGLKDQS---KEKNSTSSDI 173 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143 L+F APT EAQ +LSGY+ Y +T Sbjct: 174 ILTFVAPTPSEAQDLLSGYVRYTAT 198 >UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5 Length = 308 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 4/143 (2%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61 LI + LP+KWTS A++T + Q Q E KL++ D+ + D+ +LFI+ F S Sbjct: 62 LICYKLPEKWTSKAIITYIDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNV 121 Query: 62 LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121 L E+YL ++ Y +K+ + I+ K ++ + S K+++ Y +TLS Sbjct: 122 LKEKYLVNTSYFQKLIKDHPENRNQFMLDII----KNIHIEYSKSNKENDFKGYVFYTLS 177 Query: 122 FTAPTSEEAQTVLSGYIDYISTL 144 ++A T+++AQ +L+GYI+YIS + Sbjct: 178 YSADTAKDAQNLLNGYINYISAI 200 >UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia RepID=D1P4F6_9ENTR Length = 375 Score = 141 bits (356), Expect = 5e-33, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62 + LPQKWTS A++ P + +E+ + +L LD +I + +N FI +++S Sbjct: 59 VVKTLPQKWTSEAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVN 118 Query: 63 LEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 E+Y+RS+ Y L + K D + R + + + NA +K + S L Sbjct: 119 QEDYVRSTEYYQSLLAKLGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDDS---DIIL 175 Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143 SFTAPT+ EAQ +L+GYI Y ++ Sbjct: 176 SFTAPTAIEAQDLLNGYIRYTAS 198 >UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BC0B Length = 379 Score = 139 bits (349), Expect = 3e-32, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 5/140 (3%) Query: 6 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65 +LPQKW+S A+V PP + +E+ +L VLD+ I + FN F+ +++S E Sbjct: 69 LLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQES 128 Query: 66 YLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 123 Y+RS+ Y + + + K D + R + ++ + D + K++ S LSFT Sbjct: 129 YIRSTDYYHNLAEKIDPKDDVIAQQRLVNSIISNDIKIQDLS---KEKNSTSNDIVLSFT 185 Query: 124 APTSEEAQTVLSGYIDYIST 143 AP EAQ +L GYI Y ++ Sbjct: 186 APLPTEAQDLLEGYIRYSAS 205 >UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae RepID=Q7N0P7_PHOLL Length = 367 Score = 127 bits (320), Expect = 7e-29, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 81/146 (55%), Gaps = 7/146 (4%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 + + ++PQKW+S+A + P+ + Q L+ TKL VL+L + + +N F+ F S Sbjct: 55 FVAASLMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSR 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDN--ASKKKDEPSLYTSW 118 L EEYL ++ Y + + E+ H +V K V+DN +S K ++ Sbjct: 115 VLREEYLVNTEYFKNLVAESGD-----HSPLVKRKLIEKIVNDNISSSSKAEKDDENGET 169 Query: 119 TLSFTAPTSEEAQTVLSGYIDYISTL 144 L+F+A T+E+A +L+GYIDY+S++ Sbjct: 170 KLTFSAGTAEDAYNLLNGYIDYVSSV 195 >UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila RepID=Q8KNM2_AERHY Length = 362 Score = 65.9 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 11/142 (7%) Query: 4 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKKFQS 59 + + PQ W S + + PP + + LE +L + I ++ + F+ F S Sbjct: 58 ALLAPQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFNS 117 Query: 60 VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119 + ++L Y+ + A I + RA++ + + + T Sbjct: 118 FNNKRQFLIEKGYLDMDAEAAGITDDKGKRALLRKMVNGISAVALDAPSDN-------IT 170 Query: 120 LSFTAPTSEEAQTVLSGYIDYI 141 LSF A T+ EAQ L YI +I Sbjct: 171 LSFGAATATEAQQRLEQYIAFI 192 >UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia RepID=A1JMR4_YERE8 Length = 363 Score = 63.2 bits (152), Expect = 2e-09, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 23/140 (16%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62 + F P++WTS A+V+ + Q LE + L VL++D+ I + F K + S + Sbjct: 58 VVFFSPKEWTSYAIVSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKDM 117 Query: 63 LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122 L +Y+ + A K K ++ ++ K + + L++ Sbjct: 118 LSKYM----------------SKEKVNANNFAGLKGKNINSDSDVKGN-------YILTY 154 Query: 123 TAPTSEEAQTVLSGYIDYIS 142 ++ + V +GY++YI+ Sbjct: 155 SSNLEYGLKDVFTGYVNYIN 174 >UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UU8_MANSM Length = 396 Score = 62.0 bits (149), Expect = 5e-09, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 7/146 (4%) Query: 2 LISFILPQKWTSAAVVTPPEPVQ----WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57 + +F ++WTS A P+ + L + + K FN F Sbjct: 67 IYAFTAKEQWTSKATTIAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVAL 126 Query: 58 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117 S ++ E+ S + + E DE + + + +K V KK Sbjct: 127 FSNNMKREFFAQSKWFQNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALG--- 183 Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143 +SF A T +EAQ VL+ YI++I+ Sbjct: 184 INISFAAETPKEAQEVLTEYINFINA 209 >UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMI6_ACTSZ Length = 346 Score = 61.6 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 9/145 (6%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL----RVLDLDIKIDRTEAFNLFIKKF 57 + +F +KWTS A V P V + + ++ D+ + + F + Sbjct: 45 IYAFTATEKWTSTAEVIAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLA 104 Query: 58 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117 S + + S +++ DE + + AL+ + AV KK + Sbjct: 105 FSQNERRNFFSQSDEYKGLIQD--QDEKAQRKILSALTTEYTAVVRPDPKKNADMFGN-- 160 Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142 +SF+A T E AQ L+ ++D+I+ Sbjct: 161 -KISFSAQTPENAQKTLAQFVDFIN 184 >UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae RepID=A7JUL8_PASHA Length = 375 Score = 60.5 bits (145), Expect = 1e-08, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 9/146 (6%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57 + +F ++WTS A V P+ + E + LRV +D FN F + Sbjct: 44 IYAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLA 103 Query: 58 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117 QS E+ +S DE + LS + + +KK Sbjct: 104 QSQDTKNEFFITSNVYKTL--AEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGR-- 159 Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143 TLSF+A T EAQ L + +I++ Sbjct: 160 -TLSFSAETPMEAQDTLGKLVQFINS 184 >UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C7A7_9GAMM Length = 351 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 10/138 (7%) Query: 9 QKWTSAAVVTPPEPVQWQELEKSFTKL-RVLDL---DIKIDRTEAFNLFIKKFQSVSLLE 64 Q WTS A VT + + T L V+D+ + + N FI +F + + Sbjct: 51 QWWTSDATVTRGQYKDTANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITEFNAFDNKK 110 Query: 65 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 124 +L + + K+ +++ D + I ++K+ + DE + LSF A Sbjct: 111 AFLEQNSIIEQYAKDDGVNKEDKGKFIAFWAKKI------DASLNDEKKRPNVYKLSFEA 164 Query: 125 PTSEEAQTVLSGYIDYIS 142 +SE A +L Y +I+ Sbjct: 165 RSSEAAHDLLKAYSSFIT 182 >UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST Length = 378 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 8/144 (5%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQE---LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58 + +F ++WTS A V P+ + K + ++ + D F F + Sbjct: 43 IYAFTAKEQWTSKAEVIAPKVTDLGSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSE 102 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 S+ E+ S ++ DE + L+ + A+ KK+ + Sbjct: 103 SLDERNEFFVQSDVYKKLIE--GKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGR--- 157 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142 +SF A T E+AQ L +I + S Sbjct: 158 RISFLAETPEDAQLTLEKFIAFTS 181 >UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZRK1_PHOAS Length = 347 Score = 55.1 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 16/137 (11%) Query: 11 WTSAAVVTPPEPVQWQELEKSFTKLRVLD-----LDIKIDRTEAFNLFIKKFQSVSLLEE 65 WTS AV+T + + ++ L V + +D F+ F + + E Sbjct: 56 WTSTAVITTNKARDIRIFSENIDNLYVNSGVGGLVSQALDEKRLLRTFVNYFNAYNNKLE 115 Query: 66 YLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAP 125 +L + + K L R I + + +K ++LS+TA Sbjct: 116 FLEGNKSIKSDFINEKEKHDFLQRFIKRI-----------NSEKVGNDSQVLYSLSYTAT 164 Query: 126 TSEEAQTVLSGYIDYIS 142 +S ++ +LS YI++I+ Sbjct: 165 SSIKSHDLLSEYINFIN 181 >UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7N8_TOLAT Length = 372 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR---------TEAFNL 52 + +F + WTS AV P+ + + +LR I E F Sbjct: 55 IYAFTAEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTE 114 Query: 53 FIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112 F K+ S+ L E+ S Y + + K E D + + L EK V +K P Sbjct: 115 FQKQTNSIDLRREFWSQSDYYHNLVINIKS-EKDKEKKLDDLIEKNITVVPIDEQKVKFP 173 Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143 S +S + + A+ +L Y+D ++ Sbjct: 174 S------VSLSVNDATTAKELLIQYVDKLNA 198 >UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans RepID=Q9JRS3_AGGAC Length = 369 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 8/144 (5%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQE---LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58 + F ++WTS A + P + + ++K + ++ + D + F F + Sbjct: 40 IYVFTAKEQWTSKAEIIAPRITELGDYFLVKKEYARILGSEFDASMTANNLFGQFNLLSE 99 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 S+ +++ S + + E + + + L K A+ +KK + Sbjct: 100 SLDERKKFFEKSDFYKKE--SEGKSEREKLQILFDLMTKNIAIKKPDTKKYPDLIGN--- 154 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142 +SF A T EAQ VLS +I ++ Sbjct: 155 QISFYAETPIEAQNVLSKFISTVN 178 >UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174 Tax=Enterobacteriaceae RepID=WZZE_ECO57 Length = 348 Score = 52.8 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 19/150 (12%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRT-------EAFNLF 53 L +F Q+W+S A+ P LR LD+ + EA+ F Sbjct: 45 LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEF 104 Query: 54 IKKFQSVSLLEEYLRSSPYVMDQLK-EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112 + + S E+ + Y ++ +K D A++ + Sbjct: 105 VMQLASWDTRREFWLQTDYYKQRMVGNSKADA-----ALLDEMINNIQFIPGDFTRAVND 159 Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142 S + A T+ +A +L Y+ + S Sbjct: 160 S------VKLIAETAPDANNLLRQYVAFAS 183 >UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS Length = 346 Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 17/148 (11%) Query: 2 LISFILPQKWTSAAVVTPPEPVQW-------QELEKSFTKLRVLDLDIKIDRTEAFNLFI 54 + +F ++WT+ + P + Q + + LD F+ I Sbjct: 37 VYAFTAKEQWTAKTYIQAPRIAELGSYLKFHQAYARILNQ----PLDTNALANGLFSDLI 92 Query: 55 KKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114 +S ++L S+ Y + E D + + K + K Sbjct: 93 LIAESPDTKVKFLESTEYYKKE-TNNLSTEQDKKIWLAEQANKGLVITPPKEKGNT---- 147 Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYIS 142 + + + +A +++EA +L GY+ ++ Sbjct: 148 -SYYIIQASADSAQEAYKLLQGYLKNVN 174 >UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VHQ6_VIBSL Length = 374 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 21/148 (14%) Query: 11 WTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTEAFNLFIKK 56 W+S A +T E E+ K + + +LD +D F F+ Sbjct: 62 WSSEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQIIFQRFVDL 121 Query: 57 FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVD---DNASKKKDEPS 113 F S + + +L S E K D + + + + ++ +D+ Sbjct: 122 FNSSNNKKAFLDESSEFQ----EIKDDSFSSASEVTEDTTRKLYTEWFERISASLRDKKD 177 Query: 114 LYTSWTLSFTAPTSEEAQTVLSGYIDYI 141 + + L+F A T E + +LS YI + Sbjct: 178 TSSPYILTFQATTKESSFDLLSSYISFT 205 >UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65U41_MANSM Length = 260 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 15/140 (10%) Query: 4 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-LDIKIDR-TEAFNLFIKKFQSVS 61 S++ WT + + P + ++ ++L+ D + FN F + S Sbjct: 34 SYLAKNLWTVQSSLEKPALTELGNYYSLYSTYQLLNNEKANQDPTGDIFNRFKQLAGSYE 93 Query: 62 LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121 + + ++ Y +L D + + LS ++K +D NA+ + LS Sbjct: 94 HAKVFWENTDYYKQKL---TDDSQHDSQLLDQLSREIKLLDTNAATTQ----------LS 140 Query: 122 FTAPTSEEAQTVLSGYIDYI 141 + A+ +L+ YIDY Sbjct: 141 LELDNPKRARELLTEYIDYT 160 >UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZS4_9GAMM Length = 358 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 15/142 (10%) Query: 11 WTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTEAFNLFIKK 56 W+S+A +T +P ++ + + + +LD +D F FI Sbjct: 46 WSSSAKITKAQPQNLAAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDSKVLFQRFINA 105 Query: 57 FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116 F S + +L +S + K + A + + + + ++ D + Sbjct: 106 FNSTNNKRSFLDNSAEFQ-EFKSSMAVGSSDMSVDEARAFRAEWFNRISAFTADNKGPNS 164 Query: 117 SWTLSFTAPTSEEAQTVLSGYI 138 +T++F T E + +L+ YI Sbjct: 165 PYTINFQTMTKESSFELLAAYI 186 >UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas RepID=A1SRR6_PSYIN Length = 347 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 44 IDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDD 103 + + F FI F S + +L ++P + L+ +I A + + + +++ Sbjct: 77 FEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKGSAQESRQQYLIVLNN 136 Query: 104 NASK-KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141 +K S + LSF + T E + +L+ YI +I Sbjct: 137 WMNKINASLNSQTSELALSFRSATKESSAELLNEYILFI 175 >UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPK9_9PAST Length = 282 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 10/142 (7%) Query: 4 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR-VLDLDIKIDR-TEAFNLFIKKFQSVS 61 SF++ ++W + A V P + + V + F K+ S Sbjct: 37 SFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVSGKPTDTTPMDFVYREFKKQAGSYD 96 Query: 62 LLEEYLRSSPYVM-DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 ++ ++ R++ + Q E D+ +L R +L + + S+K + + Sbjct: 97 IVVDFWRNTDFYKQKQTGENVFDQQELERLANSLGFTPQQAINGLSEKIGD-------RI 149 Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142 S T + ++A +LS ++DY++ Sbjct: 150 SLTLGSPKQATELLSDFVDYVN 171 >UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA Length = 352 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 63/147 (42%), Gaps = 12/147 (8%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRV-----LDLDIKIDRTEAFNLFIK 55 L++S Q W S+A +T P+ + S +L L I+ + +N FI Sbjct: 42 LIVSIYSAQWWESSAEITKPQYSDYAVFISSADQLTTGSNPSESLKSIINIEKNYNSFIN 101 Query: 56 KFQSVSLLEEYLRSSPYVMD-QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114 S + ++L+ S + +++ ++ +A+ +EK+ ++ K Sbjct: 102 ILTSKTNKIDFLQQSNIIKSYFIRDGVKTDIQKDKALDLWAEKIIVKKESLILNK----- 156 Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYI 141 +S+ + A T +++ +L+ YI + Sbjct: 157 -SSYIVIAQANTLDDSFKLLNNYIKFT 182 >UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI Length = 379 Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 23/148 (15%) Query: 11 WTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTEAFNLFIKK 56 W+S A VT P +K + + L LD ID F F+++ Sbjct: 63 WSSKATVTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDPEVIFKRFLQE 122 Query: 57 FQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114 F + +++++ + KE + + L E++K V Sbjct: 123 FNANGTKRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGVPVGK-------KE 175 Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYIS 142 +TLSF + + + T+LS Y+ +++ Sbjct: 176 ENIFTLSFQSVDKDSSLTLLSQYVQFVN 203 >UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B0BR52_ACTPJ Length = 370 Score = 39.7 bits (91), Expect = 0.033, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 8/144 (5%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL---DLDIKIDRTEAFNLFIKKFQ 58 + +F +KWTS V P E + ++ + R E LF + Sbjct: 44 VYAFTAKEKWTSQTEVIAPRVTDISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVL 103 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 S + +++ +E+ L RA+ + + V +KK Sbjct: 104 SYDEAIAFFKTTDTYKKL--AETENEVGLQRAVAEFTTESLKVIKPDAKKDPNALGS--- 158 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142 ++ + T+ AQT L+ +I +IS Sbjct: 159 KIAISFDTALSAQTTLNDFICHIS 182 >UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH Length = 377 Score = 38.5 bits (88), Expect = 0.060, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 58/150 (38%), Gaps = 23/150 (15%) Query: 11 WTSAAVVTPPEPVQWQELEKSFTKLR-VLDL-------------DIKIDRTEAFNLFIKK 56 W++ A V+ P+ +++ + + + D+ D ID F F+++ Sbjct: 64 WSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDAEVIFKRFLQE 123 Query: 57 FQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114 F + ++ ++ ++ K+ K D L E++K V Sbjct: 124 FNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGVSIGE-------KE 176 Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYISTL 144 ++TLSF + + +L Y+ +++ + Sbjct: 177 DGAFTLSFQSVDKISSLALLREYVQFVNQI 206 >UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinobacillus minor RepID=C5S436_9PAST Length = 256 Score = 38.5 bits (88), Expect = 0.065, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 22/147 (14%) Query: 6 ILPQKWTSAAVVTPPEPVQW-------QELEKSFTKLRVLDLDI--KIDRTEAFNLFIKK 56 P +W ++A P+ + D+ ++ F K Sbjct: 25 FQPTQWQASAQFEHPQTAELGNYLTLFSTYHLISGDTAAADISKMEAKAAEASYTEFKKN 84 Query: 57 FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116 QS L ++L +S V Q K I E + + + K + + + Sbjct: 85 IQSQEKLAQFLTNSALVKAQAKIEGISEQAM------VQQLSKHFQFTSGNNQPD----- 133 Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIST 143 TLS T+ +++EA + Y+ Y++T Sbjct: 134 --TLSLTSFSTQEADNLFGEYLRYVNT 158 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10... 151 8e-36 UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers... 150 1e-35 UniRef50_P26266 Ferric enterobactin transport protein fepE n=158... 149 3e-35 UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini... 141 7e-33 UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T... 137 1e-31 UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter... 137 1e-31 UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T... 136 2e-31 UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr... 126 2e-28 UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide... 126 2e-28 UniRef50_C4K3Z7 Regulator of length of O-antigen component of li... 122 2e-27 UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep... 122 3e-27 UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei... 119 2e-26 UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T... 117 1e-25 UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C... 116 2e-25 UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 114 9e-25 UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En... 114 1e-24 UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1... 110 1e-23 UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete... 110 1e-23 UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 105 4e-22 UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom... 105 4e-22 UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba... 104 1e-21 UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T... 102 3e-21 UniRef50_A5KZS4 Regulator of length of O-antigen component of li... 98 9e-20 UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T... 94 1e-18 UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ... 91 1e-17 UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannhei... 90 2e-17 UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi... 88 7e-17 UniRef50_A1SRR6 Chain length determinant protein-like protein n=... 83 2e-15 Sequences not found previously or not previously below threshold: UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn... 77 2e-13 UniRef50_C9P0E2 Regulator of length of O-antigen component of li... 72 4e-12 UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0... 71 1e-11 UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re... 70 3e-11 UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1... 65 6e-10 UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph... 64 1e-09 UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T... 57 1e-07 UniRef50_A7JRK0 Lipopolysaccharide chain length determinant prot... 57 2e-07 UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteur... 51 2e-05 UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinob... 50 2e-05 UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon... 46 4e-04 UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinob... 44 0.001 UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni... 44 0.001 UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter... 42 0.008 UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n... 40 0.020 UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influe... 38 0.093 >UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia RepID=C4UHK4_YERRU Length = 384 Score = 151 bits (380), Expect = 8e-36, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 77/143 (53%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L++S+ILPQKWTS +++ P Q Q L+K L VLD+++ I + F + F S Sbjct: 58 LVVSYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQ 117 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 L E+YL ++ Y +K++ D ++ I + + K + Y + L Sbjct: 118 DLREQYLINTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKL 177 Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143 S++A T+ +A+ +L GYI+++++ Sbjct: 178 SYSASTAVDARDLLQGYINFVNS 200 >UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia RepID=A4TP85_YERPP Length = 383 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 77/144 (53%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L++S+ILPQKWTS A++ P Q Q L++ T L VLD+ + + + F + F S Sbjct: 58 LVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQ 117 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 L E+YL ++ Y +K D LD I + + + + K + + Y + L Sbjct: 118 DLREQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKL 177 Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144 S++A T +A+ +L G I+Y++T+ Sbjct: 178 SYSASTPTDARDLLQGSINYVNTI 201 >UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular organisms RepID=FEPE_ECOLI Length = 377 Score = 149 bits (375), Expect = 3e-35, Method: Composition-based stats. Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV Sbjct: 55 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL Sbjct: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174 Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144 SFTAPTSEEAQTVLSGYIDYISTL Sbjct: 175 SFTAPTSEEAQTVLSGYIDYISTL 198 >UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZ47_YERIN Length = 372 Score = 141 bits (355), Expect = 7e-33, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 69/141 (48%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L++ F LPQKWTS++V+ P + L+ +L+V +D ID +++ S Sbjct: 55 LIVGFFLPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSR 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 L + +L+ + Y+ +K+ DE + +S + NA+ K + L Sbjct: 115 ILRDAFLQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRL 174 Query: 121 SFTAPTSEEAQTVLSGYIDYI 141 F+A T + A+ +L GY++Y+ Sbjct: 175 KFSAQTPDSAKDLLQGYMNYV 195 >UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter RepID=C9XZM2_CROTZ Length = 377 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 65/142 (45%), Positives = 95/142 (66%), Gaps = 1/142 (0%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L ++F+LPQKWTS AVV+ PE Q EL++ L+VLD+D ID N+F+KKF S Sbjct: 55 LALAFLLPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSR 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 +L E++LR+SP+V Q+KEA+ D L RA+ ++++ + N + K S Y+SWTL Sbjct: 115 ALQEKFLRTSPWVQAQVKEAQSDTESLERAVTLVAQR-IKMTSNDNPKAPTASPYSSWTL 173 Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142 SFTAP +++AQ VL YI+Y + Sbjct: 174 SFTAPKAQDAQRVLKEYINYAA 195 >UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae RepID=B4F1Q0_PROMH Length = 372 Score = 137 bits (344), Expect = 1e-31, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 2/144 (1%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 ++ LPQKWTS A +T P + ++L + L ++D+D ++ + + FI + S Sbjct: 57 FTVASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSR 116 Query: 61 SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119 L EEYL ++ Y + L + LD + I + K + + K + Sbjct: 117 VLREEYLVNTDYYKNLLAKMDDPTPLDKRKLIETIVTKDINLKASD-SKNSDEEFSGEIN 175 Query: 120 LSFTAPTSEEAQTVLSGYIDYIST 143 LSFTAPTSEEA +LSGYI +IST Sbjct: 176 LSFTAPTSEEAYDLLSGYIRFIST 199 >UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella RepID=C5BCN1_EDWI9 Length = 357 Score = 136 bits (342), Expect = 2e-31, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 + +LPQKWTS A + P + + + +L +LD+ + F++ ++S Sbjct: 43 FAVKTLLPQKWTSYAELIPAQARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQ 102 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 + EY+ + Y A D L R + +L++K + ++ + E YT + L Sbjct: 103 IVRREYIAQTDYYKTLAA-ALSDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRL 161 Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143 +A +S+EA +L GYID+++ Sbjct: 162 GVSARSSQEAHALLQGYIDFVAA 184 >UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia RepID=D1P4F6_9ENTR Length = 375 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62 + LPQKWTS A++ P + +E+ + +L LD +I + +N FI +++S Sbjct: 59 VVKTLPQKWTSEAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVN 118 Query: 63 LEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 E+Y+RS+ Y L + K D + R + + + NA +K + S L Sbjct: 119 QEDYVRSTEYYQSLLAKLGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDDS---DIIL 175 Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143 SFTAPT+ EAQ +L+GYI Y ++ Sbjct: 176 SFTAPTAIEAQDLLNGYIRYTAS 198 >UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q4F4_PROST Length = 372 Score = 126 bits (316), Expect = 2e-28, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 + + F LPQKW+S AVV PP + +++ +L VLD+ I + + FN FI +++S Sbjct: 57 IFVVFQLPQKWSSTAVVIPPSSEEIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSK 116 Query: 61 SLLEEYLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 E Y+RS+ Y + + E + R + + + D + +K S + Sbjct: 117 VNQEAYVRSTNYFKKLSEQVNSTDKENEQQRLVNTIISNNIGLKDQSKEKN---STSSDI 173 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143 L+F APT EAQ +LSGY+ Y +T Sbjct: 174 ILTFVAPTPSEAQDLLSGYVRYTAT 198 >UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5 Length = 308 Score = 122 bits (307), Expect = 2e-27, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 4/143 (2%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61 LI + LP+KWTS A++T + Q Q E KL++ D+ + D+ +LFI+ F S Sbjct: 62 LICYKLPEKWTSKAIITYIDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNV 121 Query: 62 LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121 L E+YL ++ Y +K+ + I K ++ + S K+++ Y +TLS Sbjct: 122 LKEKYLVNTSYFQKLIKDHPENRNQFMLDI----IKNIHIEYSKSNKENDFKGYVFYTLS 177 Query: 122 FTAPTSEEAQTVLSGYIDYISTL 144 ++A T+++AQ +L+GYI+YIS + Sbjct: 178 YSADTAKDAQNLLNGYINYISAI 200 >UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BC0B Length = 379 Score = 122 bits (306), Expect = 3e-27, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 5/140 (3%) Query: 6 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65 +LPQKW+S A+V PP + +E+ +L VLD+ I + FN F+ +++S E Sbjct: 69 LLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQES 128 Query: 66 YLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 123 Y+RS+ Y + + + K D + R + ++ + D + +K S LSFT Sbjct: 129 YIRSTDYYHNLAEKIDPKDDVIAQQRLVNSIISNDIKIQDLSKEKN---STSNDIVLSFT 185 Query: 124 APTSEEAQTVLSGYIDYIST 143 AP EAQ +L GYI Y ++ Sbjct: 186 APLPTEAQDLLEGYIRYSAS 205 >UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UU8_MANSM Length = 396 Score = 119 bits (299), Expect = 2e-26, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 7/146 (4%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57 + +F ++WTS A P+ + L + + K FN F Sbjct: 67 IYAFTAKEQWTSKATTIAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVAL 126 Query: 58 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117 S ++ E+ S + + E DE + + + +K V KK Sbjct: 127 FSNNMKREFFAQSKWFQNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALG--- 183 Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143 +SF A T +EAQ VL+ YI++I+ Sbjct: 184 INISFAAETPKEAQEVLTEYINFINA 209 >UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae RepID=A7JUL8_PASHA Length = 375 Score = 117 bits (292), Expect = 1e-25, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 9/146 (6%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57 + +F ++WTS A V P+ + E + LRV +D FN F + Sbjct: 44 IYAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLA 103 Query: 58 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117 QS E+ +S DE + LS + + +KK Sbjct: 104 QSQDTKNEFFITSNVYKTLA--EGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGR-- 159 Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143 TLSF+A T EAQ L + +I++ Sbjct: 160 -TLSFSAETPMEAQDTLGKLVQFINS 184 >UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST Length = 378 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58 + +F ++WTS A V P+ K + ++ + D F F + Sbjct: 43 IYAFTAKEQWTSKAEVIAPKVTDLGSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSE 102 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 S+ E+ S ++ DE + L+ + A+ KK+ + Sbjct: 103 SLDERNEFFVQSDVYKKLIE--GKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGR--- 157 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142 +SF A T E+AQ L +I + S Sbjct: 158 RISFLAETPEDAQLTLEKFIAFTS 181 >UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMI6_ACTSZ Length = 346 Score = 114 bits (285), Expect = 9e-25, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 9/145 (6%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL----RVLDLDIKIDRTEAFNLFIKKF 57 + +F +KWTS A V P V + + ++ D+ + + F + Sbjct: 45 IYAFTATEKWTSTAEVIAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLA 104 Query: 58 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117 S + + S +++ DE + + AL+ + AV KK + Sbjct: 105 FSQNERRNFFSQSDEYKGLIQD--QDEKAQRKILSALTTEYTAVVRPDPKKNADMFGN-- 160 Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142 +SF+A T E AQ L+ ++D+I+ Sbjct: 161 -KISFSAQTPENAQKTLAQFVDFIN 184 >UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae RepID=Q7N0P7_PHOLL Length = 367 Score = 114 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 5/145 (3%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 + + ++PQKW+S+A + P+ + Q L+ TKL VL+L + + +N F+ F S Sbjct: 55 FVAASLMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSR 114 Query: 61 SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119 L EEYL ++ Y + + E+ L + I + + +S K ++ Sbjct: 115 VLREEYLVNTEYFKNLVAESGDHSPLVKRKLIEKIVNDNIS----SSSKAEKDDENGETK 170 Query: 120 LSFTAPTSEEAQTVLSGYIDYISTL 144 L+F+A T+E+A +L+GYIDY+S++ Sbjct: 171 LTFSAGTAEDAYNLLNGYIDYVSSV 195 >UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174 Tax=Enterobacteriaceae RepID=WZZE_ECO57 Length = 348 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 19/150 (12%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTE-------AFNLF 53 L +F Q+W+S A+ P LR LD+ + + A+ F Sbjct: 45 LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEF 104 Query: 54 IKKFQSVSLLEEYLRSSPYVMDQLK-EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112 + + S E+ + Y ++ +K D A++ + Sbjct: 105 VMQLASWDTRREFWLQTDYYKQRMVGNSKADA-----ALLDEMINNIQFIPGDFTRAVND 159 Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142 S + A T+ +A +L Y+ + S Sbjct: 160 S------VKLIAETAPDANNLLRQYVAFAS 183 >UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans RepID=Q9JRS3_AGGAC Length = 369 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 8/144 (5%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58 + F ++WTS A + P + + +K + ++ + D + F F + Sbjct: 40 IYVFTAKEQWTSKAEIIAPRITELGDYFLVKKEYARILGSEFDASMTANNLFGQFNLLSE 99 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 S+ +++ S + + E + + + L K A+ +KK + Sbjct: 100 SLDERKKFFEKSDFYKK--ESEGKSEREKLQILFDLMTKNIAIKKPDTKKYPDLIGN--- 154 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142 +SF A T EAQ VLS +I ++ Sbjct: 155 QISFYAETPIEAQNVLSKFISTVN 178 >UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7N8_TOLAT Length = 372 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR---------TEAFNL 52 + +F + WTS AV P+ + + +LR I E F Sbjct: 55 IYAFTAEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTE 114 Query: 53 FIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112 F K+ S+ L E+ S Y + + K E D + + L EK V +K P Sbjct: 115 FQKQTNSIDLRREFWSQSDYYHNLVINIKS-EKDKEKKLDDLIEKNITVVPIDEQKVKFP 173 Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143 S +S + + A+ +L Y+D ++ Sbjct: 174 S------VSLSVNDATTAKELLIQYVDKLNA 198 >UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila RepID=Q8KNM2_AERHY Length = 362 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 11/143 (7%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKKFQ 58 + + PQ W S + + PP + + LE +L + I ++ + F+ F Sbjct: 57 YALLAPQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFN 116 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 S + ++L Y+ + A I + RA++ + + + Sbjct: 117 SFNNKRQFLIEKGYLDMDAEAAGITDDKGKRALLRKMVNGISAVALDAPSDN-------I 169 Query: 119 TLSFTAPTSEEAQTVLSGYIDYI 141 TLSF A T+ EAQ L YI +I Sbjct: 170 TLSFGAATATEAQQRLEQYIAFI 192 >UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C7A7_9GAMM Length = 351 Score = 104 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 10/146 (6%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR----VLDLDIKIDRTEAFNLFIKK 56 ++ + Q WTS A VT + + T L V ++ + N FI + Sbjct: 43 IVYALTAQQWWTSDATVTRGQYKDTANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITE 102 Query: 57 FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116 F + + +L + + K+ +++ D + I ++K + DE Sbjct: 103 FNAFDNKKAFLEQNSIIEQYAKDDGVNKEDKGKFIAFWAKK------IDASLNDEKKRPN 156 Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIS 142 + LSF A +SE A +L Y +I+ Sbjct: 157 VYKLSFEARSSEAAHDLLKAYSSFIT 182 >UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS Length = 346 Score = 102 bits (254), Expect = 3e-21, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 9/144 (6%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58 + +F ++WT+ + P + +++ ++ LD F+ I + Sbjct: 37 VYAFTAKEQWTAKTYIQAPRIAELGSYLKFHQAYARILNQPLDTNALANGLFSDLILIAE 96 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 S ++L S+ Y + E D + + K + K + + Sbjct: 97 SPDTKVKFLESTEYYKKE-TNNLSTEQDKKIWLAEQANKGLVITPPKEKGNT-----SYY 150 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142 + +A +++EA +L GY+ ++ Sbjct: 151 IIQASADSAQEAYKLLQGYLKNVN 174 >UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZS4_9GAMM Length = 358 Score = 97.9 bits (242), Expect = 9e-20, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 15/152 (9%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46 + + + + W+S+A +T +P ++ + + + +LD +D Sbjct: 36 IAFALLAQEWWSSSAKITKAQPQNLAAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDS 95 Query: 47 TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 106 F FI F S + +L +S + K + A + + + + ++ Sbjct: 96 KVLFQRFINAFNSTNNKRSFLDNSAEFQ-EFKSSMAVGSSDMSVDEARAFRAEWFNRISA 154 Query: 107 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 138 D + +T++F T E + +L+ YI Sbjct: 155 FTADNKGPNSPYTINFQTMTKESSFELLAAYI 186 >UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZRK1_PHOAS Length = 347 Score = 94.4 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 16/145 (11%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-----LDIKIDRTEAFNLFIKKF 57 ++ WTS AV+T + + ++ L V + +D F+ F Sbjct: 48 YAYYAQSWWTSTAVITTNKARDIRIFSENIDNLYVNSGVGGLVSQALDEKRLLRTFVNYF 107 Query: 58 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117 + + E+L + + K L R I + + +K Sbjct: 108 NAYNNKLEFLEGNKSIKSDFINEKEKHDFLQRFIKRI-----------NSEKVGNDSQVL 156 Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142 ++LS+TA +S ++ +LS YI++I+ Sbjct: 157 YSLSYTATSSIKSHDLLSEYINFIN 181 >UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VHQ6_VIBSL Length = 374 Score = 91.0 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 15/153 (9%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTE 48 + + + W+S A +T E E+ K + + +LD +D Sbjct: 54 FALLAQEWWSSEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQI 113 Query: 49 AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKK 108 F F+ F S + + +L S ++K+ + + ++ Sbjct: 114 IFQRFVDLFNSSNNKKAFLDESSEFQ-EIKDDSFSSASEVTEDTTRKLYTEWFERISASL 172 Query: 109 KDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141 +D+ + + L+F A T E + +LS YI + Sbjct: 173 RDKKDTSSPYILTFQATTKESSFDLLSSYISFT 205 >UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65U41_MANSM Length = 260 Score = 89.8 bits (221), Expect = 2e-17, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 15/140 (10%) Query: 4 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-LDIKIDR-TEAFNLFIKKFQSVS 61 S++ WT + + P + ++ ++L+ D + FN F + S Sbjct: 34 SYLAKNLWTVQSSLEKPALTELGNYYSLYSTYQLLNNEKANQDPTGDIFNRFKQLAGSYE 93 Query: 62 LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121 + + ++ Y +L D + + LS ++K +D NA+ + LS Sbjct: 94 HAKVFWENTDYYKQKL---TDDSQHDSQLLDQLSREIKLLDTNAATTQ----------LS 140 Query: 122 FTAPTSEEAQTVLSGYIDYI 141 + A+ +L+ YIDY Sbjct: 141 LELDNPKRARELLTEYIDYT 160 >UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia RepID=A1JMR4_YERE8 Length = 363 Score = 88.3 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 23/140 (16%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62 + F P++WTS A+V+ + Q LE + L VL++D+ I + F K + S + Sbjct: 58 VVFFSPKEWTSYAIVSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKDM 117 Query: 63 LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122 L +Y+ + A K K ++ ++ K + + L++ Sbjct: 118 LSKYM----------------SKEKVNANNFAGLKGKNINSDSDVKGN-------YILTY 154 Query: 123 TAPTSEEAQTVLSGYIDYIS 142 ++ + V +GY++YI+ Sbjct: 155 SSNLEYGLKDVFTGYVNYIN 174 >UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas RepID=A1SRR6_PSYIN Length = 347 Score = 83.2 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 24/163 (14%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----------------------D 39 + + W + V P+ L K+ + + Sbjct: 13 YALNAQEWWVAKGKVIAPQVNDVAALYAQSNKVSAILNSNDLLNSNSNNNGQDTKQVSKE 72 Query: 40 LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMK 99 L + + F FI F S + +L ++P + L+ +I A + + + Sbjct: 73 LVDLFEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKGSAQESRQQYLI 132 Query: 100 AVDDNASK-KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141 +++ +K S + LSF + T E + +L+ YI +I Sbjct: 133 VLNNWMNKINASLNSQTSELALSFRSATKESSAELLNEYILFI 175 >UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B0BR52_ACTPJ Length = 370 Score = 76.7 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 8/144 (5%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58 + +F +KWTS V P E K + + + R E LF + Sbjct: 44 VYAFTAKEKWTSQTEVIAPRVTDISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVL 103 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 S + +++ +E+ L RA+ + + V +KK + Sbjct: 104 SYDEAIAFFKTTDTYKKLA--ETENEVGLQRAVAEFTTESLKVIKPDAKKDPNALG-SKI 160 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142 +SF T+ AQT L+ +I +IS Sbjct: 161 AISF--DTALSAQTTLNDFICHIS 182 >UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0E2_9VIBR Length = 383 Score = 72.5 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 19/159 (11%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46 ++ + + W+S A VT +P ++ + + + +LD +D Sbjct: 56 VVFALNSQEWWSSKAKVTKAQPQDIAAYQQQVKQFQPVFDIYQDDGTVLVSEELDNLVDT 115 Query: 47 TEAFNLFIKKFQSVSLLEEYLRSSPYVM----DQLKEAKIDELDLHRAIVALSEKMKAVD 102 F F+ F S + ++L SS E + + A V Sbjct: 116 EVLFKRFVDAFNSSNNKRDFLDSSSEFRAFKAKLETETETETETEAEAEVTRQLYAAWFQ 175 Query: 103 DNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141 + K+D + + +S + T E + ++L+ YI I Sbjct: 176 KI-TVKQDGIGKQSPYDISLQSTTKESSYSLLNEYIGII 213 >UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI Length = 379 Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 23/158 (14%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46 + S + W+S A VT P +K + + L LD ID Sbjct: 53 ITYSLTAQEWWSSKATVTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDP 112 Query: 47 TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104 F F+++F + +++++ + KE + + L E++K V Sbjct: 113 EVIFKRFLQEFNANGTKRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGV--- 169 Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142 +TLSF + + + T+LS Y+ +++ Sbjct: 170 ----PVGKKEENIFTLSFQSVDKDSSLTLLSQYVQFVN 203 >UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH Length = 377 Score = 69.8 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 23/160 (14%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46 + + + + W++ A V+ P+ +++ + + L LD ID Sbjct: 54 ITYALTVQEWWSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDA 113 Query: 47 TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104 F F+++F + ++ ++ ++ K+ K D L E++K V Sbjct: 114 EVIFKRFLQEFNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGV--- 170 Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 144 ++TLSF + + +L Y+ +++ + Sbjct: 171 ----SIGEKEDGAFTLSFQSVDKISSLALLREYVQFVNQI 206 >UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPK9_9PAST Length = 282 Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 8/144 (5%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR--TEAFNLFIKKFQ 58 SF++ ++W + A V P + + + + F K+ Sbjct: 34 YAASFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVSGKPTDTTPMDFVYREFKKQAG 93 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118 S ++ ++ R++ + K+ + D + + S Sbjct: 94 SYDIVVDFWRNTDFYKQ--KQTGENVFDQQEL--ERLANSLGFTPQQAI--NGLSEKIGD 147 Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142 +S T + ++A +LS ++DY++ Sbjct: 148 RISLTLGSPKQATELLSDFVDYVN 171 >UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z8B9_PHOPR Length = 349 Score = 64.0 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 17/146 (11%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----DLDIKIDRTEAFNLFIKK 56 + +F + W+S+ ++T L + L ++ L+ + F FI + Sbjct: 43 IYAFNSQEWWSSSEIITEANYNDLSSLRNDVSPLFIVAAKTEKLEKIFSPNKIFIDFINE 102 Query: 57 FQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 115 + E++ S+ + ++ K +E + + S K+K + K Sbjct: 103 YNKPLTKSEFILSNDLLKIKMSNQKLEEEQQKNAFVKFWSNKIKYKKQGDNFK------- 155 Query: 116 TSWTLSFTAPTSEEAQTVLSGYIDYI 141 L F + ++EE+Q +LS Y ++ Sbjct: 156 ----LIFESNSAEESQLLLSQYSKFV 177 >UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA Length = 352 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 12/147 (8%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRV-----LDLDIKIDRTEAFNLFIK 55 L++S Q W S+A +T P+ + S +L L I+ + +N FI Sbjct: 42 LIVSIYSAQWWESSAEITKPQYSDYAVFISSADQLTTGSNPSESLKSIINIEKNYNSFIN 101 Query: 56 KFQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114 S + ++L+ S + ++ +A+ +EK+ KK+ Sbjct: 102 ILTSKTNKIDFLQQSNIIKSYFIRDGVKTDIQKDKALDLWAEKIIV------KKESLILN 155 Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYI 141 +S+ + A T +++ +L+ YI + Sbjct: 156 KSSYIVIAQANTLDDSFKLLNNYIKFT 182 >UniRef50_A7JRK0 Lipopolysaccharide chain length determinant protein n=2 Tax=Mannheimia haemolytica RepID=A7JRK0_PASHA Length = 270 Score = 57.1 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 21/150 (14%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDI---------KIDRTEAFNLF 53 +S+ P+KW A P + L+ + + + + F Sbjct: 25 LSYTQPEKWKVTAQFEQPTIPDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEF 84 Query: 54 IKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS 113 + S LL+ YL + V + + AK + A + + + + D Sbjct: 85 KRNLTSADLLQAYLLQTEAVKLKAQVAKKSP----AVVAAELVEQFRFEKDMATSADN-- 138 Query: 114 LYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143 +S A +EEAQ +L+ +I ++T Sbjct: 139 ------VSLIAENAEEAQKLLADFIPLVNT 162 >UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CNG7_PASMU Length = 277 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 13/141 (9%) Query: 4 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI--DRTEAFNLFIKKFQSVS 61 S++ + W + A V+ P+ + + + + + F+K+ S Sbjct: 36 SYLKSKTWLAEAHVSAPDIALLGNYYALSSTYQFIKNKENQRQETEIVYQEFLKQLMSEE 95 Query: 62 LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121 ++ + ++ Y K+ D +DL A++ K + + ++S Sbjct: 96 MIRRFWENTEYYKQ--KQTGEDHIDL--ALLEKLTKAIKFKSAQTLDVAD-------SVS 144 Query: 122 FTAPTSEEAQTVLSGYIDYIS 142 + A +LS +ID ++ Sbjct: 145 LALENPKLATELLSSFIDQVN 165 >UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinobacillus minor RepID=C5S436_9PAST Length = 256 Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 22/152 (14%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID---------RTEAFN 51 + P +W ++A P+ + F+ ++ D ++ Sbjct: 20 FAGAKFQPTQWQASAQFEHPQTAELGNYLTLFSTYHLISGDTAAADISKMEAKAAEASYT 79 Query: 52 LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 111 F K QS L ++L +S V Q K I E + + + + + Sbjct: 80 EFKKNIQSQEKLAQFLTNSALVKAQAKIEGISEQAMVQQLSKHFQFTSGNNQPD------ 133 Query: 112 PSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143 TLS T+ +++EA + Y+ Y++T Sbjct: 134 -------TLSLTSFSTQEADNLFGEYLRYVNT 158 >UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica RepID=WZZB_SALTY Length = 327 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 31/137 (22%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62 I +KWTS A++T P+ Q + L + +E FI +F S Sbjct: 48 YLMIAKEKWTSTAIITQPDAAQVATYTNALNVLYGGNAPKI---SEVQANFISRFSS--- 101 Query: 63 LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122 + L E ++ + + + S K +A+ ++S+ Sbjct: 102 --AF--------SALSEVLDNQKEREKLTIEQSVKGQAL---------------PLSVSY 136 Query: 123 TAPTSEEAQTVLSGYID 139 + T+E AQ L+ YI Sbjct: 137 VSTTAEGAQRRLAEYIQ 153 >UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinobacillus pleuropneumoniae RepID=A3N2K1_ACTP2 Length = 292 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 36/167 (21%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD----LDIKI------------ 44 +S + Q W + A PP+ F+ L+ + + Sbjct: 21 FGLSSLDTQTWKATAEFEPPKVSTLGNYYTLFSTYTFLNGGDGVSYNVIADDKGSLSLAP 80 Query: 45 -------DRTEA--FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALS 95 D +N F + S +L E+L + V + + L ++ Sbjct: 81 EIGRKAEDSATLGSYNEFKRNLISTDVLVEFLTQTETVKLKAQ------LTHQPIVMTAQ 134 Query: 96 EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142 + A+ K +LS + EEA +L+ +I + + Sbjct: 135 SLAEQFVFQAATK-----TQPFDSLSVRSANPEEAYKLLNDFIAFAN 176 >UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJF5_9GAMM Length = 353 Score = 44.0 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 15/144 (10%) Query: 2 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR----TEAFNLFIKKF 57 SF+ + S+AV+ P E+ K T L+ + T+ F FI Sbjct: 44 AYSFLSTPIYQSSAVLASPSESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISAL 103 Query: 58 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117 S +L + K + + Sbjct: 104 NSNRYKNSFL-----------SKPELLDHFRNDNTTQLQARKEFNRALKVTLPDTEEINH 152 Query: 118 WTLSFTAPTSEEAQTVLSGYIDYI 141 T+S + E + + L+ YI + Sbjct: 153 ITISLRTKSPELSSSWLNEYISFA 176 >UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae RepID=WZZB3_ECOLX Length = 325 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 33/138 (23%) Query: 3 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDL-DIKIDRTEAFNLFIKKFQSVS 61 + +KWTS A++T P+ Q + + + + F F + Sbjct: 48 YLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSA-- 105 Query: 62 LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121 L E ++ + + + S K + + T+S Sbjct: 106 ---------------LAETLDNQEEPEKLTIEPSVKNQQL---------------PLTVS 135 Query: 122 FTAPTSEEAQTVLSGYID 139 + T+E AQ L+ YI Sbjct: 136 YVGQTAEGAQMKLAQYIQ 153 >UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas entomophila L48 RepID=Q1ID96_PSEE4 Length = 346 Score = 40.1 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 47/137 (34%), Gaps = 13/137 (9%) Query: 1 LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60 L+ F +P ++ + PP +L L L I + ++ +++ S Sbjct: 42 LVYVFYVPSRYEAKLFTIPPTQNDIAQLNYGRGGSAELPL---ISVGDVYSSYVRNLNSE 98 Query: 61 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120 S+ E+ + Y ++ K L + ++ + + + Sbjct: 99 SMRMEFF-NDVYFPSLAEKQKT---SLRSDLYRQFFAALSI------LQGGKDQSDRYLI 148 Query: 121 SFTAPTSEEAQTVLSGY 137 + ++ + EEA + Y Sbjct: 149 TASSSSPEEAAKWVKQY 165 >UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influenzae RepID=A4NGY6_HAEIN Length = 136 Score = 38.2 bits (87), Expect = 0.093, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 9/114 (7%) Query: 8 PQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI---------DRTEAFNLFIKKFQ 58 P KW A P+ + F+ ++ D A + F K Sbjct: 22 PTKWQVRAQFEAPKINELGNYFSLFSTYSLVSGDADTVDMVKIERKATDSANHEFTKILT 81 Query: 59 SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112 S + L +L S +V + K + E +S +++ Sbjct: 82 SSAQLMAFLNQSDFVKARAKVENETIQQIASHFKFSQENNLNQLILSSFDREDM 135 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.129 0.318 Lambda K H 0.267 0.0393 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 655,494,308 Number of Sequences: 3077464 Number of extensions: 17412452 Number of successful extensions: 86340 Number of sequences better than 1.0e-01: 54 Number of HSP's better than 0.1 without gapping: 59 Number of HSP's successfully gapped in prelim test: 51 Number of HSP's that attempted gapping in prelim test: 86171 Number of HSP's gapped (non-prelim): 114 length of query: 144 length of database: 1,040,396,356 effective HSP length: 108 effective length of query: 36 effective length of database: 708,030,244 effective search space: 25489088784 effective search space used: 25489088784 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 87 (38.2 bits)