BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (144 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P26266 Ferric enterobactin transport protein fepE n=158...   292   2e-78
UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T...   125   3e-28
UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter...    83   2e-15
UniRef50_C4K3Z7 Regulator of length of O-antigen component of li...    80   3e-14
UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers...    79   5e-14
UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10...    77   2e-13
UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide...    75   9e-13
UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr...    72   5e-12
UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep...    71   9e-12
UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En...    64   2e-09
UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T...    62   8e-09
UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini...    60   2e-08
UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom...    40   0.023

>UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular
           organisms RepID=FEPE_ECOLI
          Length = 377

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV
Sbjct: 55  LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL
Sbjct: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           SFTAPTSEEAQTVLSGYIDYISTL
Sbjct: 175 SFTAPTSEEAQTVLSGYIDYISTL 198


>UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter
           RepID=C9XZM2_CROTZ
          Length = 377

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 96/140 (68%), Gaps = 1/140 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L ++F+LPQKWTS AVV+ PE  Q  EL++    L+VLD+D  ID     N+F+KKF S 
Sbjct: 55  LALAFLLPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           +L E++LR+SP+V  Q+KEA+ D   L RA+  +++++K +  N + K    S Y+SWTL
Sbjct: 115 ALQEKFLRTSPWVQAQVKEAQSDTESLERAVTLVAQRIK-MTSNDNPKAPTASPYSSWTL 173

Query: 121 SFTAPTSEEAQTVLSGYIDY 140
           SFTAP +++AQ VL  YI+Y
Sbjct: 174 SFTAPKAQDAQRVLKEYINY 193


>UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae
           RepID=B4F1Q0_PROMH
          Length = 372

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 12/147 (8%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           ++  LPQKWTS A +T P   + ++L  +   L ++D+D  ++ +  +  FI  + S  L
Sbjct: 59  VASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSRVL 118

Query: 63  LEEYLRSSPYVMDQLKEAKIDE---LDLHRAIVALSEK---MKAVDDNASKKKDEPSLYT 116
            EEYL ++ Y  + L  AK+D+   LD  + I  +  K   +KA D   SK  DE     
Sbjct: 119 REEYLVNTDYYKNLL--AKMDDPTPLDKRKLIETIVTKDINLKASD---SKNSDE-EFSG 172

Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIST 143
              LSFTAPTSEEA  +LSGYI +IST
Sbjct: 173 EINLSFTAPTSEEAYDLLSGYIRFIST 199


>UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5
          Length = 308

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 4/143 (2%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
           LI + LP+KWTS A++T  +  Q Q  E    KL++ D+ +  D+    +LFI+ F S  
Sbjct: 62  LICYKLPEKWTSKAIITYIDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNV 121

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           L E+YL ++ Y    +K+   +       I+    K   ++ + S K+++   Y  +TLS
Sbjct: 122 LKEKYLVNTSYFQKLIKDHPENRNQFMLDII----KNIHIEYSKSNKENDFKGYVFYTLS 177

Query: 122 FTAPTSEEAQTVLSGYIDYISTL 144
           ++A T+++AQ +L+GYI+YIS +
Sbjct: 178 YSADTAKDAQNLLNGYINYISAI 200


>UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia
           RepID=A4TP85_YERPP
          Length = 383

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 4/146 (2%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS A++  P   Q Q L++  T L VLD+ + +      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVA--LSEKMKAVDDNASKKKDEPSLYTSW 118
            L E+YL ++ Y    +K    D LD  RA++   ++E + +V+    K + E   Y  +
Sbjct: 118 DLREQYLVNTNYFKRLMKNNPEDGLD-KRALIERIVNENISSVNPLKDKTEGENE-YRYY 175

Query: 119 TLSFTAPTSEEAQTVLSGYIDYISTL 144
            LS++A T  +A+ +L G I+Y++T+
Sbjct: 176 KLSYSASTPTDARDLLQGSINYVNTI 201


>UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia
           RepID=C4UHK4_YERRU
          Length = 384

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 85/145 (58%), Gaps = 4/145 (2%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS +++ P    Q Q L+K    L VLD+++ I      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVA--LSEKMKAVDDNASKKKDEPSLYTSW 118
            L E+YL ++ Y    +K++  D ++  RA++   ++  + +++    K  ++   Y  +
Sbjct: 118 DLREQYLINTDYFKQMMKDSPEDAIE-RRAVIENIVNNSIGSINPIKDKSGNDNE-YRYY 175

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            LS++A T+ +A+ +L GYI+++++
Sbjct: 176 KLSYSASTAVDARDLLQGYINFVNS 200


>UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q4F4_PROST
          Length = 372

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           + + F LPQKW+S AVV PP   + +++     +L VLD+ I +   + FN FI +++S 
Sbjct: 57  IFVVFQLPQKWSSTAVVIPPSSEEIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSK 116

Query: 61  SLLEEYLRSSPYV--MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
              E Y+RS+ Y   + +   +   E +  R +  +      + D +   K++ S  +  
Sbjct: 117 VNQEAYVRSTNYFKKLSEQVNSTDKENEQQRLVNTIISNNIGLKDQS---KEKNSTSSDI 173

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            L+F APT  EAQ +LSGY+ Y +T
Sbjct: 174 ILTFVAPTPSEAQDLLSGYVRYTAT 198


>UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia
           RepID=D1P4F6_9ENTR
          Length = 375

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 11/142 (7%)

Query: 7   LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 66
           LPQKWTS A++  P   + +E+ +   +L  LD +I +     +N FI +++S    E+Y
Sbjct: 63  LPQKWTSEAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVNQEDY 122

Query: 67  LRSSPYVMDQL-----KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           +RS+ Y    L     K    +E  L   I++ S K+K    NA +K  + S      LS
Sbjct: 123 VRSTEYYQSLLAKLGDKNDVQEEQRLVNRIISDSIKLKY---NAKEKDSDDS---DIILS 176

Query: 122 FTAPTSEEAQTVLSGYIDYIST 143
           FTAPT+ EAQ +L+GYI Y ++
Sbjct: 177 FTAPTAIEAQDLLNGYIRYTAS 198


>UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia
           rettgeri DSM 1131 RepID=UPI000197BC0B
          Length = 379

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 9/139 (6%)

Query: 6   ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65
           +LPQKW+S A+V PP   + +E+     +L VLD+ I +     FN F+ +++S    E 
Sbjct: 69  LLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQES 128

Query: 66  YLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASK----KKDEPSLYTSWTLS 121
           Y+RS+ Y  + L E KID  D    ++A    + ++  N  K     K++ S      LS
Sbjct: 129 YIRSTDYYHN-LAE-KIDPKD---DVIAQQRLVNSIISNDIKIQDLSKEKNSTSNDIVLS 183

Query: 122 FTAPTSEEAQTVLSGYIDY 140
           FTAP   EAQ +L GYI Y
Sbjct: 184 FTAPLPTEAQDLLEGYIRY 202


>UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae
           RepID=Q7N0P7_PHOLL
          Length = 367

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 7/141 (4%)

Query: 6   ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65
           ++PQKW+S+A +  P+  + Q L+   TKL VL+L   +  +  +N F+  F S  L EE
Sbjct: 60  LMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSRVLREE 119

Query: 66  YLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDN--ASKKKDEPSLYTSWTLSFT 123
           YL ++ Y  + + E+       H  +V      K V+DN  +S K ++        L+F+
Sbjct: 120 YLVNTEYFKNLVAESGD-----HSPLVKRKLIEKIVNDNISSSSKAEKDDENGETKLTFS 174

Query: 124 APTSEEAQTVLSGYIDYISTL 144
           A T+E+A  +L+GYIDY+S++
Sbjct: 175 AGTAEDAYNLLNGYIDYVSSV 195


>UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella
           RepID=C5BCN1_EDWI9
          Length = 357

 Score = 61.6 bits (148), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           +  +LPQKWTS A + P +  +   +     +L +LD+ +          F++ ++S  +
Sbjct: 45  VKTLLPQKWTSYAELIPAQARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQIV 104

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
             EY+  + Y    L  A  D L   R + +L++K   + ++   +  E   YT + L  
Sbjct: 105 RREYIAQTDY-YKTLAAALSDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRLGV 163

Query: 123 TAPTSEEAQTVLSGYIDYIST 143
           +A +S+EA  +L GYID+++ 
Sbjct: 164 SARSSQEAHALLQGYIDFVAA 184


>UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4SZ47_YERIN
          Length = 372

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++ F LPQKWTS++V+  P   +   L+    +L+V  +D  ID       +++   S 
Sbjct: 55  LIVGFFLPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L + +L+ + Y+   +K+   DE      +  +S      + NA+ K         + L
Sbjct: 115 ILRDAFLQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYI 141
            F+A T + A+ +L GY++Y+
Sbjct: 175 KFSAQTPDSAKDLLQGYMNYV 195


>UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila
           RepID=Q8KNM2_AERHY
          Length = 362

 Score = 40.0 bits (92), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 11/142 (7%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKKFQS 59
           + + PQ W S + + PP   + + LE    +L    +   I    ++   +  F+  F S
Sbjct: 58  ALLAPQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFNS 117

Query: 60  VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            +   ++L    Y+    + A I +    RA++      K V+  ++   D PS   + T
Sbjct: 118 FNNKRQFLIEKGYLDMDAEAAGITDDKGKRALL-----RKMVNGISAVALDAPS--DNIT 170

Query: 120 LSFTAPTSEEAQTVLSGYIDYI 141
           LSF A T+ EAQ  L  YI +I
Sbjct: 171 LSFGAATATEAQQRLEQYIAFI 192


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P26266 Ferric enterobactin transport protein fepE n=158...   177   9e-44
UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers...   164   5e-40
UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10...   164   9e-40
UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini...   162   3e-39
UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T...   157   6e-38
UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T...   153   2e-36
UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter...   149   3e-35
UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide...   148   4e-35
UniRef50_C4K3Z7 Regulator of length of O-antigen component of li...   147   1e-34
UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr...   141   5e-33
UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep...   139   3e-32
UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En...   127   7e-29

Sequences not found previously or not previously below threshold:

UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom...    66   4e-10
UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi...    63   2e-09
UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei...    62   5e-09
UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=...    62   7e-09
UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T...    60   1e-08
UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba...    59   4e-08
UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C...    57   2e-07
UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T...    55   8e-07
UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=...    54   1e-06
UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete...    54   1e-06
UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1...    53   4e-06
UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T...    52   8e-06
UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ...    47   2e-04
UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannhei...    47   2e-04
UniRef50_A5KZS4 Regulator of length of O-antigen component of li...    44   0.001
UniRef50_A1SRR6 Chain length determinant protein-like protein n=...    44   0.002
UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1...    43   0.003
UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T...    42   0.006
UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0...    41   0.012
UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn...    40   0.033
UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re...    39   0.060
UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinob...    39   0.065

>UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular
           organisms RepID=FEPE_ECOLI
          Length = 377

 Score =  177 bits (449), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV
Sbjct: 55  LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL
Sbjct: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           SFTAPTSEEAQTVLSGYIDYISTL
Sbjct: 175 SFTAPTSEEAQTVLSGYIDYISTL 198


>UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia
           RepID=A4TP85_YERPP
          Length = 383

 Score =  164 bits (416), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 77/144 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS A++  P   Q Q L++  T L VLD+ + +      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K    D LD    I  +  +  +  +    K +  + Y  + L
Sbjct: 118 DLREQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           S++A T  +A+ +L G I+Y++T+
Sbjct: 178 SYSASTPTDARDLLQGSINYVNTI 201


>UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia
           RepID=C4UHK4_YERRU
          Length = 384

 Score =  164 bits (414), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 77/143 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS +++ P    Q Q L+K    L VLD+++ I      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K++  D ++    I  +        +    K    + Y  + L
Sbjct: 118 DLREQYLINTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           S++A T+ +A+ +L GYI+++++
Sbjct: 178 SYSASTAVDARDLLQGYINFVNS 200


>UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4SZ47_YERIN
          Length = 372

 Score =  162 bits (411), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 69/141 (48%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++ F LPQKWTS++V+  P   +   L+    +L+V  +D  ID       +++   S 
Sbjct: 55  LIVGFFLPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L + +L+ + Y+   +K+   DE      +  +S      + NA+ K         + L
Sbjct: 115 ILRDAFLQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYI 141
            F+A T + A+ +L GY++Y+
Sbjct: 175 KFSAQTPDSAKDLLQGYMNYV 195


>UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter
           RepID=C9XZM2_CROTZ
          Length = 377

 Score =  157 bits (398), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/142 (46%), Positives = 97/142 (68%), Gaps = 1/142 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L ++F+LPQKWTS AVV+ PE  Q  EL++    L+VLD+D  ID     N+F+KKF S 
Sbjct: 55  LALAFLLPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           +L E++LR+SP+V  Q+KEA+ D   L RA+  +++++K +  N + K    S Y+SWTL
Sbjct: 115 ALQEKFLRTSPWVQAQVKEAQSDTESLERAVTLVAQRIK-MTSNDNPKAPTASPYSSWTL 173

Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142
           SFTAP +++AQ VL  YI+Y +
Sbjct: 174 SFTAPKAQDAQRVLKEYINYAA 195


>UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella
           RepID=C5BCN1_EDWI9
          Length = 357

 Score =  153 bits (386), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             +  +LPQKWTS A + P +  +   +     +L +LD+ +          F++ ++S 
Sbjct: 43  FAVKTLLPQKWTSYAELIPAQARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQ 102

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            +  EY+  + Y    L  A  D L   R + +L++K   + ++   +  E   YT + L
Sbjct: 103 IVRREYIAQTDYYK-TLAAALSDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRL 161

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
             +A +S+EA  +L GYID+++ 
Sbjct: 162 GVSARSSQEAHALLQGYIDFVAA 184


>UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae
           RepID=B4F1Q0_PROMH
          Length = 372

 Score =  149 bits (376), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 2/142 (1%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           ++  LPQKWTS A +T P   + ++L  +   L ++D+D  ++ +  +  FI  + S  L
Sbjct: 59  VASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSRVL 118

Query: 63  LEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
            EEYL ++ Y  + L +      LD  + I  +  K   +  + SK  DE        LS
Sbjct: 119 REEYLVNTDYYKNLLAKMDDPTPLDKRKLIETIVTKDINLKASDSKNSDE-EFSGEINLS 177

Query: 122 FTAPTSEEAQTVLSGYIDYIST 143
           FTAPTSEEA  +LSGYI +IST
Sbjct: 178 FTAPTSEEAYDLLSGYIRFIST 199


>UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q4F4_PROST
          Length = 372

 Score =  148 bits (374), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           + + F LPQKW+S AVV PP   + +++     +L VLD+ I +   + FN FI +++S 
Sbjct: 57  IFVVFQLPQKWSSTAVVIPPSSEEIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSK 116

Query: 61  SLLEEYLRSSPYVMDQ--LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
              E Y+RS+ Y         +   E +  R +  +      + D +   K++ S  +  
Sbjct: 117 VNQEAYVRSTNYFKKLSEQVNSTDKENEQQRLVNTIISNNIGLKDQS---KEKNSTSSDI 173

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            L+F APT  EAQ +LSGY+ Y +T
Sbjct: 174 ILTFVAPTPSEAQDLLSGYVRYTAT 198


>UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5
          Length = 308

 Score =  147 bits (371), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 4/143 (2%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
           LI + LP+KWTS A++T  +  Q Q  E    KL++ D+ +  D+    +LFI+ F S  
Sbjct: 62  LICYKLPEKWTSKAIITYIDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNV 121

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           L E+YL ++ Y    +K+   +       I+    K   ++ + S K+++   Y  +TLS
Sbjct: 122 LKEKYLVNTSYFQKLIKDHPENRNQFMLDII----KNIHIEYSKSNKENDFKGYVFYTLS 177

Query: 122 FTAPTSEEAQTVLSGYIDYISTL 144
           ++A T+++AQ +L+GYI+YIS +
Sbjct: 178 YSADTAKDAQNLLNGYINYISAI 200


>UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia
           RepID=D1P4F6_9ENTR
          Length = 375

 Score =  141 bits (356), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           +   LPQKWTS A++  P   + +E+ +   +L  LD +I +     +N FI +++S   
Sbjct: 59  VVKTLPQKWTSEAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVN 118

Query: 63  LEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            E+Y+RS+ Y    L +   K D  +  R +  +      +  NA +K  + S      L
Sbjct: 119 QEDYVRSTEYYQSLLAKLGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDDS---DIIL 175

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           SFTAPT+ EAQ +L+GYI Y ++
Sbjct: 176 SFTAPTAIEAQDLLNGYIRYTAS 198


>UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia
           rettgeri DSM 1131 RepID=UPI000197BC0B
          Length = 379

 Score =  139 bits (349), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 5/140 (3%)

Query: 6   ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65
           +LPQKW+S A+V PP   + +E+     +L VLD+ I +     FN F+ +++S    E 
Sbjct: 69  LLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQES 128

Query: 66  YLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 123
           Y+RS+ Y  +  +  + K D +   R + ++      + D +   K++ S      LSFT
Sbjct: 129 YIRSTDYYHNLAEKIDPKDDVIAQQRLVNSIISNDIKIQDLS---KEKNSTSNDIVLSFT 185

Query: 124 APTSEEAQTVLSGYIDYIST 143
           AP   EAQ +L GYI Y ++
Sbjct: 186 APLPTEAQDLLEGYIRYSAS 205


>UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae
           RepID=Q7N0P7_PHOLL
          Length = 367

 Score =  127 bits (320), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 81/146 (55%), Gaps = 7/146 (4%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
            + + ++PQKW+S+A +  P+  + Q L+   TKL VL+L   +  +  +N F+  F S 
Sbjct: 55  FVAASLMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDN--ASKKKDEPSLYTSW 118
            L EEYL ++ Y  + + E+       H  +V      K V+DN  +S K ++       
Sbjct: 115 VLREEYLVNTEYFKNLVAESGD-----HSPLVKRKLIEKIVNDNISSSSKAEKDDENGET 169

Query: 119 TLSFTAPTSEEAQTVLSGYIDYISTL 144
            L+F+A T+E+A  +L+GYIDY+S++
Sbjct: 170 KLTFSAGTAEDAYNLLNGYIDYVSSV 195


>UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila
           RepID=Q8KNM2_AERHY
          Length = 362

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKKFQS 59
           + + PQ W S + + PP   + + LE    +L    +   I    ++   +  F+  F S
Sbjct: 58  ALLAPQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFNS 117

Query: 60  VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            +   ++L    Y+    + A I +    RA++       +     +   +        T
Sbjct: 118 FNNKRQFLIEKGYLDMDAEAAGITDDKGKRALLRKMVNGISAVALDAPSDN-------IT 170

Query: 120 LSFTAPTSEEAQTVLSGYIDYI 141
           LSF A T+ EAQ  L  YI +I
Sbjct: 171 LSFGAATATEAQQRLEQYIAFI 192


>UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia
           RepID=A1JMR4_YERE8
          Length = 363

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 23/140 (16%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           + F  P++WTS A+V+     + Q LE   + L VL++D+ I   +    F K + S  +
Sbjct: 58  VVFFSPKEWTSYAIVSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKDM 117

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
           L +Y+                  +   A      K K ++ ++  K +       + L++
Sbjct: 118 LSKYM----------------SKEKVNANNFAGLKGKNINSDSDVKGN-------YILTY 154

Query: 123 TAPTSEEAQTVLSGYIDYIS 142
           ++      + V +GY++YI+
Sbjct: 155 SSNLEYGLKDVFTGYVNYIN 174


>UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65UU8_MANSM
          Length = 396

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQ----WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A    P+            +    L + +   K      FN F    
Sbjct: 67  IYAFTAKEQWTSKATTIAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVAL 126

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S ++  E+   S +  +   E   DE    + +  + +K   V     KK         
Sbjct: 127 FSNNMKREFFAQSKWFQNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALG--- 183

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
             +SF A T +EAQ VL+ YI++I+ 
Sbjct: 184 INISFAAETPKEAQEVLTEYINFINA 209


>UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus
           succinogenes 130Z RepID=A6VMI6_ACTSZ
          Length = 346

 Score = 61.6 bits (148), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL----RVLDLDIKIDRTEAFNLFIKKF 57
           + +F   +KWTS A V  P  V       +  +     ++ D+ +       +  F +  
Sbjct: 45  IYAFTATEKWTSTAEVIAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLA 104

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S +    +   S      +++   DE    + + AL+ +  AV     KK  +      
Sbjct: 105 FSQNERRNFFSQSDEYKGLIQD--QDEKAQRKILSALTTEYTAVVRPDPKKNADMFGN-- 160

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142
             +SF+A T E AQ  L+ ++D+I+
Sbjct: 161 -KISFSAQTPENAQKTLAQFVDFIN 184


>UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae
           RepID=A7JUL8_PASHA
          Length = 375

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A V  P+  +  E      +    LRV  +D        FN F +  
Sbjct: 44  IYAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLA 103

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
           QS     E+  +S            DE      +  LS +  +     +KK         
Sbjct: 104 QSQDTKNEFFITSNVYKTL--AEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGR-- 159

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
            TLSF+A T  EAQ  L   + +I++
Sbjct: 160 -TLSFSAETPMEAQDTLGKLVQFINS 184


>UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2C7A7_9GAMM
          Length = 351

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 10/138 (7%)

Query: 9   QKWTSAAVVTPPEPVQWQELEKSFTKL-RVLDL---DIKIDRTEAFNLFIKKFQSVSLLE 64
           Q WTS A VT  +      +    T L  V+D+   +   +     N FI +F +    +
Sbjct: 51  QWWTSDATVTRGQYKDTANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITEFNAFDNKK 110

Query: 65  EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 124
            +L  +  +    K+  +++ D  + I   ++K+       +   DE      + LSF A
Sbjct: 111 AFLEQNSIIEQYAKDDGVNKEDKGKFIAFWAKKI------DASLNDEKKRPNVYKLSFEA 164

Query: 125 PTSEEAQTVLSGYIDYIS 142
            +SE A  +L  Y  +I+
Sbjct: 165 RSSEAAHDLLKAYSSFIT 182


>UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST
          Length = 378

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQE---LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   ++WTS A V  P+         + K + ++   + D        F  F    +
Sbjct: 43  IYAFTAKEQWTSKAEVIAPKVTDLGSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSE 102

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+    E+   S      ++    DE      +  L+ +  A+     KK+ +       
Sbjct: 103 SLDERNEFFVQSDVYKKLIE--GKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGR--- 157

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF A T E+AQ  L  +I + S
Sbjct: 158 RISFLAETPEDAQLTLEKFIAFTS 181


>UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           angustum S14 RepID=Q1ZRK1_PHOAS
          Length = 347

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 11  WTSAAVVTPPEPVQWQELEKSFTKLRVLD-----LDIKIDRTEAFNLFIKKFQSVSLLEE 65
           WTS AV+T  +    +   ++   L V       +   +D       F+  F + +   E
Sbjct: 56  WTSTAVITTNKARDIRIFSENIDNLYVNSGVGGLVSQALDEKRLLRTFVNYFNAYNNKLE 115

Query: 66  YLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAP 125
           +L  +  +       K     L R I  +           + +K        ++LS+TA 
Sbjct: 116 FLEGNKSIKSDFINEKEKHDFLQRFIKRI-----------NSEKVGNDSQVLYSLSYTAT 164

Query: 126 TSEEAQTVLSGYIDYIS 142
           +S ++  +LS YI++I+
Sbjct: 165 SSIKSHDLLSEYINFIN 181


>UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis
           DSM 9187 RepID=C4L7N8_TOLAT
          Length = 372

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR---------TEAFNL 52
           + +F   + WTS AV   P+  +     +   +LR       I            E F  
Sbjct: 55  IYAFTAEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTE 114

Query: 53  FIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           F K+  S+ L  E+   S Y  + +   K  E D  + +  L EK   V     +K   P
Sbjct: 115 FQKQTNSIDLRREFWSQSDYYHNLVINIKS-EKDKEKKLDDLIEKNITVVPIDEQKVKFP 173

Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
           S      +S +   +  A+ +L  Y+D ++ 
Sbjct: 174 S------VSLSVNDATTAKELLIQYVDKLNA 198


>UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans
           RepID=Q9JRS3_AGGAC
          Length = 369

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQE---LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           +  F   ++WTS A +  P   +  +   ++K + ++   + D  +     F  F    +
Sbjct: 40  IYVFTAKEQWTSKAEIIAPRITELGDYFLVKKEYARILGSEFDASMTANNLFGQFNLLSE 99

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+   +++   S +   +       E +  + +  L  K  A+    +KK  +       
Sbjct: 100 SLDERKKFFEKSDFYKKE--SEGKSEREKLQILFDLMTKNIAIKKPDTKKYPDLIGN--- 154

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF A T  EAQ VLS +I  ++
Sbjct: 155 QISFYAETPIEAQNVLSKFISTVN 178


>UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174
           Tax=Enterobacteriaceae RepID=WZZE_ECO57
          Length = 348

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 19/150 (12%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRT-------EAFNLF 53
           L  +F   Q+W+S A+   P              LR LD+   +          EA+  F
Sbjct: 45  LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEF 104

Query: 54  IKKFQSVSLLEEYLRSSPYVMDQLK-EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           + +  S     E+   + Y   ++   +K D      A++               +    
Sbjct: 105 VMQLASWDTRREFWLQTDYYKQRMVGNSKADA-----ALLDEMINNIQFIPGDFTRAVND 159

Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
           S      +   A T+ +A  +L  Y+ + S
Sbjct: 160 S------VKLIAETAPDANNLLRQYVAFAS 183


>UniRef50_Q3YTC2 O antigen chain length determinant protein n=5
           Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS
          Length = 346

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQW-------QELEKSFTKLRVLDLDIKIDRTEAFNLFI 54
           + +F   ++WT+   +  P   +        Q   +   +     LD        F+  I
Sbjct: 37  VYAFTAKEQWTAKTYIQAPRIAELGSYLKFHQAYARILNQ----PLDTNALANGLFSDLI 92

Query: 55  KKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114
              +S     ++L S+ Y   +       E D    +   + K   +     K       
Sbjct: 93  LIAESPDTKVKFLESTEYYKKE-TNNLSTEQDKKIWLAEQANKGLVITPPKEKGNT---- 147

Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
            + + +  +A +++EA  +L GY+  ++
Sbjct: 148 -SYYIIQASADSAQEAYKLLQGYLKNVN 174


>UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32
           RepID=B7VHQ6_VIBSL
          Length = 374

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 21/148 (14%)

Query: 11  WTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTEAFNLFIKK 56
           W+S A +T  E       E+   K + +              +LD  +D    F  F+  
Sbjct: 62  WSSEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQIIFQRFVDL 121

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVD---DNASKKKDEPS 113
           F S +  + +L  S        E K D       +   + +    +     ++  +D+  
Sbjct: 122 FNSSNNKKAFLDESSEFQ----EIKDDSFSSASEVTEDTTRKLYTEWFERISASLRDKKD 177

Query: 114 LYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
             + + L+F A T E +  +LS YI + 
Sbjct: 178 TSSPYILTFQATTKESSFDLLSSYISFT 205


>UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65U41_MANSM
          Length = 260

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-LDIKIDR-TEAFNLFIKKFQSVS 61
           S++    WT  + +  P   +       ++  ++L+      D   + FN F +   S  
Sbjct: 34  SYLAKNLWTVQSSLEKPALTELGNYYSLYSTYQLLNNEKANQDPTGDIFNRFKQLAGSYE 93

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
             + +  ++ Y   +L     D     + +  LS ++K +D NA+  +          LS
Sbjct: 94  HAKVFWENTDYYKQKL---TDDSQHDSQLLDQLSREIKLLDTNAATTQ----------LS 140

Query: 122 FTAPTSEEAQTVLSGYIDYI 141
                 + A+ +L+ YIDY 
Sbjct: 141 LELDNPKRARELLTEYIDYT 160


>UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Vibrionales bacterium SWAT-3
           RepID=A5KZS4_9GAMM
          Length = 358

 Score = 44.3 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 15/142 (10%)

Query: 11  WTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTEAFNLFIKK 56
           W+S+A +T  +P      ++   + + +              +LD  +D    F  FI  
Sbjct: 46  WSSSAKITKAQPQNLAAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDSKVLFQRFINA 105

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116
           F S +    +L +S     + K +            A + + +  +  ++   D     +
Sbjct: 106 FNSTNNKRSFLDNSAEFQ-EFKSSMAVGSSDMSVDEARAFRAEWFNRISAFTADNKGPNS 164

Query: 117 SWTLSFTAPTSEEAQTVLSGYI 138
            +T++F   T E +  +L+ YI
Sbjct: 165 PYTINFQTMTKESSFELLAAYI 186


>UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas
           RepID=A1SRR6_PSYIN
          Length = 347

 Score = 43.5 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 44  IDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDD 103
            + +  F  FI  F S    + +L ++P  +  L+  +I       A  +  + +  +++
Sbjct: 77  FEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKGSAQESRQQYLIVLNN 136

Query: 104 NASK-KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
             +K      S  +   LSF + T E +  +L+ YI +I
Sbjct: 137 WMNKINASLNSQTSELALSFRSATKESSAELLNEYILFI 175


>UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella
           dagmatis ATCC 43325 RepID=C9PPK9_9PAST
          Length = 282

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 10/142 (7%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR-VLDLDIKIDR-TEAFNLFIKKFQSVS 61
           SF++ ++W + A V  P            +  + V             +  F K+  S  
Sbjct: 37  SFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVSGKPTDTTPMDFVYREFKKQAGSYD 96

Query: 62  LLEEYLRSSPYVM-DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           ++ ++ R++ +    Q  E   D+ +L R   +L    +   +  S+K  +        +
Sbjct: 97  IVVDFWRNTDFYKQKQTGENVFDQQELERLANSLGFTPQQAINGLSEKIGD-------RI 149

Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142
           S T  + ++A  +LS ++DY++
Sbjct: 150 SLTLGSPKQATELLSDFVDYVN 171


>UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA
          Length = 352

 Score = 42.0 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRV-----LDLDIKIDRTEAFNLFIK 55
           L++S    Q W S+A +T P+   +     S  +L         L   I+  + +N FI 
Sbjct: 42  LIVSIYSAQWWESSAEITKPQYSDYAVFISSADQLTTGSNPSESLKSIINIEKNYNSFIN 101

Query: 56  KFQSVSLLEEYLRSSPYVMD-QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114
              S +   ++L+ S  +    +++    ++   +A+   +EK+    ++    K     
Sbjct: 102 ILTSKTNKIDFLQQSNIIKSYFIRDGVKTDIQKDKALDLWAEKIIVKKESLILNK----- 156

Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYI 141
            +S+ +   A T +++  +L+ YI + 
Sbjct: 157 -SSYIVIAQANTLDDSFKLLNNYIKFT 182


>UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI
          Length = 379

 Score = 40.8 bits (94), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 23/148 (15%)

Query: 11  WTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTEAFNLFIKK 56
           W+S A VT P        +K   + + L               LD  ID    F  F+++
Sbjct: 63  WSSKATVTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDPEVIFKRFLQE 122

Query: 57  FQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114
           F +      +++++   +   KE   + +   L        E++K V             
Sbjct: 123 FNANGTKRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGVPVGK-------KE 175

Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
              +TLSF +   + + T+LS Y+ +++
Sbjct: 176 ENIFTLSFQSVDKDSSLTLLSQYVQFVN 203


>UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae
           RepID=B0BR52_ACTPJ
          Length = 370

 Score = 39.7 bits (91), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL---DLDIKIDRTEAFNLFIKKFQ 58
           + +F   +KWTS   V  P      E      +  ++   +      R E   LF +   
Sbjct: 44  VYAFTAKEKWTSQTEVIAPRVTDISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVL 103

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S      + +++            +E+ L RA+   + +   V    +KK          
Sbjct: 104 SYDEAIAFFKTTDTYKKL--AETENEVGLQRAVAEFTTESLKVIKPDAKKDPNALGS--- 158

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            ++ +  T+  AQT L+ +I +IS
Sbjct: 159 KIAISFDTALSAQTTLNDFICHIS 182


>UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH
          Length = 377

 Score = 38.5 bits (88), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 58/150 (38%), Gaps = 23/150 (15%)

Query: 11  WTSAAVVTPPEPVQWQELEKSFTKLR-VLDL-------------DIKIDRTEAFNLFIKK 56
           W++ A V+ P+       +++  + + + D+             D  ID    F  F+++
Sbjct: 64  WSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDAEVIFKRFLQE 123

Query: 57  FQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114
           F +      ++ ++   ++  K+   K D   L        E++K V             
Sbjct: 124 FNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGVSIGE-------KE 176

Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYISTL 144
             ++TLSF +     +  +L  Y+ +++ +
Sbjct: 177 DGAFTLSFQSVDKISSLALLREYVQFVNQI 206


>UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinobacillus minor
           RepID=C5S436_9PAST
          Length = 256

 Score = 38.5 bits (88), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 22/147 (14%)

Query: 6   ILPQKWTSAAVVTPPEPVQW-------QELEKSFTKLRVLDLDI--KIDRTEAFNLFIKK 56
             P +W ++A    P+  +                     D+          ++  F K 
Sbjct: 25  FQPTQWQASAQFEHPQTAELGNYLTLFSTYHLISGDTAAADISKMEAKAAEASYTEFKKN 84

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116
            QS   L ++L +S  V  Q K   I E  +      + +  K     +   + +     
Sbjct: 85  IQSQEKLAQFLTNSALVKAQAKIEGISEQAM------VQQLSKHFQFTSGNNQPD----- 133

Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIST 143
             TLS T+ +++EA  +   Y+ Y++T
Sbjct: 134 --TLSLTSFSTQEADNLFGEYLRYVNT 158


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10...   151   8e-36
UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers...   150   1e-35
UniRef50_P26266 Ferric enterobactin transport protein fepE n=158...   149   3e-35
UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini...   141   7e-33
UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T...   137   1e-31
UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter...   137   1e-31
UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T...   136   2e-31
UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr...   126   2e-28
UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide...   126   2e-28
UniRef50_C4K3Z7 Regulator of length of O-antigen component of li...   122   2e-27
UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep...   122   3e-27
UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei...   119   2e-26
UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T...   117   1e-25
UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C...   116   2e-25
UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=...   114   9e-25
UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En...   114   1e-24
UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1...   110   1e-23
UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete...   110   1e-23
UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=...   105   4e-22
UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom...   105   4e-22
UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba...   104   1e-21
UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T...   102   3e-21
UniRef50_A5KZS4 Regulator of length of O-antigen component of li...    98   9e-20
UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T...    94   1e-18
UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ...    91   1e-17
UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannhei...    90   2e-17
UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi...    88   7e-17
UniRef50_A1SRR6 Chain length determinant protein-like protein n=...    83   2e-15

Sequences not found previously or not previously below threshold:

UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn...    77   2e-13
UniRef50_C9P0E2 Regulator of length of O-antigen component of li...    72   4e-12
UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0...    71   1e-11
UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re...    70   3e-11
UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1...    65   6e-10
UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph...    64   1e-09
UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T...    57   1e-07
UniRef50_A7JRK0 Lipopolysaccharide chain length determinant prot...    57   2e-07
UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteur...    51   2e-05
UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinob...    50   2e-05
UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon...    46   4e-04
UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinob...    44   0.001
UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni...    44   0.001
UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter...    42   0.008
UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n...    40   0.020
UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influe...    38   0.093

>UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia
           RepID=C4UHK4_YERRU
          Length = 384

 Score =  151 bits (380), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 77/143 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS +++ P    Q Q L+K    L VLD+++ I      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K++  D ++    I  +        +    K    + Y  + L
Sbjct: 118 DLREQYLINTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           S++A T+ +A+ +L GYI+++++
Sbjct: 178 SYSASTAVDARDLLQGYINFVNS 200


>UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia
           RepID=A4TP85_YERPP
          Length = 383

 Score =  150 bits (379), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 77/144 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS A++  P   Q Q L++  T L VLD+ + +      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K    D LD    I  +  +  +  +    K +  + Y  + L
Sbjct: 118 DLREQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           S++A T  +A+ +L G I+Y++T+
Sbjct: 178 SYSASTPTDARDLLQGSINYVNTI 201


>UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular
           organisms RepID=FEPE_ECOLI
          Length = 377

 Score =  149 bits (375), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV
Sbjct: 55  LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL
Sbjct: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           SFTAPTSEEAQTVLSGYIDYISTL
Sbjct: 175 SFTAPTSEEAQTVLSGYIDYISTL 198


>UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4SZ47_YERIN
          Length = 372

 Score =  141 bits (355), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 69/141 (48%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++ F LPQKWTS++V+  P   +   L+    +L+V  +D  ID       +++   S 
Sbjct: 55  LIVGFFLPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L + +L+ + Y+   +K+   DE      +  +S      + NA+ K         + L
Sbjct: 115 ILRDAFLQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYI 141
            F+A T + A+ +L GY++Y+
Sbjct: 175 KFSAQTPDSAKDLLQGYMNYV 195


>UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter
           RepID=C9XZM2_CROTZ
          Length = 377

 Score =  137 bits (345), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/142 (45%), Positives = 95/142 (66%), Gaps = 1/142 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L ++F+LPQKWTS AVV+ PE  Q  EL++    L+VLD+D  ID     N+F+KKF S 
Sbjct: 55  LALAFLLPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           +L E++LR+SP+V  Q+KEA+ D   L RA+  ++++   +  N + K    S Y+SWTL
Sbjct: 115 ALQEKFLRTSPWVQAQVKEAQSDTESLERAVTLVAQR-IKMTSNDNPKAPTASPYSSWTL 173

Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142
           SFTAP +++AQ VL  YI+Y +
Sbjct: 174 SFTAPKAQDAQRVLKEYINYAA 195


>UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae
           RepID=B4F1Q0_PROMH
          Length = 372

 Score =  137 bits (344), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             ++  LPQKWTS A +T P   + ++L  +   L ++D+D  ++ +  +  FI  + S 
Sbjct: 57  FTVASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSR 116

Query: 61  SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            L EEYL ++ Y  + L +      LD  + I  +  K   +  +   K  +        
Sbjct: 117 VLREEYLVNTDYYKNLLAKMDDPTPLDKRKLIETIVTKDINLKASD-SKNSDEEFSGEIN 175

Query: 120 LSFTAPTSEEAQTVLSGYIDYIST 143
           LSFTAPTSEEA  +LSGYI +IST
Sbjct: 176 LSFTAPTSEEAYDLLSGYIRFIST 199


>UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella
           RepID=C5BCN1_EDWI9
          Length = 357

 Score =  136 bits (342), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             +  +LPQKWTS A + P +  +   +     +L +LD+ +          F++ ++S 
Sbjct: 43  FAVKTLLPQKWTSYAELIPAQARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQ 102

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            +  EY+  + Y       A  D L   R + +L++K   + ++   +  E   YT + L
Sbjct: 103 IVRREYIAQTDYYKTLAA-ALSDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRL 161

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
             +A +S+EA  +L GYID+++ 
Sbjct: 162 GVSARSSQEAHALLQGYIDFVAA 184


>UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia
           RepID=D1P4F6_9ENTR
          Length = 375

 Score =  126 bits (317), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           +   LPQKWTS A++  P   + +E+ +   +L  LD +I +     +N FI +++S   
Sbjct: 59  VVKTLPQKWTSEAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVN 118

Query: 63  LEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            E+Y+RS+ Y    L +   K D  +  R +  +      +  NA +K  + S      L
Sbjct: 119 QEDYVRSTEYYQSLLAKLGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDDS---DIIL 175

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           SFTAPT+ EAQ +L+GYI Y ++
Sbjct: 176 SFTAPTAIEAQDLLNGYIRYTAS 198


>UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q4F4_PROST
          Length = 372

 Score =  126 bits (316), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           + + F LPQKW+S AVV PP   + +++     +L VLD+ I +   + FN FI +++S 
Sbjct: 57  IFVVFQLPQKWSSTAVVIPPSSEEIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSK 116

Query: 61  SLLEEYLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
              E Y+RS+ Y     +   +   E +  R +  +      + D + +K    S  +  
Sbjct: 117 VNQEAYVRSTNYFKKLSEQVNSTDKENEQQRLVNTIISNNIGLKDQSKEKN---STSSDI 173

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            L+F APT  EAQ +LSGY+ Y +T
Sbjct: 174 ILTFVAPTPSEAQDLLSGYVRYTAT 198


>UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5
          Length = 308

 Score =  122 bits (307), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 4/143 (2%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
           LI + LP+KWTS A++T  +  Q Q  E    KL++ D+ +  D+    +LFI+ F S  
Sbjct: 62  LICYKLPEKWTSKAIITYIDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNV 121

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           L E+YL ++ Y    +K+   +       I     K   ++ + S K+++   Y  +TLS
Sbjct: 122 LKEKYLVNTSYFQKLIKDHPENRNQFMLDI----IKNIHIEYSKSNKENDFKGYVFYTLS 177

Query: 122 FTAPTSEEAQTVLSGYIDYISTL 144
           ++A T+++AQ +L+GYI+YIS +
Sbjct: 178 YSADTAKDAQNLLNGYINYISAI 200


>UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia
           rettgeri DSM 1131 RepID=UPI000197BC0B
          Length = 379

 Score =  122 bits (306), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 6   ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65
           +LPQKW+S A+V PP   + +E+     +L VLD+ I +     FN F+ +++S    E 
Sbjct: 69  LLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQES 128

Query: 66  YLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 123
           Y+RS+ Y  +  +  + K D +   R + ++      + D + +K    S      LSFT
Sbjct: 129 YIRSTDYYHNLAEKIDPKDDVIAQQRLVNSIISNDIKIQDLSKEKN---STSNDIVLSFT 185

Query: 124 APTSEEAQTVLSGYIDYIST 143
           AP   EAQ +L GYI Y ++
Sbjct: 186 APLPTEAQDLLEGYIRYSAS 205


>UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65UU8_MANSM
          Length = 396

 Score =  119 bits (299), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A    P+            +    L + +   K      FN F    
Sbjct: 67  IYAFTAKEQWTSKATTIAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVAL 126

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S ++  E+   S +  +   E   DE    + +  + +K   V     KK         
Sbjct: 127 FSNNMKREFFAQSKWFQNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALG--- 183

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
             +SF A T +EAQ VL+ YI++I+ 
Sbjct: 184 INISFAAETPKEAQEVLTEYINFINA 209


>UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae
           RepID=A7JUL8_PASHA
          Length = 375

 Score =  117 bits (292), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A V  P+  +  E      +    LRV  +D        FN F +  
Sbjct: 44  IYAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLA 103

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
           QS     E+  +S            DE      +  LS +  +     +KK         
Sbjct: 104 QSQDTKNEFFITSNVYKTLA--EGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGR-- 159

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
            TLSF+A T  EAQ  L   + +I++
Sbjct: 160 -TLSFSAETPMEAQDTLGKLVQFINS 184


>UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST
          Length = 378

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   ++WTS A V  P+           K + ++   + D        F  F    +
Sbjct: 43  IYAFTAKEQWTSKAEVIAPKVTDLGSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSE 102

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+    E+   S      ++    DE      +  L+ +  A+     KK+ +       
Sbjct: 103 SLDERNEFFVQSDVYKKLIE--GKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGR--- 157

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF A T E+AQ  L  +I + S
Sbjct: 158 RISFLAETPEDAQLTLEKFIAFTS 181


>UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus
           succinogenes 130Z RepID=A6VMI6_ACTSZ
          Length = 346

 Score =  114 bits (285), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL----RVLDLDIKIDRTEAFNLFIKKF 57
           + +F   +KWTS A V  P  V       +  +     ++ D+ +       +  F +  
Sbjct: 45  IYAFTATEKWTSTAEVIAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLA 104

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S +    +   S      +++   DE    + + AL+ +  AV     KK  +      
Sbjct: 105 FSQNERRNFFSQSDEYKGLIQD--QDEKAQRKILSALTTEYTAVVRPDPKKNADMFGN-- 160

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142
             +SF+A T E AQ  L+ ++D+I+
Sbjct: 161 -KISFSAQTPENAQKTLAQFVDFIN 184


>UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae
           RepID=Q7N0P7_PHOLL
          Length = 367

 Score =  114 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
            + + ++PQKW+S+A +  P+  + Q L+   TKL VL+L   +  +  +N F+  F S 
Sbjct: 55  FVAASLMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            L EEYL ++ Y  + + E+     L   + I  +     +    +S K ++        
Sbjct: 115 VLREEYLVNTEYFKNLVAESGDHSPLVKRKLIEKIVNDNIS----SSSKAEKDDENGETK 170

Query: 120 LSFTAPTSEEAQTVLSGYIDYISTL 144
           L+F+A T+E+A  +L+GYIDY+S++
Sbjct: 171 LTFSAGTAEDAYNLLNGYIDYVSSV 195


>UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174
           Tax=Enterobacteriaceae RepID=WZZE_ECO57
          Length = 348

 Score =  110 bits (276), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 19/150 (12%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTE-------AFNLF 53
           L  +F   Q+W+S A+   P              LR LD+   +   +       A+  F
Sbjct: 45  LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEF 104

Query: 54  IKKFQSVSLLEEYLRSSPYVMDQLK-EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           + +  S     E+   + Y   ++   +K D      A++               +    
Sbjct: 105 VMQLASWDTRREFWLQTDYYKQRMVGNSKADA-----ALLDEMINNIQFIPGDFTRAVND 159

Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
           S      +   A T+ +A  +L  Y+ + S
Sbjct: 160 S------VKLIAETAPDANNLLRQYVAFAS 183


>UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans
           RepID=Q9JRS3_AGGAC
          Length = 369

 Score =  110 bits (275), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           +  F   ++WTS A +  P   +  +    +K + ++   + D  +     F  F    +
Sbjct: 40  IYVFTAKEQWTSKAEIIAPRITELGDYFLVKKEYARILGSEFDASMTANNLFGQFNLLSE 99

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+   +++   S +     +     E +  + +  L  K  A+    +KK  +       
Sbjct: 100 SLDERKKFFEKSDFYKK--ESEGKSEREKLQILFDLMTKNIAIKKPDTKKYPDLIGN--- 154

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF A T  EAQ VLS +I  ++
Sbjct: 155 QISFYAETPIEAQNVLSKFISTVN 178


>UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis
           DSM 9187 RepID=C4L7N8_TOLAT
          Length = 372

 Score =  105 bits (262), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR---------TEAFNL 52
           + +F   + WTS AV   P+  +     +   +LR       I            E F  
Sbjct: 55  IYAFTAEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTE 114

Query: 53  FIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           F K+  S+ L  E+   S Y  + +   K  E D  + +  L EK   V     +K   P
Sbjct: 115 FQKQTNSIDLRREFWSQSDYYHNLVINIKS-EKDKEKKLDDLIEKNITVVPIDEQKVKFP 173

Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
           S      +S +   +  A+ +L  Y+D ++ 
Sbjct: 174 S------VSLSVNDATTAKELLIQYVDKLNA 198


>UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila
           RepID=Q8KNM2_AERHY
          Length = 362

 Score =  105 bits (262), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKKFQ 58
            + + PQ W S + + PP   + + LE    +L    +   I    ++   +  F+  F 
Sbjct: 57  YALLAPQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFN 116

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S +   ++L    Y+    + A I +    RA++       +     +   +        
Sbjct: 117 SFNNKRQFLIEKGYLDMDAEAAGITDDKGKRALLRKMVNGISAVALDAPSDN-------I 169

Query: 119 TLSFTAPTSEEAQTVLSGYIDYI 141
           TLSF A T+ EAQ  L  YI +I
Sbjct: 170 TLSFGAATATEAQQRLEQYIAFI 192


>UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2C7A7_9GAMM
          Length = 351

 Score =  104 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR----VLDLDIKIDRTEAFNLFIKK 56
           ++ +    Q WTS A VT  +      +    T L     V  ++   +     N FI +
Sbjct: 43  IVYALTAQQWWTSDATVTRGQYKDTANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITE 102

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116
           F +    + +L  +  +    K+  +++ D  + I   ++K        +   DE     
Sbjct: 103 FNAFDNKKAFLEQNSIIEQYAKDDGVNKEDKGKFIAFWAKK------IDASLNDEKKRPN 156

Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIS 142
            + LSF A +SE A  +L  Y  +I+
Sbjct: 157 VYKLSFEARSSEAAHDLLKAYSSFIT 182


>UniRef50_Q3YTC2 O antigen chain length determinant protein n=5
           Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS
          Length = 346

 Score =  102 bits (254), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 9/144 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   ++WT+   +  P   +        +++ ++    LD        F+  I   +
Sbjct: 37  VYAFTAKEQWTAKTYIQAPRIAELGSYLKFHQAYARILNQPLDTNALANGLFSDLILIAE 96

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S     ++L S+ Y   +       E D    +   + K   +     K        + +
Sbjct: 97  SPDTKVKFLESTEYYKKE-TNNLSTEQDKKIWLAEQANKGLVITPPKEKGNT-----SYY 150

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +  +A +++EA  +L GY+  ++
Sbjct: 151 IIQASADSAQEAYKLLQGYLKNVN 174


>UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Vibrionales bacterium SWAT-3
           RepID=A5KZS4_9GAMM
          Length = 358

 Score = 97.9 bits (242), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  + +  + W+S+A +T  +P      ++   + + +              +LD  +D 
Sbjct: 36  IAFALLAQEWWSSSAKITKAQPQNLAAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDS 95

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 106
              F  FI  F S +    +L +S     + K +            A + + +  +  ++
Sbjct: 96  KVLFQRFINAFNSTNNKRSFLDNSAEFQ-EFKSSMAVGSSDMSVDEARAFRAEWFNRISA 154

Query: 107 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 138
              D     + +T++F   T E +  +L+ YI
Sbjct: 155 FTADNKGPNSPYTINFQTMTKESSFELLAAYI 186


>UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           angustum S14 RepID=Q1ZRK1_PHOAS
          Length = 347

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-----LDIKIDRTEAFNLFIKKF 57
            ++     WTS AV+T  +    +   ++   L V       +   +D       F+  F
Sbjct: 48  YAYYAQSWWTSTAVITTNKARDIRIFSENIDNLYVNSGVGGLVSQALDEKRLLRTFVNYF 107

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            + +   E+L  +  +       K     L R I  +           + +K        
Sbjct: 108 NAYNNKLEFLEGNKSIKSDFINEKEKHDFLQRFIKRI-----------NSEKVGNDSQVL 156

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142
           ++LS+TA +S ++  +LS YI++I+
Sbjct: 157 YSLSYTATSSIKSHDLLSEYINFIN 181


>UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32
           RepID=B7VHQ6_VIBSL
          Length = 374

 Score = 91.0 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 15/153 (9%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTE 48
            + +  + W+S A +T  E       E+   K + +              +LD  +D   
Sbjct: 54  FALLAQEWWSSEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQI 113

Query: 49  AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKK 108
            F  F+  F S +  + +L  S     ++K+                   +  +  ++  
Sbjct: 114 IFQRFVDLFNSSNNKKAFLDESSEFQ-EIKDDSFSSASEVTEDTTRKLYTEWFERISASL 172

Query: 109 KDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
           +D+    + + L+F A T E +  +LS YI + 
Sbjct: 173 RDKKDTSSPYILTFQATTKESSFDLLSSYISFT 205


>UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65U41_MANSM
          Length = 260

 Score = 89.8 bits (221), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-LDIKIDR-TEAFNLFIKKFQSVS 61
           S++    WT  + +  P   +       ++  ++L+      D   + FN F +   S  
Sbjct: 34  SYLAKNLWTVQSSLEKPALTELGNYYSLYSTYQLLNNEKANQDPTGDIFNRFKQLAGSYE 93

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
             + +  ++ Y   +L     D     + +  LS ++K +D NA+  +          LS
Sbjct: 94  HAKVFWENTDYYKQKL---TDDSQHDSQLLDQLSREIKLLDTNAATTQ----------LS 140

Query: 122 FTAPTSEEAQTVLSGYIDYI 141
                 + A+ +L+ YIDY 
Sbjct: 141 LELDNPKRARELLTEYIDYT 160


>UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia
           RepID=A1JMR4_YERE8
          Length = 363

 Score = 88.3 bits (217), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 23/140 (16%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           + F  P++WTS A+V+     + Q LE   + L VL++D+ I   +    F K + S  +
Sbjct: 58  VVFFSPKEWTSYAIVSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKDM 117

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
           L +Y+                  +   A      K K ++ ++  K +       + L++
Sbjct: 118 LSKYM----------------SKEKVNANNFAGLKGKNINSDSDVKGN-------YILTY 154

Query: 123 TAPTSEEAQTVLSGYIDYIS 142
           ++      + V +GY++YI+
Sbjct: 155 SSNLEYGLKDVFTGYVNYIN 174


>UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas
           RepID=A1SRR6_PSYIN
          Length = 347

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 24/163 (14%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----------------------D 39
            +    + W +   V  P+      L     K+  +                       +
Sbjct: 13  YALNAQEWWVAKGKVIAPQVNDVAALYAQSNKVSAILNSNDLLNSNSNNNGQDTKQVSKE 72

Query: 40  LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMK 99
           L    + +  F  FI  F S    + +L ++P  +  L+  +I       A  +  + + 
Sbjct: 73  LVDLFEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKGSAQESRQQYLI 132

Query: 100 AVDDNASK-KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
            +++  +K      S  +   LSF + T E +  +L+ YI +I
Sbjct: 133 VLNNWMNKINASLNSQTSELALSFRSATKESSAELLNEYILFI 175


>UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae
           RepID=B0BR52_ACTPJ
          Length = 370

 Score = 76.7 bits (187), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   +KWTS   V  P      E     K +  +   +      R E   LF +   
Sbjct: 44  VYAFTAKEKWTSQTEVIAPRVTDISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVL 103

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S      + +++            +E+ L RA+   + +   V    +KK       +  
Sbjct: 104 SYDEAIAFFKTTDTYKKLA--ETENEVGLQRAVAEFTTESLKVIKPDAKKDPNALG-SKI 160

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF   T+  AQT L+ +I +IS
Sbjct: 161 AISF--DTALSAQTTLNDFICHIS 182


>UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450
           RepID=C9P0E2_9VIBR
          Length = 383

 Score = 72.5 bits (176), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           ++ +    + W+S A VT  +P      ++   + + +              +LD  +D 
Sbjct: 56  VVFALNSQEWWSSKAKVTKAQPQDIAAYQQQVKQFQPVFDIYQDDGTVLVSEELDNLVDT 115

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVM----DQLKEAKIDELDLHRAIVALSEKMKAVD 102
              F  F+  F S +   ++L SS            E + +      A V          
Sbjct: 116 EVLFKRFVDAFNSSNNKRDFLDSSSEFRAFKAKLETETETETETEAEAEVTRQLYAAWFQ 175

Query: 103 DNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
              + K+D     + + +S  + T E + ++L+ YI  I
Sbjct: 176 KI-TVKQDGIGKQSPYDISLQSTTKESSYSLLNEYIGII 213


>UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI
          Length = 379

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 23/158 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  S    + W+S A VT P        +K   + + L               LD  ID 
Sbjct: 53  ITYSLTAQEWWSSKATVTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDP 112

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104
              F  F+++F +      +++++   +   KE   + +   L        E++K V   
Sbjct: 113 EVIFKRFLQEFNANGTKRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGV--- 169

Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
                        +TLSF +   + + T+LS Y+ +++
Sbjct: 170 ----PVGKKEENIFTLSFQSVDKDSSLTLLSQYVQFVN 203


>UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH
          Length = 377

 Score = 69.8 bits (169), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 23/160 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  +  + + W++ A V+ P+       +++  + + L               LD  ID 
Sbjct: 54  ITYALTVQEWWSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDA 113

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104
              F  F+++F +      ++ ++   ++  K+   K D   L        E++K V   
Sbjct: 114 EVIFKRFLQEFNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGV--- 170

Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 144
                       ++TLSF +     +  +L  Y+ +++ +
Sbjct: 171 ----SIGEKEDGAFTLSFQSVDKISSLALLREYVQFVNQI 206


>UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella
           dagmatis ATCC 43325 RepID=C9PPK9_9PAST
          Length = 282

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 8/144 (5%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR--TEAFNLFIKKFQ 58
              SF++ ++W + A V  P            +  + +             +  F K+  
Sbjct: 34  YAASFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVSGKPTDTTPMDFVYREFKKQAG 93

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S  ++ ++ R++ +     K+   +  D                   +   +  S     
Sbjct: 94  SYDIVVDFWRNTDFYKQ--KQTGENVFDQQEL--ERLANSLGFTPQQAI--NGLSEKIGD 147

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +S T  + ++A  +LS ++DY++
Sbjct: 148 RISLTLGSPKQATELLSDFVDYVN 171


>UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium
           profundum 3TCK RepID=Q1Z8B9_PHOPR
          Length = 349

 Score = 64.0 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----DLDIKIDRTEAFNLFIKK 56
           + +F   + W+S+ ++T         L    + L ++      L+      + F  FI +
Sbjct: 43  IYAFNSQEWWSSSEIITEANYNDLSSLRNDVSPLFIVAAKTEKLEKIFSPNKIFIDFINE 102

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 115
           +       E++ S+  +  ++   K  +E   +  +   S K+K      + K       
Sbjct: 103 YNKPLTKSEFILSNDLLKIKMSNQKLEEEQQKNAFVKFWSNKIKYKKQGDNFK------- 155

Query: 116 TSWTLSFTAPTSEEAQTVLSGYIDYI 141
               L F + ++EE+Q +LS Y  ++
Sbjct: 156 ----LIFESNSAEESQLLLSQYSKFV 177


>UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA
          Length = 352

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRV-----LDLDIKIDRTEAFNLFIK 55
           L++S    Q W S+A +T P+   +     S  +L         L   I+  + +N FI 
Sbjct: 42  LIVSIYSAQWWESSAEITKPQYSDYAVFISSADQLTTGSNPSESLKSIINIEKNYNSFIN 101

Query: 56  KFQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114
              S +   ++L+ S  +           ++   +A+   +EK+        KK+     
Sbjct: 102 ILTSKTNKIDFLQQSNIIKSYFIRDGVKTDIQKDKALDLWAEKIIV------KKESLILN 155

Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYI 141
            +S+ +   A T +++  +L+ YI + 
Sbjct: 156 KSSYIVIAQANTLDDSFKLLNNYIKFT 182


>UniRef50_A7JRK0 Lipopolysaccharide chain length determinant protein n=2
           Tax=Mannheimia haemolytica RepID=A7JRK0_PASHA
          Length = 270

 Score = 57.1 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDI---------KIDRTEAFNLF 53
           +S+  P+KW   A    P            +    L+ +          +    + +  F
Sbjct: 25  LSYTQPEKWKVTAQFEQPTIPDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEF 84

Query: 54  IKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS 113
            +   S  LL+ YL  +  V  + + AK         + A   +    + + +   D   
Sbjct: 85  KRNLTSADLLQAYLLQTEAVKLKAQVAKKSP----AVVAAELVEQFRFEKDMATSADN-- 138

Query: 114 LYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                 +S  A  +EEAQ +L+ +I  ++T
Sbjct: 139 ------VSLIAENAEEAQKLLADFIPLVNT 162


>UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteurella multocida
           RepID=Q9CNG7_PASMU
          Length = 277

 Score = 50.5 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI--DRTEAFNLFIKKFQSVS 61
           S++  + W + A V+ P+           +  + +        +    +  F+K+  S  
Sbjct: 36  SYLKSKTWLAEAHVSAPDIALLGNYYALSSTYQFIKNKENQRQETEIVYQEFLKQLMSEE 95

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           ++  +  ++ Y     K+   D +DL  A++    K        +    +       ++S
Sbjct: 96  MIRRFWENTEYYKQ--KQTGEDHIDL--ALLEKLTKAIKFKSAQTLDVAD-------SVS 144

Query: 122 FTAPTSEEAQTVLSGYIDYIS 142
                 + A  +LS +ID ++
Sbjct: 145 LALENPKLATELLSSFIDQVN 165


>UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinobacillus minor
           RepID=C5S436_9PAST
          Length = 256

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 22/152 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID---------RTEAFN 51
              +   P +W ++A    P+  +       F+   ++  D                ++ 
Sbjct: 20  FAGAKFQPTQWQASAQFEHPQTAELGNYLTLFSTYHLISGDTAAADISKMEAKAAEASYT 79

Query: 52  LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 111
            F K  QS   L ++L +S  V  Q K   I E  + + +    +     +         
Sbjct: 80  EFKKNIQSQEKLAQFLTNSALVKAQAKIEGISEQAMVQQLSKHFQFTSGNNQPD------ 133

Query: 112 PSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                  TLS T+ +++EA  +   Y+ Y++T
Sbjct: 134 -------TLSLTSFSTQEADNLFGEYLRYVNT 158


>UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica
           RepID=WZZB_SALTY
          Length = 327

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 31/137 (22%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
              I  +KWTS A++T P+  Q      +   L   +       +E    FI +F S   
Sbjct: 48  YLMIAKEKWTSTAIITQPDAAQVATYTNALNVLYGGNAPKI---SEVQANFISRFSS--- 101

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
              +          L E   ++ +  +  +  S K +A+                 ++S+
Sbjct: 102 --AF--------SALSEVLDNQKEREKLTIEQSVKGQAL---------------PLSVSY 136

Query: 123 TAPTSEEAQTVLSGYID 139
            + T+E AQ  L+ YI 
Sbjct: 137 VSTTAEGAQRRLAEYIQ 153


>UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinobacillus
           pleuropneumoniae RepID=A3N2K1_ACTP2
          Length = 292

 Score = 44.3 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 36/167 (21%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD----LDIKI------------ 44
             +S +  Q W + A   PP+          F+    L+    +   +            
Sbjct: 21  FGLSSLDTQTWKATAEFEPPKVSTLGNYYTLFSTYTFLNGGDGVSYNVIADDKGSLSLAP 80

Query: 45  -------DRTEA--FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALS 95
                  D      +N F +   S  +L E+L  +  V  + +      L     ++   
Sbjct: 81  EIGRKAEDSATLGSYNEFKRNLISTDVLVEFLTQTETVKLKAQ------LTHQPIVMTAQ 134

Query: 96  EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
              +     A+ K          +LS  +   EEA  +L+ +I + +
Sbjct: 135 SLAEQFVFQAATK-----TQPFDSLSVRSANPEEAYKLLNDFIAFAN 176


>UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter
           caesariensis RepID=Q2BJF5_9GAMM
          Length = 353

 Score = 44.0 bits (102), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 15/144 (10%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR----TEAFNLFIKKF 57
             SF+    + S+AV+  P      E+ K  T L+ +            T+ F  FI   
Sbjct: 44  AYSFLSTPIYQSSAVLASPSESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISAL 103

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S      +L                            +  K  +        +      
Sbjct: 104 NSNRYKNSFL-----------SKPELLDHFRNDNTTQLQARKEFNRALKVTLPDTEEINH 152

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYI 141
            T+S    + E + + L+ YI + 
Sbjct: 153 ITISLRTKSPELSSSWLNEYISFA 176


>UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae
           RepID=WZZB3_ECOLX
          Length = 325

 Score = 41.6 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 33/138 (23%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDL-DIKIDRTEAFNLFIKKFQSVS 61
              +  +KWTS A++T P+  Q      +   +       +   +      F   F +  
Sbjct: 48  YLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSA-- 105

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
                          L E   ++ +  +  +  S K + +                 T+S
Sbjct: 106 ---------------LAETLDNQEEPEKLTIEPSVKNQQL---------------PLTVS 135

Query: 122 FTAPTSEEAQTVLSGYID 139
           +   T+E AQ  L+ YI 
Sbjct: 136 YVGQTAEGAQMKLAQYIQ 153


>UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas
           entomophila L48 RepID=Q1ID96_PSEE4
          Length = 346

 Score = 40.1 bits (92), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 47/137 (34%), Gaps = 13/137 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L+  F +P ++ +     PP      +L         L L   I   + ++ +++   S 
Sbjct: 42  LVYVFYVPSRYEAKLFTIPPTQNDIAQLNYGRGGSAELPL---ISVGDVYSSYVRNLNSE 98

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           S+  E+  +  Y     ++ K     L   +        ++       +        + +
Sbjct: 99  SMRMEFF-NDVYFPSLAEKQKT---SLRSDLYRQFFAALSI------LQGGKDQSDRYLI 148

Query: 121 SFTAPTSEEAQTVLSGY 137
           + ++ + EEA   +  Y
Sbjct: 149 TASSSSPEEAAKWVKQY 165


>UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influenzae
           RepID=A4NGY6_HAEIN
          Length = 136

 Score = 38.2 bits (87), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 9/114 (7%)

Query: 8   PQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI---------DRTEAFNLFIKKFQ 58
           P KW   A    P+  +       F+   ++  D                A + F K   
Sbjct: 22  PTKWQVRAQFEAPKINELGNYFSLFSTYSLVSGDADTVDMVKIERKATDSANHEFTKILT 81

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           S + L  +L  S +V  + K        +        E        +S  +++ 
Sbjct: 82  SSAQLMAFLNQSDFVKARAKVENETIQQIASHFKFSQENNLNQLILSSFDREDM 135


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.309    0.129    0.318 

Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 655,494,308
Number of Sequences: 3077464
Number of extensions: 17412452
Number of successful extensions: 86340
Number of sequences better than 1.0e-01: 54
Number of HSP's better than  0.1 without gapping: 59
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 86171
Number of HSP's gapped (non-prelim): 114
length of query: 144
length of database: 1,040,396,356
effective HSP length: 108
effective length of query: 36
effective length of database: 708,030,244
effective search space: 25489088784
effective search space used: 25489088784
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 87 (38.2 bits)
