BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (144 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10...   151   8e-36
UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers...   150   1e-35
UniRef50_P26266 Ferric enterobactin transport protein fepE n=158...   149   3e-35
UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini...   141   7e-33
UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T...   137   1e-31
UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter...   137   1e-31
UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T...   136   2e-31
UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr...   126   2e-28
UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide...   126   2e-28
UniRef50_C4K3Z7 Regulator of length of O-antigen component of li...   122   2e-27
UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep...   122   3e-27
UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei...   119   2e-26
UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T...   117   1e-25
UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C...   116   2e-25
UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=...   114   9e-25
UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En...   114   1e-24
UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1...   110   1e-23
UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete...   110   1e-23
UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=...   105   4e-22
UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom...   105   4e-22
UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba...   104   1e-21
UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T...   102   3e-21
UniRef50_A5KZS4 Regulator of length of O-antigen component of li...    98   9e-20
UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T...    94   1e-18
UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ...    91   1e-17
UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannhei...    90   2e-17
UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi...    88   7e-17
UniRef50_A1SRR6 Chain length determinant protein-like protein n=...    83   2e-15
UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn...    77   2e-13
UniRef50_C9P0E2 Regulator of length of O-antigen component of li...    72   4e-12
UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0...    71   1e-11
UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re...    70   3e-11
UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1...    65   6e-10
UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph...    64   1e-09
UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T...    57   1e-07
UniRef50_A7JRK0 Lipopolysaccharide chain length determinant prot...    57   2e-07
UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteur...    51   2e-05
UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinob...    50   2e-05
UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon...    46   4e-04
UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinob...    44   0.001
UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni...    44   0.001
UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter...    42   0.008
UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n...    40   0.020
UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influe...    38   0.093

>UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia
           RepID=C4UHK4_YERRU
          Length = 384

 Score =  151 bits (380), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 77/143 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS +++ P    Q Q L+K    L VLD+++ I      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K++  D ++    I  +        +    K    + Y  + L
Sbjct: 118 DLREQYLINTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           S++A T+ +A+ +L GYI+++++
Sbjct: 178 SYSASTAVDARDLLQGYINFVNS 200


>UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia
           RepID=A4TP85_YERPP
          Length = 383

 Score =  150 bits (379), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 77/144 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS A++  P   Q Q L++  T L VLD+ + +      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K    D LD    I  +  +  +  +    K +  + Y  + L
Sbjct: 118 DLREQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           S++A T  +A+ +L G I+Y++T+
Sbjct: 178 SYSASTPTDARDLLQGSINYVNTI 201


>UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular
           organisms RepID=FEPE_ECOLI
          Length = 377

 Score =  149 bits (375), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV
Sbjct: 55  LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL
Sbjct: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           SFTAPTSEEAQTVLSGYIDYISTL
Sbjct: 175 SFTAPTSEEAQTVLSGYIDYISTL 198


>UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4SZ47_YERIN
          Length = 372

 Score =  141 bits (355), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 69/141 (48%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++ F LPQKWTS++V+  P   +   L+    +L+V  +D  ID       +++   S 
Sbjct: 55  LIVGFFLPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L + +L+ + Y+   +K+   DE      +  +S      + NA+ K         + L
Sbjct: 115 ILRDAFLQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYI 141
            F+A T + A+ +L GY++Y+
Sbjct: 175 KFSAQTPDSAKDLLQGYMNYV 195


>UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter
           RepID=C9XZM2_CROTZ
          Length = 377

 Score =  137 bits (345), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/142 (45%), Positives = 95/142 (66%), Gaps = 1/142 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L ++F+LPQKWTS AVV+ PE  Q  EL++    L+VLD+D  ID     N+F+KKF S 
Sbjct: 55  LALAFLLPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           +L E++LR+SP+V  Q+KEA+ D   L RA+  ++++   +  N + K    S Y+SWTL
Sbjct: 115 ALQEKFLRTSPWVQAQVKEAQSDTESLERAVTLVAQR-IKMTSNDNPKAPTASPYSSWTL 173

Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142
           SFTAP +++AQ VL  YI+Y +
Sbjct: 174 SFTAPKAQDAQRVLKEYINYAA 195


>UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae
           RepID=B4F1Q0_PROMH
          Length = 372

 Score =  137 bits (344), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             ++  LPQKWTS A +T P   + ++L  +   L ++D+D  ++ +  +  FI  + S 
Sbjct: 57  FTVASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSR 116

Query: 61  SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            L EEYL ++ Y  + L +      LD  + I  +  K   +  +   K  +        
Sbjct: 117 VLREEYLVNTDYYKNLLAKMDDPTPLDKRKLIETIVTKDINLKASD-SKNSDEEFSGEIN 175

Query: 120 LSFTAPTSEEAQTVLSGYIDYIST 143
           LSFTAPTSEEA  +LSGYI +IST
Sbjct: 176 LSFTAPTSEEAYDLLSGYIRFIST 199


>UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella
           RepID=C5BCN1_EDWI9
          Length = 357

 Score =  136 bits (342), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             +  +LPQKWTS A + P +  +   +     +L +LD+ +          F++ ++S 
Sbjct: 43  FAVKTLLPQKWTSYAELIPAQARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQ 102

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            +  EY+  + Y       A  D L   R + +L++K   + ++   +  E   YT + L
Sbjct: 103 IVRREYIAQTDYYKTLAA-ALSDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRL 161

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
             +A +S+EA  +L GYID+++ 
Sbjct: 162 GVSARSSQEAHALLQGYIDFVAA 184


>UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia
           RepID=D1P4F6_9ENTR
          Length = 375

 Score =  126 bits (317), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           +   LPQKWTS A++  P   + +E+ +   +L  LD +I +     +N FI +++S   
Sbjct: 59  VVKTLPQKWTSEAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVN 118

Query: 63  LEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            E+Y+RS+ Y    L +   K D  +  R +  +      +  NA +K  + S      L
Sbjct: 119 QEDYVRSTEYYQSLLAKLGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDDS---DIIL 175

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           SFTAPT+ EAQ +L+GYI Y ++
Sbjct: 176 SFTAPTAIEAQDLLNGYIRYTAS 198


>UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q4F4_PROST
          Length = 372

 Score =  126 bits (316), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           + + F LPQKW+S AVV PP   + +++     +L VLD+ I +   + FN FI +++S 
Sbjct: 57  IFVVFQLPQKWSSTAVVIPPSSEEIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSK 116

Query: 61  SLLEEYLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
              E Y+RS+ Y     +   +   E +  R +  +      + D + +K    S  +  
Sbjct: 117 VNQEAYVRSTNYFKKLSEQVNSTDKENEQQRLVNTIISNNIGLKDQSKEKN---STSSDI 173

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            L+F APT  EAQ +LSGY+ Y +T
Sbjct: 174 ILTFVAPTPSEAQDLLSGYVRYTAT 198


>UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5
          Length = 308

 Score =  122 bits (307), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 4/143 (2%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
           LI + LP+KWTS A++T  +  Q Q  E    KL++ D+ +  D+    +LFI+ F S  
Sbjct: 62  LICYKLPEKWTSKAIITYIDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNV 121

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           L E+YL ++ Y    +K+   +       I     K   ++ + S K+++   Y  +TLS
Sbjct: 122 LKEKYLVNTSYFQKLIKDHPENRNQFMLDI----IKNIHIEYSKSNKENDFKGYVFYTLS 177

Query: 122 FTAPTSEEAQTVLSGYIDYISTL 144
           ++A T+++AQ +L+GYI+YIS +
Sbjct: 178 YSADTAKDAQNLLNGYINYISAI 200


>UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia
           rettgeri DSM 1131 RepID=UPI000197BC0B
          Length = 379

 Score =  122 bits (306), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 6   ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65
           +LPQKW+S A+V PP   + +E+     +L VLD+ I +     FN F+ +++S    E 
Sbjct: 69  LLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQES 128

Query: 66  YLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 123
           Y+RS+ Y  +  +  + K D +   R + ++      + D + +K    S      LSFT
Sbjct: 129 YIRSTDYYHNLAEKIDPKDDVIAQQRLVNSIISNDIKIQDLSKEKN---STSNDIVLSFT 185

Query: 124 APTSEEAQTVLSGYIDYIST 143
           AP   EAQ +L GYI Y ++
Sbjct: 186 APLPTEAQDLLEGYIRYSAS 205


>UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65UU8_MANSM
          Length = 396

 Score =  119 bits (299), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A    P+            +    L + +   K      FN F    
Sbjct: 67  IYAFTAKEQWTSKATTIAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVAL 126

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S ++  E+   S +  +   E   DE    + +  + +K   V     KK         
Sbjct: 127 FSNNMKREFFAQSKWFQNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALG--- 183

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
             +SF A T +EAQ VL+ YI++I+ 
Sbjct: 184 INISFAAETPKEAQEVLTEYINFINA 209


>UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae
           RepID=A7JUL8_PASHA
          Length = 375

 Score =  117 bits (292), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A V  P+  +  E      +    LRV  +D        FN F +  
Sbjct: 44  IYAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLA 103

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
           QS     E+  +S            DE      +  LS +  +     +KK         
Sbjct: 104 QSQDTKNEFFITSNVYKTLA--EGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGR-- 159

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
            TLSF+A T  EAQ  L   + +I++
Sbjct: 160 -TLSFSAETPMEAQDTLGKLVQFINS 184


>UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST
          Length = 378

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   ++WTS A V  P+           K + ++   + D        F  F    +
Sbjct: 43  IYAFTAKEQWTSKAEVIAPKVTDLGSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSE 102

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+    E+   S      ++    DE      +  L+ +  A+     KK+ +       
Sbjct: 103 SLDERNEFFVQSDVYKKLIE--GKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGR--- 157

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF A T E+AQ  L  +I + S
Sbjct: 158 RISFLAETPEDAQLTLEKFIAFTS 181


>UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus
           succinogenes 130Z RepID=A6VMI6_ACTSZ
          Length = 346

 Score =  114 bits (285), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL----RVLDLDIKIDRTEAFNLFIKKF 57
           + +F   +KWTS A V  P  V       +  +     ++ D+ +       +  F +  
Sbjct: 45  IYAFTATEKWTSTAEVIAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLA 104

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S +    +   S      +++   DE    + + AL+ +  AV     KK  +      
Sbjct: 105 FSQNERRNFFSQSDEYKGLIQD--QDEKAQRKILSALTTEYTAVVRPDPKKNADMFGN-- 160

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142
             +SF+A T E AQ  L+ ++D+I+
Sbjct: 161 -KISFSAQTPENAQKTLAQFVDFIN 184


>UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae
           RepID=Q7N0P7_PHOLL
          Length = 367

 Score =  114 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
            + + ++PQKW+S+A +  P+  + Q L+   TKL VL+L   +  +  +N F+  F S 
Sbjct: 55  FVAASLMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            L EEYL ++ Y  + + E+     L   + I  +     +    +S K ++        
Sbjct: 115 VLREEYLVNTEYFKNLVAESGDHSPLVKRKLIEKIVNDNIS----SSSKAEKDDENGETK 170

Query: 120 LSFTAPTSEEAQTVLSGYIDYISTL 144
           L+F+A T+E+A  +L+GYIDY+S++
Sbjct: 171 LTFSAGTAEDAYNLLNGYIDYVSSV 195


>UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174
           Tax=Enterobacteriaceae RepID=WZZE_ECO57
          Length = 348

 Score =  110 bits (276), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 19/150 (12%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTE-------AFNLF 53
           L  +F   Q+W+S A+   P              LR LD+   +   +       A+  F
Sbjct: 45  LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEF 104

Query: 54  IKKFQSVSLLEEYLRSSPYVMDQLK-EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           + +  S     E+   + Y   ++   +K D      A++               +    
Sbjct: 105 VMQLASWDTRREFWLQTDYYKQRMVGNSKADA-----ALLDEMINNIQFIPGDFTRAVND 159

Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
           S      +   A T+ +A  +L  Y+ + S
Sbjct: 160 S------VKLIAETAPDANNLLRQYVAFAS 183


>UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans
           RepID=Q9JRS3_AGGAC
          Length = 369

 Score =  110 bits (275), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           +  F   ++WTS A +  P   +  +    +K + ++   + D  +     F  F    +
Sbjct: 40  IYVFTAKEQWTSKAEIIAPRITELGDYFLVKKEYARILGSEFDASMTANNLFGQFNLLSE 99

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+   +++   S +     +     E +  + +  L  K  A+    +KK  +       
Sbjct: 100 SLDERKKFFEKSDFYKK--ESEGKSEREKLQILFDLMTKNIAIKKPDTKKYPDLIGN--- 154

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF A T  EAQ VLS +I  ++
Sbjct: 155 QISFYAETPIEAQNVLSKFISTVN 178


>UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis
           DSM 9187 RepID=C4L7N8_TOLAT
          Length = 372

 Score =  105 bits (262), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR---------TEAFNL 52
           + +F   + WTS AV   P+  +     +   +LR       I            E F  
Sbjct: 55  IYAFTAEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTE 114

Query: 53  FIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           F K+  S+ L  E+   S Y  + +   K  E D  + +  L EK   V     +K   P
Sbjct: 115 FQKQTNSIDLRREFWSQSDYYHNLVINIKS-EKDKEKKLDDLIEKNITVVPIDEQKVKFP 173

Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
           S      +S +   +  A+ +L  Y+D ++ 
Sbjct: 174 S------VSLSVNDATTAKELLIQYVDKLNA 198


>UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila
           RepID=Q8KNM2_AERHY
          Length = 362

 Score =  105 bits (262), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKKFQ 58
            + + PQ W S + + PP   + + LE    +L    +   I    ++   +  F+  F 
Sbjct: 57  YALLAPQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFN 116

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S +   ++L    Y+    + A I +    RA++       +     +   +        
Sbjct: 117 SFNNKRQFLIEKGYLDMDAEAAGITDDKGKRALLRKMVNGISAVALDAPSDN-------I 169

Query: 119 TLSFTAPTSEEAQTVLSGYIDYI 141
           TLSF A T+ EAQ  L  YI +I
Sbjct: 170 TLSFGAATATEAQQRLEQYIAFI 192


>UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2C7A7_9GAMM
          Length = 351

 Score =  104 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR----VLDLDIKIDRTEAFNLFIKK 56
           ++ +    Q WTS A VT  +      +    T L     V  ++   +     N FI +
Sbjct: 43  IVYALTAQQWWTSDATVTRGQYKDTANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITE 102

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116
           F +    + +L  +  +    K+  +++ D  + I   ++K        +   DE     
Sbjct: 103 FNAFDNKKAFLEQNSIIEQYAKDDGVNKEDKGKFIAFWAKK------IDASLNDEKKRPN 156

Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIS 142
            + LSF A +SE A  +L  Y  +I+
Sbjct: 157 VYKLSFEARSSEAAHDLLKAYSSFIT 182


>UniRef50_Q3YTC2 O antigen chain length determinant protein n=5
           Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS
          Length = 346

 Score =  102 bits (254), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 9/144 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   ++WT+   +  P   +        +++ ++    LD        F+  I   +
Sbjct: 37  VYAFTAKEQWTAKTYIQAPRIAELGSYLKFHQAYARILNQPLDTNALANGLFSDLILIAE 96

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S     ++L S+ Y   +       E D    +   + K   +     K        + +
Sbjct: 97  SPDTKVKFLESTEYYKKE-TNNLSTEQDKKIWLAEQANKGLVITPPKEKGNT-----SYY 150

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +  +A +++EA  +L GY+  ++
Sbjct: 151 IIQASADSAQEAYKLLQGYLKNVN 174


>UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Vibrionales bacterium SWAT-3
           RepID=A5KZS4_9GAMM
          Length = 358

 Score = 97.9 bits (242), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  + +  + W+S+A +T  +P      ++   + + +              +LD  +D 
Sbjct: 36  IAFALLAQEWWSSSAKITKAQPQNLAAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDS 95

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 106
              F  FI  F S +    +L +S     + K +            A + + +  +  ++
Sbjct: 96  KVLFQRFINAFNSTNNKRSFLDNSAEFQ-EFKSSMAVGSSDMSVDEARAFRAEWFNRISA 154

Query: 107 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 138
              D     + +T++F   T E +  +L+ YI
Sbjct: 155 FTADNKGPNSPYTINFQTMTKESSFELLAAYI 186


>UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           angustum S14 RepID=Q1ZRK1_PHOAS
          Length = 347

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-----LDIKIDRTEAFNLFIKKF 57
            ++     WTS AV+T  +    +   ++   L V       +   +D       F+  F
Sbjct: 48  YAYYAQSWWTSTAVITTNKARDIRIFSENIDNLYVNSGVGGLVSQALDEKRLLRTFVNYF 107

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            + +   E+L  +  +       K     L R I  +           + +K        
Sbjct: 108 NAYNNKLEFLEGNKSIKSDFINEKEKHDFLQRFIKRI-----------NSEKVGNDSQVL 156

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142
           ++LS+TA +S ++  +LS YI++I+
Sbjct: 157 YSLSYTATSSIKSHDLLSEYINFIN 181


>UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32
           RepID=B7VHQ6_VIBSL
          Length = 374

 Score = 91.0 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 15/153 (9%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTE 48
            + +  + W+S A +T  E       E+   K + +              +LD  +D   
Sbjct: 54  FALLAQEWWSSEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQI 113

Query: 49  AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKK 108
            F  F+  F S +  + +L  S     ++K+                   +  +  ++  
Sbjct: 114 IFQRFVDLFNSSNNKKAFLDESSEFQ-EIKDDSFSSASEVTEDTTRKLYTEWFERISASL 172

Query: 109 KDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
           +D+    + + L+F A T E +  +LS YI + 
Sbjct: 173 RDKKDTSSPYILTFQATTKESSFDLLSSYISFT 205


>UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65U41_MANSM
          Length = 260

 Score = 89.8 bits (221), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-LDIKIDR-TEAFNLFIKKFQSVS 61
           S++    WT  + +  P   +       ++  ++L+      D   + FN F +   S  
Sbjct: 34  SYLAKNLWTVQSSLEKPALTELGNYYSLYSTYQLLNNEKANQDPTGDIFNRFKQLAGSYE 93

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
             + +  ++ Y   +L     D     + +  LS ++K +D NA+  +          LS
Sbjct: 94  HAKVFWENTDYYKQKL---TDDSQHDSQLLDQLSREIKLLDTNAATTQ----------LS 140

Query: 122 FTAPTSEEAQTVLSGYIDYI 141
                 + A+ +L+ YIDY 
Sbjct: 141 LELDNPKRARELLTEYIDYT 160


>UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia
           RepID=A1JMR4_YERE8
          Length = 363

 Score = 88.3 bits (217), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 23/140 (16%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           + F  P++WTS A+V+     + Q LE   + L VL++D+ I   +    F K + S  +
Sbjct: 58  VVFFSPKEWTSYAIVSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKDM 117

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
           L +Y+                  +   A      K K ++ ++  K +       + L++
Sbjct: 118 LSKYM----------------SKEKVNANNFAGLKGKNINSDSDVKGN-------YILTY 154

Query: 123 TAPTSEEAQTVLSGYIDYIS 142
           ++      + V +GY++YI+
Sbjct: 155 SSNLEYGLKDVFTGYVNYIN 174


>UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas
           RepID=A1SRR6_PSYIN
          Length = 347

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 24/163 (14%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----------------------D 39
            +    + W +   V  P+      L     K+  +                       +
Sbjct: 13  YALNAQEWWVAKGKVIAPQVNDVAALYAQSNKVSAILNSNDLLNSNSNNNGQDTKQVSKE 72

Query: 40  LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMK 99
           L    + +  F  FI  F S    + +L ++P  +  L+  +I       A  +  + + 
Sbjct: 73  LVDLFEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKGSAQESRQQYLI 132

Query: 100 AVDDNASK-KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
            +++  +K      S  +   LSF + T E +  +L+ YI +I
Sbjct: 133 VLNNWMNKINASLNSQTSELALSFRSATKESSAELLNEYILFI 175


>UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae
           RepID=B0BR52_ACTPJ
          Length = 370

 Score = 76.7 bits (187), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   +KWTS   V  P      E     K +  +   +      R E   LF +   
Sbjct: 44  VYAFTAKEKWTSQTEVIAPRVTDISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVL 103

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S      + +++            +E+ L RA+   + +   V    +KK       +  
Sbjct: 104 SYDEAIAFFKTTDTYKKLA--ETENEVGLQRAVAEFTTESLKVIKPDAKKDPNALG-SKI 160

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF   T+  AQT L+ +I +IS
Sbjct: 161 AISF--DTALSAQTTLNDFICHIS 182


>UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450
           RepID=C9P0E2_9VIBR
          Length = 383

 Score = 72.5 bits (176), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           ++ +    + W+S A VT  +P      ++   + + +              +LD  +D 
Sbjct: 56  VVFALNSQEWWSSKAKVTKAQPQDIAAYQQQVKQFQPVFDIYQDDGTVLVSEELDNLVDT 115

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVM----DQLKEAKIDELDLHRAIVALSEKMKAVD 102
              F  F+  F S +   ++L SS            E + +      A V          
Sbjct: 116 EVLFKRFVDAFNSSNNKRDFLDSSSEFRAFKAKLETETETETETEAEAEVTRQLYAAWFQ 175

Query: 103 DNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
              + K+D     + + +S  + T E + ++L+ YI  I
Sbjct: 176 KI-TVKQDGIGKQSPYDISLQSTTKESSYSLLNEYIGII 213


>UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI
          Length = 379

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 23/158 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  S    + W+S A VT P        +K   + + L               LD  ID 
Sbjct: 53  ITYSLTAQEWWSSKATVTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDP 112

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104
              F  F+++F +      +++++   +   KE   + +   L        E++K V   
Sbjct: 113 EVIFKRFLQEFNANGTKRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGV--- 169

Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
                        +TLSF +   + + T+LS Y+ +++
Sbjct: 170 ----PVGKKEENIFTLSFQSVDKDSSLTLLSQYVQFVN 203


>UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH
          Length = 377

 Score = 69.8 bits (169), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 23/160 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  +  + + W++ A V+ P+       +++  + + L               LD  ID 
Sbjct: 54  ITYALTVQEWWSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDA 113

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104
              F  F+++F +      ++ ++   ++  K+   K D   L        E++K V   
Sbjct: 114 EVIFKRFLQEFNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGV--- 170

Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 144
                       ++TLSF +     +  +L  Y+ +++ +
Sbjct: 171 ----SIGEKEDGAFTLSFQSVDKISSLALLREYVQFVNQI 206


>UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella
           dagmatis ATCC 43325 RepID=C9PPK9_9PAST
          Length = 282

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 8/144 (5%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR--TEAFNLFIKKFQ 58
              SF++ ++W + A V  P            +  + +             +  F K+  
Sbjct: 34  YAASFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVSGKPTDTTPMDFVYREFKKQAG 93

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S  ++ ++ R++ +     K+   +  D                   +   +  S     
Sbjct: 94  SYDIVVDFWRNTDFYKQ--KQTGENVFDQQEL--ERLANSLGFTPQQAI--NGLSEKIGD 147

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +S T  + ++A  +LS ++DY++
Sbjct: 148 RISLTLGSPKQATELLSDFVDYVN 171


>UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium
           profundum 3TCK RepID=Q1Z8B9_PHOPR
          Length = 349

 Score = 64.0 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----DLDIKIDRTEAFNLFIKK 56
           + +F   + W+S+ ++T         L    + L ++      L+      + F  FI +
Sbjct: 43  IYAFNSQEWWSSSEIITEANYNDLSSLRNDVSPLFIVAAKTEKLEKIFSPNKIFIDFINE 102

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 115
           +       E++ S+  +  ++   K  +E   +  +   S K+K      + K       
Sbjct: 103 YNKPLTKSEFILSNDLLKIKMSNQKLEEEQQKNAFVKFWSNKIKYKKQGDNFK------- 155

Query: 116 TSWTLSFTAPTSEEAQTVLSGYIDYI 141
               L F + ++EE+Q +LS Y  ++
Sbjct: 156 ----LIFESNSAEESQLLLSQYSKFV 177


>UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA
          Length = 352

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRV-----LDLDIKIDRTEAFNLFIK 55
           L++S    Q W S+A +T P+   +     S  +L         L   I+  + +N FI 
Sbjct: 42  LIVSIYSAQWWESSAEITKPQYSDYAVFISSADQLTTGSNPSESLKSIINIEKNYNSFIN 101

Query: 56  KFQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114
              S +   ++L+ S  +           ++   +A+   +EK+        KK+     
Sbjct: 102 ILTSKTNKIDFLQQSNIIKSYFIRDGVKTDIQKDKALDLWAEKIIV------KKESLILN 155

Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYI 141
            +S+ +   A T +++  +L+ YI + 
Sbjct: 156 KSSYIVIAQANTLDDSFKLLNNYIKFT 182


>UniRef50_A7JRK0 Lipopolysaccharide chain length determinant protein n=2
           Tax=Mannheimia haemolytica RepID=A7JRK0_PASHA
          Length = 270

 Score = 57.1 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDI---------KIDRTEAFNLF 53
           +S+  P+KW   A    P            +    L+ +          +    + +  F
Sbjct: 25  LSYTQPEKWKVTAQFEQPTIPDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEF 84

Query: 54  IKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS 113
            +   S  LL+ YL  +  V  + + AK         + A   +    + + +   D   
Sbjct: 85  KRNLTSADLLQAYLLQTEAVKLKAQVAKKSP----AVVAAELVEQFRFEKDMATSADN-- 138

Query: 114 LYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                 +S  A  +EEAQ +L+ +I  ++T
Sbjct: 139 ------VSLIAENAEEAQKLLADFIPLVNT 162


>UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteurella multocida
           RepID=Q9CNG7_PASMU
          Length = 277

 Score = 50.5 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI--DRTEAFNLFIKKFQSVS 61
           S++  + W + A V+ P+           +  + +        +    +  F+K+  S  
Sbjct: 36  SYLKSKTWLAEAHVSAPDIALLGNYYALSSTYQFIKNKENQRQETEIVYQEFLKQLMSEE 95

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           ++  +  ++ Y     K+   D +DL  A++    K        +    +       ++S
Sbjct: 96  MIRRFWENTEYYKQ--KQTGEDHIDL--ALLEKLTKAIKFKSAQTLDVAD-------SVS 144

Query: 122 FTAPTSEEAQTVLSGYIDYIS 142
                 + A  +LS +ID ++
Sbjct: 145 LALENPKLATELLSSFIDQVN 165


>UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinobacillus minor
           RepID=C5S436_9PAST
          Length = 256

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 22/152 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID---------RTEAFN 51
              +   P +W ++A    P+  +       F+   ++  D                ++ 
Sbjct: 20  FAGAKFQPTQWQASAQFEHPQTAELGNYLTLFSTYHLISGDTAAADISKMEAKAAEASYT 79

Query: 52  LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 111
            F K  QS   L ++L +S  V  Q K   I E  + + +    +     +         
Sbjct: 80  EFKKNIQSQEKLAQFLTNSALVKAQAKIEGISEQAMVQQLSKHFQFTSGNNQPD------ 133

Query: 112 PSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                  TLS T+ +++EA  +   Y+ Y++T
Sbjct: 134 -------TLSLTSFSTQEADNLFGEYLRYVNT 158


>UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica
           RepID=WZZB_SALTY
          Length = 327

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 31/137 (22%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
              I  +KWTS A++T P+  Q      +   L   +       +E    FI +F S   
Sbjct: 48  YLMIAKEKWTSTAIITQPDAAQVATYTNALNVLYGGNAPKI---SEVQANFISRFSS--- 101

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
              +          L E   ++ +  +  +  S K +A+                 ++S+
Sbjct: 102 --AF--------SALSEVLDNQKEREKLTIEQSVKGQAL---------------PLSVSY 136

Query: 123 TAPTSEEAQTVLSGYID 139
            + T+E AQ  L+ YI 
Sbjct: 137 VSTTAEGAQRRLAEYIQ 153


>UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinobacillus
           pleuropneumoniae RepID=A3N2K1_ACTP2
          Length = 292

 Score = 44.3 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 36/167 (21%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD----LDIKI------------ 44
             +S +  Q W + A   PP+          F+    L+    +   +            
Sbjct: 21  FGLSSLDTQTWKATAEFEPPKVSTLGNYYTLFSTYTFLNGGDGVSYNVIADDKGSLSLAP 80

Query: 45  -------DRTEA--FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALS 95
                  D      +N F +   S  +L E+L  +  V  + +      L     ++   
Sbjct: 81  EIGRKAEDSATLGSYNEFKRNLISTDVLVEFLTQTETVKLKAQ------LTHQPIVMTAQ 134

Query: 96  EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
              +     A+ K          +LS  +   EEA  +L+ +I + +
Sbjct: 135 SLAEQFVFQAATK-----TQPFDSLSVRSANPEEAYKLLNDFIAFAN 176


>UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter
           caesariensis RepID=Q2BJF5_9GAMM
          Length = 353

 Score = 44.0 bits (102), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 15/144 (10%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR----TEAFNLFIKKF 57
             SF+    + S+AV+  P      E+ K  T L+ +            T+ F  FI   
Sbjct: 44  AYSFLSTPIYQSSAVLASPSESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISAL 103

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S      +L                            +  K  +        +      
Sbjct: 104 NSNRYKNSFL-----------SKPELLDHFRNDNTTQLQARKEFNRALKVTLPDTEEINH 152

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYI 141
            T+S    + E + + L+ YI + 
Sbjct: 153 ITISLRTKSPELSSSWLNEYISFA 176


>UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae
           RepID=WZZB3_ECOLX
          Length = 325

 Score = 41.6 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 33/138 (23%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDL-DIKIDRTEAFNLFIKKFQSVS 61
              +  +KWTS A++T P+  Q      +   +       +   +      F   F +  
Sbjct: 48  YLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSA-- 105

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
                          L E   ++ +  +  +  S K + +                 T+S
Sbjct: 106 ---------------LAETLDNQEEPEKLTIEPSVKNQQL---------------PLTVS 135

Query: 122 FTAPTSEEAQTVLSGYID 139
           +   T+E AQ  L+ YI 
Sbjct: 136 YVGQTAEGAQMKLAQYIQ 153


>UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas
           entomophila L48 RepID=Q1ID96_PSEE4
          Length = 346

 Score = 40.1 bits (92), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 47/137 (34%), Gaps = 13/137 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L+  F +P ++ +     PP      +L         L L   I   + ++ +++   S 
Sbjct: 42  LVYVFYVPSRYEAKLFTIPPTQNDIAQLNYGRGGSAELPL---ISVGDVYSSYVRNLNSE 98

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           S+  E+  +  Y     ++ K     L   +        ++       +        + +
Sbjct: 99  SMRMEFF-NDVYFPSLAEKQKT---SLRSDLYRQFFAALSI------LQGGKDQSDRYLI 148

Query: 121 SFTAPTSEEAQTVLSGY 137
           + ++ + EEA   +  Y
Sbjct: 149 TASSSSPEEAAKWVKQY 165


>UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influenzae
           RepID=A4NGY6_HAEIN
          Length = 136

 Score = 38.2 bits (87), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 9/114 (7%)

Query: 8   PQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI---------DRTEAFNLFIKKFQ 58
           P KW   A    P+  +       F+   ++  D                A + F K   
Sbjct: 22  PTKWQVRAQFEAPKINELGNYFSLFSTYSLVSGDADTVDMVKIERKATDSANHEFTKILT 81

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           S + L  +L  S +V  + K        +        E        +S  +++ 
Sbjct: 82  SSAQLMAFLNQSDFVKARAKVENETIQQIASHFKFSQENNLNQLILSSFDREDM 135


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers...   144   9e-34
UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10...   142   2e-33
UniRef50_P26266 Ferric enterobactin transport protein fepE n=158...   140   1e-32
UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter...   133   2e-30
UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini...   131   8e-30
UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T...   131   1e-29
UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T...   126   3e-28
UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr...   120   2e-26
UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei...   119   3e-26
UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide...   118   5e-26
UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C...   116   3e-25
UniRef50_C4K3Z7 Regulator of length of O-antigen component of li...   116   3e-25
UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T...   115   5e-25
UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1...   114   1e-24
UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=...   112   3e-24
UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep...   112   5e-24
UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba...   110   2e-23
UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En...   107   9e-23
UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete...   107   1e-22
UniRef50_A5KZS4 Regulator of length of O-antigen component of li...   107   2e-22
UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re...   104   7e-22
UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=...   104   8e-22
UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0...   104   8e-22
UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T...   104   1e-21
UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom...   103   2e-21
UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ...   101   7e-21
UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1...    99   5e-20
UniRef50_C9P0E2 Regulator of length of O-antigen component of li...    98   9e-20
UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T...    96   2e-19
UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn...    95   7e-19
UniRef50_A1SRR6 Chain length determinant protein-like protein n=...    95   8e-19
UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannhei...    94   2e-18
UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph...    91   1e-17
UniRef50_A7JRK0 Lipopolysaccharide chain length determinant prot...    86   3e-16
UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinob...    85   8e-16
UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteur...    84   1e-15
UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinob...    83   3e-15
UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni...    82   5e-15
UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T...    80   3e-14
UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi...    77   2e-13
UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon...    66   5e-10

Sequences not found previously or not previously below threshold:

UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter...    55   7e-07
UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influe...    52   5e-06
UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n...    50   3e-05
UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudo...    46   5e-04
UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_...    44   0.001
UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 ...    42   0.007
UniRef50_UPI000197C816 regulator of length of O-antigen componen...    41   0.015

>UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia
           RepID=A4TP85_YERPP
          Length = 383

 Score =  144 bits (363), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 77/144 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS A++  P   Q Q L++  T L VLD+ + +      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K    D LD    I  +  +  +  +    K +  + Y  + L
Sbjct: 118 DLREQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           S++A T  +A+ +L G I+Y++T+
Sbjct: 178 SYSASTPTDARDLLQGSINYVNTI 201


>UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia
           RepID=C4UHK4_YERRU
          Length = 384

 Score =  142 bits (359), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 77/143 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS +++ P    Q Q L+K    L VLD+++ I      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K++  D ++    I  +        +    K    + Y  + L
Sbjct: 118 DLREQYLINTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           S++A T+ +A+ +L GYI+++++
Sbjct: 178 SYSASTAVDARDLLQGYINFVNS 200


>UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular
           organisms RepID=FEPE_ECOLI
          Length = 377

 Score =  140 bits (352), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV
Sbjct: 55  LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL
Sbjct: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           SFTAPTSEEAQTVLSGYIDYISTL
Sbjct: 175 SFTAPTSEEAQTVLSGYIDYISTL 198


>UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae
           RepID=B4F1Q0_PROMH
          Length = 372

 Score =  133 bits (335), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             ++  LPQKWTS A +T P   + ++L  +   L ++D+D  ++ +  +  FI  + S 
Sbjct: 57  FTVASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSR 116

Query: 61  SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            L EEYL ++ Y  + L +      LD  + I  +  K   +  +   K  +        
Sbjct: 117 VLREEYLVNTDYYKNLLAKMDDPTPLDKRKLIETIVTKDINLKASD-SKNSDEEFSGEIN 175

Query: 120 LSFTAPTSEEAQTVLSGYIDYIST 143
           LSFTAPTSEEA  +LSGYI +IST
Sbjct: 176 LSFTAPTSEEAYDLLSGYIRFIST 199


>UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4SZ47_YERIN
          Length = 372

 Score =  131 bits (329), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 69/141 (48%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++ F LPQKWTS++V+  P   +   L+    +L+V  +D  ID       +++   S 
Sbjct: 55  LIVGFFLPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L + +L+ + Y+   +K+   DE      +  +S      + NA+ K         + L
Sbjct: 115 ILRDAFLQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYI 141
            F+A T + A+ +L GY++Y+
Sbjct: 175 KFSAQTPDSAKDLLQGYMNYV 195


>UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter
           RepID=C9XZM2_CROTZ
          Length = 377

 Score =  131 bits (328), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/142 (45%), Positives = 95/142 (66%), Gaps = 1/142 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L ++F+LPQKWTS AVV+ PE  Q  EL++    L+VLD+D  ID     N+F+KKF S 
Sbjct: 55  LALAFLLPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           +L E++LR+SP+V  Q+KEA+ D   L RA+  ++++   +  N + K    S Y+SWTL
Sbjct: 115 ALQEKFLRTSPWVQAQVKEAQSDTESLERAVTLVAQR-IKMTSNDNPKAPTASPYSSWTL 173

Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142
           SFTAP +++AQ VL  YI+Y +
Sbjct: 174 SFTAPKAQDAQRVLKEYINYAA 195


>UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella
           RepID=C5BCN1_EDWI9
          Length = 357

 Score =  126 bits (315), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             +  +LPQKWTS A + P +  +   +     +L +LD+ +          F++ ++S 
Sbjct: 43  FAVKTLLPQKWTSYAELIPAQARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQ 102

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            +  EY+  + Y       A  D L   R + +L++K   + ++   +  E   YT + L
Sbjct: 103 IVRREYIAQTDYYKTLAA-ALSDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRL 161

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
             +A +S+EA  +L GYID+++ 
Sbjct: 162 GVSARSSQEAHALLQGYIDFVAA 184


>UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia
           RepID=D1P4F6_9ENTR
          Length = 375

 Score =  120 bits (300), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           + +   LPQKWTS A++  P   + +E+ +   +L  LD +I +     +N FI +++S 
Sbjct: 57  IGVVKTLPQKWTSEAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSK 116

Query: 61  SLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
              E+Y+RS+ Y    L +   K D  +  R +  +      +  NA +K  +    +  
Sbjct: 117 VNQEDYVRSTEYYQSLLAKLGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDD---SDI 173

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            LSFTAPT+ EAQ +L+GYI Y ++
Sbjct: 174 ILSFTAPTAIEAQDLLNGYIRYTAS 198


>UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65UU8_MANSM
          Length = 396

 Score =  119 bits (298), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A    P+           ++   +    +   K      FN F    
Sbjct: 67  IYAFTAKEQWTSKATTIAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVAL 126

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S ++  E+   S +  +   E   DE    + +  + +K   V     KK         
Sbjct: 127 FSNNMKREFFAQSKWFQNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALG--- 183

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
             +SF A T +EAQ VL+ YI++I+ 
Sbjct: 184 INISFAAETPKEAQEVLTEYINFINA 209


>UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q4F4_PROST
          Length = 372

 Score =  118 bits (295), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           + + F LPQKW+S AVV PP   + +++     +L VLD+ I +   + FN FI +++S 
Sbjct: 57  IFVVFQLPQKWSSTAVVIPPSSEEIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSK 116

Query: 61  SLLEEYLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
              E Y+RS+ Y     +   +   E +  R +  +      + D + +K    S  +  
Sbjct: 117 VNQEAYVRSTNYFKKLSEQVNSTDKENEQQRLVNTIISNNIGLKDQSKEKN---STSSDI 173

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            L+F APT  EAQ +LSGY+ Y +T
Sbjct: 174 ILTFVAPTPSEAQDLLSGYVRYTAT 198


>UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST
          Length = 378

 Score =  116 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 8/145 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   ++WTS A V  P+           K + ++   + D        F  F    +
Sbjct: 43  IYAFTAKEQWTSKAEVIAPKVTDLGSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSE 102

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+    E+   S      +     DE      +  L+ +  A+     KK+ +       
Sbjct: 103 SLDERNEFFVQSDVYKKLI--EGKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGR--- 157

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            +SF A T E+AQ  L  +I + S 
Sbjct: 158 RISFLAETPEDAQLTLEKFIAFTSQ 182


>UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5
          Length = 308

 Score =  116 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 4/143 (2%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
           LI + LP+KWTS A++T  +  Q Q  E    KL++ D+ +  D+    +LFI+ F S  
Sbjct: 62  LICYKLPEKWTSKAIITYIDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNV 121

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           L E+YL ++ Y    +K+   +       I     K   ++ + S K+++   Y  +TLS
Sbjct: 122 LKEKYLVNTSYFQKLIKDHPENRNQFMLDI----IKNIHIEYSKSNKENDFKGYVFYTLS 177

Query: 122 FTAPTSEEAQTVLSGYIDYISTL 144
           ++A T+++AQ +L+GYI+YIS +
Sbjct: 178 YSADTAKDAQNLLNGYINYISAI 200


>UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae
           RepID=A7JUL8_PASHA
          Length = 375

 Score =  115 bits (287), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A V  P+  +  E      +    LRV  +D        FN F +  
Sbjct: 44  IYAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLA 103

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
           QS     E+  +S            DE      +  LS +  +     +KK         
Sbjct: 104 QSQDTKNEFFITSNVYKTLA--EGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGR-- 159

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
            TLSF+A T  EAQ  L   + +I++
Sbjct: 160 -TLSFSAETPMEAQDTLGKLVQFINS 184


>UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174
           Tax=Enterobacteriaceae RepID=WZZE_ECO57
          Length = 348

 Score =  114 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 17/150 (11%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTE-------AFNLF 53
           L  +F   Q+W+S A+   P              LR LD+   +   +       A+  F
Sbjct: 45  LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEF 104

Query: 54  IKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS 113
           + +  S     E+   + Y   ++      +     A++               +    S
Sbjct: 105 VMQLASWDTRREFWLQTDYYKQRMVGNSKAD----AALLDEMINNIQFIPGDFTRAVNDS 160

Query: 114 LYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                 +   A T+ +A  +L  Y+ + S 
Sbjct: 161 ------VKLIAETAPDANNLLRQYVAFASQ 184


>UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus
           succinogenes 130Z RepID=A6VMI6_ACTSZ
          Length = 346

 Score =  112 bits (280), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL----RVLDLDIKIDRTEAFNLFIKKF 57
           + +F   +KWTS A V  P  V       +  +     ++ D+ +       +  F +  
Sbjct: 45  IYAFTATEKWTSTAEVIAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLA 104

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S +    +   S      +++   DE    + + AL+ +  AV     KK  +      
Sbjct: 105 FSQNERRNFFSQSDEYKGLIQDQ--DEKAQRKILSALTTEYTAVVRPDPKKNADMFGN-- 160

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142
             +SF+A T E AQ  L+ ++D+I+
Sbjct: 161 -KISFSAQTPENAQKTLAQFVDFIN 184


>UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia
           rettgeri DSM 1131 RepID=UPI000197BC0B
          Length = 379

 Score =  112 bits (279), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 6   ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65
           +LPQKW+S A+V PP   + +E+     +L VLD+ I +     FN F+ +++S    E 
Sbjct: 69  LLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQES 128

Query: 66  YLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 123
           Y+RS+ Y  +  +  + K D +   R + ++      + D + +K    S      LSFT
Sbjct: 129 YIRSTDYYHNLAEKIDPKDDVIAQQRLVNSIISNDIKIQDLSKEKN---STSNDIVLSFT 185

Query: 124 APTSEEAQTVLSGYIDYIST 143
           AP   EAQ +L GYI Y ++
Sbjct: 186 APLPTEAQDLLEGYIRYSAS 205


>UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2C7A7_9GAMM
          Length = 351

 Score =  110 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR----VLDLDIKIDRTEAFNLFIKK 56
           ++ +    Q WTS A VT  +      +    T L     V  ++   +     N FI +
Sbjct: 43  IVYALTAQQWWTSDATVTRGQYKDTANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITE 102

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116
           F +    + +L  +  +    K+  +++ D  + I   ++K        +   DE     
Sbjct: 103 FNAFDNKKAFLEQNSIIEQYAKDDGVNKEDKGKFIAFWAKK------IDASLNDEKKRPN 156

Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIS 142
            + LSF A +SE A  +L  Y  +I+
Sbjct: 157 VYKLSFEARSSEAAHDLLKAYSSFIT 182


>UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae
           RepID=Q7N0P7_PHOLL
          Length = 367

 Score =  107 bits (268), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
            + + ++PQKW+S+A +  P+  + Q L+   TKL VL+L   +  +  +N F+  F S 
Sbjct: 55  FVAASLMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            L EEYL ++ Y  + + E+     L   + I  +     +    +S K ++        
Sbjct: 115 VLREEYLVNTEYFKNLVAESGDHSPLVKRKLIEKIVNDNIS----SSSKAEKDDENGETK 170

Query: 120 LSFTAPTSEEAQTVLSGYIDYISTL 144
           L+F+A T+E+A  +L+GYIDY+S++
Sbjct: 171 LTFSAGTAEDAYNLLNGYIDYVSSV 195


>UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans
           RepID=Q9JRS3_AGGAC
          Length = 369

 Score =  107 bits (267), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           +  F   ++WTS A +  P   +  +    +K + ++   + D  +     F  F    +
Sbjct: 40  IYVFTAKEQWTSKAEIIAPRITELGDYFLVKKEYARILGSEFDASMTANNLFGQFNLLSE 99

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+   +++   S +     +     E +  + +  L  K  A+    +KK  +       
Sbjct: 100 SLDERKKFFEKSDFYKK--ESEGKSEREKLQILFDLMTKNIAIKKPDTKKYPDLIGN--- 154

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF A T  EAQ VLS +I  ++
Sbjct: 155 QISFYAETPIEAQNVLSKFISTVN 178


>UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Vibrionales bacterium SWAT-3
           RepID=A5KZS4_9GAMM
          Length = 358

 Score =  107 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  + +  + W+S+A +T  +P      ++   + + +              +LD  +D 
Sbjct: 36  IAFALLAQEWWSSSAKITKAQPQNLAAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDS 95

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 106
              F  FI  F S +    +L +S     + K +            A + + +  +  ++
Sbjct: 96  KVLFQRFINAFNSTNNKRSFLDNSAEFQ-EFKSSMAVGSSDMSVDEARAFRAEWFNRISA 154

Query: 107 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 138
              D     + +T++F   T E +  +L+ YI
Sbjct: 155 FTADNKGPNSPYTINFQTMTKESSFELLAAYI 186


>UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH
          Length = 377

 Score =  104 bits (260), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 23/160 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  +  + + W++ A V+ P+       +++  + + L               LD  ID 
Sbjct: 54  ITYALTVQEWWSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDA 113

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104
              F  F+++F +      ++ ++   ++  K+   K D   L        E++K V   
Sbjct: 114 EVIFKRFLQEFNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGV--- 170

Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 144
                       ++TLSF +     +  +L  Y+ +++ +
Sbjct: 171 ----SIGEKEDGAFTLSFQSVDKISSLALLREYVQFVNQI 206


>UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis
           DSM 9187 RepID=C4L7N8_TOLAT
          Length = 372

 Score =  104 bits (260), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR---------TEAFNL 52
           + +F   + WTS AV   P+  +     +   +LR       I            E F  
Sbjct: 55  IYAFTAEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTE 114

Query: 53  FIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           F K+  S+ L  E+   S Y  + +   K  E D  + +  L EK   V     +K   P
Sbjct: 115 FQKQTNSIDLRREFWSQSDYYHNLVINIK-SEKDKEKKLDDLIEKNITVVPIDEQKVKFP 173

Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
           S      +S +   +  A+ +L  Y+D ++ 
Sbjct: 174 S------VSLSVNDATTAKELLIQYVDKLNA 198


>UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI
          Length = 379

 Score =  104 bits (259), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  S    + W+S A VT P        +K   + + L               LD  ID 
Sbjct: 53  ITYSLTAQEWWSSKATVTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDP 112

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104
              F  F+++F +      +++++   +   KE   + +   L        E++K V   
Sbjct: 113 EVIFKRFLQEFNANGTKRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGV--- 169

Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                        +TLSF +   + + T+LS Y+ +++ 
Sbjct: 170 ----PVGKKEENIFTLSFQSVDKDSSLTLLSQYVQFVNQ 204


>UniRef50_Q3YTC2 O antigen chain length determinant protein n=5
           Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS
          Length = 346

 Score =  104 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 9/144 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   ++WT+   +  P   +        +++ ++    LD        F+  I   +
Sbjct: 37  VYAFTAKEQWTAKTYIQAPRIAELGSYLKFHQAYARILNQPLDTNALANGLFSDLILIAE 96

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S     ++L S+ Y   +       E D    +   + K   +     K        + +
Sbjct: 97  SPDTKVKFLESTEYYKKE-TNNLSTEQDKKIWLAEQANKGLVITPPKEKGNT-----SYY 150

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +  +A +++EA  +L GY+  ++
Sbjct: 151 IIQASADSAQEAYKLLQGYLKNVN 174


>UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila
           RepID=Q8KNM2_AERHY
          Length = 362

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKK 56
           +  + + PQ W S + + PP   + + LE    +L    +   I    ++   +  F+  
Sbjct: 55  IGYALLAPQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSN 114

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116
           F S +   ++L    Y+    + A I +    RA++       +     +   +      
Sbjct: 115 FNSFNNKRQFLIEKGYLDMDAEAAGITDDKGKRALLRKMVNGISAVALDAPSDN------ 168

Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYI 141
             TLSF A T+ EAQ  L  YI +I
Sbjct: 169 -ITLSFGAATATEAQQRLEQYIAFI 192


>UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32
           RepID=B7VHQ6_VIBSL
          Length = 374

 Score =  101 bits (251), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 15/155 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  + +  + W+S A +T  E       E+   K + +              +LD  +D 
Sbjct: 52  IGFALLAQEWWSSEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDS 111

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 106
              F  F+  F S +  + +L  S     ++K+                   +  +  ++
Sbjct: 112 QIIFQRFVDLFNSSNNKKAFLDESSEFQ-EIKDDSFSSASEVTEDTTRKLYTEWFERISA 170

Query: 107 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
             +D+    + + L+F A T E +  +LS YI + 
Sbjct: 171 SLRDKKDTSSPYILTFQATTKESSFDLLSSYISFT 205


>UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella
           dagmatis ATCC 43325 RepID=C9PPK9_9PAST
          Length = 282

 Score = 98.7 bits (244), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 8/144 (5%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR--TEAFNLFIKKFQ 58
              SF++ ++W + A V  P            +  + +             +  F K+  
Sbjct: 34  YAASFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVSGKPTDTTPMDFVYREFKKQAG 93

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S  ++ ++ R++ +     K+   +  D                   +   +  S     
Sbjct: 94  SYDIVVDFWRNTDFYKQ--KQTGENVFDQQEL--ERLANSLGFTPQQAI--NGLSEKIGD 147

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +S T  + ++A  +LS ++DY++
Sbjct: 148 RISLTLGSPKQATELLSDFVDYVN 171


>UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450
           RepID=C9P0E2_9VIBR
          Length = 383

 Score = 97.9 bits (242), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           ++ +    + W+S A VT  +P      ++   + + +              +LD  +D 
Sbjct: 56  VVFALNSQEWWSSKAKVTKAQPQDIAAYQQQVKQFQPVFDIYQDDGTVLVSEELDNLVDT 115

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVM----DQLKEAKIDELDLHRAIVALSEKMKAVD 102
              F  F+  F S +   ++L SS            E + +      A V          
Sbjct: 116 EVLFKRFVDAFNSSNNKRDFLDSSSEFRAFKAKLETETETETETEAEAEVTRQLYAAWFQ 175

Query: 103 DNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
              + K+D     + + +S  + T E + ++L+ YI  I
Sbjct: 176 KI-TVKQDGIGKQSPYDISLQSTTKESSYSLLNEYIGII 213


>UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           angustum S14 RepID=Q1ZRK1_PHOAS
          Length = 347

 Score = 96.4 bits (238), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-----LDIKIDRTEAFNLFIKKF 57
            ++     WTS AV+T  +    +   ++   L V       +   +D       F+  F
Sbjct: 48  YAYYAQSWWTSTAVITTNKARDIRIFSENIDNLYVNSGVGGLVSQALDEKRLLRTFVNYF 107

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            + +   E+L  +  +       K     L R I  +           + +K        
Sbjct: 108 NAYNNKLEFLEGNKSIKSDFINEKEKHDFLQRFIKRI-----------NSEKVGNDSQVL 156

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142
           ++LS+TA +S ++  +LS YI++I+
Sbjct: 157 YSLSYTATSSIKSHDLLSEYINFIN 181


>UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae
           RepID=B0BR52_ACTPJ
          Length = 370

 Score = 94.8 bits (234), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   +KWTS   V  P      E     K +  +   +      R E   LF +   
Sbjct: 44  VYAFTAKEKWTSQTEVIAPRVTDISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVL 103

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S      + +++            +E+ L RA+   + +   V    +KK       +  
Sbjct: 104 SYDEAIAFFKTTDTYKKLA--ETENEVGLQRAVAEFTTESLKVIKPDAKKDPNALG-SKI 160

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF   T+  AQT L+ +I +IS
Sbjct: 161 AISF--DTALSAQTTLNDFICHIS 182


>UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas
           RepID=A1SRR6_PSYIN
          Length = 347

 Score = 94.8 bits (234), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 24/163 (14%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----------------------D 39
            +    + W +   V  P+      L     K+  +                       +
Sbjct: 13  YALNAQEWWVAKGKVIAPQVNDVAALYAQSNKVSAILNSNDLLNSNSNNNGQDTKQVSKE 72

Query: 40  LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMK 99
           L    + +  F  FI  F S    + +L ++P  +  L+  +I       A  +  + + 
Sbjct: 73  LVDLFEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKGSAQESRQQYLI 132

Query: 100 AVDDNASK-KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
            +++  +K      S  +   LSF + T E +  +L+ YI +I
Sbjct: 133 VLNNWMNKINASLNSQTSELALSFRSATKESSAELLNEYILFI 175


>UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65U41_MANSM
          Length = 260

 Score = 93.7 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDL-DIKIDRT-EAFNLFIKKFQSVS 61
           S++    WT  + +  P   +       ++  ++L+      D T + FN F +   S  
Sbjct: 34  SYLAKNLWTVQSSLEKPALTELGNYYSLYSTYQLLNNEKANQDPTGDIFNRFKQLAGSYE 93

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
             + +  ++ Y   +L     D     + +  LS ++K +D NA+  +          LS
Sbjct: 94  HAKVFWENTDYYKQKL---TDDSQHDSQLLDQLSREIKLLDTNAATTQ----------LS 140

Query: 122 FTAPTSEEAQTVLSGYIDYI 141
                 + A+ +L+ YIDY 
Sbjct: 141 LELDNPKRARELLTEYIDYT 160


>UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium
           profundum 3TCK RepID=Q1Z8B9_PHOPR
          Length = 349

 Score = 91.0 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----DLDIKIDRTEAFNLFIKK 56
           + +F   + W+S+ ++T         L    + L ++      L+      + F  FI +
Sbjct: 43  IYAFNSQEWWSSSEIITEANYNDLSSLRNDVSPLFIVAAKTEKLEKIFSPNKIFIDFINE 102

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 115
           +       E++ S+  +  ++   K  +E   +  +   S K+K      + K       
Sbjct: 103 YNKPLTKSEFILSNDLLKIKMSNQKLEEEQQKNAFVKFWSNKIKYKKQGDNFK------- 155

Query: 116 TSWTLSFTAPTSEEAQTVLSGYIDYI 141
               L F + ++EE+Q +LS Y  ++
Sbjct: 156 ----LIFESNSAEESQLLLSQYSKFV 177


>UniRef50_A7JRK0 Lipopolysaccharide chain length determinant protein n=2
           Tax=Mannheimia haemolytica RepID=A7JRK0_PASHA
          Length = 270

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDI---------KIDRTEAFNLF 53
           +S+  P+KW   A    P            +    L+ +          +    + +  F
Sbjct: 25  LSYTQPEKWKVTAQFEQPTIPDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEF 84

Query: 54  IKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS 113
            +   S  LL+ YL  +  V  + + AK         + A   +    + + +   D   
Sbjct: 85  KRNLTSADLLQAYLLQTEAVKLKAQVAKKSP----AVVAAELVEQFRFEKDMATSADN-- 138

Query: 114 LYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                 +S  A  +EEAQ +L+ +I  ++T
Sbjct: 139 ------VSLIAENAEEAQKLLADFIPLVNT 162


>UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinobacillus minor
           RepID=C5S436_9PAST
          Length = 256

 Score = 84.8 bits (208), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 22/152 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID---------RTEAFN 51
              +   P +W ++A    P+  +       F+   ++  D                ++ 
Sbjct: 20  FAGAKFQPTQWQASAQFEHPQTAELGNYLTLFSTYHLISGDTAAADISKMEAKAAEASYT 79

Query: 52  LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 111
            F K  QS   L ++L +S  V  Q K   I E  + + +    +     +         
Sbjct: 80  EFKKNIQSQEKLAQFLTNSALVKAQAKIEGISEQAMVQQLSKHFQFTSGNNQPD------ 133

Query: 112 PSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                  TLS T+ +++EA  +   Y+ Y++T
Sbjct: 134 -------TLSLTSFSTQEADNLFGEYLRYVNT 158


>UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteurella multocida
           RepID=Q9CNG7_PASMU
          Length = 277

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI--DRTEAFNLFIKKFQSVS 61
           S++  + W + A V+ P+           +  + +        +    +  F+K+  S  
Sbjct: 36  SYLKSKTWLAEAHVSAPDIALLGNYYALSSTYQFIKNKENQRQETEIVYQEFLKQLMSEE 95

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           ++  +  ++ Y     K+   D +DL  A++    K        +    +       ++S
Sbjct: 96  MIRRFWENTEYYKQ--KQTGEDHIDL--ALLEKLTKAIKFKSAQTLDVAD-------SVS 144

Query: 122 FTAPTSEEAQTVLSGYIDYIS 142
                 + A  +LS +ID ++
Sbjct: 145 LALENPKLATELLSSFIDQVN 165


>UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinobacillus
           pleuropneumoniae RepID=A3N2K1_ACTP2
          Length = 292

 Score = 82.9 bits (203), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 36/168 (21%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEA----------- 49
             +S +  Q W + A   PP+          F+    L+    +                
Sbjct: 21  FGLSSLDTQTWKATAEFEPPKVSTLGNYYTLFSTYTFLNGGDGVSYNVIADDKGSLSLAP 80

Query: 50  --------------FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALS 95
                         +N F +   S  +L E+L  +  V  + +      L     ++   
Sbjct: 81  EIGRKAEDSATLGSYNEFKRNLISTDVLVEFLTQTETVKLKAQ------LTHQPIVMTAQ 134

Query: 96  EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
              +     A+ K          +LS  +   EEA  +L+ +I + + 
Sbjct: 135 SLAEQFVFQAATK-----TQPFDSLSVRSANPEEAYKLLNDFIAFANQ 177


>UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter
           caesariensis RepID=Q2BJF5_9GAMM
          Length = 353

 Score = 82.1 bits (201), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 15/144 (10%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRT----EAFNLFIKKF 57
             SF+    + S+AV+  P      E+ K  T L+ +             + F  FI   
Sbjct: 44  AYSFLSTPIYQSSAVLASPSESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISAL 103

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S      +L                            +  K  +        +      
Sbjct: 104 NSNRYKNSFL-----------SKPELLDHFRNDNTTQLQARKEFNRALKVTLPDTEEINH 152

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYI 141
            T+S    + E + + L+ YI + 
Sbjct: 153 ITISLRTKSPELSSSWLNEYISFA 176


>UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA
          Length = 352

 Score = 79.8 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRV-----LDLDIKIDRTEAFNLFIK 55
           L++S    Q W S+A +T P+   +     S  +L         L   I+  + +N FI 
Sbjct: 42  LIVSIYSAQWWESSAEITKPQYSDYAVFISSADQLTTGSNPSESLKSIINIEKNYNSFIN 101

Query: 56  KFQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114
              S +   ++L+ S  +           ++   +A+   +EK+        KK+     
Sbjct: 102 ILTSKTNKIDFLQQSNIIKSYFIRDGVKTDIQKDKALDLWAEKIIV------KKESLILN 155

Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYI 141
            +S+ +   A T +++  +L+ YI + 
Sbjct: 156 KSSYIVIAQANTLDDSFKLLNNYIKFT 182


>UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia
           RepID=A1JMR4_YERE8
          Length = 363

 Score = 77.1 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 23/140 (16%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           + F  P++WTS A+V+     + Q LE   + L VL++D+ I   +    F K + S  +
Sbjct: 58  VVFFSPKEWTSYAIVSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKDM 117

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
           L +Y+                  +   A      K K ++ ++  K +       + L++
Sbjct: 118 LSKYM----------------SKEKVNANNFAGLKGKNINSDSDVKGN-------YILTY 154

Query: 123 TAPTSEEAQTVLSGYIDYIS 142
           ++      + V +GY++YI+
Sbjct: 155 SSNLEYGLKDVFTGYVNYIN 174


>UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica
           RepID=WZZB_SALTY
          Length = 327

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 31/139 (22%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
              I  +KWTS A++T P+  Q      +   L   +       +E    FI +F S   
Sbjct: 48  YLMIAKEKWTSTAIITQPDAAQVATYTNALNVLYGGNAPKI---SEVQANFISRFSS--- 101

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
              +          L E   ++ +  +  +  S K +A+                 ++S+
Sbjct: 102 --AF--------SALSEVLDNQKEREKLTIEQSVKGQAL---------------PLSVSY 136

Query: 123 TAPTSEEAQTVLSGYIDYI 141
            + T+E AQ  L+ YI  +
Sbjct: 137 VSTTAEGAQRRLAEYIQQV 155


>UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae
           RepID=WZZB3_ECOLX
          Length = 325

 Score = 54.8 bits (130), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 33/142 (23%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID-RTEAFNLFIKKFQS 59
           +    +  +KWTS A++T P+  Q      +   +         D +      F   F +
Sbjct: 46  IGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSA 105

Query: 60  VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
                            L E   ++ +  +  +  S K + +                 T
Sbjct: 106 -----------------LAETLDNQEEPEKLTIEPSVKNQQL---------------PLT 133

Query: 120 LSFTAPTSEEAQTVLSGYIDYI 141
           +S+   T+E AQ  L+ YI  +
Sbjct: 134 VSYVGQTAEGAQMKLAQYIQQV 155


>UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influenzae
           RepID=A4NGY6_HAEIN
          Length = 136

 Score = 52.1 bits (123), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 9/109 (8%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI---------DRTEAFN 51
              + + P KW   A    P+  +       F+   ++  D                A +
Sbjct: 15  FAGAHVHPTKWQVRAQFEAPKINELGNYFSLFSTYSLVSGDADTVDMVKIERKATDSANH 74

Query: 52  LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKA 100
            F K   S + L  +L  S +V  + K        +        E    
Sbjct: 75  EFTKILTSSAQLMAFLNQSDFVKARAKVENETIQQIASHFKFSQENNLN 123


>UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas
           entomophila L48 RepID=Q1ID96_PSEE4
          Length = 346

 Score = 49.8 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L+  F +P ++ +     PP      +L   + +    +L   I   + ++ +++   S 
Sbjct: 42  LVYVFYVPSRYEAKLFTIPPTQNDIAQLN--YGRGGSAEL-PLISVGDVYSSYVRNLNSE 98

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           S+  E+  +  Y     ++ K     L   +        ++                + +
Sbjct: 99  SMRMEFF-NDVYFPSLAEKQKT---SLRSDLYRQFFAALSILQG------GKDQSDRYLI 148

Query: 121 SFTAPTSEEAQTVLSGY 137
           + ++ + EEA   +  Y
Sbjct: 149 TASSSSPEEAAKWVKQY 165


>UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudomonas aeruginosa
           RepID=Q02PW5_PSEAB
          Length = 360

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 15/140 (10%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
            +F+    + +   + PP          +  +   L        ++ +++F +  QS   
Sbjct: 46  YAFLSKPVYEARVALLPPSLSDVAGFNIARGRDSGL---PPFTVSQVYSVFTRNLQSEGT 102

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
             ++ R     +  L+E K     L+RA            D+ S  +    L   +T+  
Sbjct: 103 RRQFFR--EVYLPSLEERKGSIDGLYRA----------FSDDVSVNRPSKDLPERYTVIL 150

Query: 123 TAPTSEEAQTVLSGYIDYIS 142
                E+A      Y D  +
Sbjct: 151 NRQDPEQAAKWAKQYADLAA 170


>UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_PSEAE
          Length = 344

 Score = 44.4 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 47/145 (32%), Gaps = 18/145 (12%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI-DRTEAFNLFIKKFQS 59
           ++ +F     + + A V PP   +          L   + D+ +    + +++FI+   +
Sbjct: 44  VVYAFYSRPIYEARASVLPPSLNEISGF-----NLGRKESDLGVFSVKDIYDVFIRNLMA 98

Query: 60  VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
               + + +        L        +   A+         +                + 
Sbjct: 99  EETRQNFFKE-----KYLPTLGDKGAESLDALYNKFNDELQIK-------ASVDGSGRYL 146

Query: 120 LSFTAPTSEEAQTVLSGYIDYISTL 144
           +S  A  S+ A  ++  YI+ ++ +
Sbjct: 147 ISAVAHESDTAAYLVDSYIEMVAGI 171


>UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 Tax=Thiomicrospira
           crunogena XCL-2 RepID=Q31F07_THICR
          Length = 364

 Score = 41.7 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 9/142 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
           + +F +   + S A + PP+  + Q++ +    L + D        + FN + +   S +
Sbjct: 49  IYAFSVTPVYKSDAYLLPPKASEIQDINRLNATLGIGD---AYSVNDVFNTYTENLLSRA 105

Query: 62  LLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            L  + +    +     +   K  E+       + S  ++        K     +    T
Sbjct: 106 RLLTFFKQHNLIAFYEPDFKNKEKEVREKEFNDSFSTFVEEF-GITHPKDGAKRVMVEMT 164

Query: 120 LSFTAPTSEEAQTVLSGYIDYI 141
           L      +++ +  L+ YI  I
Sbjct: 165 LPV---DADQVKEFLTQYIQKI 183


>UniRef50_UPI000197C816 regulator of length of O-antigen component of lipopolysaccharide
           chains n=2 Tax=Providencia rettgeri DSM 1131
           RepID=UPI000197C816
          Length = 332

 Score = 40.5 bits (93), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 33/141 (23%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
           +       KWTS A+++ PE  Q      + +                         S  
Sbjct: 42  VYLVFAKPKWTSQALISLPEIGQLSNYPTAVSL---------------------SLNSAD 80

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
            +  Y            +  +     +  +  +   +     N      +P     + LS
Sbjct: 81  NMGTY------------DMSLPTKVFNLFLANVDADIVKDKSNTPLSISKPKDANYYILS 128

Query: 122 FTAPTSEEAQTVLSGYIDYIS 142
            +A  ++ AQ  L+ ++++++
Sbjct: 129 LSASNAKLAQLELTEWLNFLN 149


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers...   139   3e-32
UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10...   137   9e-32
UniRef50_P26266 Ferric enterobactin transport protein fepE n=158...   136   2e-31
UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter...   130   1e-29
UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini...   126   2e-28
UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T...   125   5e-28
UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T...   121   9e-27
UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei...   119   2e-26
UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr...   118   6e-26
UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide...   117   1e-25
UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C...   115   4e-25
UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1...   115   4e-25
UniRef50_C4K3Z7 Regulator of length of O-antigen component of li...   113   1e-24
UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T...   112   4e-24
UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=...   111   8e-24
UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep...   109   2e-23
UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba...   107   1e-22
UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete...   107   2e-22
UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En...   105   5e-22
UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom...   104   7e-22
UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0...   104   7e-22
UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re...   104   1e-21
UniRef50_A5KZS4 Regulator of length of O-antigen component of li...   103   2e-21
UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T...   102   2e-21
UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=...   102   3e-21
UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ...   100   1e-20
UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1...    97   2e-19
UniRef50_C9P0E2 Regulator of length of O-antigen component of li...    96   4e-19
UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T...    94   8e-19
UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn...    94   1e-18
UniRef50_A1SRR6 Chain length determinant protein-like protein n=...    93   2e-18
UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannhei...    91   7e-18
UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph...    91   8e-18
UniRef50_A7JRK0 Lipopolysaccharide chain length determinant prot...    89   6e-17
UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinob...    88   1e-16
UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteur...    86   3e-16
UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinob...    85   6e-16
UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudo...    84   9e-16
UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n...    82   4e-15
UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni...    82   6e-15
UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_...    81   1e-14
UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T...    81   2e-14
UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi...    73   2e-12
UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter...    72   5e-12
UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influe...    72   6e-12
UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon...    70   2e-11

Sequences not found previously or not previously below threshold:

UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_...    51   2e-05
UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 ...    49   4e-05
UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP...    44   0.002
UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Ta...    43   0.003
UniRef50_P43943 Uncharacterized protein HI0109 n=7 Tax=Haemophil...    42   0.006
UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n...    41   0.012
UniRef50_UPI000197C816 regulator of length of O-antigen componen...    41   0.013
UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinoba...    41   0.018
UniRef50_B2A9W3 Predicted CDS Pa_1_2000 n=4 Tax=Sordariales RepI...    39   0.032
UniRef50_A3UQV9 Putative uncharacterized protein n=1 Tax=Vibrio ...    39   0.054
UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanel...    38   0.077

>UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia
           RepID=A4TP85_YERPP
          Length = 383

 Score =  139 bits (349), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 77/144 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS A++  P   Q Q L++  T L VLD+ + +      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K    D LD    I  +  +  +  +    K +  + Y  + L
Sbjct: 118 DLREQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           S++A T  +A+ +L G I+Y++T+
Sbjct: 178 SYSASTPTDARDLLQGSINYVNTI 201


>UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia
           RepID=C4UHK4_YERRU
          Length = 384

 Score =  137 bits (345), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 77/143 (53%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++S+ILPQKWTS +++ P    Q Q L+K    L VLD+++ I      + F + F S 
Sbjct: 58  LVVSYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQ 117

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L E+YL ++ Y    +K++  D ++    I  +        +    K    + Y  + L
Sbjct: 118 DLREQYLINTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKL 177

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           S++A T+ +A+ +L GYI+++++
Sbjct: 178 SYSASTAVDARDLLQGYINFVNS 200


>UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular
           organisms RepID=FEPE_ECOLI
          Length = 377

 Score =  136 bits (343), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV
Sbjct: 55  LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL
Sbjct: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYISTL 144
           SFTAPTSEEAQTVLSGYIDYISTL
Sbjct: 175 SFTAPTSEEAQTVLSGYIDYISTL 198


>UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae
           RepID=B4F1Q0_PROMH
          Length = 372

 Score =  130 bits (327), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             ++  LPQKWTS A +T P   + ++L  +   L ++D+D  ++ +  +  FI  + S 
Sbjct: 57  FTVASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSR 116

Query: 61  SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            L EEYL ++ Y  + L +      LD  + I  +  K   +  + S K  +        
Sbjct: 117 VLREEYLVNTDYYKNLLAKMDDPTPLDKRKLIETIVTKDINLKASDS-KNSDEEFSGEIN 175

Query: 120 LSFTAPTSEEAQTVLSGYIDYIST 143
           LSFTAPTSEEA  +LSGYI +IST
Sbjct: 176 LSFTAPTSEEAYDLLSGYIRFIST 199


>UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4SZ47_YERIN
          Length = 372

 Score =  126 bits (317), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 69/141 (48%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L++ F LPQKWTS++V+  P   +   L+    +L+V  +D  ID       +++   S 
Sbjct: 55  LIVGFFLPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            L + +L+ + Y+   +K+   DE      +  +S      + NA+ K         + L
Sbjct: 115 ILRDAFLQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRL 174

Query: 121 SFTAPTSEEAQTVLSGYIDYI 141
            F+A T + A+ +L GY++Y+
Sbjct: 175 KFSAQTPDSAKDLLQGYMNYV 195


>UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter
           RepID=C9XZM2_CROTZ
          Length = 377

 Score =  125 bits (313), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/142 (45%), Positives = 95/142 (66%), Gaps = 1/142 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L ++F+LPQKWTS AVV+ PE  Q  EL++    L+VLD+D  ID     N+F+KKF S 
Sbjct: 55  LALAFLLPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           +L E++LR+SP+V  Q+KEA+ D   L RA+  ++++   +  N + K    S Y+SWTL
Sbjct: 115 ALQEKFLRTSPWVQAQVKEAQSDTESLERAVTLVAQR-IKMTSNDNPKAPTASPYSSWTL 173

Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142
           SFTAP +++AQ VL  YI+Y +
Sbjct: 174 SFTAPKAQDAQRVLKEYINYAA 195


>UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella
           RepID=C5BCN1_EDWI9
          Length = 357

 Score =  121 bits (302), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             +  +LPQKWTS A + P +  +   +     +L +LD+ +          F++ ++S 
Sbjct: 43  FAVKTLLPQKWTSYAELIPAQARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQ 102

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
            +  EY+  + Y       A  D L   R + +L++K   + ++   +  E   YT + L
Sbjct: 103 IVRREYIAQTDYYKTLAA-ALSDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRL 161

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
             +A +S+EA  +L GYID+++ 
Sbjct: 162 GVSARSSQEAHALLQGYIDFVAA 184


>UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65UU8_MANSM
          Length = 396

 Score =  119 bits (299), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A    P+           ++   +    +   K      FN F    
Sbjct: 67  IYAFTAKEQWTSKATTIAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVAL 126

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S ++  E+   S +  +   E   DE    + +  + +K   V     KK         
Sbjct: 127 FSNNMKREFFAQSKWFQNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALG--- 183

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
             +SF A T +EAQ VL+ YI++I+ 
Sbjct: 184 INISFAAETPKEAQEVLTEYINFINA 209


>UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia
           RepID=D1P4F6_9ENTR
          Length = 375

 Score =  118 bits (295), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           + +   LPQKWTS A++  P   + +E+ +   +L  LD +I +     +N FI +++S 
Sbjct: 57  IGVVKTLPQKWTSEAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSK 116

Query: 61  SLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
              E+Y+RS+ Y    L +   K D  +  R +  +      +  NA +K  +    +  
Sbjct: 117 VNQEDYVRSTEYYQSLLAKLGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDD---SDI 173

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            LSFTAPT+ EAQ +L+GYI Y ++
Sbjct: 174 ILSFTAPTAIEAQDLLNGYIRYTAS 198


>UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q4F4_PROST
          Length = 372

 Score =  117 bits (293), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           + + F LPQKW+S AVV PP   + +++     +L VLD+ I +   + FN FI +++S 
Sbjct: 57  IFVVFQLPQKWSSTAVVIPPSSEEIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSK 116

Query: 61  SLLEEYLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
              E Y+RS+ Y     +   +   E +  R +  +      + D + +K    S  +  
Sbjct: 117 VNQEAYVRSTNYFKKLSEQVNSTDKENEQQRLVNTIISNNIGLKDQSKEKN---STSSDI 173

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            L+F APT  EAQ +LSGY+ Y +T
Sbjct: 174 ILTFVAPTPSEAQDLLSGYVRYTAT 198


>UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST
          Length = 378

 Score =  115 bits (288), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 8/145 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   ++WTS A V  P+           K + ++   + D        F  F    +
Sbjct: 43  IYAFTAKEQWTSKAEVIAPKVTDLGSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSE 102

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+    E+   S      ++    DE      +  L+ +  A+     KK+ +       
Sbjct: 103 SLDERNEFFVQSDVYKKLIE--GKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGR--- 157

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIST 143
            +SF A T E+AQ  L  +I + S 
Sbjct: 158 RISFLAETPEDAQLTLEKFIAFTSQ 182


>UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174
           Tax=Enterobacteriaceae RepID=WZZE_ECO57
          Length = 348

 Score =  115 bits (288), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 17/150 (11%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR-------TEAFNLF 53
           L  +F   Q+W+S A+   P              LR LD+   +          EA+  F
Sbjct: 45  LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEF 104

Query: 54  IKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS 113
           + +  S     E+   + Y   ++      +     A++               +    S
Sbjct: 105 VMQLASWDTRREFWLQTDYYKQRMVGNSKAD----AALLDEMINNIQFIPGDFTRAVNDS 160

Query: 114 LYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                 +   A T+ +A  +L  Y+ + S 
Sbjct: 161 ------VKLIAETAPDANNLLRQYVAFASQ 184


>UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5
          Length = 308

 Score =  113 bits (283), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
           I + LP+KWTS A++T  +  Q Q  E    KL++ D+ +  D+    +LFI+ F S  L
Sbjct: 63  ICYKLPEKWTSKAIITYIDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNVL 122

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
            E+YL ++ Y    +K+   +       I     K   ++ + S K+++   Y  +TLS+
Sbjct: 123 KEKYLVNTSYFQKLIKDHPENRNQFMLDI----IKNIHIEYSKSNKENDFKGYVFYTLSY 178

Query: 123 TAPTSEEAQTVLSGYIDYISTL 144
           +A T+++AQ +L+GYI+YIS +
Sbjct: 179 SADTAKDAQNLLNGYINYISAI 200


>UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae
           RepID=A7JUL8_PASHA
          Length = 375

 Score =  112 bits (280), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 9/146 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKF 57
           + +F   ++WTS A V  P+  +  E      +   +     +D        FN F +  
Sbjct: 44  IYAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLA 103

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
           QS     E+  +S       +    DE      +  LS +  +     +KK         
Sbjct: 104 QSQDTKNEFFITSNVYKTLAE--GKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGR-- 159

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
            TLSF+A T  EAQ  L   + +I++
Sbjct: 160 -TLSFSAETPMEAQDTLGKLVQFINS 184


>UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus
           succinogenes 130Z RepID=A6VMI6_ACTSZ
          Length = 346

 Score =  111 bits (277), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 9/145 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKF 57
           + +F   +KWTS A V  P  V       +  +   +    D+ +       +  F +  
Sbjct: 45  IYAFTATEKWTSTAEVIAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLA 104

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S +    +   S      +++   DE    + + AL+ +  AV     KK  +      
Sbjct: 105 FSQNERRNFFSQSDEYKGLIQDQ--DEKAQRKILSALTTEYTAVVRPDPKKNADMFGN-- 160

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIS 142
             +SF+A T E AQ  L+ ++D+I+
Sbjct: 161 -KISFSAQTPENAQKTLAQFVDFIN 184


>UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia
           rettgeri DSM 1131 RepID=UPI000197BC0B
          Length = 379

 Score =  109 bits (273), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 6   ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 65
           +LPQKW+S A+V PP   + +E+     +L VLD+ I +     FN F+ +++S    E 
Sbjct: 69  LLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQES 128

Query: 66  YLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 123
           Y+RS+ Y  +  +  + K D +   R + ++      + D + +K    S      LSFT
Sbjct: 129 YIRSTDYYHNLAEKIDPKDDVIAQQRLVNSIISNDIKIQDLSKEKN---STSNDIVLSFT 185

Query: 124 APTSEEAQTVLSGYIDYIST 143
           AP   EAQ +L GYI Y ++
Sbjct: 186 APLPTEAQDLLEGYIRYSAS 205


>UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2C7A7_9GAMM
          Length = 351

 Score =  107 bits (267), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR----VLDLDIKIDRTEAFNLFIKK 56
           ++ +    Q WTS A VT  +      +    T L     V  ++   +     N FI +
Sbjct: 43  IVYALTAQQWWTSDATVTRGQYKDTANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITE 102

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116
           F +    + +L  +  +    K+  +++ D  + I   ++K        +   DE     
Sbjct: 103 FNAFDNKKAFLEQNSIIEQYAKDDGVNKEDKGKFIAFWAKK------IDASLNDEKKRPN 156

Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIS 142
            + LSF A +SE A  +L  Y  +I+
Sbjct: 157 VYKLSFEARSSEAAHDLLKAYSSFIT 182


>UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans
           RepID=Q9JRS3_AGGAC
          Length = 369

 Score =  107 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           +  F   ++WTS A +  P   +  +    +K + ++   + D  +     F  F    +
Sbjct: 40  IYVFTAKEQWTSKAEIIAPRITELGDYFLVKKEYARILGSEFDASMTANNLFGQFNLLSE 99

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S+   +++   S +     +     E +  + +  L  K  A+    +KK  +       
Sbjct: 100 SLDERKKFFEKSDFYKK--ESEGKSEREKLQILFDLMTKNIAIKKPDTKKYPDLIGN--- 154

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF A T  EAQ VLS +I  ++
Sbjct: 155 QISFYAETPIEAQNVLSKFISTVN 178


>UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae
           RepID=Q7N0P7_PHOLL
          Length = 367

 Score =  105 bits (261), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 5/145 (3%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
            + + ++PQKW+S+A +  P+  + Q L+   TKL VL+L   +  +  +N F+  F S 
Sbjct: 55  FVAASLMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSR 114

Query: 61  SLLEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
            L EEYL ++ Y  + + E+     L   + I  +     +    +S K ++        
Sbjct: 115 VLREEYLVNTEYFKNLVAESGDHSPLVKRKLIEKIVNDNIS----SSSKAEKDDENGETK 170

Query: 120 LSFTAPTSEEAQTVLSGYIDYISTL 144
           L+F+A T+E+A  +L+GYIDY+S++
Sbjct: 171 LTFSAGTAEDAYNLLNGYIDYVSSV 195


>UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila
           RepID=Q8KNM2_AERHY
          Length = 362

 Score =  104 bits (260), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 11/147 (7%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKK 56
           +  + + PQ W S + + PP   + + LE    +L    +   I    ++   +  F+  
Sbjct: 55  IGYALLAPQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSN 114

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116
           F S +   ++L    Y+    + A I +    RA++       +     +   +      
Sbjct: 115 FNSFNNKRQFLIEKGYLDMDAEAAGITDDKGKRALLRKMVNGISAVALDAPSDN------ 168

Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIST 143
             TLSF A T+ EAQ  L  YI +I  
Sbjct: 169 -ITLSFGAATATEAQQRLEQYIAFIQQ 194


>UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI
          Length = 379

 Score =  104 bits (260), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  S    + W+S A VT P        +K   + + L               LD  ID 
Sbjct: 53  ITYSLTAQEWWSSKATVTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDP 112

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104
              F  F+++F +      +++++   +   KE   + +   L        E++K V   
Sbjct: 113 EVIFKRFLQEFNANGTKRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGV--- 169

Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                        +TLSF +   + + T+LS Y+ +++ 
Sbjct: 170 ----PVGKKEENIFTLSFQSVDKDSSLTLLSQYVQFVNQ 204


>UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH
          Length = 377

 Score =  104 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 23/160 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  +  + + W++ A V+ P+       +++  + + L               LD  ID 
Sbjct: 54  ITYALTVQEWWSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDA 113

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDN 104
              F  F+++F +      ++ ++   ++  K+   K D   L        E++K V   
Sbjct: 114 EVIFKRFLQEFNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGV--- 170

Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 144
                       ++TLSF +     +  +L  Y+ +++ +
Sbjct: 171 ----SIGEKEDGAFTLSFQSVDKISSLALLREYVQFVNQI 206


>UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Vibrionales bacterium SWAT-3
           RepID=A5KZS4_9GAMM
          Length = 358

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  + +  + W+S+A +T  +P      ++   + + +              +LD  +D 
Sbjct: 36  IAFALLAQEWWSSSAKITKAQPQNLAAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDS 95

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 106
              F  FI  F S +    +L +S     + K +            A + + +  +  ++
Sbjct: 96  KVLFQRFINAFNSTNNKRSFLDNSAEFQ-EFKSSMAVGSSDMSVDEARAFRAEWFNRISA 154

Query: 107 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 138
              D     + +T++F   T E +  +L+ YI
Sbjct: 155 FTADNKGPNSPYTINFQTMTKESSFELLAAYI 186


>UniRef50_Q3YTC2 O antigen chain length determinant protein n=5
           Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS
          Length = 346

 Score =  102 bits (255), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 9/144 (6%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   ++WT+   +  P   +        +++ ++    LD        F+  I   +
Sbjct: 37  VYAFTAKEQWTAKTYIQAPRIAELGSYLKFHQAYARILNQPLDTNALANGLFSDLILIAE 96

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S     ++L S+ Y   +       E D    +   + K   +     K        + +
Sbjct: 97  SPDTKVKFLESTEYYKKE-TNNLSTEQDKKIWLAEQANKGLVITPPKEKGNT-----SYY 150

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +  +A +++EA  +L GY+  ++
Sbjct: 151 IIQASADSAQEAYKLLQGYLKNVN 174


>UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis
           DSM 9187 RepID=C4L7N8_TOLAT
          Length = 372

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR---------TEAFNL 52
           + +F   + WTS AV   P+  +     +   +LR       I            E F  
Sbjct: 55  IYAFTAEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTE 114

Query: 53  FIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 112
           F K+  S+ L  E+   S Y  + +   K  E D  + +  L EK   V     +K   P
Sbjct: 115 FQKQTNSIDLRREFWSQSDYYHNLVINIK-SEKDKEKKLDDLIEKNITVVPIDEQKVKFP 173

Query: 113 SLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
           S      +S +   +  A+ +L  Y+D ++ 
Sbjct: 174 S------VSLSVNDATTAKELLIQYVDKLNA 198


>UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32
           RepID=B7VHQ6_VIBSL
          Length = 374

 Score =  100 bits (249), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 15/155 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           +  + +  + W+S A +T  E       E+   K + +              +LD  +D 
Sbjct: 52  IGFALLAQEWWSSEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDS 111

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 106
              F  F+  F S +  + +L  S     ++K+                   +  +  ++
Sbjct: 112 QIIFQRFVDLFNSSNNKKAFLDESSEFQ-EIKDDSFSSASEVTEDTTRKLYTEWFERISA 170

Query: 107 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
             +D+    + + L+F A T E +  +LS YI + 
Sbjct: 171 SLRDKKDTSSPYILTFQATTKESSFDLLSSYISFT 205


>UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella
           dagmatis ATCC 43325 RepID=C9PPK9_9PAST
          Length = 282

 Score = 96.8 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 8/144 (5%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR--TEAFNLFIKKFQ 58
              SF++ ++W + A V  P            +  + +             +  F K+  
Sbjct: 34  YAASFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVSGKPTDTTPMDFVYREFKKQAG 93

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S  ++ ++ R++ +     K+   +  D                   +   +  S     
Sbjct: 94  SYDIVVDFWRNTDFYKQ--KQTGENVFDQQEL--ERLANSLGFTPQQAI--NGLSEKIGD 147

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +S T  + ++A  +LS ++DY++
Sbjct: 148 RISLTLGSPKQATELLSDFVDYVN 171


>UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide
           chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450
           RepID=C9P0E2_9VIBR
          Length = 383

 Score = 95.6 bits (236), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDR 46
           ++ +    + W+S A VT  +P      ++   + + +              +LD  +D 
Sbjct: 56  VVFALNSQEWWSSKAKVTKAQPQDIAAYQQQVKQFQPVFDIYQDDGTVLVSEELDNLVDT 115

Query: 47  TEAFNLFIKKFQSVSLLEEYLRSSPYVM----DQLKEAKIDELDLHRAIVALSEKMKAVD 102
              F  F+  F S +   ++L SS            E + +      A V          
Sbjct: 116 EVLFKRFVDAFNSSNNKRDFLDSSSEFRAFKAKLETETETETETEAEAEVTRQLYAAWFQ 175

Query: 103 DNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
              + K+D     + + +S  + T E + ++L+ YI  I
Sbjct: 176 KI-TVKQDGIGKQSPYDISLQSTTKESSYSLLNEYIGII 213


>UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           angustum S14 RepID=Q1ZRK1_PHOAS
          Length = 347

 Score = 94.4 bits (233), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 16/147 (10%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-----LDIKIDRTEAFNLFIK 55
           +  ++     WTS AV+T  +    +   ++   L V       +   +D       F+ 
Sbjct: 46  VSYAYYAQSWWTSTAVITTNKARDIRIFSENIDNLYVNSGVGGLVSQALDEKRLLRTFVN 105

Query: 56  KFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 115
            F + +   E+L  +  +       K     L R I  +           + +K      
Sbjct: 106 YFNAYNNKLEFLEGNKSIKSDFINEKEKHDFLQRFIKRI-----------NSEKVGNDSQ 154

Query: 116 TSWTLSFTAPTSEEAQTVLSGYIDYIS 142
             ++LS+TA +S ++  +LS YI++I+
Sbjct: 155 VLYSLSYTATSSIKSHDLLSEYINFIN 181


>UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae
           RepID=B0BR52_ACTPJ
          Length = 370

 Score = 93.7 bits (231), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 8/144 (5%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQ 58
           + +F   +KWTS   V  P      E     K +  +   +      R E   LF +   
Sbjct: 44  VYAFTAKEKWTSQTEVIAPRVTDISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVL 103

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S      + +++       +    +E+ L RA+   + +   V    +KK       +  
Sbjct: 104 SYDEAIAFFKTTDTYKKLAE--TENEVGLQRAVAEFTTESLKVIKPDAKKDPNALG-SKI 160

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
            +SF   T+  AQT L+ +I +IS
Sbjct: 161 AISF--DTALSAQTTLNDFICHIS 182


>UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas
           RepID=A1SRR6_PSYIN
          Length = 347

 Score = 93.3 bits (230), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 24/163 (14%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----------------------D 39
            +    + W +   V  P+      L     K+  +                       +
Sbjct: 13  YALNAQEWWVAKGKVIAPQVNDVAALYAQSNKVSAILNSNDLLNSNSNNNGQDTKQVSKE 72

Query: 40  LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMK 99
           L    + +  F  FI  F S    + +L ++P  +  L+  +I       A  +  + + 
Sbjct: 73  LVDLFEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKGSAQESRQQYLI 132

Query: 100 AVDDNASK-KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 141
            +++  +K      S  +   LSF + T E +  +L+ YI +I
Sbjct: 133 VLNNWMNKINASLNSQTSELALSFRSATKESSAELLNEYILFI 175


>UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65U41_MANSM
          Length = 260

 Score = 91.4 bits (225), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDL-DIKIDR-TEAFNLFIKKFQSVS 61
           S++    WT  + +  P   +       ++  ++L+      D   + FN F +   S  
Sbjct: 34  SYLAKNLWTVQSSLEKPALTELGNYYSLYSTYQLLNNEKANQDPTGDIFNRFKQLAGSYE 93

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
             + +  ++ Y   +L     D     + +  LS ++K +D NA+  +          LS
Sbjct: 94  HAKVFWENTDYYKQKL---TDDSQHDSQLLDQLSREIKLLDTNAATTQ----------LS 140

Query: 122 FTAPTSEEAQTVLSGYIDYI 141
                 + A+ +L+ YIDY 
Sbjct: 141 LELDNPKRARELLTEYIDYT 160


>UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium
           profundum 3TCK RepID=Q1Z8B9_PHOPR
          Length = 349

 Score = 91.4 bits (225), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-----DLDIKIDRTEAFNLFIKK 56
           + +F   + W+S+ ++T         L    + L ++      L+      + F  FI +
Sbjct: 43  IYAFNSQEWWSSSEIITEANYNDLSSLRNDVSPLFIVAAKTEKLEKIFSPNKIFIDFINE 102

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 115
           +       E++ S+  +  ++   K  +E   +  +   S K+K      + K       
Sbjct: 103 YNKPLTKSEFILSNDLLKIKMSNQKLEEEQQKNAFVKFWSNKIKYKKQGDNFK------- 155

Query: 116 TSWTLSFTAPTSEEAQTVLSGYIDYI 141
               L F + ++EE+Q +LS Y  ++
Sbjct: 156 ----LIFESNSAEESQLLLSQYSKFV 177


>UniRef50_A7JRK0 Lipopolysaccharide chain length determinant protein n=2
           Tax=Mannheimia haemolytica RepID=A7JRK0_PASHA
          Length = 270

 Score = 88.7 bits (218), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 21/149 (14%)

Query: 4   SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDI---------KIDRTEAFNLFI 54
           S+  P+KW   A    P            +    L+ +          +    + +  F 
Sbjct: 26  SYTQPEKWKVTAQFEQPTIPDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEFK 85

Query: 55  KKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114
           +   S  LL+ YL  +  V  + + AK         + A   +    + + +   D    
Sbjct: 86  RNLTSADLLQAYLLQTEAVKLKAQVAKKSP----AVVAAELVEQFRFEKDMATSADN--- 138

Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                +S  A  +EEAQ +L+ +I  ++T
Sbjct: 139 -----VSLIAENAEEAQKLLADFIPLVNT 162


>UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinobacillus
           pleuropneumoniae RepID=A3N2K1_ACTP2
          Length = 292

 Score = 87.5 bits (215), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 36/168 (21%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEA----------- 49
             +S +  Q W + A   PP+          F+    L+    +                
Sbjct: 21  FGLSSLDTQTWKATAEFEPPKVSTLGNYYTLFSTYTFLNGGDGVSYNVIADDKGSLSLAP 80

Query: 50  --------------FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALS 95
                         +N F +   S  +L E+L  +  V  + +      L     ++   
Sbjct: 81  EIGRKAEDSATLGSYNEFKRNLISTDVLVEFLTQTETVKLKAQ------LTHQPIVMTAQ 134

Query: 96  EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
              +     A+ K          +LS  +   EEA  +L+ +I + + 
Sbjct: 135 SLAEQFVFQAATK-----TQPFDSLSVRSANPEEAYKLLNDFIAFANQ 177


>UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteurella multocida
           RepID=Q9CNG7_PASMU
          Length = 277

 Score = 86.4 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI--DRTEAFNLFIKKFQ 58
              S++  + W + A V+ P+           +  + +        +    +  F+K+  
Sbjct: 33  YGGSYLKSKTWLAEAHVSAPDIALLGNYYALSSTYQFIKNKENQRQETEIVYQEFLKQLM 92

Query: 59  SVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 118
           S  ++  +  ++ Y     K+   D +DL  A++    K        +    +       
Sbjct: 93  SEEMIRRFWENTEYYKQ--KQTGEDHIDL--ALLEKLTKAIKFKSAQTLDVAD------- 141

Query: 119 TLSFTAPTSEEAQTVLSGYIDYIS 142
           ++S      + A  +LS +ID ++
Sbjct: 142 SVSLALENPKLATELLSSFIDQVN 165


>UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinobacillus minor
           RepID=C5S436_9PAST
          Length = 256

 Score = 85.2 bits (209), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 22/152 (14%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID---------RTEAFN 51
              +   P +W ++A    P+  +       F+   ++  D                ++ 
Sbjct: 20  FAGAKFQPTQWQASAQFEHPQTAELGNYLTLFSTYHLISGDTAAADISKMEAKAAEASYT 79

Query: 52  LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 111
            F K  QS   L ++L +S  V  Q K   I E  + + +    +     +         
Sbjct: 80  EFKKNIQSQEKLAQFLTNSALVKAQAKIEGISEQAMVQQLSKHFQFTSGNNQPD------ 133

Query: 112 PSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 143
                  TLS T+ +++EA  +   Y+ Y++T
Sbjct: 134 -------TLSLTSFSTQEADNLFGEYLRYVNT 158


>UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudomonas aeruginosa
           RepID=Q02PW5_PSEAB
          Length = 360

 Score = 84.4 bits (207), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 15/140 (10%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 62
            +F+    + +   + PP          +  +   L        ++ +++F +  QS   
Sbjct: 46  YAFLSKPVYEARVALLPPSLSDVAGFNIARGRDSGL---PPFTVSQVYSVFTRNLQSEGT 102

Query: 63  LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 122
             ++ R     +  L+E K     L+RA            D+ S  +    L   +T+  
Sbjct: 103 RRQFFR--EVYLPSLEERKGSIDGLYRA----------FSDDVSVNRPSKDLPERYTVIL 150

Query: 123 TAPTSEEAQTVLSGYIDYIS 142
                E+A      Y D  +
Sbjct: 151 NRQDPEQAAKWAKQYADLAA 170


>UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas
           entomophila L48 RepID=Q1ID96_PSEE4
          Length = 346

 Score = 82.5 bits (202), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           L+  F +P ++ +     PP      +L   + +    +L   I   + ++ +++   S 
Sbjct: 42  LVYVFYVPSRYEAKLFTIPPTQNDIAQLN--YGRGGSAEL-PLISVGDVYSSYVRNLNSE 98

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           S+  E+  +  Y     ++ K     L   +        ++                + +
Sbjct: 99  SMRMEFF-NDVYFPSLAEKQKTS---LRSDLYRQFFAALSILQG------GKDQSDRYLI 148

Query: 121 SFTAPTSEEAQTVLSGYIDYI 141
           + ++ + EEA   +  Y    
Sbjct: 149 TASSSSPEEAAKWVKQYTQMA 169


>UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter
           caesariensis RepID=Q2BJF5_9GAMM
          Length = 353

 Score = 81.7 bits (200), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRT----EAFNLFIKKF 57
             SF+    + S+AV+  P      E+ K  T L+ +             + F  FI   
Sbjct: 44  AYSFLSTPIYQSSAVLASPSESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISAL 103

Query: 58  QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 117
            S      +L                            +  K  +        +      
Sbjct: 104 NSNRYKNSFL-----------SKPELLDHFRNDNTTQLQARKEFNRALKVTLPDTEEINH 152

Query: 118 WTLSFTAPTSEEAQTVLSGYIDYIST 143
            T+S    + E + + L+ YI +   
Sbjct: 153 ITISLRTKSPELSSSWLNEYISFAHQ 178


>UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_PSEAE
          Length = 344

 Score = 81.0 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 46/145 (31%), Gaps = 18/145 (12%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIK-IDRTEAFNLFIKKFQS 59
           ++ +F     + + A V PP   +          L   + D+      + +++FI+   +
Sbjct: 44  VVYAFYSRPIYEARASVLPPSLNEISGFN-----LGRKESDLGVFSVKDIYDVFIRNLMA 98

Query: 60  VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
               + + +        L        +   A+         +                + 
Sbjct: 99  EETRQNFFKE-----KYLPTLGDKGAESLDALYNKFNDELQIK-------ASVDGSGRYL 146

Query: 120 LSFTAPTSEEAQTVLSGYIDYISTL 144
           +S  A  S+ A  ++  YI+ ++ +
Sbjct: 147 ISAVAHESDTAAYLVDSYIEMVAGI 171


>UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium
           damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA
          Length = 352

 Score = 80.6 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRV-----LDLDIKIDRTEAFNLFIK 55
           L++S    Q W S+A +T P+   +     S  +L         L   I+  + +N FI 
Sbjct: 42  LIVSIYSAQWWESSAEITKPQYSDYAVFISSADQLTTGSNPSESLKSIINIEKNYNSFIN 101

Query: 56  KFQSVSLLEEYLRSSPYVMDQLKEAK-IDELDLHRAIVALSEKMKAVDDNASKKKDEPSL 114
              S +   ++L+ S  +           ++   +A+   +EK+        KK+     
Sbjct: 102 ILTSKTNKIDFLQQSNIIKSYFIRDGVKTDIQKDKALDLWAEKIIV------KKESLILN 155

Query: 115 YTSWTLSFTAPTSEEAQTVLSGYIDYI 141
            +S+ +   A T +++  +L+ YI + 
Sbjct: 156 KSSYIVIAQANTLDDSFKLLNNYIKFT 182


>UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia
           RepID=A1JMR4_YERE8
          Length = 363

 Score = 73.3 bits (178), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 23/141 (16%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
            + F  P++WTS A+V+     + Q LE   + L VL++D+ I   +    F K + S  
Sbjct: 57  GVVFFSPKEWTSYAIVSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKD 116

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
           +L +Y+                  +   A      K K ++ ++  K +       + L+
Sbjct: 117 MLSKYM----------------SKEKVNANNFAGLKGKNINSDSDVKGN-------YILT 153

Query: 122 FTAPTSEEAQTVLSGYIDYIS 142
           +++      + V +GY++YI+
Sbjct: 154 YSSNLEYGLKDVFTGYVNYIN 174


>UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae
           RepID=WZZB3_ECOLX
          Length = 325

 Score = 72.1 bits (175), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 33/142 (23%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID-RTEAFNLFIKKFQS 59
           +    +  +KWTS A++T P+  Q      +   +         D +      F   F +
Sbjct: 46  IGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSA 105

Query: 60  VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
                            L E   ++ +  +  +  S K + +                 T
Sbjct: 106 -----------------LAETLDNQEEPEKLTIEPSVKNQQL---------------PLT 133

Query: 120 LSFTAPTSEEAQTVLSGYIDYI 141
           +S+   T+E AQ  L+ YI  +
Sbjct: 134 VSYVGQTAEGAQMKLAQYIQQV 155


>UniRef50_A4NGY6 Heat shock protein 90 n=5 Tax=Haemophilus influenzae
           RepID=A4NGY6_HAEIN
          Length = 136

 Score = 71.7 bits (174), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 9/109 (8%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI---------DRTEAFN 51
              + + P KW   A    P+  +       F+   ++  D                A +
Sbjct: 15  FAGAHVHPTKWQVRAQFEAPKINELGNYFSLFSTYSLVSGDADTVDMVKIERKATDSANH 74

Query: 52  LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKA 100
            F K   S + L  +L  S +V  + K        +        E    
Sbjct: 75  EFTKILTSSAQLMAFLNQSDFVKARAKVENETIQQIASHFKFSQENNLN 123


>UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica
           RepID=WZZB_SALTY
          Length = 327

 Score = 70.2 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 31/140 (22%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
               I  +KWTS A++T P+  Q      +   L   +       +E    FI +F S  
Sbjct: 47  GYLMIAKEKWTSTAIITQPDAAQVATYTNALNVLYGGNAPKI---SEVQANFISRFSS-- 101

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
               +          L E   ++ +  +  +  S K +A+                 ++S
Sbjct: 102 ---AF--------SALSEVLDNQKEREKLTIEQSVKGQAL---------------PLSVS 135

Query: 122 FTAPTSEEAQTVLSGYIDYI 141
           + + T+E AQ  L+ YI  +
Sbjct: 136 YVSTTAEGAQRRLAEYIQQV 155


>UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_PSEAE
          Length = 345

 Score = 50.5 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 30/142 (21%), Gaps = 13/142 (9%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
              +++    +     V PP     +       +    +          + +F +   S 
Sbjct: 35  FTYAYLSKPVYEYRVAVVPPALGSIEGFNIGRRE----NGLDAYTVRSIYAIFSRNLLSD 90

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
              +E+          L +                E  K                  +T+
Sbjct: 91  ENKKEFF-----YKIYLPQVGEGAESE----DEQEEFYKKFSKEVKIDPANKPDADRYTV 141

Query: 121 SFTAPTSEEAQTVLSGYIDYIS 142
                  E   T    ++   +
Sbjct: 142 IVEGTKREVLATWAQAFVRLAA 163


>UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 Tax=Thiomicrospira
           crunogena XCL-2 RepID=Q31F07_THICR
          Length = 364

 Score = 49.4 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 48/141 (34%), Gaps = 7/141 (4%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 61
           + +F +   + S A + PP+  + Q++ +    L + D        + FN + +   S +
Sbjct: 49  IYAFSVTPVYKSDAYLLPPKASEIQDINRLNATLGIGD---AYSVNDVFNTYTENLLSRA 105

Query: 62  LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 121
            L  + +    +     + K  E ++            +                   + 
Sbjct: 106 RLLTFFKQHNLIAFYEPDFKNKEKEVR---EKEFNDSFSTFVEEFGITHPKDGAKRVMVE 162

Query: 122 FTAP-TSEEAQTVLSGYIDYI 141
            T P  +++ +  L+ YI  I
Sbjct: 163 MTLPVDADQVKEFLTQYIQKI 183


>UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP12
           RepID=C6MYW2_9GAMM
          Length = 344

 Score = 44.0 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/143 (6%), Positives = 41/143 (28%), Gaps = 8/143 (5%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
             + F     + +A  VT               +         +   + + +F  +  S 
Sbjct: 38  FAVVFFSKPVYEAAIKVTAASEGDIAAFN--LGRSWNKSALKPMSAADIYLIFNNELLSE 95

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
           +  + +     + +  L   + ++        +  +    ++      +     ++ +T+
Sbjct: 96  TAKKAFFNQ--FYLSSLSLQQKEKYSSAHLYASFIKNFAIIEHPKGVSEA----FSKFTI 149

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           +      ++    L  ++  +  
Sbjct: 150 AIRGDNPQQVTIWLKQFLHVVQA 172


>UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Tax=Pseudomonas
           fluorescens SBW25 RepID=C3KAZ7_PSEFS
          Length = 438

 Score = 42.8 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 15/142 (10%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELE-KSFTKLRVLDLDIKIDRTEAFNLFIKKFQS 59
           +  +F+ P+ +  ++V+ P    +   L      KL   D   K+           +  S
Sbjct: 44  VGYAFLAPRVYQVSSVLRPAAINELDALNRSEVYKLPPADALAKVGA---------QLDS 94

Query: 60  VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 119
                 + R++   +   +  +     L ++  A ++    +     KK D         
Sbjct: 95  YETRLGFFRAN---LPLFEAFQQPGRSLEQSFEAFNQNAINLVGADPKKPDAL--NNYLR 149

Query: 120 LSFTAPTSEEAQTVLSGYIDYI 141
           L    P   +   +L+G + Y 
Sbjct: 150 LEMQYPNGIDGVAILNGLVAYA 171


>UniRef50_P43943 Uncharacterized protein HI0109 n=7 Tax=Haemophilus influenzae
           RepID=Y109_HAEIN
          Length = 113

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 18/98 (18%)

Query: 45  DRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDN 104
               A++ F K   S + L  +L  S +V  + K        +        E        
Sbjct: 8   ATDSAYHEFTKILTSSAQLMAFLNQSDFVKARAKVENETVQQIASHFKFSQENNLN---- 63

Query: 105 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
                          L  ++   EE   +   YI Y++
Sbjct: 64  --------------QLILSSFDREEVDQLFVEYIRYVN 87


>UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n=3 Tax=Providencia
           rettgeri DSM 1131 RepID=UPI0001C34705
          Length = 318

 Score = 40.9 bits (94), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 39/143 (27%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD--LDIKIDRTEAFNLFIKKFQSV 60
              +   +WTS   ++ PE  Q     ++           D     T+ FNLF+    + 
Sbjct: 40  YLALAKPQWTSVVFISSPELGQLSNYPEAVDLSLREQTWADKADLSTKVFNLFLANIDAY 99

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
              E                                       N+     +P +     L
Sbjct: 100 IERE-------------------------------------KPNSPVAIFKPEVGNYRVL 122

Query: 121 SFTAPTSEEAQTVLSGYIDYIST 143
           +F++  ++ AQ+ L+  + +++ 
Sbjct: 123 TFSSTNAKLAQSELTELVAFLNQ 145


>UniRef50_UPI000197C816 regulator of length of O-antigen component of lipopolysaccharide
           chains n=2 Tax=Providencia rettgeri DSM 1131
           RepID=UPI000197C816
          Length = 332

 Score = 40.9 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 43/146 (29%)

Query: 2   LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID-----RTEAFNLFIKK 56
           +       KWTS A+++ PE  Q      + + L +   D          T+ FNLF+  
Sbjct: 42  VYLVFAKPKWTSQALISLPEIGQLSNYPTAVS-LSLNSADNMGTYDMSLPTKVFNLFLAN 100

Query: 57  FQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 116
             +  + +                                       N      +P    
Sbjct: 101 VDADIVKD-------------------------------------KSNTPLSISKPKDAN 123

Query: 117 SWTLSFTAPTSEEAQTVLSGYIDYIS 142
            + LS +A  ++ AQ  L+ ++++++
Sbjct: 124 YYILSLSASNAKLAQLELTEWLNFLN 149


>UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinobacter sp. ELB17
           RepID=A3JJA1_9ALTE
          Length = 378

 Score = 40.5 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 50/139 (35%), Gaps = 10/139 (7%)

Query: 1   LLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
           + ++ + P+ +  +  ++      + +       L+       I     F++F+ +F   
Sbjct: 40  IAVNVLKPELYNGSTALSKAPSSSFIKYSSVNETLQQSGFSYAISSQSVFDMFVTEFADY 99

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 120
             + + L  S Y+  +L+     E++     +    K   +   +            W+L
Sbjct: 100 DEVVKILEKSDYIKQRLQAI---EIEDRNDFLVYMAKNFEILPPS-------ENGNHWSL 149

Query: 121 SFTAPTSEEAQTVLSGYID 139
            +    S E++ + +  I+
Sbjct: 150 DYEWRDSNESKKIFTQSIE 168


>UniRef50_B2A9W3 Predicted CDS Pa_1_2000 n=4 Tax=Sordariales RepID=B2A9W3_PODAN
          Length = 1534

 Score = 39.4 bits (90), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 30/85 (35%)

Query: 25   WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 84
              +L+ +   +  +D+   +       +F  + QS  +  +++    Y   ++   K+D 
Sbjct: 1076 LSKLDSNLLLVTPVDVQPIMVVQNVLRMFEAELQSNDITGQFIIEDSYRDLEVDWVKLDP 1135

Query: 85   LDLHRAIVALSEKMKAVDDNASKKK 109
              L + ++ L             + 
Sbjct: 1136 SRLRQVLINLMTNAIKFTQGRPTRS 1160


>UniRef50_A3UQV9 Putative uncharacterized protein n=1 Tax=Vibrio splendidus 12B01
           RepID=A3UQV9_VIBSP
          Length = 349

 Score = 39.0 bits (89), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 39  DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKM 98
            LD       +F LFI +F   S    + + +   ++  K                    
Sbjct: 151 SLDNLTQDKSSFELFINEFNKESSKSLFYKENEEYINSGKSESE---------------- 194

Query: 99  KAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 142
                +   ++ +      + L + + + E +  VL  Y+ +I+
Sbjct: 195 --FIYSLKAERVDKVNADKYYLKYISNSKEVSYKVLGEYVKFIN 236


>UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanella marisrubri
           RepID=Q1N5G1_9GAMM
          Length = 388

 Score = 38.2 bits (87), Expect = 0.077,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 9/146 (6%)

Query: 3   ISFILPQKWTSAAVVTPPEPVQWQELE--KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV 60
                 + + +  V+ PP  V   EL   +          +  I   E F   +   Q+ 
Sbjct: 50  YLLRATEIFETQVVIKPPSDVHVLELNPPQLSATKLSSKGEAVIYEDEIFG--LTAEQAY 107

Query: 61  SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNA-----SKKKDEPSLY 115
              ++ + S  Y     K+      +            +   +       S    +    
Sbjct: 108 QEAQKAVLSKEYRKAFFKDHIPVIEEFGTVYSDKLLMNQNFANFDRLFSFSVSNAKKDTE 167

Query: 116 TSWTLSFTAPTSEEAQTVLSGYIDYI 141
               LSF  P S+E+  +L+ ++ Y 
Sbjct: 168 QFTKLSFEFPDSQESAELLNAFVVYA 193


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.305    0.127    0.308 

Lambda     K      H
   0.267   0.0383    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,357,572
Number of Sequences: 3077464
Number of extensions: 11241537
Number of successful extensions: 86249
Number of sequences better than 1.0e-01: 61
Number of HSP's better than  0.1 without gapping: 123
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 85903
Number of HSP's gapped (non-prelim): 182
length of query: 144
length of database: 1,040,396,356
effective HSP length: 108
effective length of query: 36
effective length of database: 708,030,244
effective search space: 25489088784
effective search space used: 25489088784
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 87 (38.2 bits)
