BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (229 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P08368 Transcriptional regulatory protein creB n=64 Tax... 466 e-130 UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bac... 217 2e-55 UniRef50_A1VI78 Two component transcriptional regulator, winged ... 207 3e-52 UniRef50_A9BP07 Two component transcriptional regulator, winged ... 204 2e-51 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 203 4e-51 UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Ps... 197 2e-49 UniRef50_B4WZT8 Response regulator receiver domain protein n=1 T... 194 3e-48 UniRef50_C8NC13 DNA-binding response regulator n=1 Tax=Cardiobac... 191 2e-47 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 190 3e-47 UniRef50_D0KVI4 Two component transcriptional regulator, winged ... 184 1e-45 UniRef50_B0SB02 Sensor protein of a two-component response regul... 183 4e-45 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 181 1e-44 UniRef50_UPI000038414E COG0745: Response regulators consisting o... 181 1e-44 UniRef50_C4RGF6 Two-component system response regulator receiver... 177 2e-43 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 176 4e-43 UniRef50_A6VZA5 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_Q9R609 Adaptive response regulator CREB (Fragment) n=44... 174 3e-42 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 173 4e-42 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 173 4e-42 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 168 1e-40 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 168 1e-40 UniRef50_D0LHP7 Two component transcriptional regulator, winged ... 167 2e-40 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 166 4e-40 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 166 4e-40 UniRef50_B4U9Z2 Two component transcriptional regulator, winged ... 166 7e-40 UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1... 166 8e-40 UniRef50_C5B9J0 Transcriptional regulatory protein CreB n=2 Tax=... 165 1e-39 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 164 2e-39 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 164 2e-39 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 162 6e-39 UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenel... 161 1e-38 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_B8G179 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 160 2e-38 UniRef50_B4RCQ3 Response regulator n=3 Tax=Alphaproteobacteria R... 160 3e-38 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_B8JG70 Two component transcriptional regulator, winged ... 159 8e-38 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 159 1e-37 UniRef50_A6G8V6 DNA-binding response regulator n=1 Tax=Plesiocys... 159 1e-37 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 158 1e-37 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_A8LCN3 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_D1KBY7 Putative uncharacterized protein n=1 Tax=uncultu... 158 2e-37 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 157 2e-37 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 157 3e-37 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 156 5e-37 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 156 5e-37 UniRef50_C4L703 Two component transcriptional regulator, winged ... 156 5e-37 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 156 6e-37 UniRef50_Q6MA20 Putative two-component response regulator phoP n... 156 6e-37 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 155 8e-37 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 155 9e-37 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostrid... 155 1e-36 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_B2V706 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 154 3e-36 UniRef50_B0SW50 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 153 4e-36 UniRef50_Q1IY67 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_A7HMZ4 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 152 8e-36 UniRef50_B9MF92 Two component transcriptional regulator, winged ... 152 9e-36 UniRef50_A8UXR4 Two component transcriptional regulator, winged ... 152 9e-36 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 151 1e-35 UniRef50_C4GKG1 Putative uncharacterized protein n=1 Tax=Kingell... 151 2e-35 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 151 2e-35 UniRef50_Q9KAM3 Two-component response regulator n=1 Tax=Bacillu... 151 2e-35 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 150 2e-35 UniRef50_A9GK22 Response regulator n=1 Tax=Sorangium cellulosum ... 150 2e-35 UniRef50_O66657 Transcriptional regulator (PhoB-like) n=2 Tax=Aq... 150 3e-35 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 150 3e-35 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_Q0FDL9 Two-component transcriptional regulator ChvI, wi... 150 4e-35 UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridi... 150 4e-35 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 150 4e-35 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 149 6e-35 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 149 6e-35 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_D2R5T3 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_P50351 Transcriptional regulatory protein chvI n=188 Ta... 149 7e-35 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 149 7e-35 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 149 7e-35 UniRef50_C1IA20 Two-component system response regulator n=1 Tax=... 149 8e-35 UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax... 149 8e-35 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 149 9e-35 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_A9G6M8 Two-component response regulator n=1 Tax=Sorangi... 148 1e-34 UniRef50_C4L340 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_D0MGI0 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_Q1VFU1 Two-component response regulator CreB n=6 Tax=Vi... 148 1e-34 UniRef50_D1C280 Two component transcriptional regulator, winged ... 148 2e-34 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 147 2e-34 UniRef50_A0Z7U3 Response regulator receiver domain protein (CheY... 147 2e-34 UniRef50_C1DA69 DNA-binding response regulator n=1 Tax=Laribacte... 147 2e-34 UniRef50_A5WE25 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory pro... 147 3e-34 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 147 3e-34 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 147 3e-34 UniRef50_Q5WC24 Two-component response regulator n=1 Tax=Bacillu... 147 3e-34 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 147 4e-34 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 146 4e-34 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 146 5e-34 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 146 5e-34 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 146 6e-34 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 146 6e-34 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 146 6e-34 UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=I... 145 7e-34 UniRef50_C9ZA01 Putative two-component system response regulator... 145 8e-34 UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional r... 145 9e-34 UniRef50_A3ERN0 Putative two component transcriptional regulator... 145 9e-34 UniRef50_D0IVE7 Two component transcriptional regulator, winged ... 145 9e-34 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 145 9e-34 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 145 1e-33 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_Q2G7F8 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_Q2S085 Response regulator DrrA n=1 Tax=Salinibacter rub... 145 1e-33 UniRef50_D1VIP6 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_Q484N4 Transcriptional regulatory protein CpxR n=1 Tax=... 145 1e-33 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 144 2e-33 UniRef50_Q1J3D6 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory pro... 144 2e-33 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 144 2e-33 UniRef50_C0QZY4 OmpR n=2 Tax=Brachyspira RepID=C0QZY4_BRAHW 144 2e-33 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 144 3e-33 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 143 3e-33 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 143 4e-33 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 143 4e-33 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 143 4e-33 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 143 4e-33 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 143 5e-33 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 143 5e-33 UniRef50_B1I7Y4 Response regulator SaeR n=46 Tax=Firmicutes RepI... 143 5e-33 UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae ... 142 6e-33 UniRef50_B8G869 Two component transcriptional regulator, winged ... 142 7e-33 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 142 7e-33 UniRef50_A0LCI2 Two component transcriptional regulator, winged ... 142 7e-33 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 142 8e-33 UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxal... 142 8e-33 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 142 9e-33 UniRef50_Q4HSL5 Phosphate regulon response regulator PhoB n=3 Ta... 142 9e-33 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 142 9e-33 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_UPI0001B559F0 two-component system, response regulator ... 142 1e-32 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 142 1e-32 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 142 1e-32 UniRef50_D1U362 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 142 1e-32 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 141 1e-32 UniRef50_Q3ATG7 Two component transcriptional regulator, winged ... 141 1e-32 UniRef50_B1C8W4 Putative uncharacterized protein n=1 Tax=Anaerof... 141 1e-32 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_Q2BDB2 Two-component response regulator n=1 Tax=Bacillu... 141 2e-32 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_C8X3Y5 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_A9FLR1 DNA-binding response regulator n=1 Tax=Sorangium... 140 3e-32 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 140 3e-32 UniRef50_Q12IJ0 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_B8I272 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 140 3e-32 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 140 3e-32 UniRef50_C6CHY9 Two component transcriptional regulator, winged ... 140 4e-32 UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 T... 140 4e-32 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 140 5e-32 UniRef50_C8NR68 DNA-binding response regulator n=12 Tax=Bacteria... 139 5e-32 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 139 5e-32 UniRef50_A8R858 Putative uncharacterized protein n=2 Tax=unclass... 139 5e-32 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 139 5e-32 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 139 6e-32 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 139 7e-32 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 139 7e-32 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 139 7e-32 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 139 8e-32 UniRef50_C0WE14 Two-component system transcriptional regulator n... 139 8e-32 UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged... 139 9e-32 UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromon... 139 1e-31 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 139 1e-31 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 139 1e-31 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 138 1e-31 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 138 1e-31 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 138 2e-31 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 138 2e-31 UniRef50_D0RQG1 Regulatory protein BvrR n=1 Tax=alpha proteobact... 138 2e-31 UniRef50_A7VHB9 Putative uncharacterized protein n=5 Tax=Firmicu... 138 2e-31 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 138 2e-31 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 137 2e-31 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 137 2e-31 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 137 2e-31 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 137 2e-31 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 137 2e-31 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 137 2e-31 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 137 2e-31 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 137 3e-31 UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerof... 137 3e-31 UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermom... 137 3e-31 UniRef50_Q0IC97 DNA-binding response regulator n=3 Tax=Synechoco... 137 3e-31 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 137 3e-31 UniRef50_A4VMA3 DNA-binding response regulator n=8 Tax=Pseudomon... 137 4e-31 UniRef50_UPI0001C31E43 two component transcriptional regulator, ... 137 4e-31 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 137 4e-31 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 137 4e-31 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 137 4e-31 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 137 4e-31 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 137 4e-31 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 136 4e-31 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 136 4e-31 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 136 5e-31 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 136 5e-31 UniRef50_A8GHG0 Two component transcriptional regulator, winged ... 136 5e-31 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 136 6e-31 UniRef50_B3PFT8 AbfR arabinofuranosidase two component system re... 136 6e-31 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 136 6e-31 UniRef50_Q2RZP1 PhoP3 response regulator n=2 Tax=Rhodothermaceae... 136 7e-31 UniRef50_C9RRV7 Two component transcriptional regulator, winged ... 136 7e-31 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 135 7e-31 UniRef50_A1SG19 Response regulator receiver n=7 Tax=Actinomyceta... 135 8e-31 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 135 8e-31 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 135 8e-31 UniRef50_C4Z6D1 Two-component system, OmpR family, copper resist... 135 8e-31 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 135 8e-31 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 135 9e-31 UniRef50_C6X1B3 Phosphate regulon transcriptional regulatory pro... 135 9e-31 UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromon... 135 1e-30 UniRef50_A5EY83 Two component phosphate response regulator PhoB ... 135 1e-30 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 135 1e-30 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 135 1e-30 UniRef50_B2TMR2 Transcriptional regulatory protein ResD n=1 Tax=... 135 1e-30 >UniRef50_P08368 Transcriptional regulatory protein creB n=64 Tax=Proteobacteria RepID=CREB_ECOLI Length = 229 Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI Sbjct: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR Sbjct: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM Sbjct: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL Sbjct: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 >UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bacteria RepID=Q4K4R2_PSEF5 Length = 229 Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/220 (50%), Positives = 150/220 (68%), Gaps = 3/220 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE IADTL++ LQ EGF G L+ + D++ILD+GLPDISGFE Sbjct: 7 ILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPDISGFET 66 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C+QL +PV+FL+AR E+DR++GLEIGADDYV KPFSPREV ARV+ +L+R+ Sbjct: 67 CKQLRRFS-EVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMVPR 125 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 P V + F ++ QIS+ PL+LTR+EF LL+ LL+ P RV+SR+QL+D++ Sbjct: 126 VAPEAVAAL--FVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDALGV 183 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 A Y+R +D+HIK+LRAKLR + PI THRG+GYS Sbjct: 184 MADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGYS 223 >UniRef50_A1VI78 Two component transcriptional regulator, winged helix family n=54 Tax=Bacteria RepID=A1VI78_POLNA Length = 282 Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 159/246 (64%), Gaps = 20/246 (8%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 + + + +VEDE GIADTL Y+L +GFA L + +P ++ILD+GLPD+ Sbjct: 30 LNKPRILVVEDESGIADTLQYVLSTDGFAPVWCSTAGQALREFSAGLPALVILDIGLPDL 89 Query: 61 SGFELCRQLLAL--HPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 +GFEL ++L AL +P+LFLTARS+E+DR++GLE+GADDY+AKPFSPRE+ ARVR + Sbjct: 90 NGFELFKRLQALPGGAQVPMLFLTARSDEIDRVVGLELGADDYIAKPFSPRELVARVRGI 149 Query: 119 LRR-------------VKKFSTPSPV-IRIGH----FELNEPAAQISWFDTPLALTRYEF 160 LRR + S +P+ +R+ F L+E QI ++ L L+RYE+ Sbjct: 150 LRRSVRQPLAAPLPEPPQPASGATPMAVRMEAAATPFALDEERRQIRFYGRVLELSRYEY 209 Query: 161 LLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHR 220 +L+ L+ PGRV++R +L D VW D + DRT+D HIKTLRAKL+A+ P PI T R Sbjct: 210 GILRLLVLRPGRVFTRDELFDQVWTDGSGSLDRTIDAHIKTLRAKLKAVAPHAEPIRTSR 269 Query: 221 GMGYSL 226 G GY+L Sbjct: 270 GSGYAL 275 >UniRef50_A9BP07 Two component transcriptional regulator, winged helix family n=14 Tax=cellular organisms RepID=A9BP07_DELAS Length = 239 Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 109/224 (48%), Positives = 145/224 (64%), Gaps = 3/224 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V LVED+ IA T+ Y L+++G AV + + + Q PD ++LDVGLPD +G + Sbjct: 12 VLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLDW 71 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L A+P+L L+AR EE+DR+LGLE+GADDY+ KPFSPRE+ AR R LLRRV++ Sbjct: 72 CRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQRL 131 Query: 126 STPSPVIRIGH---FELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 F ++ ++ PL LTR E+ LL+ LL+ PGR+ SR+ L+DS Sbjct: 132 QPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLLDS 191 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +W D+ DRTVDTH+KTLRAKLRA P I THRGMGYSL Sbjct: 192 IWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 108/236 (45%), Positives = 149/236 (63%), Gaps = 11/236 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + VEDE I L Y L++EG+ V G L +Q D +ILDVGLPD Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +GFE+C+QL + P+LFLTAR +E+DR++GLEIGADDY KPFS RE+ AR++ + R Sbjct: 62 NGFEVCKQLRQKYQT-PLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWR 120 Query: 121 RV----KKFSTPSPVIRI------GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 R+ + S+ + ++ + N + QI + L LTRYE+ LL L++ P Sbjct: 121 RMEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHP 180 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +V+SRQQLMD +WE + + +RTVDTHIK+LR KL+ I PD PI THRG GYSL Sbjct: 181 EKVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236 >UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Pseudomonadaceae RepID=B3PD41_CELJU Length = 240 Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 103/229 (44%), Positives = 149/229 (65%), Gaps = 10/229 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVE---VFERGLPVLDKARKQVP-DVMILDVGLPDIS 61 + ++EDE IA++LV++L+ E F + R L L + ++ P D++++DVGLPD++ Sbjct: 6 ILILEDEPSIAESLVFVLESESFTTHWETLASRALAYLQASPQRQPVDLVVMDVGLPDMT 65 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE C+QL +PV+FLTAR E+DR++GLEIGADDYV KPFSPRE+ ARV+ +L+R Sbjct: 66 GFEACKQLRRFS-EVPVIFLTARGSELDRVVGLEIGADDYVVKPFSPRELAARVKAILKR 124 Query: 122 VKKF-----STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 ++ S + V F ++ I + L LTR EF LL+ ++ PGRV+SR Sbjct: 125 TRQVGATLASAAADVQDASEFVIDTERKTIHYHQQLLGLTRLEFSLLQAMVMQPGRVFSR 184 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 +QL+D++ YDR++D HIKTLRAKLRA+ P PI T RG GY+ Sbjct: 185 EQLLDALGISTDAGYDRSIDGHIKTLRAKLRALKPGAEPIKTLRGFGYA 233 >UniRef50_B4WZT8 Response regulator receiver domain protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZT8_9GAMM Length = 225 Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 106/222 (47%), Positives = 154/222 (69%), Gaps = 4/222 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +VEDE IA+ L++ L++E FAV G LD Q D+++LDVGLPD++GF++ Sbjct: 4 VLIVEDEPRIAEPLMFALEREHFAVTHVTLGQQALDAVAGQAVDLVVLDVGLPDMNGFDV 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-K 124 +QL H LPVLFLTAR +EVDR+LGLE+G DDYV KPFSPREV AR+R +L+R+ K Sbjct: 64 LKQLRQ-HSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKRLGPK 122 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + +++++ ++ + T L+LTR E+ +L T+++ PG+V+SR QL+D + Sbjct: 123 SDADIDTNKTTLWQVDDSGLRVFFRHTELSLTRSEYRILTTMVQRPGQVFSRAQLLD-IC 181 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + +D+++R+VDTHIKTLRAKLR +N D I T RG+GY L Sbjct: 182 DSDEDSFERSVDTHIKTLRAKLRPLNGD-HLIVTRRGIGYLL 222 >UniRef50_C8NC13 DNA-binding response regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NC13_9GAMM Length = 219 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/219 (46%), Positives = 142/219 (64%), Gaps = 7/219 (3%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 L+ED+ IAD L Y L +E + V + G+ L + Q D ++LDVGLPD GFELCR Sbjct: 6 LIEDDPAIADPLSYALAREQWQVVWHDTGIAALAALQAQRFDCIVLDVGLPDTDGFELCR 65 Query: 68 QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFST 127 ++ P++FL+AR+EE+DR++GLE+GADDY KPFS RE+ +R++ + RR + T Sbjct: 66 RIRQ-QWTTPLIFLSARNEEIDRIVGLELGADDYCGKPFSNRELISRIKAVCRRSNETET 124 Query: 128 PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDA 187 S ++ N+ A IS+ T L LTRYE+ LL+ LL PG+ + R QL++++W+ Sbjct: 125 ASV------WQHNDSAQTISYHGTTLDLTRYEYRLLRHLLAHPGQTFDRDQLVNTLWDHP 178 Query: 188 QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +RTVD+HIKTLR KLRAI PD PI T RG GY L Sbjct: 179 DHIDNRTVDSHIKTLRQKLRAIAPDADPIRTRRGYGYHL 217 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/220 (43%), Positives = 144/220 (65%), Gaps = 4/220 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDEQ IA L+ LQ+ GF F G+ V++ + + PD+++LD+ LP +G E+ Sbjct: 8 ILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLEV 67 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C+++ A +P+ +TA EE+DRLLGLE+GADDY+ KPFSPREV AR++ L RR+++ Sbjct: 68 CKEIRAFS-TVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQI 126 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 P P R G F+++E +IS+ + L LT E+ LLK L+ +PGRV+SR QL+D ++ Sbjct: 127 GVPEPT-RTG-FQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCYQ 184 Query: 186 DAQDTYDRTVDTHIKTLRAKLR-AINPDLSPINTHRGMGY 224 Q DR +D+HIK LR K+ A+ P I+ G+GY Sbjct: 185 QEQLIIDRVIDSHIKNLRKKISTALPPGQEVIHAVYGIGY 224 >UniRef50_D0KVI4 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVI4_HALNC Length = 233 Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 107/227 (47%), Positives = 148/227 (65%), Gaps = 7/227 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ LVED++ IA+ ++ L +E + L + R D+ ILDVGLPD +GF+ Sbjct: 4 TILLVEDDRPIAENVILALARENIDCQHVTLVADGLARLRSGGFDLAILDVGLPDGNGFD 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV-K 123 LCR L+ +P++FLTARS+E+DR++GLEIGADDYV KPFSPRE+ ARV+T+LRR Sbjct: 64 LCR-LVRGFSDIPIIFLTARSDEIDRVVGLEIGADDYVLKPFSPRELAARVKTILRRSPA 122 Query: 124 KFSTPSPVIRI----GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 +T S F ++E A + + PL L+R E+L+LKT+ P RV+SR +L Sbjct: 123 SLATSSASPSPSSIQTAFVVDEERAVVLFKSRPLDLSRTEYLILKTMAARPERVFSRAEL 182 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 MD+ A + +R+VDTHIK+LRAKL A+ D PI THRG+GYSL Sbjct: 183 MDAAGL-AAASLERSVDTHIKSLRAKLTALATDSDPIRTHRGLGYSL 228 >UniRef50_B0SB02 Sensor protein of a two-component response regulator n=7 Tax=Bacteria RepID=B0SB02_LEPBA Length = 225 Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 146/226 (64%), Gaps = 11/226 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L+EDE GI +T+ L+ EGF++ + G+ L + +++LD+GLPD SGFE+ Sbjct: 4 ILLIEDEPGIQETIQIALEAEGFSLSIAPTGIQGLQMLADDI-SLILLDIGLPDQSGFEV 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 + + ++PV+FLTARS E+D++LGLEIGADDY+ KPFSPRE+ AR+R +LRR Sbjct: 63 LKSIRK-AASIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAILRR---- 117 Query: 126 STPSPVI----RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 T +P++ ++ + + L L+ YE+ ++ K PGR+++R+++MD Sbjct: 118 -TQNPLVLEQKSNQKLRISLDKKLVYYNGKNLNLSPYEYKTMELFFKWPGRIFTREEIMD 176 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 SVW + +D++DR VDT IK +RA+ + ++P+ PI T RG GY L+ Sbjct: 177 SVWTEPEDSFDRAVDTVIKNIRARFKEMDPNFDPIETRRGQGYGLK 222 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/221 (42%), Positives = 135/221 (61%), Gaps = 1/221 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE IA+ L L+ GF +RG R++ PD+++LD+ LP G E+ Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C++L + +P++ LTAR EE+DRLLGLE+GADDY+ KPFSPREV ARV+ +LRR Sbjct: 67 CKELRSFS-QIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTP 125 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S I G L+E + ++S L LT EF++LK ++ P RV+SR +L+D Sbjct: 126 QEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAIG 185 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + YDRT+D+HI+ LR K++ PDL I++ G GY Sbjct: 186 SQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_UPI000038414E COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038414E Length = 229 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 139/223 (62%), Gaps = 2/223 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q + +VEDE IAD LV L+ G++ G LD+ R+ PD+++LD+ LP + Sbjct: 3 QERKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMD 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +CR+L +PV+ +TAR EE+DRLLGLE+GADDY+ KPFSPREV AR+ +L RR Sbjct: 63 GTAVCRELRRFS-TIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRR 121 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + ++ P P E+++ +I L LT EF L++ L SPGR+++R Q++D Sbjct: 122 M-EWGNPVPASGPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILD 180 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + QD DR +D+H+K +R K+ ++ PD+ I++ G+GY Sbjct: 181 LAYHGDQDVSDRIIDSHVKNIRKKISSVWPDVDVIHSVYGIGY 223 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 102/230 (44%), Positives = 137/230 (59%), Gaps = 8/230 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 QR V +VEDE IAD + L ++GF V + G+ L AR+ P +LD+ LP ++ Sbjct: 7 QRGLVLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLA 66 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR+L PVLFLTAR +EVDR++GLE+GADDYV KPFSPRE+ ARVR +LRR Sbjct: 67 GTEICRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRR 126 Query: 122 VKKFSTPSPVIR---IGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 P V R +G L+ ++ P+ LT EF LL L+ PGRV++R + Sbjct: 127 --TVGVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGE 184 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L+ +VW A + RTVD H+ +RAKL I THRG+GY+ G Sbjct: 185 LLAAVWGYAAHSSTRTVDVHVAQVRAKL---GGAAGVIRTHRGVGYAADG 231 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 103/225 (45%), Positives = 137/225 (60%), Gaps = 5/225 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 R V LVEDE IAD + L ++GF V + G L AR+ P V +LD+ LP + Sbjct: 7 HRGLVLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLP 66 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR+L PV+FLTAR +EVDR++GLE+GADDYV KPFSPRE+ ARVR +LRR Sbjct: 67 GTEICRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRR 126 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 V P I +G L+ ++ P+ LT EF LL L+ PGRV++R++L+ Sbjct: 127 VAGPPPGRPRI-VGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLA 185 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW A RTVD H+ +RAKL P+ S I THRG+GY++ Sbjct: 186 GVWGYAVPAGTRTVDVHVAQVRAKL---GPE-SVIRTHRGVGYAV 226 >UniRef50_A6VZA5 Two component transcriptional regulator, winged helix family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZA5_MARMS Length = 226 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 141/219 (64%), Gaps = 3/219 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V ++EDE +A+ + L+Q G+ +RG ++ + D+++LD+ LP + G E+ Sbjct: 4 VLIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLMLPGLDGVEI 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C+Q+ +P++ +TA++EE+DRL+GLE+GADDYV KPFSPRE+ ARV+ LRRV+ Sbjct: 64 CKQVRQF-SGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVELD 122 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 SP R F+L+ + ++ + LT EF LL+ L+K PGRV+ R +M S++ Sbjct: 123 QAESP--RTDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIYA 180 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 D++ DRT+D+HIK LR K+ A+ P+L+ I++ G GY Sbjct: 181 DSRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGY 219 >UniRef50_Q9R609 Adaptive response regulator CREB (Fragment) n=44 Tax=cellular organisms RepID=Q9R609_ECOLX Length = 87 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/87 (100%), Positives = 87/87 (100%) Query: 12 EQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCRQLLA 71 EQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCRQLLA Sbjct: 1 EQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCRQLLA 60 Query: 72 LHPALPVLFLTARSEEVDRLLGLEIGA 98 LHPALPVLFLTARSEEVDRLLGLEIGA Sbjct: 61 LHPALPVLFLTARSEEVDRLLGLEIGA 87 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +W+VED + ++ L L+Q FAV+ RG ++ + R + PD+++LD+ LP Sbjct: 8 MINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGA 67 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G LCR++ A+P++ +TA+ EE+DRLLGLEIGADDYV KPFSPREV ARV+ +LR Sbjct: 68 DGVTLCREIRTFS-AVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLR 126 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + I IG L I+ L +T+ EF LL + PG+V+SR +L+ Sbjct: 127 RGGE-EPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDELI 185 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + YDR +D HIK LR KL A P L PI + G+GY Sbjct: 186 AKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKF 231 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 132/227 (58%), Gaps = 7/227 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE+ IA L L + G+ + G V+ + Q D+++LD+ LP G + Sbjct: 4 ILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLTI 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR++ + ++ +TAR +E+DRLLGLE+GADDY+ KPFSPREV ARV+T+LRR+ Sbjct: 64 CREIQEF-SNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINPP 122 Query: 126 STPSPVIRIGH------FELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 T I ELN Q + P+ LT EF LL L +PGR++SR QL Sbjct: 123 LTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRSQL 182 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +D V++D + +RT+D+HIK LR KL AI D + + +GY L Sbjct: 183 IDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKL 229 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 145/226 (64%), Gaps = 4/226 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+D++ I L L++EG++V G +DKAR+ PD+++LDV LP + G+ + Sbjct: 3 VLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWGV 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C+++ +P++ LTAR +E DR++GLE+GADDYV KPFSP+EV AR+R + RR++ Sbjct: 63 CKEIRRTSD-VPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 126 S---TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 S ++++G L++ + ++ TP+ LT E+ LL+ L PG+V+SR QL++ Sbjct: 122 SRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEK 181 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 V + A + Y+RTVD+HIK LR KL A + I T G+GY L G Sbjct: 182 VQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVG 227 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 139/225 (61%), Gaps = 13/225 (5%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE + L+ L+ +A + G VL R+ PD+++LD+ LP G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-- 123 CR++ +P++ +TA+ EE+DRLLGLEIGADDY+ KP+SPREV ARV+T+LRR K Sbjct: 73 CREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 Query: 124 ----KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + SP+I ++E Q SW L LT EF LLKTL PG+V+SR+QL Sbjct: 132 RELQQQDAESPLI------IDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 ++ +++D + DRT+D+HIK LR KL +++ + S I G+GY Sbjct: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 >UniRef50_D0LHP7 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHP7_HALO1 Length = 227 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 134/228 (58%), Gaps = 6/228 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + +DE I D + Y L+++G+ VE G L + D++ILDV +P++ Sbjct: 1 MNPARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPEL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G LCR+L +P++FL++RSEE DR+LGLE+G DDYV KPFSPRE+ RV+ +LR Sbjct: 61 DGLNLCRKLRE-RGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLR 119 Query: 121 RV---KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 RV + P + L+ A ++ D +ALT EF +L +L+ PGRV +R Sbjct: 120 RVAARRGADDAPPALVYERLTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRS 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 QL+D +ED +RT+DTHI+ +RAKLR + I T G+GY Sbjct: 180 QLIDRAYEDGLHVSERTIDTHIRRIRAKLRPYG--IEAIETVHGLGYK 225 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 138/224 (61%), Gaps = 7/224 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 ++++ED++ I + L Y ++EGF V F G + +++ PD+++LD+ +P++ G E Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 66 CRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 C+ + + +P++ LTA+S E+D+++GLE+GADDYV KPFS RE+ ARV+ LLRR K Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 124 K--FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 F T P + G +++ +++ P+ LT +F LL L+ S G+V SR +++ Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 VW +D YDRT+D HIK LR L+ + I T RG+GY Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYG---NCIKTIRGVGYK 224 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 100/228 (43%), Positives = 133/228 (58%), Gaps = 3/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q T+ LV+DEQ I D + Y L++ G+ V+ E G L +R + D+ +LD+ +P ++ Sbjct: 4 QPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMN 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+ELCR L A PVLFL+AR E+D+++GLEIGADDY+AKPF RE+ ARVR LLRR Sbjct: 64 GYELCRNLRTRTNA-PVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR 122 Query: 122 VKKFSTP--SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + P I G L+E + + LT EF LL L+K G+V SR+ L Sbjct: 123 GQMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDL 182 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + W T +TVDTHIK LR KL A D I T RG GY R Sbjct: 183 LREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFR 230 >UniRef50_B4U9Z2 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9Z2_HYDS0 Length = 229 Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 137/228 (60%), Gaps = 6/228 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ V++VED+ +A+ L + L+ EGF V+ F G + +P+++ILD+ LP Sbjct: 1 MDKDVVYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLPGY 60 Query: 61 SGFELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G + + L L+ +P++FLTA+SEE D++ G GADDY+ KPFS +E+ AR+R + Sbjct: 61 DGVRIAKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 L R KK T + +++ + EL+E +++ P+ LT+ EF +LK LL++ ++ +R + Sbjct: 121 LNRYKKTITTNK-LKVENLELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDK 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +++ +W D DRTVD HIK LR KL I T RG+GY Sbjct: 180 IINMLWSYGTDINDRTVDVHIKHLRDKLGDFG---KYIRTIRGVGYKF 224 >UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97MA9_CLOAB Length = 235 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 142/232 (61%), Gaps = 6/232 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFA-VEVFERGLPVLDKARKQVPDVMILDVGLPD 59 ++ + LV+DE+ I L +L++EGF+ V G+ + K R+ P+++ILD+ LPD Sbjct: 4 IEDSKILLVDDEESILKLLTTVLKKEGFSNVITSTNGMDGVKKCRENAPEIIILDIMLPD 63 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 I GFE+ RQ+ ++P++FL+A+SE+ D+++GL +GADDY+ KPFSP+EV RV+ L Sbjct: 64 IDGFEVFRQIRNF-SSVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSPKEVALRVKAHL 122 Query: 120 RRV----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 +R+ K + +I+ HF ++ +I D L E LLLK L+++ + S Sbjct: 123 KRIEMVKKSLTNRENIIKTEHFTIDFEKGEIIKNDKSTILRAKELLLLKYLVENKNIILS 182 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++++++VWED YD T+ HI+ LR KL + I T +G+GY L+ Sbjct: 183 KEKIVNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKLK 234 >UniRef50_C5B9J0 Transcriptional regulatory protein CreB n=2 Tax=Edwardsiella RepID=C5B9J0_EDWI9 Length = 227 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 +WL+ED AD L+Y L+ EGF V F P LD ++Q+P I+ + LPD SG L Sbjct: 5 IWLIEDRASTADPLIYTLETEGFNVCWFNHIQPALDALKQQIPQFAIIQLTLPDGSGLAL 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 R L A HP LP+LFL + E + + + PFS RE+C R+RTLL ++ Sbjct: 65 GRHLQAHHPTLPLLFLASTPGEAAQASDTALPHSAVILPPFSAREICVRMRTLLPHPERM 124 Query: 126 STPSPVIRI-GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + + + G+F LN+ + + L L E+LLLKTLL+ G+V+SR QL D + Sbjct: 125 GSKATRLECYGNFTLNDSRSCAHYVGHALQLNHCEYLLLKTLLQGRGKVFSRSQLNDLLR 184 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + +R+++ HIKTLRAKL+ I P P+NTH G+G+S+ Sbjct: 185 PLNEKGGERSIEHHIKTLRAKLQRITPHDIPLNTHHGIGFSV 226 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E V +VEDE IA+ L L +EG+ V + +RG V+ + Q +++LD+ LP + Sbjct: 1 MSNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G +CR++ +P++ +TA+ EEVDR++G E+G DDY+ KPFSPREV ARV +LR Sbjct: 61 DGKTVCREVRKFSD-VPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLR 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R K S+ V+ +G +LN+ + L+LT EF + LL+SP RV++R QL+ Sbjct: 120 RTFKKSS-DDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLI 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + V D Y+RT+D HIK LR K+ P I + G GY + Sbjct: 179 EKVQGYNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKI 224 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 131/224 (58%), Gaps = 5/224 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE I D + + L++ G G + R+ D++ILD+G+PD+ G ++ Sbjct: 5 ILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMDGLDV 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CRQ+ LP+LFL+AR EE+D++LGLEIG DDYV KPFSPRE+ ARV+ +L+R Sbjct: 65 CRQIRKTS-GLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSGNE 123 Query: 126 STPS---PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + P + G L+ + + D+ +++T EF +L LL P V+SR++LM++ Sbjct: 124 AEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSRERLMEA 183 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + DRT+D+HI+ +RAK A I T G+G+ L Sbjct: 184 AYGAGTYVADRTIDSHIRNIRAKFLAAGGQ-GIIATVHGIGFKL 226 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 137/221 (61%), Gaps = 2/221 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVEDE+ I D L L+QEGF V + GL L + PD+++LD+ LP +SG+E+ Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 +++ + P++ LTAR +EVD+LLGLE+GADDY+ KPFSPRE+ R++ +LRR + Sbjct: 65 MKKIRQKNNT-PIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPH 123 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + V I + +N + DT LALT EF +L L ++PG+V+SR +++ V+ Sbjct: 124 EQVTNV-SISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFG 182 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D + Y+RT+DTHI LR K+ A I T G+GY L Sbjct: 183 DIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 136/224 (60%), Gaps = 3/224 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 ++TV++VED+ IA + Y L+ GFAV F G V+ ++ K P++ +LD+ +P G Sbjct: 2 KQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADG 61 Query: 63 FELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 E+CRQ+ PV+FLTA++ E D++ GL++GADDY+AKPFSPRE+ AR++ +LR Sbjct: 62 LEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLR 121 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R ++ P V+ G ++ A ++ + T EF LL+ L + PGRV++R QL+ Sbjct: 122 RFER-PLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 D+VW + R+VD +++ +R K+ D + T RG GY Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGY 224 >UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DY83_EIKCO Length = 226 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 141/226 (62%), Gaps = 12/226 (5%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVP----DVMILDVGLPDIS 61 + ++EDE+ IA+ + L + F + P ++AR+ + D+++LDVGLPD Sbjct: 5 ILIIEDEREIAELVELSLARAHFTARI----APTAEQARQLLAREHFDLLLLDVGLPDTD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFEL + L HP PV+ LTA+ EE DR+LGLE+GADDY+ KPFSPRE+ ARV+ +LRR Sbjct: 61 GFELLKTLRPQHPQ-PVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRR 119 Query: 122 VK-KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + + + + + + H ++ PA I L LT+ E+ LL+TLL PGRV+SR++L+ Sbjct: 120 TQTRPAAKTESVPVWHDDV--PACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELL 177 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +++ + + T++THI+ LR KLRA I TH G+GYS Sbjct: 178 TAMFGGNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSF 223 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 135/229 (58%), Gaps = 7/229 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQR + +V+DE + D + ++EGFAV G L + R + D++ILD+GLP I Sbjct: 1 MQR--ILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGI 58 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GF + RQ+ A PV+ LTAR++EVDR++GLE+GADDYV KPFSPRE+ ARVR LLR Sbjct: 59 DGFGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLR 118 Query: 121 RVKKFSTPSPVI-----RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + S I +L+ + ++ D L L EF LL L PG+V++ Sbjct: 119 RTAEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFT 178 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 R+ L+ VW + RTVD HI+ LR+KL I+ + + I T G+GY Sbjct: 179 REVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGY 227 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 138/224 (61%), Gaps = 6/224 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVED+ I + + Y L++EG+ V + E G L+ K+ PD+++LDV LP++ G ++ Sbjct: 4 ILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLDV 63 Query: 66 CRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 C+++ +P++ L+AR E DR++GLE+GADDY+ KPFSPRE+ AR++ LR + Sbjct: 64 CKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREER 123 Query: 124 KFSTPSPV-IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + STP P+ + G E+ + ++ + LT EF LL +K P +V+SR+ L+ Sbjct: 124 RNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQK 183 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW RTVD HI LR+KL++++P I + RG+GY L Sbjct: 184 VWGYTVSGDTRTVDVHISNLRSKLKSVSP---IIESVRGVGYRL 224 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 136/226 (60%), Gaps = 7/226 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 E + LV+DE+ I D + Y L++EG+ VE G LDK P +++LD+ LP I+G Sbjct: 2 NEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVING 61 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +++C++L + ++ LTA+ + VD++LGLE+GADDY+ KPF RE+ AR+++L+RR+ Sbjct: 62 YDVCKRLEG--KNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRRL 119 Query: 123 KKF---STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 K S VI IG +N+ +S ++ L T EF LL LL + G V+SR+Q+ Sbjct: 120 DKTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQI 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 ++ +W RTVDTHI+ +R KL DL I T G+GY Sbjct: 180 LNIIWNMDYAGGTRTVDTHIQRIRKKLGNNYQDL--IQTVYGIGYK 223 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/226 (44%), Positives = 136/226 (60%), Gaps = 10/226 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE+ ++ L Y L+ EGF V+ RG + ++++PD++ILD LP +SG EL Sbjct: 5 IAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIEL 64 Query: 66 CRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 CR+L LP++ LTAR EE +R+ GL GADDYV KPFS E+ ARV+ +LRR K Sbjct: 65 CRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRAK 124 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 S ++R G EL+ ++ + L EF LL+ L+ SPGRV+SR QL+D V Sbjct: 125 P-EVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183 Query: 184 WEDAQDTY--DRTVDTHIKTLRAKLRAIN-PDLSPINTHRGMGYSL 226 W D Y +RTVD H+ LR L N PD+ I T RG GYSL Sbjct: 184 W--GHDIYVDERTVDVHVGRLRKALNFSNMPDV--IRTVRGAGYSL 225 >UniRef50_B4RCQ3 Response regulator n=3 Tax=Alphaproteobacteria RepID=B4RCQ3_PHEZH Length = 251 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 138/224 (61%), Gaps = 6/224 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+D+ I + LV+ L++ + V E G L +Q PD++ILD+ +P + G E+ Sbjct: 23 VLVVDDDPHIRELLVFALEKARLSARVAEDGEAALAAVAEQAPDLVILDINMPRLDGLEV 82 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L A LP+LFL++R +E+DR+LG+E+G DDYV KPFSPREV ARV+ +LRRV+ Sbjct: 83 CRRLRA-QGDLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAILRRVRGR 141 Query: 126 STPS--PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + P V+R G L+ A W + LT EF +L+ L+ +P RV+SR ++D + Sbjct: 142 AEPRGPGVLRHGRLSLDPEAWTARWDEVEAPLTVTEFQILRVLMGAPARVFSRDAIIDRL 201 Query: 184 WEDAQDTYDRTVDTHIKTLRAKL-RAINPDLSPINTHRGMGYSL 226 DRT+D+HI+ LRAK RA D+ + T G+GY L Sbjct: 202 HGPGFAITDRTIDSHIRNLRAKFARAGGHDV--VETRAGVGYRL 243 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 132/225 (58%), Gaps = 8/225 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +VEDE +A L Y L++EG++V V G L +A + PD++++D LP +SG E+ Sbjct: 5 VLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIEV 64 Query: 66 CRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 CR+L +P++ LTAR EE DR+ GL+ GADDYV KPFS E+ AR+R +LRR++ Sbjct: 65 CRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRIR 124 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 VI G ++ A ++ D + L EF LL L++ PGRV+SR+QL+D+V Sbjct: 125 P-GLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183 Query: 184 WEDAQDTY--DRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W D Y RTVD H+ LR L + PI T R GY+ Sbjct: 184 W--GSDVYVEARTVDVHVGRLRKALNN-KEERDPIRTVRSAGYAF 225 >UniRef50_B8JG70 Two component transcriptional regulator, winged helix family n=2 Tax=Cystobacterineae RepID=B8JG70_ANAD2 Length = 238 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 99/226 (43%), Positives = 132/226 (58%), Gaps = 2/226 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +R V VED++ +A L+ G AV G L +A K DV+ILD+ LP S Sbjct: 7 ERFRVLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLPRKS 66 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR+L A P +P++ LTA EE DR+LGLE GADDY+AKPFS RE+ AR+R L+RR Sbjct: 67 GLEVCRELRARLP-VPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRR 125 Query: 122 VK-KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + P VIR+G EL+ S PL LT EF+LL+ L + GRV +R+QL+ Sbjct: 126 GRGSLGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTREQLL 185 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D A + +DR++D HI LR KL + + T RG GY L Sbjct: 186 DLTKGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVL 231 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 134/233 (57%), Gaps = 9/233 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 ++ +V+DE I + LV L GF V G ++ K PD+++LDV LPDI GF Sbjct: 13 SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFT 72 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R++ A PVL+LTAR + D+++GL +G DDYV KPFS EV AR+R +LRR ++ Sbjct: 73 VTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQE 132 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 P+IR+G E+NE + +S P+ L+ E+ LL+ L+ + GRV S+ Q++D VW Sbjct: 133 QVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 192 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAI--------NPDLSP-INTHRGMGYSLRG 228 + V+++I LR K+ I ++P I T RG+GY +R Sbjct: 193 QYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRA 245 >UniRef50_A6G8V6 DNA-binding response regulator n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8V6_9DELT Length = 289 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/250 (38%), Positives = 138/250 (55%), Gaps = 32/250 (12%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLD-----KARKQVPDVMILDVGLPDISG 62 LV+D+ + + + Y L++EG+AV G LD + D++++DV +P+I G Sbjct: 38 LVDDDPKLREVVGYALEREGYAVTQARNGAEALDLLEATGSSSADFDLLVVDVSMPEIDG 97 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F+L R+L PVLFL+ARS+E+DR+LGLE+G DDYV KPFS RE+ RV+ LLRRV Sbjct: 98 FDLVRRLRLRDADTPVLFLSARSDEIDRILGLELGGDDYVTKPFSTRELATRVKVLLRRV 157 Query: 123 KK-----------FSTPSPV--------------IRIGHFELNEPAAQISWFDTPLALTR 157 + T SP +R G L A + W +ALT Sbjct: 158 GRQRRLDPASASHSGTQSPAASADAEASTDLGEELRAGPLRLLPEAHRSFWAGREVALTA 217 Query: 158 YEFLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPIN 217 EF LL+ L++ PGRV+SR +L + DA+ RT+D+H++ +RAK R D PI Sbjct: 218 TEFRLLEVLIRRPGRVYSRDELGRQAYPDARHVSGRTLDSHVRRIRAKFRVHEVD--PIE 275 Query: 218 THRGMGYSLR 227 T G+GY LR Sbjct: 276 TVHGVGYRLR 285 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 139/223 (62%), Gaps = 3/223 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T++++ED+ IA + + LQ G+A+ ++ +L A +Q P + +LD+ +P G Sbjct: 3 QTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGL 62 Query: 64 ELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 ++CR+L A ++P++F+TAR+ E DR+LGLE+GADDY+ KPF+PRE+ ARV+ +LRR Sbjct: 63 DVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRR 122 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 ++ STPS +I ++ A Q+ T EF LL L + PGRV+SR L+D Sbjct: 123 FERPSTPS-LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLD 181 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 +VW DA+ R+VD +++ +R K+ + + + T RG GY Sbjct: 182 AVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGY 224 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 143/225 (63%), Gaps = 3/225 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 E +++++D++ I D +V +++EG+ V+ F+ VL+ K PD++ILD+ +P + G+ Sbjct: 3 ELIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMDGY 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ELC+++ + +P++ ++AR E++D++LGLE+G+DDY+AKPFSPRE+ AR++++ RRV Sbjct: 63 ELCKEIRKISD-VPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRV- 120 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 K S IRI + ++ + ++ T EF L++ L K+ + ++R+QL++ V Sbjct: 121 KMPKRSNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLLEKV 180 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 W+ T R VD +K +R KL++ + + I+T G GY + Sbjct: 181 WKYDSFTETRAVDDMVKRVRKKLQSYGCEFN-ISTIWGYGYKVES 224 >UniRef50_A8LCN3 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A8LCN3_FRASN Length = 259 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/246 (42%), Positives = 133/246 (54%), Gaps = 28/246 (11%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 E V +VEDE IA+ + L +EGFAVEV G L AR P +ILDV LP + G Sbjct: 15 ELVLVVEDEAHIAELIRMYLVREGFAVEVRADGPAGLAAARALTPVAVILDVRLPGLDGR 74 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 EL R L A +PVL +TAR +EVDR++GLE+GADDYV KPFSPRE+ AR+R +LRR Sbjct: 75 ELLRALRADGDWVPVLLVTARDDEVDRVVGLELGADDYVTKPFSPRELVARLRAVLRRTS 134 Query: 124 K------------------------FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYE 159 + PV+R G L+ ++ D + LT E Sbjct: 135 GPAALARSTDAAGAPAGPGAGAGPDANAGGPVLRAGVVVLDVGRRRVLAGDREVTLTTTE 194 Query: 160 FLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTH 219 F LL LL+ PG V +R +L+ VW RTVD H+ +RAKL P SPI T Sbjct: 195 FDLLAALLRRPGLVHTRDRLLADVWGYQASAGTRTVDVHVAQVRAKL---GP-ASPIRTV 250 Query: 220 RGMGYS 225 RG+GY+ Sbjct: 251 RGVGYT 256 >UniRef50_D1KBY7 Putative uncharacterized protein n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KBY7_9GAMM Length = 231 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 140/228 (61%), Gaps = 7/228 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ LVED++ IA+++ + L+ + F V E G LD D+++LD+GLPDISGF+ Sbjct: 3 TILLVEDDKVIAESISFALESDSFKVNWREMGNDALDYLNNNTVDLVLLDIGLPDISGFD 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLE-IGADDYVAKPFSPREVCARVRTLLRRVK 123 + R++ + +P++ +TAR + D +LGLE +GADDYV KPF+PR + AR+R LRR Sbjct: 63 VLRKI-RIDSEIPIIIITARDADADIVLGLEGLGADDYVTKPFNPRVLVARIRAQLRRAN 121 Query: 124 KFST--PSPVIRIGH---FELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 K ++ P + F +NE QI D + LT+ E +L L+++P R+ S++Q Sbjct: 122 KQTSIAKEPTAKSKSKQVFTINEDMNQILLHDQVIDLTKAECKILLHLVRNPNRIHSKEQ 181 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L++ +++ + D T+ THIK +R L I+PD I HRG+GYSL Sbjct: 182 LLNVMYDRPTGSSDSTIVTHIKLIRKSLNKIDPDNEYIENHRGLGYSL 229 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 144/229 (62%), Gaps = 13/229 (5%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE I + L + L++ G+ VE+ G L +A + D+++LD+ LP++ G E+ Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPE--ADLVLLDIMLPEVDGLEV 60 Query: 66 CRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR-- 121 CRQL A +P++ LTA++EE+DR+LGLE+GADDYV KPFS RE+ ARV+ +LRR Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 122 -VKKFSTPSP----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 V+K S + + IG L+ + Q D +ALT E+ LLK L+ +PGR +SR Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLS-PINTHRGMGY 224 +L++ +W RTVD HI+ LRAKL+ +P +S I T RG+GY Sbjct: 181 DELLERIWGYEYYGDTRTVDVHIRHLRAKLKD-DPTVSDAIETVRGVGY 228 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 7/222 (3%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 +V+DE+GI L L+ G+ V G L + PD+++LDV LPD+ GFE+CR Sbjct: 31 VVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFEVCR 90 Query: 68 QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFST 127 L A+PVLFLT DR+ GL++G DD+V KPF +EV ARVR LLRR Sbjct: 91 TLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRR-SGGGR 149 Query: 128 PSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 P+P +R G +L+ A Q+ D P+ LT EF LL+ L+++PGRV SR Q+ + VW Sbjct: 150 PAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQERVW 209 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + +D VDT+I LR KL P S I T RG+GY L Sbjct: 210 -NHRDEGSGVVDTYIYYLRRKLG--EPGQSLIRTVRGVGYQL 248 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 137/233 (58%), Gaps = 17/233 (7%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T +VEDE IAD + L+ EG+ VE G ++ + PDV++LDV LP G E Sbjct: 19 TAVVVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLE 78 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ A P +PVL LTAR +E D+L+GL +GADDY+ KPFS RE+ ARV L+RRV++ Sbjct: 79 VCRRVQAARP-VPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVER 137 Query: 125 ----FSTPSPV-------IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 P+P + G E++ ++ T + LT EF LL L +SP V Sbjct: 138 ARALVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTV 197 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +R++L++ VW+ A + RTVD+H+K LR KL A DL + T G+GY+ Sbjct: 198 LTREKLLEEVWDWADASGTRTVDSHVKALRRKLGA---DL--VRTVHGVGYAF 245 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 140/230 (60%), Gaps = 15/230 (6%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + + L+ED+ + L Y L++EGF++ G ++ R+ PD+++LD+ LPD G Sbjct: 7 KKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGL 66 Query: 64 ELCRQL-----LALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 ++C+ + LA A+PV+FLTAR+ E DR++GLE+GA+DYV KPF RE+ AR++ Sbjct: 67 DICKGIRKDPDLA---AIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQ 123 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 R +TP+ ++ G EL+ + Q+ PLALT EF LL+ L+ PG V+SR+Q Sbjct: 124 FRNQ---ATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQ 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTH--RGMGYSL 226 L+++VW + DR VD ++ LR K+ +P SPI H RG GY+ Sbjct: 181 LLNAVWGQDRAITDRAVDVYVLRLRQKVEK-DP-ASPILIHSVRGFGYTF 228 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 132/231 (57%), Gaps = 9/231 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGF----AVEVFERGLPVLDKARKQVPDVMILDVG 56 M++ + +V+DEQ + + L++EGF + G V + R P + ILDV Sbjct: 1 MEQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFR---PHLAILDVM 57 Query: 57 LPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVR 116 LPD G++LC+Q+ A +P+LFL+A+SEEVD+LLGL IG DDY+ KPFSP+EV RV+ Sbjct: 58 LPDGEGYQLCQQMRA-QSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVK 116 Query: 117 TLLRRVKKFSTP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 LRRV P + +G F++NE ++ L LT E LL L++P R+ S Sbjct: 117 AQLRRVSMMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILS 176 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++ L VW ++ D TV HI+ LR K+ + + I T +G+GY L Sbjct: 177 KETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 141/228 (61%), Gaps = 15/228 (6%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + V +V+DE+ IA+ + + L++ G+ V+ + GL VL K K PD++ILD+ LP I G Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +LC+++ + ++P++ +TA+S E + +LGLE+GADDYV KPFS RE+ ARVR++LRR K Sbjct: 70 DLCKKIKEKY-SMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTK 128 Query: 124 KFSTPSPV---IRIGHFELNEPA--AQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + I IG+ LN A A I+ F+ L L Y+ L L + +PG ++R + Sbjct: 129 EGEEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNL--FMTNPGVAFTRDK 186 Query: 179 LMDSVWEDAQDTY--DRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 L+D VW +D Y DR VD +IK LR KL + + T RG+GY Sbjct: 187 LLDRVW--GKDIYVTDRAVDVNIKRLRDKL---GDEKERLETIRGIGY 229 >UniRef50_Q6MA20 Putative two-component response regulator phoP n=2 Tax=Parachlamydiaceae RepID=Q6MA20_PARUW Length = 229 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 137/230 (59%), Gaps = 7/230 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQ+ + L+EDE+ IA + + G+ V + GL ++ PDV+ILD+ LP + Sbjct: 1 MQKTKILLIEDEEDIASLIKLQAELAGYKVHLEMDGLNGFLAIEREKPDVIILDIMLPGL 60 Query: 61 SGFELCRQLLALHPAL---PVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 +G ++CR++ + +P L P++ ++A+SEE+D +LGLE+GADDYVAKPFS + + +R++ Sbjct: 61 NGLDVCRKIKS-NPDLENIPIIIISAKSEELDVVLGLELGADDYVAKPFSLKVLFSRIKA 119 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 ++RR K+ + + G + + + D +ALT EF +L+ LL + G+V +R Sbjct: 120 VMRRGKEGEKEAKTLVFGEYTMEVDRYLLRKKDKSIALTLSEFGILRRLLLNRGKVLTRN 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL+D V D DR +D HI +LR KL P+ I T RG+GY + Sbjct: 180 QLLDDVQNDEAFIIDRNIDVHIASLRKKL---GPNFDGIETVRGVGYRFK 226 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 15/232 (6%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 TV++VEDE I + L L++ G+ VE + G L K R+ PD +ILD+ LPD+ G E Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C+Q+ L +P++ L+A+S E DR+ G+ IGADDYV KPFSPREV R+ +LRR + Sbjct: 64 ICKQI-RLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRT 122 Query: 125 FSTPSPVIRIGHFELNEPAAQISWF-------DTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + ++ F N+ I + + ++LT EF ++ + K PGRV+SR Sbjct: 123 LN------KMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRA 176 Query: 178 QLMDSVWEDA-QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L+ + ED+ + Y+R++D HIK LR KL I T GMGY G Sbjct: 177 DLLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGG 228 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 132/229 (57%), Gaps = 8/229 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDK-ARKQVPDVMILDVGLPDIS 61 ++T+ LVEDE +A + Y LQ+EG+ V G L++ AR+ PD ++LD+ LPDIS Sbjct: 10 QKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDIS 69 Query: 62 GFELCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G E+C+ L +PV+ +TA+ E+DR++G E+GADDYV KPFS RE+ R+R LL Sbjct: 70 GTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALL 129 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFD-TPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 RR ++ + +I ++ ++ W D ++LT EF LL + GRV +R Sbjct: 130 RRTERPADNPDMITFDRLRVDREGHRV-WVDEQEISLTALEFRLLYAFISRRGRVQTRDA 188 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+ VW D RTVDTH+K LR KL + T RG+GY R Sbjct: 189 LLSDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFR 234 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 136/227 (59%), Gaps = 4/227 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 +V +VEDE+ +AD L ++L++EGF V G L + + D+++LD+ LP +SG + Sbjct: 3 SVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTD 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR--- 121 +C+QL A ++PV+ +TAR E+D+++GLE+GADDYV KP+S RE+ AR+R +LRR Sbjct: 63 VCKQLRA-RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAD 121 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 V+ G ++ +S P+ L EF LL+ L+++ GRV +R QL+D Sbjct: 122 NDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLID 181 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 VW +T+D H+K LR+K+ + + T RG+GY L G Sbjct: 182 RVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE + D LV LQ+E + G LD ++ +++LDV +P++ G Sbjct: 8 ILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLTA 67 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C ++ +P++ LTARS+E+DR+ GL+IGADDY+ KPFSPRE+ AR+ LRR +F Sbjct: 68 CMRIREF-SNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 126 ST-PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + S + IG EL+ + + P++LTR EF LL +++ +V+SR+QL+D +W Sbjct: 127 TVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQIW 186 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 RTVDTHIKTLR KL I T G+GY Sbjct: 187 GADYIGNLRTVDTHIKTLRLKLGEAG---GSIQTVWGIGYKF 225 >UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostridium RepID=A7GA24_CLOBL Length = 225 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 132/222 (59%), Gaps = 2/222 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +ET+ +++DE I + + L+ EG+ V G+ L K + PD++ILD+ LPDISG Sbjct: 2 KETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDISG 61 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +C ++ +P++ LTA+S E L G IG+DDY+ KPFSP+++ A+V +L+RV Sbjct: 62 ENVCERIRK-ESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRV 120 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 K + + ++ ++ + + + LT E+ +L L ++P +++SR++LMD Sbjct: 121 KGNQCENLIFN-NELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDY 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + D YDR +DTHIK +RAKL + + + I T RGMGY Sbjct: 180 ISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGY 221 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 7/226 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 TV ++EDEQG+ L L++EG+ V GL L+ +KQ PD+++LD+ LP++SG E Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R++ P+L LTA+ E +++ GL IGADDYV KP SPRE+ AR++T+LRRV K Sbjct: 69 IARKIRK-EQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGK 127 Query: 125 --FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 +I G ++ A +I T ++LT+ EF +L TL P +V+SR+ L D Sbjct: 128 EPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADR 187 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSP--INTHRGMGYSL 226 ++ + RT+DTHIK LR K+ NP P I T G GY Sbjct: 188 IYGYLWEGDSRTIDTHIKNLRRKIEQ-NPK-KPIFIKTVFGAGYQF 231 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 130/220 (59%), Gaps = 1/220 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ +V+DE + D L L+QEGF V G L AR + PD+++LD+ +P++ G+E Sbjct: 3 TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYE 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 R A PV+ LTA+ E+ D++LGLE+GADDYV KPF+ RE+ AR+R +LRR ++ Sbjct: 63 FLRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+R L+ + + LT EF +L TL+ +PG+V+SR L+D V Sbjct: 122 TPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 DA + +RT+D HI+ LRAK+ A I T GMGY Sbjct: 182 GDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGY 221 >UniRef50_B2V706 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=B2V706_SULSY Length = 224 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK-QVPDVMILDVGLPDISGF 63 V ++ED++ +A+ L L + +V+ FE L++ +K Q D+MILD+ LP+I G Sbjct: 3 NVIMIEDDKELAELLTQYLAKFNISVKNFEHSKKALEELKKNQSYDLMILDLTLPEIDGI 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ++C+ +LA +P++ +ARS++ D++L LEIGADDY+AKP++PRE+ AR++ +LRR Sbjct: 63 DICK-MLAKEGNIPIIISSARSDDTDKILALEIGADDYLAKPYNPRELVARIQAVLRR-- 119 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 K VI+ G FEL+E I PL LT E+ LL L+K+ GRV +R ++D+ Sbjct: 120 KNKAVEKVIKCGEFELDEEGYIIKKNGEPLNLTSAEYELLSMLIKNKGRVLTRDYILDNS 179 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D+ DRTVD I +R K+ + I + RG GY Sbjct: 180 IYLNYDSIDRTVDVIIGRIRKKIGDDPKNPKYIISVRGFGYKF 222 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 137/226 (60%), Gaps = 3/226 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 +V +VEDE+ +AD L ++L++EGF V G L + + D+++LD+ LP +SG + Sbjct: 3 SVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTD 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C+QL A ++PV+ +TAR E+D+++GLE+GADDYV KP+S RE+ AR+R +LRR Sbjct: 63 VCKQLRA-RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGD 121 Query: 125 FST--PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + V+ G ++ +S + L EF LL+ L+++ GRV +R QL+D Sbjct: 122 DDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 181 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 VW +T+D H+K LR+K+ A + + T RG+GY L G Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_B0SW50 Two component transcriptional regulator, winged helix family n=12 Tax=Proteobacteria RepID=B0SW50_CAUSK Length = 243 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 136/230 (59%), Gaps = 7/230 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQR T+ +V+D+ I LV+ L + G G L ++ PD+++LD+ +P + Sbjct: 4 MQR-TILIVDDDPHIRQLLVFALAKVGLETREAADGEAALAAVAERAPDLVVLDINMPRL 62 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+CR+L A LP+LFL++R +E+DR+LG+E+GADDYV KPFSPREV ARV+ +LR Sbjct: 63 DGLEVCRRLRA-QGDLPILFLSSRDDEIDRVLGIELGADDYVVKPFSPREVVARVQAILR 121 Query: 121 RV-KKFSTPSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 R K +P +I G L+ A W + ++LT EF +LKTL +P +V+SR Sbjct: 122 RTGAKAGEAAPADGLIVRGRLTLDPEAWSARWAEAEVSLTVTEFTILKTLAATPTKVFSR 181 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++D + DRT+D+H++ LRAK + I T G+GY L Sbjct: 182 DAIIDRLRGPGFAVTDRTIDSHVRNLRAKFAGVGGH-DVIETRAGIGYRL 230 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 132/230 (57%), Gaps = 9/230 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED+Q IA + L++E F V G L ++QVPD+++LD+ LP + G E Sbjct: 13 NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72 Query: 65 LCRQLLALHPALP---VLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 +C ++ P +L LTA+ EE+DR++GL GADDY+ KPFSPRE+ ARVR LLRR Sbjct: 73 VCTRIRQ-QPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131 Query: 122 VKKFSTP-SPVIRIGHFELNEPAAQISWF----DTPLALTRYEFLLLKTLLKSPGRVWSR 176 + P + R HF+++ Q S + L LT EF LL T + PGRVW+R Sbjct: 132 QLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNR 191 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 QL++ +W + +R VDTHI+ LR K+ + + I T G+GY Sbjct: 192 TQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_Q1IY67 Two component transcriptional regulator, winged helix family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IY67_DEIGD Length = 227 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 6/223 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE +A+ L +QEG+ E GL L R PD+++LDV LP SG ++ Sbjct: 5 ILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVMLPGRSGLDV 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 + + A P PV+ +TAR+EE D+++GLE+GADDYV KPF PREV ARV+ +LRR Sbjct: 65 LKTVRADGPT-PVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVLRRAHAA 123 Query: 126 --STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 T P +R+G E++ AA+ PL LT EF LL L + PGR +R++L+ + Sbjct: 124 LEGTERP-LRVGPLEVDRRAARARVNGQPLGLTPAEFRLLAYLAQVPGRACTREELLAAA 182 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D+ D +R VD H+ ++R KL A ++T RG+GY L Sbjct: 183 LPDS-DALERVVDAHLASVRRKLDAAQAG-ELLHTVRGVGYRL 223 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 132/228 (57%), Gaps = 9/228 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DEQ + + + + L++ G+ V + G L+ AR + PD+++LD+ +P + G+ Sbjct: 3 NILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGYS 62 Query: 65 LCRQLLALHPA---LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 +CR LL PA +P++ L+ARS+E+D++LGLE+GADDY+ KPFSPRE+ ARV LRR Sbjct: 63 ICR-LLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRR 121 Query: 122 VKK--FSTP---SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 KK F P +I G +++ I L EF LL L PG+ +SR Sbjct: 122 DKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSR 181 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 L+ WE RTVD HI+ +R KL +N + I T RG+GY Sbjct: 182 YFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGY 229 >UniRef50_A7HMZ4 Two component transcriptional regulator, winged helix family n=7 Tax=Thermotogaceae RepID=A7HMZ4_FERNB Length = 229 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 10/222 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +VEDE+ IA+ L +L+ +GF +V + K K +V++LD+ LPD + Sbjct: 3 VLIVEDERIIAENLQKLLKSDGFESDVANGINDMYRKLEKNTYEVILLDLMLPDGNAINE 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 + L P + ++ ++A+S ++D++LG+E+GADDYV KPF+PREV ARV+ LRR K Sbjct: 63 IQTLKNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTKGI 122 Query: 126 STPSPVIRIGHFELNEPAAQISWFD-TPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 VIR G E+ P+ + +D + LT EF +LK L + P RV+SR+++++++W Sbjct: 123 ---KEVIRYGKLEIY-PSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEILETIW 178 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D D +DR VD HI +LR KL I T RG+GY Sbjct: 179 TDEYDVFDRVVDVHINSLRKKLGK-----DWIITVRGVGYKF 215 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 131/231 (56%), Gaps = 10/231 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK---------QVPDVMILDVG 56 + +VEDE I D + +LQQEGF V+V G L+ R + PD+++LD+ Sbjct: 26 ILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLM 85 Query: 57 LPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVR 116 LP ++G + CR L +P+L L+A+ E DR++GLEIGADDY+ KPF RE+ AR R Sbjct: 86 LPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARCR 145 Query: 117 TLLRRVKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 LLRR + +P V+R +L ++ D L L+ EF LL+ ++ P RVWS Sbjct: 146 ALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVWS 205 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R QL++ +W +T+D HI+ LR K+ A + S + T RG GY L Sbjct: 206 RDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B9MF92 Two component transcriptional regulator, winged helix family n=4 Tax=Comamonadaceae RepID=B9MF92_DIAST Length = 242 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 95/210 (45%), Positives = 126/210 (60%), Gaps = 5/210 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDK-ARKQVPDVMILDVGLPDISGFE 64 + +VEDEQ IAD L+ L+ G+A E G L Q PD+ +LDV LP I G E Sbjct: 7 ILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDGLE 66 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR--V 122 + RQ H P++ +TAR EEVDRL+GLE+GADDY+ KPFSPREV ARV+ +LRR Sbjct: 67 VLRQARR-HTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRRAP 125 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + G L+E Q + T +ALT E+ LL+TLL P V SR QL+ Sbjct: 126 LAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQLLQH 185 Query: 183 VWEDA-QDTYDRTVDTHIKTLRAKLRAINP 211 + D+ Q+ +R VD+HIK LR KLR+ +P Sbjct: 186 AYPDSPQEPNERAVDSHIKNLRRKLRSADP 215 >UniRef50_A8UXR4 Two component transcriptional regulator, winged helix family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UXR4_9AQUI Length = 225 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 126/220 (57%), Gaps = 3/220 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VED+ IAD L L++EGF G + PDV+ILD+ LPD GFEL Sbjct: 5 ILIVEDDPLIADMLKRYLEKEGFKTYWDSTGAEAVKSFETLKPDVVILDLMLPDTDGFEL 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C+ + L L LTAR + D+++GLE+GADDY+ KPF+ RE+ ARV+ LLRR KK Sbjct: 65 CKLFSSTDSML--LILTARDADEDKIVGLELGADDYITKPFNMRELLARVKALLRRRKKL 122 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S +R+G E++ ++ + LT EFL+LK LL G+V SR++++ ++ Sbjct: 123 SLSGETLRVGELEIHTGEMKVLLKGRLVDLTPKEFLILKKLLSKRGKVVSREEIVSEIYS 182 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSP-INTHRGMGY 224 Y+R VDT+I +R KL I + I T RG GY Sbjct: 183 GDIPYYERIVDTYIYRIRTKLMEIERSYAERIKTVRGFGY 222 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 129/221 (58%), Gaps = 1/221 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ +++DE + + L LQ EGF V + G L AR PD+++LD+ +P++ G Sbjct: 3 QTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGL 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 + R P++ LTA+ E+ D+++GLE+GADDY+ KPF+ REV ARVR +LRR Sbjct: 63 DFMRAW-NKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSY 121 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 K + V+RIG L A + + + LT EF +L TL+ SPG V+SR L+D Sbjct: 122 KAQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRT 181 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 A + Y+RT+D HI+ LR+K+ + I T G+GY Sbjct: 182 SGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGY 222 >UniRef50_C4GKG1 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GKG1_9NEIS Length = 235 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/193 (41%), Positives = 124/193 (64%), Gaps = 10/193 (5%) Query: 45 KQVPDVMILDVGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAK 104 ++ D+++LDVGLPDI+GF+ + L HP+LPV+ LTA+ EE DR+LGLE+GADDY+ K Sbjct: 43 REAYDLLLLDVGLPDINGFDYLKTLRHQHPSLPVIMLTAQDEETDRILGLELGADDYIGK 102 Query: 105 PFSPREVCARVRTLLRRVKK-------FSTPSP---VIRIGHFELNEPAAQISWFDTPLA 154 PFSPRE+ AR++ LLRR ++ + P+P + ++ + A I L Sbjct: 103 PFSPRELNARIKALLRRTQRQPENECSQNEPNPNPPQAQWQQWQDDTQAHCIRHQGQALP 162 Query: 155 LTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLS 214 LT E+ LL+TL+ P RV++R++L+ +++ + T++THI+ LR KLR D + Sbjct: 163 LTLGEYRLLRTLIAHPQRVYTREELLTAMFGSNHPSDPHTINTHIRALRQKLRNAQIDPA 222 Query: 215 PINTHRGMGYSLR 227 I+TH G+GYS + Sbjct: 223 CIHTHHGIGYSFQ 235 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 132/220 (60%), Gaps = 2/220 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVEDE+ I D + L++E + V G L++ K D++ILD+ LP + G + Sbjct: 11 ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGERV 70 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR + + +P++ LTA+ E DR++GLE+GADDY+ KPFSPRE+ ARVR LLRRV Sbjct: 71 CRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHAD 129 Query: 126 STPS-PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S P V+ G ++ ++ + LT EF LL TL + PGRV+SR +L++ V Sbjct: 130 SEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKVL 189 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + Y+RT+D+H+K LRAK+ + ++T G+GY Sbjct: 190 GYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGY 229 >UniRef50_Q9KAM3 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9KAM3_BACHD Length = 231 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 2/220 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+DE+ + + + + G+ V+ GL +D+ + + D+++LD+ LPD+ GF L Sbjct: 5 VLVVDDEKKMQVLITVCVSEAGYLVQTAASGLAAMDRLKAEPFDLVLLDIMLPDVDGFSL 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 QL L + ++ LTA E + GL GADDY+ KPF P E+ AR+ ++LRR K Sbjct: 65 IAQLRHLQEDVAIIMLTALGETEHIVRGLNEGADDYIVKPFEPDELNARILSVLRR--KG 122 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S ++NE A IS+ L LT+ E+ +L LL +PGR ++R+QL+D W+ Sbjct: 123 GLASRKGEEKQLKVNEKAHDISFAGQSLGLTKTEYRVLHRLLSNPGRTYTREQLLDLAWD 182 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 + YDR VD HIK +R KL + D + I T G+GY Sbjct: 183 RQVEIYDRNVDAHIKNIRDKLEKVGADSTVIQTVWGVGYK 222 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 135/224 (60%), Gaps = 1/224 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + + LVED++GI ++L +L +EG+ VEV G+ L+K + PD+++LD+ LP+ G+ Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+C+++ + +P++ LTA+ EEVD++LGL++GADDY+ KPF +E+ AR+ +LRR + Sbjct: 62 EVCKEIRKIS-NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + S I FE++ + + L+ EF +LK LL SPGRVW+R ++ + Sbjct: 121 SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHI 180 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 W + R VD +I+ LR K+ I T R +GY + Sbjct: 181 WGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_A9GK22 Response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GK22_SORC5 Length = 265 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L+ED+ +AD L ++ G AV G+ L + PD++I DV +P + GF L Sbjct: 37 ILLIEDDTALADVLSLAVEDAGHAVLRACDGVEGLRRIEGAGPDLVISDVNMPRLDGFSL 96 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-- 123 CR+L +P++ LT+R E+D+ LGLE+GADDYV KPFS R + ARV LLRR + Sbjct: 97 CRRLREAKNLVPIILLTSRDAEIDQALGLELGADDYVVKPFSTRVLLARVHALLRRQEIR 156 Query: 124 -KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 S V+ +G +L+ ++ + P+ +T EF LL+ L+ PG V+SR QL++ Sbjct: 157 AGASRAGCVVALGALQLDPERLEVRYRGAPVTVTLTEFRLLEALVARPGVVFSRNQLLEL 216 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D R VDT+++ LR K+ A++P I T G GY R Sbjct: 217 ARNDDSTVDARLVDTYVRRLRRKMEAVDPAFERIETVIGAGYRWR 261 >UniRef50_O66657 Transcriptional regulator (PhoB-like) n=2 Tax=Aquificaceae RepID=O66657_AQUAE Length = 228 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 134/225 (59%), Gaps = 6/225 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 E + L+ED++ +A + L++EGF VE FER P + D++++D+ LPD+ GF Sbjct: 6 ERIALIEDDKDLAFLVKLNLEREGFEVEHFERATPFFKFISENSVDLILIDIMLPDLDGF 65 Query: 64 ELCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 + L + +PV+F+TA+ EE D+L G E+GADDY+ KPFS +E+ ARVR +L+R Sbjct: 66 RIANFLKSRADLKEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKR 125 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 KK S S V++ EL+ ++ + LT EF +LKTL+++ GR SR L++ Sbjct: 126 YKKVS-ESKVLKYEGVELDTERQKLFVDGREVYLTPAEFKILKTLMENFGRPVSRSSLVE 184 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +W+ ++T +R +D H+K +R KL I T RG+GY Sbjct: 185 KLWDYERETTERAIDVHVKHIRDKLGKYK---GLIKTVRGVGYKF 226 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 132/226 (58%), Gaps = 8/226 (3%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 +VEDE +A + L++ G+ V + GL +D AR+ PDV+ILD+GLP I G E+CR Sbjct: 68 VVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVCR 127 Query: 68 QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK---- 123 +L V+ LTARS+EVD L+GL +GADDY+ KPFSPRE+ AR++ +LRR + Sbjct: 128 RLRTFSDCY-VVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTG 186 Query: 124 ---KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 +T ++ G ++ A ++ D + LTR EF LL TL + P V+SR+QL+ Sbjct: 187 QRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQLI 246 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D VW + + VD HI LR KL + T RG+GY + Sbjct: 247 DRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+DE I D + L+ GF V G L +A PD++ILDV LPD GFE+ Sbjct: 23 VLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFEV 82 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L A + V++LTAR D++ GL G DDY+ KPF+ E+ ARVR +LRR ++ Sbjct: 83 CRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRRP 142 Query: 126 S-TPSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + PSP ++ EL+ A + D P+ L+ EF LL+ L +P RV SR Q++ Sbjct: 143 APEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQILA 202 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW+ D VD ++ LR KL P L I+T RG GY+LR Sbjct: 203 AVWDRDFDGEPTVVDQYVSYLRRKLGQHGPPL--IHTQRGFGYALR 246 >UniRef50_Q0FDL9 Two-component transcriptional regulator ChvI, winged helix family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FDL9_9RHOB Length = 227 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE+ I D L ML EG+ V F L+ K D+ I D+ +P+++G+EL Sbjct: 4 ILIVDDEKEILDPLKEMLLSEGYHVTPFLNPQRALEFLNKNTIDIAIFDIKMPEMNGYEL 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR--VK 123 Q +P LPV+FL+++S+E D+++G +GADD+VAKPFS + R++++L+R ++ Sbjct: 64 LTQARVKNPNLPVIFLSSKSDEQDQIIGFTLGADDFVAKPFSKHLLLFRIKSVLKRHTIE 123 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 S P+I I E++ ++W + LT E +LL +L PG V R+QLMD+ Sbjct: 124 IPSAHKPII-INDLEIDIDRHLVTWKSQIVNLTVTECMLLISLANRPGAVKKREQLMDAA 182 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 ++D DRT+D+HI+ +R K I+ I T G+GY L+ Sbjct: 183 YQDNIYVSDRTIDSHIRNIRRKFENIDQSCDIILTVHGLGYKLKA 227 >UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridium perfringens RepID=Q0TNL1_CLOP1 Length = 232 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 130/231 (56%), Gaps = 12/231 (5%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 E + ++EDE I + L Y +EGF V ++G +D ++ P ++ILD+ LPDISGF Sbjct: 3 EKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGF 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ++CR+L L+ ++ LTAR + VD++LGLE+GADDY+ KPF RE ARV+ LRR Sbjct: 63 DVCRELNKLNAN--IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKD 120 Query: 124 KF------STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 KF ST IG ++ + ++ + + L E LL L +P SR Sbjct: 121 KFLKESNKSTVKDEFIIGSIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSRD 180 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 Q++D VW D RTVD H++ LR KL N ++ I T G+GY +G Sbjct: 181 QILDGVWGDEYFGDFRTVDVHVRRLRQKLN--NEEI--IETIFGLGYMFKG 227 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 132/223 (59%), Gaps = 2/223 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE I + L +EG+ V G L+ K+ PD+++LD +P++SG E+ Sbjct: 5 ILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIEV 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-K 124 R++ +P++ LTA++EEVD+L+G E G DDYV KPFS RE+ AR++T+L+R++ K Sbjct: 65 LREIRK-KSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEAK 123 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+ G L ++ PL LT EF LL+ LK+PG+ +SR +L++ Sbjct: 124 TINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYAI 183 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +A + Y+RT+DTHI LR K+ + I T G+GY L+ Sbjct: 184 GEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLK 226 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 131/228 (57%), Gaps = 13/228 (5%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V ++EDE I + L EG+ V G + + PDV++LDV LP G E+ Sbjct: 17 VVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGLEV 76 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR++ A P +PVL LTAR +E D L+GL +GADDY+ KPFS RE+ AR++ LLRRV++ Sbjct: 77 CRRIQADEP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRRA 135 Query: 126 STPSP-------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + P P ++IG ++ ++ P LT EF LL L +PG V +R+Q Sbjct: 136 APPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTREQ 195 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+ VW+ T RTVD+H+K LR KL + DL + T G+GY+L Sbjct: 196 LLADVWDWVDATGTRTVDSHVKALRRKLGS---DL--VRTVHGVGYAL 238 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 6/223 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+DEQ +A + L + GF G +D+AR+ PDV++LD+GLP++ G E+ Sbjct: 43 VLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLEV 102 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR++ +L LTAR E D++ GL +GADDY+ KPFS RE+ RV +LRR + Sbjct: 103 CRRIRTFSDCY-ILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 126 STP----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 +TP +P+I +G L+ A Q+ +T + LTR EF LL L PG+V +R L+ Sbjct: 162 TTPPQVTTPLI-VGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 VW+ +R VD HI LR KL I+T RG+GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 135/223 (60%), Gaps = 3/223 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +TV +VED G+ D + L++ G+ V V G L +AR PD+++LDV +P + G Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E R+ A +PV+FLTAR E+D++LGLE+GADDYV KPFS E+ ARVR LRR Sbjct: 83 EFLRRFRATE-QVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSS 141 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + P+ V+R G EL+ + LTR EF L+ L++PGRV++R +L++ + Sbjct: 142 E-PLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQL 200 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 E+A + +RT+D H++ LRAK+ A I T G+GY L Sbjct: 201 QEEALGS-ERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRL 242 >UniRef50_D2R5T3 Two component transcriptional regulator, winged helix family n=6 Tax=Planctomycetaceae RepID=D2R5T3_9PLAN Length = 236 Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 132/231 (57%), Gaps = 5/231 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + V ++ED++ +A+ L Y L+Q G+ V G L +A+ + PD+++LD+ LP I Sbjct: 1 MAKTKVLVIEDDRSLAEVLSYNLKQAGYEVLTASDGQDGLLQAQLKTPDIVLLDLMLPVI 60 Query: 61 SGFELCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G ++CR+L A L ++ LTA++EE D L+G +GADDYVAKPFS + + R++ L Sbjct: 61 DGLDVCRRLRADSSMRDLLIIMLTAKAEETDELVGFSLGADDYVAKPFSVKVLLERMKAL 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 RR +TP V ++ Q PL LTR EF LL TL++ PGRV+ R + Sbjct: 121 RRRRSGEATPEEVTSRLGVTVDRRRHQAMADGKPLQLTRSEFRLLDTLIRQPGRVFHRAE 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 L+D+ + +RT+D HI+ LR KL I T RG+GY R + Sbjct: 181 LIDAALGEDTMVMERTIDVHIRALRRKL---GQYADVIETVRGVGYRYRDI 228 >UniRef50_P50351 Transcriptional regulatory protein chvI n=188 Tax=cellular organisms RepID=CHVI_RHISN Length = 241 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 15/238 (6%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ LV+D++ I ++ L+ EG+ VE + G L+ + P + I D+ +P + G Sbjct: 2 QTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPHLAIFDIKMPRMDGM 61 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 EL R+L LPV+FLT++ EE+D L GL++GADD++ KPFS R + RV+ +LRR Sbjct: 62 ELLRRLRQ-KSDLPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAP 120 Query: 124 KF--------------STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKS 169 PS + G +++ +W P+ LT EFL+L +L + Sbjct: 121 ARDAAAAGVAGAAKSADAPSRSLERGQLVMDQERHTCTWKSEPVTLTVTEFLILHSLAQR 180 Query: 170 PGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 PG V SR LMD+ +++ DRT+D+HIK LR K + ++ D I T G+GY R Sbjct: 181 PGVVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKMVDVDFDMIETLYGVGYRFR 238 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 126/201 (62%), Gaps = 4/201 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V LVEDE +A + L+ GF V +F G + ++ P++MILD+ +P + G + Sbjct: 4 VMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGLTI 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR++ LP++ +TAR+EE+DR+LGL +GADDYV KPFSP+E+ ARV+ +LRR+ + Sbjct: 64 CRKVRE-QSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLDRK 122 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + P + F +++ +I + L LT EF LL+ L+ G+V+SR QL+D + Sbjct: 123 AEPE---QNDLFRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLDHINP 179 Query: 186 DAQDTYDRTVDTHIKTLRAKL 206 D+ D DR +D+HIK LR K+ Sbjct: 180 DSFDVADRVIDSHIKNLRRKI 200 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 130/234 (55%), Gaps = 15/234 (6%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 TV LVEDE+ I L L+QE F V E P L+ R+ D++ILDV +P + G+ Sbjct: 6 TVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWT 65 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 CR++ +P+LFLTAR EE DR+LG E+GADDYV KPFSPRE+ RV+ LLRR Sbjct: 66 TCRKIREFS-EVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSS 124 Query: 125 FS---------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 TP + L + L+L+ E+ LL L ++ GRV S Sbjct: 125 TPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLS 184 Query: 176 RQQLMDSVW--EDAQDTYDRTVDTHIKTLRAKLRAINPDL-SPINTHRGMGYSL 226 R L+D VW E A D+ RTVDTH++ LR KL I+P + S + T RG GY Sbjct: 185 RDLLLDRVWGYEFAGDS--RTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKF 236 >UniRef50_C1IA20 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IA20_9CLOT Length = 233 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 21/235 (8%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 RE++ ++ED++ I++ L + L +EG+ V+V GL V D+ + PD+++LD+ L D G Sbjct: 2 RESILIIEDDRDISEILRFALIKEGYKVKVNPNGLEVKDEIKNFNPDLILLDIMLNDTDG 61 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR- 121 F +CR + + +P++ L AR + +D++LGLE+GADDY+ KPF REV RVR +RR Sbjct: 62 FSVCRNISGYN--IPIIMLIARVDIMDKILGLELGADDYITKPFDIREVITRVRVAIRRR 119 Query: 122 --VKKF--STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 +KK S I + + +NE + + + L EF LL L K+ +V SR Sbjct: 120 EEMKKLITSKEQEEILVDNIVINEACRSVHVNNEEIQLKPKEFELLTFLCKNTNKVHSRN 179 Query: 178 QLMDSVWEDAQDTYD-----RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL+D +W YD RTVD HI LR KL+ D I T G+GY L+ Sbjct: 180 QLLDLIW-----GYDFLGDTRTVDVHITRLRKKLK----DNFNIETIFGVGYMLK 225 >UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax=Proteobacteria RepID=B2SJA5_XANOP Length = 247 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 87/203 (42%), Positives = 121/203 (59%), Gaps = 8/203 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +VEDE +A + L G + + G L R + PD+++LD+ LP+ G E+ Sbjct: 22 VLIVEDEPRLAAVVGAYLHAGGHSHDWIADGAQALGAFRAKKPDLVLLDLMLPNRDGLEI 81 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK- 124 CR L A+PV+ +TAR EE+DRL G+EIGADDY+ KPFSPREV ARV+ +L R + Sbjct: 82 CRDLRK-ESAVPVIMVTARVEEIDRLRGVEIGADDYICKPFSPREVAARVQAVLPRHRHD 140 Query: 125 -FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + P+P + I +E A + S L LT+ F LL+TL +PGRV SR+ M + Sbjct: 141 PYGAPAPGLHI-----DEDACRASVDGRALDLTQVAFRLLRTLAAAPGRVCSREHRMGRL 195 Query: 184 WEDAQDTYDRTVDTHIKTLRAKL 206 D + DRTVD+H+K LR KL Sbjct: 196 SADHRSVTDRTVDSHVKNLRRKL 218 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 22/237 (9%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + ++EDE+ IAD L Y L +EGF + G L + PD+++LD LPD Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG ++C+Q+ A + +P+L LTARS+ D++LGLE+GADDY+ KPF REV R+RT+LR Sbjct: 61 SGLDICKQVTAQYN-IPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILR 119 Query: 121 RVKKFSTP----SPVIRIGHFELNEPAAQ--ISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 R+ + P +P + IG ++ A+ ++ + LT EF LL LL GR++ Sbjct: 120 RLAQAQAPVKEAAPSV-IGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIF 178 Query: 175 SRQQLMDSVWEDAQDTYD-----RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +R +L++SVW YD RTVDTHI+ LR KL A DL I T G+GY Sbjct: 179 TRAELLESVW-----GYDFPGDMRTVDTHIQRLRKKLDA--ADL--ITTVFGIGYKF 226 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ V ++EDE+ IAD + LQ E + V G + ++Q D +ILD+ LPD+S Sbjct: 4 NKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLS 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+++ L +P+L LTA+ EE DR+ GL+IGADDY+ KPFSP+E+ ARVR ++RR Sbjct: 64 GEEICKRI-RLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRR 122 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQI-SW-FDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + +I + +L + +W D + LT EF LL +++ G+V+SR +L Sbjct: 123 TNNEGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDEL 182 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + V YDRT+D HIK LR K+ I T G+GY Sbjct: 183 VVKVLGYDYVGYDRTIDVHIKNLRHKIEC--EYYKYIVTVYGVGY 225 >UniRef50_A9G6M8 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G6M8_SORC5 Length = 233 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 127/228 (55%), Gaps = 20/228 (8%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPV---LDKARKQVPDVMILDVGLPDISG 62 V +VEDE IA+++ Y L+++GFA V +DKA D++ILD+ LPD SG Sbjct: 4 VLVVEDEPAIAESIAYFLRRDGFAATVATTLAAAEREIDKA-----DLIILDLMLPDGSG 58 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL--- 119 F+L Q ++ L++R E DR+ LE GADDYV KPFSPRE+ ARVR +L Sbjct: 59 FDLIGQARRSAARAAIIVLSSRDGEADRVAALETGADDYVTKPFSPREIVARVRAVLRRA 118 Query: 120 ---RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 TP P++ ++E + + LTR EF LL +L +PGRV++R Sbjct: 119 ARPSPSAAAPTPLPLV------VDEATRRAYVSGQKVDLTRVEFDLLACMLAAPGRVFTR 172 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 QL+D VW D DRT+D+H+K LR K+ D I T RG+GY Sbjct: 173 AQLIDRVWGDGFAITDRTIDSHVKGLRKKVVEAGGDADLIETVRGVGY 220 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + + +DE+ + D LV L++EG+ GL +++ +++ +++LDV +P++ G Sbjct: 8 ILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLTA 67 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C ++ +P++ LTARSEE+DR+ GL+IGADDY+ KPFSPRE+ AR+ LRR F Sbjct: 68 CMRIREF-SNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSF 126 Query: 126 STP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S +G ++ +S + LTR EF LL + + +V+SR+QL+D +W Sbjct: 127 SKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQIW 186 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 RTVDTHIKTLR KL I T G+GY Sbjct: 187 GTEYHGNLRTVDTHIKTLRLKLGEAG---GYIQTVWGIGYKF 225 >UniRef50_D0MGI0 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGI0_RHOM4 Length = 243 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/231 (39%), Positives = 137/231 (59%), Gaps = 17/231 (7%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+DE I L Y ++EGF VE+ G+ L+KA + PDV+ILD+ +P++ G E+ Sbjct: 20 VLIVDDEDDILALLAYNFKREGFEVELARDGVEALEKAARWQPDVIILDIMMPNMDGIEV 79 Query: 66 CRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 CR++ P+L LTAR+EE D++ GLEIGAD YV KP S + ++ R LLR + Sbjct: 80 CRRIRRDARLRTTPILMLTARTEEEDQIQGLEIGADMYVGKPVSVPVLLSQTRALLRGAR 139 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTP-----LALTRYEFLLLKTLLKSPGRVWSRQQ 178 ++ TP ++RI E++ + + + P + L R EF LL L PG+V++RQ+ Sbjct: 140 RYETPPDLLRIHDLEIDR-DRYLVYREGPEGRETVRLPRKEFELLYFLAAHPGKVFTRQE 198 Query: 179 LMDSVWEDAQDTY--DRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+D VW +D Y DRTVD HI+ +R KL + I T +G+GY R Sbjct: 199 LLDEVW--GRDVYVVDRTVDVHIRKIREKLGS-----HYIETVKGVGYKFR 242 >UniRef50_Q1VFU1 Two-component response regulator CreB n=6 Tax=Vibrio RepID=Q1VFU1_VIBAL Length = 236 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 8/229 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ TV ++EDE IA+ L+++L+ +G+ E F L + +++LDVGLPD + Sbjct: 3 EQPTVLIIEDESAIAENLIHVLEMDGYHAEWFATAGEGLAFLQHNSAALLVLDVGLPDGN 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFELC+ + +P++FLTARS+E+DR++GLEIGADDYV KPFSPRE+ AR++ ++ Sbjct: 63 GFELCKTIREFSD-IPIIFLTARSDEIDRVVGLEIGADDYVTKPFSPREMLARIKLRIKA 121 Query: 122 ----VKKFSTPSPVIRIGHFELNEPAAQISW--FDTPLALTRYEFLLLKTLLKSPGRVWS 175 ++ P V F + A + L LT EF +L L+ V S Sbjct: 122 KAPMMEHKPEPVAVPEQPQFSQDLVAQNFDYGVGGQMLGLTAVEFKILDRLISVSSNVLS 181 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 R+QLM + + Y+R +DTHIK +R KL+ I T RG GY Sbjct: 182 REQLMVAADMAPEAAYERNIDTHIKAIRHKLKPFEMS-ERICTKRGFGY 229 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/229 (41%), Positives = 134/229 (58%), Gaps = 10/229 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR---KQVPDVMILDVGLPDISG 62 + +VEDE+ +A + L++EG VEV G L++ + PD+++LD+ LP++ G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+CR++ P+L LTARS E+DR+LGLE+GADDY+ KPFS RE+ ARV +LRRV Sbjct: 64 LEICRRVRQ-SKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 123 KKF----STPSPVIRIGHFELN-EP-AAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 + T RI H +L +P + +++ P+ LT EF LL L +PGRV+SR Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 L+ VW + DRTVDTHI LR KL I T G+GY Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYK 231 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 127/232 (54%), Gaps = 8/232 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFA-VEVFERGLPVLDKARKQVPDVMILDVGLPD 59 ++ E + LV+DEQGI D LV L++E F+ + G L + D+++LDV LPD Sbjct: 14 VRTEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPD 73 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 I GFELCRQ+ + P+LF+TARS ++D+L GL IG DDY+ KPF+P EV AR+ L Sbjct: 74 IDGFELCRQIRN-YTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQL 132 Query: 120 RRVKKFSTPSPVIRIG----HFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 RR P+ ++ F L I+ + P+ T E LL L P R+++ Sbjct: 133 RRQHMTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFT 192 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDL-SPINTHRGMGYSL 226 +QL + VW D+TV HI LR K+ NP L + I RG+GY Sbjct: 193 AEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEE-NPKLPTYIVNLRGIGYKF 243 >UniRef50_A0Z7U3 Response regulator receiver domain protein (CheY-like) n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7U3_9GAMM Length = 232 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 129/234 (55%), Gaps = 10/234 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGL--- 57 M ++ V L+EDE +A + LQ+ G+ V ++ + PD+++LD+GL Sbjct: 1 MMKQRVVLIEDELALAASYQDFLQRAGYDVTIYRTAESAVKGVEDCHPDLILLDIGLGHD 60 Query: 58 PDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 P+ +GFELCR L A +P++FLTAR EEVD + GL +GADDY+ K S + AR+ Sbjct: 61 PE-AGFELCRTLRARDALVPIVFLTARDEEVDVISGLRLGADDYLTKDISRSHLLARISG 119 Query: 118 LLRRVKKFSTP---SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 LLRRV P V++ G ELN +W + +ALT EF +L + K+PG + Sbjct: 120 LLRRVVALRNPENQEQVLKRGDLELNSERLTTTWGKSQIALTYTEFWMLYVMAKNPGHIK 179 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 SR+QLM++ D+ TV +HI+ +R K + + T G+GY RG Sbjct: 180 SREQLMEAARVVLDDS---TVTSHIRRIRRKFETADKQFKHLETAYGLGYRWRG 230 >UniRef50_C1DA69 DNA-binding response regulator n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DA69_LARHH Length = 233 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+D+ I D L +LQ+ GFAV G+ LD +Q D+++LDV +P G E+ Sbjct: 4 ILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPDGLEV 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CRQL LP+LFL+A E D++ GL G DDY+ KPFS E+ AR+ LRRV +F Sbjct: 64 CRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRVNRF 123 Query: 126 STPSPV------IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + V +R G +++ ++ P+ LT EF LL L + P RV+S ++L Sbjct: 124 APAAAVPDNPQCLRAGVLQVDLDTCRVRVAGQPVTLTEREFRLLALLARRPERVFSLEEL 183 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 W++ D+T+ HI LR KL A + T G GY LR Sbjct: 184 HQGAWDNHDPVADKTIMAHISNLRHKLGAAG-GAGLVETVWGFGYRLR 230 >UniRef50_A5WE25 Two component transcriptional regulator, winged helix family n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WE25_PSYWF Length = 287 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 28/248 (11%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERG---LPVLDKARKQVPDV--MILDVGLPDI 60 + +VED+ IA +L ++EG+ V + +P L Q + ++LDVGLPD Sbjct: 38 ILIVEDDPAIATSLRVTFKREGWQVTWLDNASSVIPTLKHFNDQQQPLSGIVLDVGLPDG 97 Query: 61 SGFELCRQL-----LALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARV 115 G LC+ + + + LP++FLTARS+EVDR+LGLE+G DDY KPFSPRE+ AR+ Sbjct: 98 DGLSLCQDIRHSEGIGILKQLPIVFLTARSDEVDRILGLEMGGDDYCPKPFSPRELVARL 157 Query: 116 RTLLRRVKKFSTPSPVIRIGH--------FELN------EP-AAQISWFDTPLALTRYEF 160 + + RR ++ S S I FEL+ EP + W D L L+ E Sbjct: 158 KAIWRR-EQLSATSIETHISSAEDTTPQLFELDSGIWRYEPLTYTLYWNDHKLELSNTER 216 Query: 161 LLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAIN--PDLSPINT 218 LL LL +P RV+SR+QL++++ + RT+D+H+K++R +L I+ DL I+T Sbjct: 217 KLLLALLANPERVFSREQLLNAISDYPDHRLARTIDSHVKSIRKQLAQISEREDLEIIHT 276 Query: 219 HRGMGYSL 226 HRG+GY L Sbjct: 277 HRGLGYGL 284 >UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory protein phoB n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXI2_METI4 Length = 258 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 141/230 (61%), Gaps = 8/230 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +++ + +VEDE+ + + L +GF + G+ L ARK++PD+++LD+ +P+ S Sbjct: 30 RKKKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFS 89 Query: 62 GFELCRQLLALHP---ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G ++C+ L P ++P++ LTA+S+ DR+LGLE+GADDY+AKPFSPRE+ R++++ Sbjct: 90 GLDVCK-YLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSI 148 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWF-DTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 LRR + + + I+ +P ++++F + LT EF LL TL++ G V SR+ Sbjct: 149 LRRRLEDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQSRE 208 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL+ VW + RT+DTHI+ LR KL + L T RG+GY + Sbjct: 209 QLLKEVWGYDKTVDTRTIDTHIRRLRDKLGRASQYL---RTVRGIGYRFK 255 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 132/232 (56%), Gaps = 9/232 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 ++ +V+DE I + LV L GF VE G ++ + P+++++DV LPDI GF Sbjct: 8 SIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFT 67 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R++ +PVLFLTAR + D+++GL +G DDYV KPFS EV AR+R +LRR ++ Sbjct: 68 VTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQE 127 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + +I++ E+NE + ++ P+ L+ E+ LL L+ + GRV S+ Q+++ VW Sbjct: 128 PDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVW 187 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAI--------NPDLSP-INTHRGMGYSLR 227 + V+++I LR K+ I + P I T RG+GY +R Sbjct: 188 QYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIR 239 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 ++LVED+ +++ + LQ+ F V+V RG VLD+ R+Q PD++ILD+ LP I G + Sbjct: 49 NIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQ 108 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR--V 122 LCR L LP+L LTAR + D++LGLE+GADDYV KP PR + ARVRTLLRR V Sbjct: 109 LCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSV 168 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + +I IG ++ +SW + L+ E+ LL L ++ G V +R +++ Sbjct: 169 NEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQ 228 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + + DR+VD I LR K + I T G GY Sbjct: 229 LRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGY 270 >UniRef50_Q5WC24 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WC24_BACSK Length = 224 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 133/223 (59%), Gaps = 1/223 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 E + +V+DE I + +LQ+EG+ V G+ + ++Q D++ILD+ +P ++G Sbjct: 2 EHILIVDDEIQITSIVGELLQEEGYQTTVANDGMNAIKLIKEQDFDLIILDIMMPYVNGL 61 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ++CR + +P+LF+TAR+ D++ GL IG DDY+ KPF+ ++ AR++T LRR K Sbjct: 62 DVCRSVREF-TDVPILFVTARTSMNDQINGLNIGGDDYINKPFTHEQLLARIKTHLRREK 120 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + P+ + G +L+ ++ + +TPL LT EF +++ L+ +P +++S+ L +++ Sbjct: 121 RKQQPTDELVYGKIKLDRRTNELRYGETPLLLTNKEFKIMEMLMSNPRQIFSKDHLYETI 180 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W TV HI+ +R ++ I+P + I+T G+GY L Sbjct: 181 WGVEATGQSHTVTEHIRNIRIRIHKIDPMANLIHTVWGVGYKL 223 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VED+ + + L Y L +EG+ +E E GL L R P ++ILDV LP I Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFELCR L+ ++P+L LTARS E D++ GLE GADDY++KPF RE+ AR++ LLR Sbjct: 87 DGFELCR-LIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLR 145 Query: 121 RVKKFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 R + ++ + ++IG E+ + L + EF L ++++ RV+SR+ Sbjct: 146 RSQTQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSRE 205 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 QL++ VW + RTVD HI LR K+ A + T RG GY Sbjct: 206 QLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 133/227 (58%), Gaps = 5/227 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVP---DVMILDVGLPDISG 62 + +V+DE I L L+ EGF V G L + R D+++LDV +P + G Sbjct: 4 ILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGMDG 63 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+ R+L + V+ +TARSEEVD+L+GL +GADDYV KPFSPREV ARV+++LRR Sbjct: 64 LEVLRRLRTVADTY-VILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRRR 122 Query: 123 KKFST-PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + +T P +R ++ +I+ P+ LT EF LL L+++PGRV+SR QL++ Sbjct: 123 RDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQLLE 182 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 VW + +R VD HI+ LRA+L D I T RG+GY G Sbjct: 183 QVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIG 229 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 +VED+ I++ + +L+ E FAV+V G L+ A + +++ILD+ LP + G+E+CR Sbjct: 10 VVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEICR 69 Query: 68 QL--LALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 +L A + P++ LTA++EE D++LGL++GADDY+ KPF PRE ARV LLRR + Sbjct: 70 RLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTDY 129 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + P + + + Q + LT EF LL L ++ GR R+QL++ VW Sbjct: 130 NQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVWG 189 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 RT+D HIK LR K+ + P + + T G+GY L Sbjct: 190 YEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKL 230 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q+ V +V+D+ + L L+ G+ V G ++++ + P ++ILD+ +P Sbjct: 3 QQYPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKD 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+ R L H +PV+ LTA+ E+ DR++GLE+GADDY++KPF+PRE+ AR++ +LRR Sbjct: 63 GLEVLRDLRP-HSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRR 121 Query: 122 VKKFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 K +P I + L+ ++ L L+ EF LLK L+ +PGR +R Sbjct: 122 AKGPENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDD 181 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 LM SVW + +DR++D HI LRA + S I T G GY Sbjct: 182 LMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGY 227 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 133/228 (58%), Gaps = 8/228 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE I L L++E +A++ E G + K + D+++LD+ +P G E+ Sbjct: 9 ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIEV 68 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK- 124 CRQ+ A P++ LTA+ EE +R+ G E G DDY+ KPFSPREV RV+ LLRR + Sbjct: 69 CRQIRE-KKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQT 127 Query: 125 --FSTPSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 F+ +P V+ H ++ A +++ T ++LT E+ LL L K+P +V+ R++L Sbjct: 128 SYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREKL 187 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLS-PINTHRGMGYSL 226 + VW+ RTVDTH+K LR KL ++P+ + I T G+GY Sbjct: 188 LKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKF 235 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 128/227 (56%), Gaps = 8/227 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE I + Y L + G+ V G L+ AR++ P +++LD+ LP +SGF++ Sbjct: 11 ILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFDV 70 Query: 66 CRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 QL A + VL LTAR EE DR+ GL +GADDY+ KPFSP E+ RV +LRR Sbjct: 71 LEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRTG 130 Query: 124 KFSTP--SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 +TP + + IG ++ A + + LT EF LL TL + GRV R L++ Sbjct: 131 S-ATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLLE 189 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +VWE A D RTVD H++ LR+KL A I T RG GY LR Sbjct: 190 TVWEAAPDIQTRTVDMHVQRLRSKLGAAG---ELIETVRGFGYRLRA 233 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 133/225 (59%), Gaps = 9/225 (4%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEG-FAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + ++ ++ED+ IA ++ Y L+QEG F V + G L + P++++LD+ LP ++ Sbjct: 2 KRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLMN 61 Query: 62 GFELCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 GFE+CR+L +P++ LTAR++E D++ GL +GADDY+ KPFS RE+ AR+ +L Sbjct: 62 GFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVL 121 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR + TPS V G ++ + + LTR EF LLK L +S GRV +R+ L Sbjct: 122 RRTE--GTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 +D VW D RT+D HI+ +R KL I+ I T G+GY Sbjct: 180 LDRVWGIDYDGETRTLDVHIRRVRQKL-GID---GYIETAVGIGY 220 >UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN2_9GAMM Length = 225 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +V L++D+ ++ L + ++E + V + G+ LD A ++++LDV LP I G Sbjct: 3 HSVLLIDDDHEMSAMLTELFKREAVELTVVDDGVKGLDAALNGDFELILLDVMLPGIDGM 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +L ++L H VL LTAR ++ DR++GLE+GADDY+ KPF+PRE+ ARVR LLRR Sbjct: 63 QLLQRLRQQHRDTAVLMLTARGDDDDRVMGLELGADDYLPKPFNPRELIARVRALLRRTA 122 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + V+ + F L+ A+++ PL +T EF +L+ L++ G++ S+ QL + Sbjct: 123 NTMMQNEVLTVSGFTLDPSKAEVTCDRQPLVMTPTEFDILRCLMQQAGQMVSKDQLSVAA 182 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +DR++D HI +R KL A NP+ I T RG GY L Sbjct: 183 LGRKMGPFDRSLDVHISNIRKKLPA-NPE--RIQTVRGRGYRL 222 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 V +VED+ I L L G++V + G + +A + PD+++LDVGLPDI GF Sbjct: 13 HNVLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGF 72 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 + R L A PVLFLTAR++ DR++GL G DDYV KPF +EV R+R +LRR Sbjct: 73 AVTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSD 132 Query: 124 ---KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 T P +R EL++ ++ P+ L+ EF LL LL P RV +++++ Sbjct: 133 MPPSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEIL 192 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW R VDT+++ LR K+ P L I T RG+GY L Sbjct: 193 SEVWHYDFAGDARIVDTYVRNLRRKIDRFEPQL--IQTVRGVGYCL 236 >UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3L5_9CLOT Length = 227 Score = 145 bits (367), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 137/225 (60%), Gaps = 5/225 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +VED++ I D L + L+ EG+ D +PD+++LD+ LPD SGF+ Sbjct: 5 VLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGSGFDF 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C+ + A + +P++ LTA+++ D++LGLE+GADDY+ KPF +EV +R++ + RR++K Sbjct: 65 CKDINAKY-TIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEKS 123 Query: 126 STP--SPVIRIG-HFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 ++ I+I + ++N + D + L E+ LL+ +++ +V+SR+QL+D+ Sbjct: 124 ASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLIDN 183 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +WE + D RTVD HI+ +R+KL N S I T G+GY +R Sbjct: 184 IWEFSYDGDIRTVDIHIRRIRSKLDT-NGHPSVIETVFGVGYMMR 227 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 145 bits (367), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 119/211 (56%), Gaps = 17/211 (8%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + ++EDE I L + QE F V GL L AR PD+++LD+ LP + G + Sbjct: 5 ILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLSV 64 Query: 66 CRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV- 122 R L L +PV+ LTA+S+E DR++GLE+GADDY+ KPF+P+E+ AR++ +LRR Sbjct: 65 NRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRTE 124 Query: 123 -------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 ++FS V+ I E DT L LT EF LL L+K+ GRV Sbjct: 125 QEPAQRPERFSAAGVVLDIARHEARAG-------DTLLDLTAKEFSLLLALVKNSGRVLD 177 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKL 206 RQ L+D VW + DRTVD HI+ LR KL Sbjct: 178 RQMLLDLVWGADYEGTDRTVDVHIRRLRKKL 208 >UniRef50_D0IVE7 Two component transcriptional regulator, winged n=4 Tax=Comamonadaceae RepID=D0IVE7_COMTE Length = 249 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 137/229 (59%), Gaps = 13/229 (5%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +VEDE GIA L L+++G + + + G L R+ PD+++LD+ LP + G ++ Sbjct: 22 VLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVDGVDV 81 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 R ++ +PV+ +TA +++VD+LL L +GADDYV KPF+P EV ARVR +LRR + Sbjct: 82 LR-MIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQ-- 138 Query: 126 STPSPV---IRIGHFELNEPAAQISWFD-----TPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + P+PV IR+G E++ A + +D PLALT EF LL L P R +SR Sbjct: 139 AKPAPVAAPIRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLLACLAAQPRRCFSRA 198 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+++ ++ D +R +D+H+ LR KL+ D I T RG+GY L Sbjct: 199 YLIENCLPES-DALERVIDSHLSKLRRKLQLAGQD-GLIETVRGIGYRL 245 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 136/228 (59%), Gaps = 2/228 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + V +V+D++ + + + L+ EGF+V++ G + K + +ILD+ LP++ Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 61 SGFELCRQLLAL--HPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G+E+C ++ + +P++ LTA+ EE D+++GL++GADDYV KPFSPRE+ ARVR L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 +RR + F ++ G ++ + ++ D + L EF LL L+K+P RV++R++ Sbjct: 121 IRRDQDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREE 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +++ +W + RTVD H+K +R KL + S I T G+GY Sbjct: 181 ILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKF 228 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 7/227 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + + ++ED+ IA + + L+ EGF E G L AR+ PD ++LD+ LP I G Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 64 ELCRQLLALHPAL---PVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 + R L+ PA+ PV+ +TA+ EE DR++GLE+GADDY+ KPF P+E+ ARV+ +LR Sbjct: 63 TVNR-LIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLR 121 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + + + IG ++ + ++ P LT EF LL L++ GRV R+ L+ Sbjct: 122 RRETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLL 181 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++VW D + DRTVD HI+ LR K+ + + T + +GY R Sbjct: 182 NTVWGDDYEGTDRTVDVHIRRLRKKM---GESAAWVETVKQIGYRFR 225 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 132/232 (56%), Gaps = 8/232 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 E + +V+DE+ IAD + L+ EGF V F G L+ + D+ ILD+ LPDI G Sbjct: 2 NENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDG 61 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F +C+++ + P++ LTA+ E++D+++GL IGADDY+ KPF+P EV ARV+T LRR Sbjct: 62 FHICQKIREKY-YYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 123 KKF--STPSPVIRIGHFE-----LNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 ++ S I + ++ +N+ + S F +ALT EF +L L + G+V Sbjct: 121 MRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVP 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++L ++VW + + TV HI LR K+ + + I T G+GY++ Sbjct: 181 SEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 +VED++ + +TL + EGF V++ + G L KA+ D++ILDV +P I G ++C+ Sbjct: 7 IVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVKVCK 66 Query: 68 QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFST 127 QL L +P++ LTA+S+ D+L GLE GADDY+ KPFS +E+ RV+T+LRR K Sbjct: 67 QL-RLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKVQE 125 Query: 128 PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDA 187 V++ +L + ++ + + LT EF LLK L ++P + R+ L++ VW A Sbjct: 126 EKIVLKDLTMDLKD--FKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIA 183 Query: 188 QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D VD +IK +R KL P L I T RG GY L Sbjct: 184 SDYDSNIVDVYIKNIRNKLEDKPPKL--ILTIRGRGYML 220 >UniRef50_Q2G7F8 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7F8_NOVAD Length = 243 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V++VED+ IA L L EGF F L L AR Q P +++LD+ LP I G Sbjct: 10 VYVVEDDVRIASVLSDYLTAEGFLPRWFSDPLVALASARSQPPALVLLDIMLPGIDGLAF 69 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C +L A P++ LTAR D++ GL GADDYV KPFSP EV ARV LRR + Sbjct: 70 CHRLRAFCDC-PIIMLTARISTEDKVAGLSAGADDYVVKPFSPGEVMARVHAHLRRAE-- 126 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS--- 182 + R G + ++E +ISW L L+ E+ + L++ P R ++R QL+DS Sbjct: 127 GRLAAAARNGGYVIDEAGMRISWKGQWLDLSLAEYAVASALMRQPERSFTRGQLLDSLLA 186 Query: 183 -VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + E +T +R VD+HIK +R K+ AI+P + I T G+GY Sbjct: 187 VLGERTLETSERAVDSHIKNIRRKILAIDPGGACIATVYGLGY 229 >UniRef50_Q2S085 Response regulator DrrA n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S085_SALRD Length = 236 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 136/231 (58%), Gaps = 15/231 (6%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ +V+DE+ + + Y L+QEGF V + G+ L++AR+ PD++ILD+ +P + G E Sbjct: 12 TILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIE 71 Query: 65 LCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +C++L A +P++ LTAR+EE D++ GL++GAD Y+ KP S + ++ + LLR Sbjct: 72 VCQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLRSA 131 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISW----FDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 ++ P I + + ++ + +T + R EF LL L PGRV+SRQ+ Sbjct: 132 HRYEDPPDQIEVHNLRVDRDRYLVYQENGDGETEMRFPRKEFELLYFLASHPGRVFSRQE 191 Query: 179 LMDSVWEDAQDTY--DRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++D VW +D Y DRTVD HI+ +R K+ + I T +G+GY ++ Sbjct: 192 ILDEVW--GRDVYVVDRTVDVHIRKIREKIGS-----EYIETVKGVGYRMK 235 >UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO Length = 248 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 128/227 (56%), Gaps = 4/227 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVP-DVMILDVGLPD 59 M V +VED+ ++ + L+ F V G L A P ++++DV LPD Sbjct: 22 MSSPAVMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPD 81 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + GFE+C +L A +PVLFL+AR DRL GL GADDY+AKPFS E+ AR+R +L Sbjct: 82 LDGFEVCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVIL 141 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR + T + + G L+E A +++ +AL+ E+ LL+ LL++ GR SR Q+ Sbjct: 142 RR-RGVLTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQI 200 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +D VW+ D V+T I +LR K+ P L I+T RG+GY L Sbjct: 201 LDHVWDYGFDGESTVVETFISSLRKKVDTAPPTL--IHTVRGVGYRL 245 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ LVED+ + +TL Y ++ GF V GL L+ AR+ PD++ILDV LP + GF Sbjct: 3 TILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFS 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR-RVK 123 +CR +A +P++ LTA +E R+ GLE+GA DYV KPFS E+ ARVR +LR + Sbjct: 63 VCRA-VAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121 Query: 124 KFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + TPS V+ +G +L+ + ++ + D + L+ EF LL L+ + G SR L++ Sbjct: 122 QRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLER 181 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW +RT+D H++ LR KL + + I T RG+GY + Sbjct: 182 VWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQ 226 >UniRef50_Q484N4 Transcriptional regulatory protein CpxR n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484N4_COLP3 Length = 242 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 138/232 (59%), Gaps = 10/232 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 +Q + + L++D+ +++ L L+ E F V G L KA D+++LDV +P + Sbjct: 6 VQTKHILLIDDDAELSELLTEYLESENFKVTSCLDGASGLAKAFDDSFDLILLDVMMPIL 65 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +GFE+ + L H P+L LTA+ ++ DR+LGLE+GADDY+AKPF RE+ AR++ +LR Sbjct: 66 NGFEVLKALGGNHKT-PILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILR 124 Query: 121 R---VKKFST-----PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGR 172 R VK ST P+ + I ++N+ +I+ + L LT E+L+L ++++ + Sbjct: 125 RISIVKSQSTLAVNAPTKQLTINQVKVNQATREITCRERLLELTGTEYLVLVYMIENHSK 184 Query: 173 VWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + S+ ++ + V + YDRTVD H+ +R KL AI+P + + T RG GY Sbjct: 185 IISKAEISEKVLQRKLSPYDRTVDVHVGNVRRKLLAIDP-IDKMKTVRGAGY 235 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE I TLV Q GFAV E + ++ D ++LD+ LPD G L Sbjct: 14 IAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLTL 73 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 R + A +PV+ +T+R+EE DR++GLE+GADDYV KPFSPREV ARV+T+LRR + Sbjct: 74 MRDIRA-DSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRTRAV 132 Query: 126 STPSPVIRIGHFE---LN-EPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + P R+ F L+ E S P+ LT EF LL L++ PGR+ SR L+D Sbjct: 133 ADPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRNDLLD 192 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + D+ DRTVD + LR K+ A I T G+GY Sbjct: 193 VMSSREWDSNDRTVDVLVGRLRRKIEADPGKPQIIVTEYGLGY 235 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 134/224 (59%), Gaps = 4/224 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 +++V+DE I + + L+ G+AV V G+ ++ K PD++ILD+ LPDI G ++ Sbjct: 12 IFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGEDI 71 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-K 124 C ++L +P++ LT +++E D L GL+IGADDY+ KPFSPR++ ARV+ LLRR + + Sbjct: 72 C-EMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTEDE 130 Query: 125 FSTPSPVIRIGHFEL--NEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + + +L N+ ++ + LT E+ +L T+++ PG++++R++L+ Sbjct: 131 LGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELIIV 190 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 YDRT+D+HIK LR K+ + I T RG+GY Sbjct: 191 TLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_Q1J3D6 Two component transcriptional regulator, winged helix family n=4 Tax=Deinococci RepID=Q1J3D6_DEIGD Length = 244 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 126/226 (55%), Gaps = 12/226 (5%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERG---LPVLDKARKQVPDVMILDVGLPDIS 61 TV +V+D+ I + L L+Q+GF V G L +L +A DV +LD LP ++ Sbjct: 17 TVLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLLPQA-----DVAVLDWMLPGMT 71 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G EL R+ A P +P+L LTAR E D+LLGLE GADDYV KPFSPREV AR++ LLRR Sbjct: 72 GLELARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRR 131 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + VI G L+ A + L L++ EF LL TL + PG W+R++L++ Sbjct: 132 MGV----REVIEHGELHLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLE 187 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW +R VD HI LR KL I T RG+GY R Sbjct: 188 RVWGVDYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRFR 233 >UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVH5_9GAMM Length = 247 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 127/221 (57%), Gaps = 4/221 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE+GI + L LQ++GF V + R +P +++LD LP SG Sbjct: 13 ILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVAW 72 Query: 66 CRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 CR L +LP++ LTAR EE DR+ GLE GADDY++KPFSPRE+ ARV+ LLRR Sbjct: 73 CRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRSY 132 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 TP+ V RIG ++ A +++ D + + EF +L+ +P RV+SR+ L+D + Sbjct: 133 GGLTPTHV-RIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDHI 191 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 W +RTVD HI+ LR L + + I T RG GY Sbjct: 192 WGRQSFIEERTVDVHIRRLRRALAKVGY-ANIIETVRGEGY 231 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 11/236 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + LV+D+ I + L +EGF + G + A PD++ILDV LPD+ Sbjct: 1 MTGELILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFE+CR ++ +P+LFL+ R +++D+++G IG DDY+ KPFSP + A+V++ +R Sbjct: 61 DGFEVCR-IIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIR 119 Query: 121 RVKKFS------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 R K+ S + + G ++ +++ P++L EF LL L ++ GRV+ Sbjct: 120 RYKELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVF 179 Query: 175 SRQQLMDSVWEDAQDTYD--RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 S + L DS+W +D++ RTV HI LR K+ I T RGMGY G Sbjct: 180 SAEHLFDSIW--GKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 132/228 (57%), Gaps = 8/228 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ ++ED+ I + + L ++ + G L + PD++ILD+ LPDI G Sbjct: 2 KTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDGI 61 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+CR + P+ +TAR+EE+DR++GLE+GADDY+ KPFS RE+ RV RR Sbjct: 62 EVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 121 Query: 124 KFSTPSP-------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 K + P +IR G +++ +++ D + ++R EF +L+ + SPG+V+SR Sbjct: 122 KKAGIKPNVGASGEIIR-GALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + ++++VW D ++R +D+H+K +R+KL + I T G+GY Sbjct: 181 EMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGY 228 >UniRef50_C0QZY4 OmpR n=2 Tax=Brachyspira RepID=C0QZY4_BRAHW Length = 228 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 133/230 (57%), Gaps = 10/230 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M +E ++ VED+ I D + Y +++ G+ +E F G +L+ +KQ P++++LD+ LPDI Sbjct: 1 MNKELIYSVEDDDNIRDLIKYTVEEAGYTIECFSNGNDMLEALKKQTPNLVLLDIMLPDI 60 Query: 61 SGFELCRQLLALHPALP--VLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G E+ + + + LP V+ LTA++ E++ + GL +GADDY+ KPFS E+ AR++ Sbjct: 61 EGTEILKIIRTDYAHLPIKVIMLTAKTSEINIVTGLNLGADDYMPKPFSVLELLARIKAN 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 LR+ K + + G +L + + + LT+ EF LLK L+++ V R+ Sbjct: 121 LRK-KDVRLDAEELTFGDIKLVVKKRNVFVGERQVILTQKEFDLLKLLMENANNVVDRET 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPIN--THRGMGYSL 226 +++ VW RT+D HIK++R KL DL+ N T RGMGY L Sbjct: 180 MLEEVWGVDHTMETRTIDMHIKSIRQKL-----DLTKENIITVRGMGYKL 224 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 9/223 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+D+ I + + +QE F V + + PD+++LD+ LPD SG ++ Sbjct: 3 ILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLDV 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 ++L + +PV+FLTAR ++D +LGLE+GADDY+ KPF+PR + AR++ + RR + Sbjct: 63 IKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEMG 122 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 V+++G E++ + + L R EF LLK ++++PG+V++RQ+++D VW Sbjct: 123 PKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVW- 181 Query: 186 DAQDTYD--RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D + RTVD HI LR K+ + I T RG+GY L Sbjct: 182 -GMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKL 218 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 139/232 (59%), Gaps = 9/232 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + +V+DE+ I + + + L++EG+ V G L A++++PD+++LD+ LP I Sbjct: 1 MPNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGI 60 Query: 61 SGFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 GFE+ R++ A+ +P++ LTA+ EE D + GLEIGA+DY++KPFSPRE+ AR+R + Sbjct: 61 DGFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGI 120 Query: 119 LR---RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 LR RV+K +T + VI G ++ ++ L LT EF +L L+ G V++ Sbjct: 121 LRRRTRVEKPATQATVI-AGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R Q++D+V + +R+VD I LR KL P I T RG+GY R Sbjct: 180 RGQIVDAVHGENYAVTERSVDVTIAGLRKKL---GPCADFIETVRGVGYRFR 228 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 127/227 (55%), Gaps = 11/227 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVED+ IAD L L G AV+V G L +A + D+++LD+ LP GF++ Sbjct: 9 ILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFDI 68 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-- 123 CR+L P+L +TA++EEVD++LGLE+GADDY+ KPFS REV ARV+ L RRV+ Sbjct: 69 CRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEVD 128 Query: 124 ---KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + I +G + +++ + LT EF LL + PGR +SR +L+ Sbjct: 129 QETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDELL 188 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSP---INTHRGMGY 224 D VW Y TV+THI LR K I PD S + T G+GY Sbjct: 189 DEVWGYQYSGYSHTVNTHINRLRNK---IEPDPSEPRYVKTVWGVGY 232 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 130/234 (55%), Gaps = 16/234 (6%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q+E + +V+DE I L L G+ V G L RK+ P +++LDV +P + Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+ +C++L +P++ LTA E DR+ GLEIGADDYV KPFSP+E+ AR+R++LRR Sbjct: 64 GYGVCQELRK-ESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122 Query: 122 VKKFST-----PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 K +T S +I IG +++ Q+ + + LT EF LL+ L+ G +SR Sbjct: 123 ADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSR 182 Query: 177 QQLMDSVW----EDAQDTYDRTVDTHIKTLRAKLR--AINPDLSPINTHRGMGY 224 ++ VW E DT R VD HI LRAKL NPDL I T RG GY Sbjct: 183 ASILQEVWGYTPERHVDT--RVVDVHISRLRAKLEDDPSNPDL--ILTARGTGY 232 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 132/222 (59%), Gaps = 3/222 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L+ED+ + D LV L+ + + V+ G D A+ D++++DVGLP G L Sbjct: 3 ILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGITL 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L A +P+L +TA+ +VDR+ GL+ GADDY+ KP E+ ARVR LLRR + Sbjct: 63 CRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGSE- 121 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 T +P++++G+ +L+ + Q+++ + L LT E+ LL+ L+ PG+V+SR QL++ +W Sbjct: 122 -TKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + +V H+K LR KL+A + I G+GY L Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGA-VDWIENIYGIGYRLN 221 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V LV+D+ + +V +LQ G + L + PD++ILDV +P SG E Sbjct: 381 NVLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIE 440 Query: 65 LCRQLLALHP---ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 LC+ L + P +LP++FLTA + +GADD+V KP E+ R+ L R Sbjct: 441 LCQSLRS-DPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLER 499 Query: 122 VK 123 + Sbjct: 500 TR 501 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE IAD LV L +EG+ VE E G + D++ILD LP G +L Sbjct: 5 ILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQL 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 R+ + PVLFLTAR +R+ GL+ GADDY+ KPF+ E+ ARVR LLRR + Sbjct: 65 LRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQA 124 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S V+ + +++ TPL LT EF LL L++PG+V SR ++ D+VW+ Sbjct: 125 S--GVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWD 182 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D+ D T++ H+K LR KL A P + I T RG GY L Sbjct: 183 DSYDGLSNTLEVHVKELRHKLEACGPRV--IQTLRGRGYVL 221 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 135/236 (57%), Gaps = 12/236 (5%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + +V+D+ I + + Y L +EG+ V L + D+ I+D+ LP + Sbjct: 25 MAKKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGM 84 Query: 61 SGFELCRQLLAL--HPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 GFEL RQL ++ + PV+FL+A+ EE D++LGLE+GADDY+ KPFS RE+ AR++ + Sbjct: 85 DGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAV 144 Query: 119 LRRVK-----KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 RR++ + P ++ G E++ ++ D ++LT EF LL+ L ++ G+V Sbjct: 145 FRRIQLSAQEREERPKKIVAKG-LEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKV 203 Query: 174 WSRQQLMDSVWEDAQDTYD--RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +SR L+D +W D Y RTVD HI+ LR K+ + I T RG GY R Sbjct: 204 FSRDVLLDKLW--GYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFR 257 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 134/225 (59%), Gaps = 11/225 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VED++ + L L+ G++V FE GL +++ + + P+++ILD+ LPD+ G+E+ Sbjct: 7 LMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYEV 66 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 + L L P + +L LTA + D+L G E GADDY+ KPF E+ AR++ LLRR K Sbjct: 67 AQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRR-KNI 125 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S P I+ G E+ E + + + L++ EF LL L K+ RV S+++++D+VW Sbjct: 126 SISQP-IKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVW- 183 Query: 186 DAQDTY--DRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D Y D TV+ ++ +R KL +P+L I T RG+GY L G Sbjct: 184 -GIDYYGSDNTVEVYVNYIRKKL---SPEL--IKTIRGVGYKLVG 222 >UniRef50_B1I7Y4 Response regulator SaeR n=46 Tax=Firmicutes RepID=B1I7Y4_STRPI Length = 232 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 2/224 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ LV+DE I D L Q G+ V V GL L+ +K+ D++I DV +P + G+ Sbjct: 3 KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGY 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +L ++ L P P LF+TA++ E D++ GL +GADD++AKPFSPRE+ RV +LRR+ Sbjct: 63 DLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLH 122 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + + +I +G+ ++N + ++ + L LT F LL L +P RV+S+ L + + Sbjct: 123 R-GGETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKI 181 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSP-INTHRGMGYSL 226 W++ T++ HI LR +L + D +P I T G+GY + Sbjct: 182 WKEDYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKI 225 >UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae RepID=Q2S514_SALRD Length = 237 Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 132/221 (59%), Gaps = 8/221 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+DE+ + + + + L++EG+ V G L+ A ++ D+++LD+ LP + G+E+ Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETASGKI-DLIVLDIMLPGVDGYEV 70 Query: 66 CRQL--LALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 CR+L +P++FL+A++EE D++ GL +G DDY+ KP SP+ + A V+ +LRR Sbjct: 71 CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRR-- 128 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 S ++ + ++ E + L LT EF LL+ L++ P + ++RQQL++++ Sbjct: 129 SGVEESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETI 188 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 W+DA +RTVD HIK LR KL I T RG+GY Sbjct: 189 WKDAMMVTERTVDAHIKNLREKLGDFA---KHIQTVRGVGY 226 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V ++EDE IA++L L EG V V G L +Q D++ILD+ LPDI G + Sbjct: 19 VVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMVV 78 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L A LP++ LTAR E +R+ GL++GADDY+ KPFS E+ ARV + RR Sbjct: 79 CRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRR-AGI 137 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S P V+++ LN +++ + LT EF LL+ ++ P RV++RQ L+ VW Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V+ HI LR K+ + + I T G+GY+LR Sbjct: 198 FTYVGDSNIVEVHISNLREKIG--DHERKLIRTVYGVGYTLR 237 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 5/224 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERG--LPVLDKARKQVPDVMILDVGLPDISGF 63 + ++EDE+ + L L++EG+ V++ G + + + D++ILD+ LP I G Sbjct: 3 ILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKIDGI 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 LC+ L A + P+L LTA+ + D++LGLE GADDY+ KPFS E+ AR+R LLRR K Sbjct: 63 SLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRRPK 122 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 P+ V+++ L+ + ++ D + LT EF +L+ L+++ R+ S++Q++ V Sbjct: 123 NL-MPT-VLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 W DT V+ HIK LR KL D + I T RGMGY ++ Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLER-KRDENIIETIRGMGYRIK 223 >UniRef50_A0LCI2 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A0LCI2_MAGSM Length = 231 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 T+ LV+D++ + L L +EGF+ ++ G L++A + + ++LDV LP I+GF Sbjct: 2 NTILLVDDDKQLCAMLAEYLYEEGFSCDLCHSGTEALNRALQSPYEALVLDVMLPGINGF 61 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV- 122 +L R+L +PV+ LTAR EE D ++GLEIGADDY++KP +PR + AR+R +LRR Sbjct: 62 DLLRKLRQ-QTEVPVIMLTARGEETDSIVGLEIGADDYLSKPCNPRVLAARLRAVLRRTG 120 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + +T S + G L A ++ + LT EF +L+ LL+ G+V +++L Sbjct: 121 GERATSSEQLNQGALTLYPMARKVMLGAVEIELTSAEFNILEQLLREAGQVVDKERLSQK 180 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 YDR+VD HI +LR KL A I+T RG GY Sbjct: 181 GLGRKWMPYDRSVDMHISSLRKKLAATGDSSPRIHTLRGSGY 222 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 128/229 (55%), Gaps = 4/229 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q + + +VED+ IAD L L+ E + V G L + D +ILD+ LP + Sbjct: 3 QPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVD 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR+ A+ P++ +ARS EV R+LGLE+GADDY+AKPFS E+ ARV+ LLRR Sbjct: 63 GLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 122 VKKFSTPSPV----IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 V + S + + + ++ A + S L LT EF LL + PG+V+SR Sbjct: 123 VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+++VW + Y+ TV+THI LRAK+ A + I T G GY L Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxalobacter formigenes RepID=C3X860_OXAFO Length = 233 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 133/225 (59%), Gaps = 8/225 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGF-AVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 ++ +VEDE IA+ + + ++ G+ V VF G ++ PDV++LD LPD+SG Sbjct: 7 SILVVEDEPAIAELIAFSVKSAGWRPVTVFS-GNDAWTALQRFRPDVVLLDWMLPDLSGL 65 Query: 64 ELCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 L ++ ALPV+ LTA++ E D++ GL+ GADDY+ KPFSP+E+ AR+ LLRR Sbjct: 66 RLLTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR 125 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 K ++R G L+ + Q++ + + + EF LLK L+ +P RV+SR QL+D Sbjct: 126 -KVPDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLD 184 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW + D +RTVD H+ LR +A+ + + T RGMGY L Sbjct: 185 KVWSNQLDIEERTVDVHVLRLR---KALKGQENLVRTVRGMGYML 226 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + + +D I D L ++E + G + R+ P V++LDV +P G+E+ Sbjct: 4 ILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYEV 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR++ A +PV+ +TAR E+ ++++GL+IGADDY+ KPFSP EV AR+R +LRR+ K Sbjct: 64 CRKIRA-KSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTKK 122 Query: 126 S---TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 T V+ I + E+N + T ++LT+ E + TL +P +V++R L+DS Sbjct: 123 ENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLDS 182 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +W RTVD+HIK LRAKL + I T G+GY Sbjct: 183 LWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKF 226 >UniRef50_Q4HSL5 Phosphate regulon response regulator PhoB n=3 Tax=Campylobacterales RepID=Q4HSL5_CAMUP Length = 224 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 134/229 (58%), Gaps = 18/229 (7%) Query: 6 VWLVEDEQGIADTLVYMLQQE-----GFA-VEVFERGLPVLDKARKQVPDVMILDVGLPD 59 V+++ED+ I + ++Y L+ + GF +E F++ L + ++P V++LDV LP+ Sbjct: 2 VFVLEDDANILELVLYALKSQNINAQGFLDIESFKKAL------KTEIPQVLVLDVMLPN 55 Query: 60 ISGFELCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 SGFE+ ++L A + VL LTA + E+D++ GL++GADDY+ KPFS E AR+R Sbjct: 56 ASGFEILKELKANANTKNISVLMLTALNHEIDKVKGLDLGADDYITKPFSVMEFIARIRA 115 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 +LRR+ + ++ + EL+ ++ D + LT EF LL LLK+ RV+SR Sbjct: 116 ILRRISQEQNTENIV-LDELELSYKTREVKVCDAIIVLTLKEFELLGFLLKNQNRVFSRD 174 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L++ +W + RT+D HIKTLR KL + I T RG+GY + Sbjct: 175 DLLEILWGYSYSGESRTIDIHIKTLRQKLGIAS---RFIKTIRGVGYKI 220 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE G+ L L+QEGF V G L K R D+++LD+ LP + G + Sbjct: 4 ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLTI 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR++ A P++ LTA+++++D++LGLE+GADDY+ KPF+ RE+ AR+R +LRR + Sbjct: 64 CREVRAAG-MTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEAA 122 Query: 126 STPSPVIR--IGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 S R +G L+ + PL LT E+ LL+ L + PG V++RQ+L+D V Sbjct: 123 SRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLV 182 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W +RTVD H++ +R KL + T G+GY L Sbjct: 183 WGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYL 225 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 133/225 (59%), Gaps = 7/225 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +++DE+ IAD L L+++G V G ++KA K++PD+++LD+ +PDI G+E+ Sbjct: 4 ILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKA-KEMPDLIVLDIMMPDIDGYEV 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR++ P++FL+A+ E+DR+ G +G DDYV KPFS +E+ AR+ LRR K+ Sbjct: 63 CRKIRDT-VICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKRA 121 Query: 126 -----STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 ++ + ++ + ++ P+ LT+ EF +L+ L PG+V+S++Q+ Sbjct: 122 ILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQIY 181 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 + VW + TV HIK +RAK+ ++PD I T G+GY Sbjct: 182 EKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYK 226 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 L+EDE +A LV L+Q+G+AV+ G + A D++ILD+ LP + G ++CR Sbjct: 5 LIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGLDVCR 64 Query: 68 QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFST 127 L A +P L +L LTAR + +R++GL+ GADDY+ KPF E+ AR+R LLRR Sbjct: 65 YLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRR--DLRV 122 Query: 128 PSPVIRIGHFELNEPAAQISWFDTP-LALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWED 186 P+++ +L +PA Q W + L LTR EF +L L++ G V +++ L++ VW+ Sbjct: 123 RQPLLQYRDLKL-DPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWDG 181 Query: 187 AQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + TV HI LR KLR I T G+GY L Sbjct: 182 TVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 TV +VED+ I L L G+ V G + +A + PD+++LDV LPD GF Sbjct: 11 HTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGF 70 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 L R+L A PVLFLTAR+ DR+ GL G DDYV KPF +EV RVR +LRR Sbjct: 71 RLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAG 130 Query: 124 KFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 ++ +PV +R L+E ++ +PL L+ EF LL L P RV + +++ Sbjct: 131 APASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEIL 190 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKL-RAINPDLSPINTHRGMGYSLR 227 VW R VDT++K LR KL P L ++T RG+GY LR Sbjct: 191 QRVWRYDFSGDTRIVDTYVKNLRRKLDHGGAPAL--LHTVRGVGYCLR 236 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L ED+ G+ TL LQ EG+AVE + G L +A Q D+++LDV LP SGF++ Sbjct: 5 ILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFDV 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-K 124 C++L +P+L LTAR E VD+++GL+ GADDY+ KPF E+ AR+ LLRR + Sbjct: 65 CKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPVR 124 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S + ++G ++ A+++ P+ L+ E+ LL L+ G +R+ L+ VW Sbjct: 125 RSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQVW 184 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDL-SPINTHRGMGYSL 226 + T RTVD H+ LR KL NP + T RG+GY L Sbjct: 185 GYSATTDTRTVDVHVAWLRQKLEE-NPKYPRYLQTVRGLGYKL 226 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ +V+DE I + Y L+Q + V + GL ++ +K + D +I+D+ LP + G Sbjct: 3 KTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGI 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E +Q+ +P++ LTA++ +VD++LGLE+GADDY+ KPFSP+E+ +R++ +LRR Sbjct: 63 EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122 Query: 124 K---FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + + P ++ + ++ + + + LT EF LL+ L K+ +V SR Q++ Sbjct: 123 RAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQIL 182 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + VW R VD HI LR KL I T RG GY Sbjct: 183 EKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 129/231 (55%), Gaps = 11/231 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKA-----RKQVPD-----VMILD 54 + ++EDE I +T+V LQ+EG+ V G L+ R+ P+ ++ILD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 55 VGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCAR 114 V LP I+G +LCR + +P+L ++A+ E+DR++GLEIGADDY+AKPF RE+ AR Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 115 VRTLLRRVK-KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R LLRR + + +T PV+R L + + L L+ E+ LL+ ++ P RV Sbjct: 143 CRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRV 202 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 W R+QL+D VW +TVD HI+ LR K+ I T RG GY Sbjct: 203 WPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGY 253 >UniRef50_D1U362 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U362_9DELT Length = 236 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 129/230 (56%), Gaps = 14/230 (6%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V L++D+ +A+ L L+ EGFA++ G L +AR ++ILDV LPD SGF + Sbjct: 4 VLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTSGFNV 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV--- 122 +L A+PV+ LT R EE+DR++GLE+GADDYV+KPF RE+ AR+R +LRRV Sbjct: 64 LSRLRG-DSAVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLRRVGPE 122 Query: 123 ------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 ++ P I++G +N A Q++ D P+ LT EF L++ L + G + R Sbjct: 123 RGDGDPQQPPRPQGDIKVGEILINRGAQQVTLSDAPVHLTSTEFGLIEQLALNLGNIVQR 182 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + LM+ D D ++ H+ LR KL + I T RG GY L Sbjct: 183 EDLMEKALGRDTDFDDYVLNVHMSNLRRKLGG----HASIKTIRGRGYLL 228 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 130/224 (58%), Gaps = 4/224 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFA-VEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +++DE+ I + + +L +EG V L + ++ PD++ILD+ LPD G++ Sbjct: 40 VLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGYD 99 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C+Q+ + +P++FL+A+ EE D+++GL IG DDY+ KPFSP+EV RV+ LRRV Sbjct: 100 ICKQIRDI-SHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158 Query: 125 F--STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 S +I+ G FELN+ A+++ + + LT E +L+ L+ P RV S++ L + Sbjct: 159 LQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQA 218 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW + D TV HI+ LR K+ + T +G+GY Sbjct: 219 VWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 262 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQ+ + L+ED Q I + L+ + V G L Q D++ILD+ LP + Sbjct: 1 MQKR-ILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSM 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G ++C+ L A + P+L LTA+ E DR++GLE GADDY+ KPFS RE+ ARV+ LR Sbjct: 60 DGLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLR 119 Query: 121 RV---KKFSTPSP--VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R +K STP + G +++ +++ D + LT EF LL + PG+V+S Sbjct: 120 RTDMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFS 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R++L+D+VW Y+ TV++HI LR KL + + T G+GY Sbjct: 180 REKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 132/229 (57%), Gaps = 15/229 (6%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + ++EDE IA+ L + L+ G+ V G L + + PD+++LD+ LP +SG ++ Sbjct: 5 IVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGTDV 64 Query: 66 CRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 C+ + +P++ LTAR +EVDR+LG E+GADDYV KPFSPRE+ R++T+LRR Sbjct: 65 CKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR-- 122 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWF-----DTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + + ++ H++ + AA + LT EF L +++ G+V SR+Q Sbjct: 123 ---NVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+ + W + Y RTVDTH++ LR KL P + T RG+GY ++ Sbjct: 180 LLSNAWGYEFEGYSRTVDTHVRRLRKKL---GPYADWLETVRGIGYRMK 225 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE+ I L L++ F++E+ G L K + PD++ILD+ LP+ISG E+ Sbjct: 5 ILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEEV 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C Q + P+L LTA+ E D++ G GADDY+ KPFS RE+ AR++ +LRR + Sbjct: 65 C-QKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQK 123 Query: 126 STPSP--VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + + V + G +++ ++ LTR EF +L TL+++PG+V++R+QL V Sbjct: 124 AEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKKV 183 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 YDRT+D HIK +R KL L I T G+GY G Sbjct: 184 MGLEYKGYDRTIDAHIKNIRKKLNLEKNQL--IITVYGVGYKFEG 226 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 130/228 (57%), Gaps = 9/228 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE IA+ + L G+ VE + + Q+P+++ILD LP SG + Sbjct: 5 ILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSGVQF 64 Query: 66 CRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ++L + ALP+L LTA+SEE D++LGL+ GADDYV KPFSP+E+ ARVR +LRR Sbjct: 65 AKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLRRQM 124 Query: 124 KFSTPSPVIRIGHFELNEPAAQI--SWFDT---PLALTRYEFLLLKTLLKSPGRVWSRQQ 178 P + +G +L+ + ++ +W + +AL EF LL+ + +P RV SR Sbjct: 125 PIEDTGP-LTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHSRAS 183 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D VW +RTVD HIK LRA L + D I T RG GY + Sbjct: 184 LLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCDRY-IETVRGSGYRI 230 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 125/234 (53%), Gaps = 16/234 (6%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 + +DE+ I D L++EG V V E G + ++ PD+++LD+ +P + G E+C Sbjct: 7 VADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLEVC- 65 Query: 68 QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFST 127 L+ P++ LTAR EE DRLLGL +GADDY+ KPFSPRE+ RV +LRR S Sbjct: 66 DLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWRSE 125 Query: 128 PSPVIRIGHFELNEPAAQ---------------ISWFDTPLALTRYEFLLLKTLLKSPGR 172 SP R E + Q +S ++ + LT EF LL L PG+ Sbjct: 126 ASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMYPGK 185 Query: 173 VWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 V+SR QL++ VW+ A D TV H++ LR K+ D + I T G+GY L Sbjct: 186 VFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_Q3ATG7 Two component transcriptional regulator, winged helix family n=12 Tax=Chlorobiaceae RepID=Q3ATG7_CHLCH Length = 253 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 127/229 (55%), Gaps = 6/229 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VED+Q +A + Y L + G+ + + + ++ +++LDV LP + Sbjct: 18 MSEPLLLVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVMLPGM 77 Query: 61 SGFELCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 GFELCR + H LP++ +TA+ EE+DR+LG E+G DDYV KPFS RE+ R+R + Sbjct: 78 DGFELCRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAI 137 Query: 119 LRRVKKFSTPS-PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 L+R ++ S + V+ G E++ ++ L LT EF LL LLK G SR+ Sbjct: 138 LKRERRQSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRE 197 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+ VW+ + RT+DTHI +R KL + I T RG+GY L Sbjct: 198 TLLSDVWDIDKSISTRTIDTHITRIREKLGNYG---ALIKTVRGLGYRL 243 >UniRef50_B1C8W4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8W4_9FIRM Length = 226 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 7/224 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V ++EDE +A LV +L++ + G L ARK V DV++LD+ LP+I GF + Sbjct: 3 VLIIEDEVNLALPLVALLEKNKILADTVADGTSGLMLARKPVYDVIVLDIMLPEIDGFTI 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 + L H P+L LTA DR+ GL +GADDY+ KPF +E+ AR++ L RR Sbjct: 63 LKTLREEHNNTPILLLTALDNIDDRVKGLNLGADDYLTKPFDTKELIARIKALSRR-GSG 121 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S V+ IG+ LN A +S D LT+ E LL+TL+K+ V S+ ++D VW Sbjct: 122 SITEEVLHIGNVSLNVNNASLSIGDREETLTKKEANLLETLMKNKDNVLSKDYILDKVW- 180 Query: 186 DAQDTY--DRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D+Y D +V+ +I LR KL + + D+ + T+RG+GY+L+ Sbjct: 181 -GIDSYAIDNSVEIYIHYLRKKLGS-DADVKIV-TNRGLGYTLK 221 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVP-DVMILDVGLPDISGFE 64 V +VED+ + D + + L +EG E G L+ P D+++LDV LP + G Sbjct: 4 VLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGIS 63 Query: 65 LCRQLLALHP---ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 +CR+L H +PV+ LTAR +E ++GLE+GADDY+ KPFSPR++ +RVR LRR Sbjct: 64 VCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLRR 123 Query: 122 VKKFSTPSPVIRIGHF---ELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + + SP R F E++ +++ + LT EF +L L +PGRV+SR+Q Sbjct: 124 QRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSREQ 183 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 +MD +W R+ D HI+ LR K+ + I T RGMGY Sbjct: 184 IMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGY 229 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 7/221 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVED++ ++D L L+ EG+AV L +MILD+GLPD+ G E+ Sbjct: 3 ILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGLEV 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 RQ ++P L LTAR D++ GL+ GADDY+AKPF +E+ AR+R + RR+ Sbjct: 63 LRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG-- 120 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + S +I IG+ L+ Q++ + L+R EF+LLK L+++ GR+ S+ QL ++E Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + ++ HI LR KL P I T RG+GYS+ Sbjct: 181 WGDELSSNAIEVHIHNLRKKL----PK-DFIKTIRGVGYSV 216 >UniRef50_Q2BDB2 Two-component response regulator n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BDB2_9BACI Length = 226 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 129/223 (57%), Gaps = 3/223 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ LV+DE+ + + L L+ G+ + G + ++ D+++LD+ +P++ G Sbjct: 2 KTILLVDDEERMKNLLALFLEPHGYKCLRAKDGYEAIQLVKRTHVDMLLLDIMMPELDGL 61 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E CR++ +P++ LTAR++ +D + G + GADDYV KPF R + ARV L RR + Sbjct: 62 ETCRKIREF-SNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRRQQ 120 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 VIR G F+L+ + + + ++LT EFLLL+TL+K P RV++R QL+ Sbjct: 121 IQHGAKEVIR-GDFKLDMDSYTLKYKGKAVSLTLKEFLLLETLMKHPERVYTRDQLLAVA 179 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAIN-PDLSPINTHRGMGYS 225 W+ T RTVD+H++ LR KL+ + P + T G+GY Sbjct: 180 WDINASTEIRTVDSHVRNLREKLKGASFPIEEHLATVWGIGYQ 222 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 132/237 (55%), Gaps = 11/237 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M R + +V+DE+ I + + L + GF + GL ++ Q PD+++LD+ LPDI Sbjct: 1 MNRTKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDI 60 Query: 61 SGFELCRQLLA---LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 G E+CR++ +H P++ LTA+SEE D+++GL +GADDY+ KPF RE+ ARVRT Sbjct: 61 DGLEVCRRIRLDERIHQT-PIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRT 119 Query: 118 LLRRV-------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 +LRRV + +T + +I++ ++ + D + T EF +LK L +S Sbjct: 120 VLRRVMDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESL 179 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V SR L++ V + R VD HI+ +R KL N I T RG+GY ++ Sbjct: 180 EHVLSRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKMK 236 >UniRef50_C8X3Y5 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3Y5_DESRD Length = 236 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVEDE+ +A L + LQQEG+ VE G L Q D++ILD+ LP + G+E+ Sbjct: 9 ILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYEV 68 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 R++ A+ P LP+L LTAR+ DR+ GLE GADDY+ KPF +E+ RV+ +L+R + + Sbjct: 69 AREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQWY 128 Query: 126 ---STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + PV+R G +N + LT E ++LK L++ GRV SR++L+++ Sbjct: 129 QDVTQQEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELLEN 188 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW+ RTVD I LR A I + R +GY Sbjct: 189 VWQVEGTVQTRTVDAFIARLRKYFEADPKHPEFITSVREVGYQF 232 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 124/230 (53%), Gaps = 7/230 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 R V +V+DE+ I D + L+ EGF VE G L + PD+++LDV L DI Sbjct: 77 SRVRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDID 136 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF +C +L +P LFLTAR D++ GL +G DDYV KPFS E+ ARVR +LRR Sbjct: 137 GFAVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRR 196 Query: 122 VKKFST----PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 T P+P +R EL+ ++ + LT E+ LL+ LL + V +R Sbjct: 197 AGSPVTGDGHPAP-LRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRA 255 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL+D VW ++T+I LR K+ + P L I+T RG+GY LR Sbjct: 256 QLLDHVWGHDFSGEGGVLETYISYLRRKVDNVEPPL--IHTVRGVGYVLR 303 >UniRef50_A9FLR1 DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FLR1_SORC5 Length = 235 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + ++EDE + L Y L+Q G V + +G + A Q PD+++LD+ LPDI G E+ Sbjct: 4 ILVIEDEPALQKVLDYNLRQAGHEVLLAGQGGEGVRLAVDQRPDLVLLDLMLPDIPGTEV 63 Query: 66 CRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 CR L +PV+ ++AR +EVDR++G E+GA DYV KPFS RE+ RV+ +LRR K Sbjct: 64 CRALQQSDGTQRIPVMIVSARGDEVDRIVGFELGAVDYVVKPFSVRELVLRVQAVLRRAK 123 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 I G ++E A ++ + LT EF LL L ++ RV +R L+D V Sbjct: 124 SSGDGERSIEFGCLRIDEGAHRVWVEREEVELTLLEFKLLVALYEARERVQTRTALLDGV 183 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 W RTVDTH+K LR KLR I T RG+GY Sbjct: 184 WGIDVSITTRTVDTHVKRLRDKLRRAG---DYIQTVRGIGY 221 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 134/234 (57%), Gaps = 6/234 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + T+ +V+DE+ I D + L+ EG+ V E G+ L+ K+ D++ILD+ +P++ Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E C ++ +P++ L+A++E++D++ GL GADDY+ KPF+P E+ ARV++ LR Sbjct: 61 DGIEACTKIRE-EKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLR 119 Query: 121 RVKKFSTPS-----PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R KKF+ + +I I +N ++ + + LT EF +L+ L ++ G V+S Sbjct: 120 RYKKFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFS 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +++ + VW++ D TV HI+ LR K+ + T G+GY + L Sbjct: 180 IEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVEKL 233 >UniRef50_Q12IJ0 Two component transcriptional regulator, winged helix family n=3 Tax=Gammaproteobacteria RepID=Q12IJ0_SHEDO Length = 226 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 132/220 (60%), Gaps = 2/220 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L++D+ G+++ L +L+ EGF++ G LD A KQ D+++LDV LP ++GF+L Sbjct: 4 ILLIDDDHGLSELLAQLLELEGFSLTQAYDGQQGLDNALKQEFDLILLDVMLPKLNGFDL 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK- 124 + L H PVL LTAR +E+DR++GLEIGADDY+ KPF+ RE+ AR+R +LRR +K Sbjct: 64 LKALRQ-HKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRRAQKP 122 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + P ++ G +L+ ++S + + LT EF LL L+K G + S++ L ++V Sbjct: 123 ANEPRDELKCGDIKLDPARQEVSCKEQLILLTGTEFSLLHALIKQAGELVSKETLSETVL 182 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 +DR++D H+ LR K + T RG GY Sbjct: 183 HKKLMPFDRSLDMHLSNLRKKFPERADGRPRVKTIRGQGY 222 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 127/235 (54%), Gaps = 14/235 (5%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + +++DE + D + L ++GF V G L+ PD++ILDV LPD Sbjct: 1 MASEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDT 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G ELC+ L + + P+LFL+ + ++D++LGL +G DDY+ KPFSP E+ AR+ LR Sbjct: 61 NGLELCQNLRKITES-PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLR 119 Query: 121 RVKKFSTPS-----PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + + + ++ I ++ + D P+ LT EF +L L + P V+S Sbjct: 120 RNRILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFS 179 Query: 176 RQQLMDSVW--EDAQDTYDRTVDTHIKTLRAKLRA--INPDLSPINTHRGMGYSL 226 QL D +W ++ DT RTV HI LR K+ NP L I T +G+GY L Sbjct: 180 LTQLYDHIWGVDNIGDT--RTVMVHISNLRKKIEKDPANPKL--IVTIKGIGYKL 230 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 125/219 (57%), Gaps = 7/219 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVED++ + + + L+ EG+ V+ + G L + +++ILD+GLP + G EL Sbjct: 18 ILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLEL 77 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 ++L A +PVL LTAR DR+ GL+ GADDY+ KPF E+ AR+R LLRR F Sbjct: 78 LKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRR--SF 135 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + P PV+ L+ Q+S+ TP+ L R EF+LL LL PGRV +R +L ++ Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 +D ++ HI LR K P+L I T RG+GY Sbjct: 196 WDEDVESNALEVHIHHLRKKF---FPEL--IRTVRGVGY 229 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 12/227 (5%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VED+ I D L ++ VE GL L+KA+ + D+++LD+ +P ++G E+ Sbjct: 10 ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVEV 69 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV--- 122 CR+L P++ +TA++EE+D++LGLEIGADDY+ KPFS RE+ AR + ++RR Sbjct: 70 CRELRKTKNT-PIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 123 --KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + + + + G ++N +++ + L+ EF LL L PGR +SR +L+ Sbjct: 129 NQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELL 188 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDL-SPIN--THRGMGY 224 D +W Y+ TV++HI LRAK I PD+ +PI T G+GY Sbjct: 189 DVIWGYNFSGYEHTVNSHINRLRAK---IEPDMGNPIYILTTWGIGY 232 >UniRef50_C6CHY9 Two component transcriptional regulator, winged helix family n=37 Tax=Gammaproteobacteria RepID=C6CHY9_DICZE Length = 232 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LV+D+ + L L EGF+ G +D A MILD+ LPD+SG ++ Sbjct: 9 ILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDMSGIDV 68 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-- 123 RQ+ + ++P++ LTA+ + +DR++GLE+GADDYV KP PRE+ AR+R +LRR + Sbjct: 69 LRQVRR-NRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYEDK 127 Query: 124 -KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + S + I G ++ W LT EF LL+ L++S RV ++ +L + Sbjct: 128 AEKSEDAGTINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVTKDELSEK 187 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ YDR+VD HI +R KL A++ I T R +GY +R Sbjct: 188 CLGRRREAYDRSVDVHISNIRQKLAALDGCSLTIETVRSVGYRIR 232 >UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 Tax=Bacteria RepID=Q3DDJ6_STRAG Length = 225 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 6/223 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 ++ VED+ I + ++Y LQ GF + F + +++VPD+++LD+ LP G + Sbjct: 2 IYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLTI 61 Query: 66 CRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +L H +PV+ TA+ E D++ GL++GADDY+ KPF E+ +R++ +LRR + Sbjct: 62 LERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRSR 121 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + + + +I IG+ E++ + + LT EF LL ++P RV++RQ+L+D V Sbjct: 122 QVDSKAHII-IGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKV 180 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W + RTVD HI TLR KL D I T RG+GY L Sbjct: 181 WGEQFLGETRTVDVHIGTLRTKL---GEDGYLIATVRGVGYRL 220 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE GIA L L EG+ VEV G+ + R+ D+++LDV LP G E+ Sbjct: 4 ILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGLEV 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L P+L LTA++ E ++++GLEIGADDYV KPF +E+ AR++ LLRR Sbjct: 64 CRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRASG- 122 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 T G E++ ++ + LT EF LL +++ GRV SR QL+ + W Sbjct: 123 DTDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATWG 182 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 T R VD HI LR K+ + + RG+GY G Sbjct: 183 RDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRFDG 225 >UniRef50_C8NR68 DNA-binding response regulator n=12 Tax=Bacteria RepID=C8NR68_COREF Length = 224 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + + ED+ GIAD + L QEGF EV G +A D+MILD+GLP + Sbjct: 1 MATERILIAEDDDGIADFIRRGLVQEGFECEVAVSGAAAFARAHSGDFDLMILDLGLPHM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL- 119 G ++ QL L +LP++ LTAR+ DR+ LE GADDY+ KPF E+ ARV+ L Sbjct: 61 DGADVLEQLRVLKVSLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARVKLRLA 120 Query: 120 -RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 R+ + +T + +++ G EL+ ++ D L+R EF LL+TL++ PG++ SR Q Sbjct: 121 SRQPVERTTNTHLLKHGTLELDLRTQKVFVADKWRDLSRREFDLLETLMRHPGQILSRAQ 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L++ VW+ + D VD +I+ LR K+ + T RG GY L Sbjct: 181 LLNMVWDMSFDPGSNVVDVYIRALRKKIGT-----EKVETIRGSGYRL 223 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 3/221 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L+ED++ + LV LQQ+ + V+ + G L+ A D++++DVGLP + G L Sbjct: 3 ILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGISL 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L + P+L +TA+ +++ GL+ GADDY+ KP E+ AR+R LLRR + Sbjct: 63 CRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE-- 120 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 +P+ ++ +G L+ + ++++ D PL LT E+ LL+ L++P RV+SR +++ +W Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + +V H+K LR +L+ D I GMGY L Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGAD-GWIENVYGMGYKL 220 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 8/125 (6%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ V+D+ + TL +L+ GF++ K PD++ILD+ +P G E Sbjct: 402 TLLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIE 461 Query: 65 LCRQLL------ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 LC + +LP+LFLTAR E GADDYV KP E+ R+ Sbjct: 462 LCHAVRNDPRDGGHWQSLPILFLTAR--ENAAAEVFAAGADDYVVKPIVGPELITRINNR 519 Query: 119 LRRVK 123 L R + Sbjct: 520 LERAR 524 >UniRef50_A8R858 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8R858_9FIRM Length = 219 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 133/228 (58%), Gaps = 15/228 (6%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPD----VMILDVGLP 58 ++ + +VEDE+ I D + L++EG+ V R ++A V D + ILD+ L Sbjct: 2 KKVICVVEDEKAINDLVNQYLKKEGYEV----RSYYTYEEASAHVMDDDVHLWILDIMLD 57 Query: 59 DISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 D SGF+L ++ +PV+F++AR +E DR++GLE G+DDY+ KPFSP+E+ RV + Sbjct: 58 DKSGFDLIEEIRLQGKEIPVIFMSARDKEFDRIIGLEKGSDDYITKPFSPKELVLRVNNV 117 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 ++RV K +T I I +EL+E ++ + LT EF LL +K+ G ++R + Sbjct: 118 IKRVYKDATNR--IMIDGYELDEEQRKVFDHGKEIDLTTKEFDLLMMFIKNKGMAFNRDK 175 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++ SVWE+ DR VD ++ LR KL P+L+ I+T G GY L Sbjct: 176 ILTSVWEENYFGSDRVVDDTLRRLRKKL----PNLN-IHTIYGYGYRL 218 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 134/224 (59%), Gaps = 4/224 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DEQ I D + L+++GF V G LD + +++LD+ LP ++G E+ Sbjct: 7 ILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEEV 66 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV-KK 124 C ++ A+ ++P++ LTA++EE +++ G+ +GADDY+ KPFS RE+ RVR LLRR + Sbjct: 67 CNRIRAV-SSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRD 125 Query: 125 FSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 FS + ++ G E++ + + LT EF +L L +P +V+SR++L++ Sbjct: 126 FSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVEK 185 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + +DRTVD++IK +R K+ + + + + I T GMGY Sbjct: 186 AFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+DE + + L L +EGF V+ G L+ A D+++LD+ LPD+ G+++ Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR---V 122 C+++ + +L LTARSE D++ GL IGADDY+ KPF P E+ ARV +L+RR Sbjct: 76 CKKIRE-KDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + H + ++ D + T+ EF L +L KS R +SR++L++ Sbjct: 135 QSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNL 194 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +W D + R VDTHIK +R K + +PI T G+GY G Sbjct: 195 IWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNG 240 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 135/231 (58%), Gaps = 13/231 (5%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFE---RGLPVLDKARKQVPDVMILDVGLPDISG 62 + +++DE I D +L++EGF V+ E RG+ L+ R PD+++LD+ LPD SG Sbjct: 4 ILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFR---PDLVLLDLMLPDCSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++LC++++ +PV+ ++A+ E +D++LGLE+GA+DY+ KPF RE+ AR++ +LRR Sbjct: 61 YDLCKEIVK-QSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRY 119 Query: 123 K-----KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + K+ + ++ G E+N + T + LT E+ +L+TL K P ++++R Sbjct: 120 EHNDEAKYEYTTKLV-CGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRD 178 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +L++ VW R+VD I LR K+ + + T G GY L G Sbjct: 179 ELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGG 229 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 3/225 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVED+ +A + L ++ + V++ G + D+++LDV LP + G L Sbjct: 3 ILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGISL 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CRQL + +L LTA+ + D+++GL+ GADDYV KPF +E+ AR+R LLRR Sbjct: 63 CRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN-- 120 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + PV+ G L+ ++++ D L LT EF LL L++ R++SR ++D +W Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 186 DAQD-TYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +D + T+ +HIK+LR KL+ + I T GMGY L+ L Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKAL 225 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VED+ I + L+ G ++ E D + PD++ILD +P I+G EL Sbjct: 500 IMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIEL 559 Query: 66 CRQLLALHPA---LPVLFLTAR--SEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 C Q++ P LPV+F+ ++ V+++ IGADD V+KP + A + + Sbjct: 560 C-QVVRNDPCWKLLPVVFVVDNLSADIVEQIFA--IGADDCVSKPIVSSTLIACILNRME 616 Query: 121 RVK 123 R K Sbjct: 617 RNK 619 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+++TV +V+DE+ + + L+ F+ E G L + DV+++DV +P + Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GF LC ++ +P+LFLTAR +E D++ GL++G DDY+ KPFSP E+ AR+ ++R Sbjct: 61 DGFTLCARIRE-QSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMR 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + + G ++E +++ P+ LT EF LL L K G+V+SR+ L+ Sbjct: 120 RAYHNKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW RTVDTHIKTLR KL+ + I T G+GY Sbjct: 180 AQVWGYDYTGNARTVDTHIKTLRMKLKQAS---DFIQTVWGIGYKF 222 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 139 bits (350), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 120/220 (54%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 TV LVED+ IA L L EG+ V V E G L AR D++I+DV LP ++GFE Sbjct: 18 TVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFE 77 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 L R L LPV+ L+AR E+D+++GLE+GA+DY+ KPFS E+ ARV+ +LRR Sbjct: 78 LLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAI 137 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 +R G +N ++ D + LT EF +L L ++ GRV SR+Q+ VW Sbjct: 138 ARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVW 197 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 RT+D I LR KL + T RG+GY Sbjct: 198 GPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGY 237 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 139 bits (350), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 130/240 (54%), Gaps = 23/240 (9%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + +D++ + L+ + E F V + G L + ++ PD+M+LD+ +P I Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFE+CR+ +P++FL+A+ +E DRL+GL +GADDYV KPF RE+ ARV++ LR Sbjct: 61 DGFEVCRRARQF-TDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLR 119 Query: 121 R--------VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGR 172 R V + I FE+ A IS LT EF LL L +P R Sbjct: 120 RRRGEVLSQVASYEIRDLFIDKERFEVRRKKAWIS-------LTPTEFSLLDILASAPDR 172 Query: 173 VWSRQQLMDSVWEDA-QDTYDRTVDTHIKTLRAKLRAINPDLSP---INTHRGMGYSLRG 228 V+SR QL++ A + +RT+DTHI+ LR KL PD S I T G+GY +G Sbjct: 173 VFSRMQLLEKAMGGAYYEGAERTIDTHIRNLRKKL---EPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged helix family protein n=2 Tax=Marinobacter RepID=A3JEV6_9ALTE Length = 228 Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V L+ED+ + L L +GF V G L AR + D+++LD+ LPDI+G ++ Sbjct: 5 VLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDINGLDV 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV--K 123 RQL + LPV+ LTA +E DR++G E+GADDY++KP +PRE+ AR+ LLRR+ Sbjct: 65 LRQL-RVSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIAWD 123 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + + G L ++ TPL LT E+ +L+ LL G V + LM Sbjct: 124 QKADLDDSRSYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKTDLMQWA 183 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +TYDRT+D HI LR KL P I T RG+GYS R Sbjct: 184 LGRRLETYDRTLDMHISNLRKKLGNEEP--PRIETVRGLGYSYR 225 >UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0H8_9GAMM Length = 241 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ E + +VED++ I + L V+ L K K +++LD+ LP + Sbjct: 1 MRHEKLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G LCR++ +P V+ LTA S ++DR++GLE+GADDY+ KPF RE+ ARV+T LR Sbjct: 61 DGLSLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLR 120 Query: 121 RVKKF----STPSP------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 + +T P +++G + + Q+ + + LT EF LL + P Sbjct: 121 HRAQLLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHP 180 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V+SRQQL+D VW Y+ TV++HI LRAKL ++ I T G+GY L Sbjct: 181 NHVFSRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLE-LHQSTPIIETVWGVGYKLN 236 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 129/229 (56%), Gaps = 7/229 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + + +V+D I + + L QEG+ + V G + + VPD++ILDV +P G Sbjct: 5 QHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGL 64 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 LCR + + PVLFL+AR+E++D +LGLE+G DDY+ KPF+PRE+ ARV+ LLRR Sbjct: 65 SLCRHIRS-RSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRAT 123 Query: 124 KFSTPSP-----VIRIGHFELNEPAAQISWFD-TPLALTRYEFLLLKTLLKSPGRVWSRQ 177 S + IR G + LN ++ D ++L+ EF LL LL+ PG + +R Sbjct: 124 PASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRD 183 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +L++ V A + +DR++D I LR K+ + I TH G GY+ Sbjct: 184 ELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAF 232 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 133/224 (59%), Gaps = 5/224 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L+ED++ +A L+ L Q+ +AVE+ E G + A+ D+++ DV LP + G L Sbjct: 3 ILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGITL 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C++L + + P+L +TA+ E DR+ GL+ GADDY+ KP + RE+ ARVR LLRR Sbjct: 63 CQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRR---G 119 Query: 126 STPS-PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 TP PV+ +G L+ ++++ + L LT E+ LL+ LL++P RV+SR +++ +W Sbjct: 120 DTPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + TV +HIK LR KL+ + + I G+GY L+ Sbjct: 180 TFDDPPQEETVKSHIKGLRHKLKVVGA-VDWIENVYGLGYRLKS 222 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 7/138 (5%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+D+ I L ML+ G + + L + + PD++ILDV +P ISG E Sbjct: 501 NVLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIE 560 Query: 65 LCRQLLALHPA---LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 LC Q + P LP++FLTA E G DDYV KP E+ AR+ L R Sbjct: 561 LC-QAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLER 619 Query: 122 ---VKKFSTPSPVIRIGH 136 ++ ST P+ + + Sbjct: 620 SRLLQSLSTKDPLTGLAN 637 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M V +VEDE+ I D + L+ +G+ V G+ L+ Q + I+D+ +P + Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G + +L + PV+ LTA+SEE+D++LGL IGADDYV KPF+P E+ ARV + LR Sbjct: 61 DGITMVMKLRENYD-FPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLR 119 Query: 121 RVKKF-------STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R K+ S + IG ELN ++ + +T EF +L+ L+K+PGRV Sbjct: 120 RYSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRV 179 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +S +++ + VW + D TV H++ +R K+ + + G+GY + Sbjct: 180 FSAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIE 232 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 14/232 (6%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK--------QVPDVMILDVGL 57 + +VED+ +AD L L+ EG+ V V G+ L+ AR V++LD+ L Sbjct: 3 ILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDLML 62 Query: 58 PDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 P ++G E+C+ L A PVL LTA DR+ GL GADDY+ KPFS E+ AR+ Sbjct: 63 PKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARIEA 122 Query: 118 LLRRVKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 LLRR + P+ ++ G+ EL+ ++S + LT E LL+ L SPGRV SR Sbjct: 123 LLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVLSR 182 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSP--INTHRGMGYSL 226 ++++ +VW +D VD +++ LRAK I+P L+ I T RG+GY L Sbjct: 183 ERILSNVWGVDEDPLTNVVDVYVRRLRAK---IDPPLASSFITTVRGLGYRL 231 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 129/229 (56%), Gaps = 11/229 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ +VEDE+ + L L +EGF + G + D+ ++DV +P + GF+ Sbjct: 3 TILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGFD 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 ++L LPV+FLTARS+E DR+ GL +G DDY++KPFS E+ AR++ +LRR + Sbjct: 63 FVKKLRET-STLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTYQ 121 Query: 125 FS-------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + ++ + +LN A + P++LT EF LL L + G+V++R+ Sbjct: 122 RNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTRE 181 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+ SVW + +RTVDTHIKTLR KL+ P + I T G+GY L Sbjct: 182 HLLTSVWGLDYEGTERTVDTHIKTLRMKLK---PYGNVIQTVWGIGYKL 227 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 121/223 (54%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + ++EDE + L L+ EG+ V G L + + PD+++LDV +P + GF L Sbjct: 4 ILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFAL 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C +L L +P+L LTA+ + DR+ GL+ GADDY+ KPFS E+ ARVR +LRR ++ Sbjct: 64 CAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQRE 123 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 +R G E++ L T E+ +L+ L ++PG SR++ +D VW Sbjct: 124 KRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVWG 183 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 A RTVD HI +LRAK+ + I T G+GY L G Sbjct: 184 YAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_D0RQG1 Regulatory protein BvrR n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQG1_9RICK Length = 233 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ LV+D++ I ++ L+ EG+ V+ + G + PD+ I+D+ +P ++G Sbjct: 3 KTIALVDDDRNILTSVSIALENEGYKVQTYVDGESAYIGITRTPPDLAIIDIKMPRMNGE 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKP--FSPREVCARVRTLLRR 121 EL ++L LPV+FLT++ EEVD LLGL++GADDYV K FS + RV+ R+ Sbjct: 63 ELLKKLRK-KTNLPVIFLTSKDEEVDELLGLKLGADDYVKKSGGFSINVLIERVKVQFRK 121 Query: 122 VKKFSTPSP-VIRIGHFELNEPAAQISWFDT--PLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + + S +I+ G L+ + +W D P LT EF ++ L K PG + R Sbjct: 122 KDQVTPDSKNIIKQGKLMLDPEQLECTWDDQNLPDKLTTTEFQIVYELAKRPGVIKERSH 181 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 LM +++ D DRT+D+H+K +R K + ++ + S I T G GY Sbjct: 182 LMTIAYKENNDIEDRTIDSHVKRIRKKFKKVDKEFSAIETRYGSGY 227 >UniRef50_A7VHB9 Putative uncharacterized protein n=5 Tax=Firmicutes RepID=A7VHB9_9CLOT Length = 236 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 8/224 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 +++VED+ I + ++ L+ G+ E F + +++PD+++LD+ LPD G E+ Sbjct: 17 IYIVEDDMNIQEIEMFALKNTGYVTEGFANAKSFFSRMTEKIPDLILLDIMLPDQDGLEI 76 Query: 66 CRQLLALHPA---LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 R+L P +P++ +TA++ E+D++ GL+IGADDY+ KPF E+ +RV+ LLRR Sbjct: 77 VRKLRE-RPETVRVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRS 135 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 K ++R+ + L+ + D P LT EF LLK L+ + G V R+ +M Sbjct: 136 KSIQ-EDQILRLKNVTLDSEKRIVHVNDIPCELTFKEFELLKLLMINAGIVLRREVIMMD 194 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW + RT+D HIKTLR KL + I T R +GY + Sbjct: 195 VWGTDYEGESRTLDMHIKTLRQKLGDAG---NMIKTVRNVGYKM 235 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE I + + ++L+Q GF E +++ + PD+++LD LP SG + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 Query: 66 CRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 + L ++ +PV+ LTAR EE DR+ GLE GADDY+ KPFSP+E+ AR++ ++RR+ Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + VI + L+ + ++ + PL + EF LL + P RV+SR+QL++ V Sbjct: 125 PMAV-EEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 W DRTVD HI+ LR L D + T RG GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRM-VQTVRGTGY 223 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 138/249 (55%), Gaps = 36/249 (14%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVEDE IA + + L +EG+ VE G +K + D++ILD+ LP + G E+ Sbjct: 4 ILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLEV 63 Query: 66 CRQL---LALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR-R 121 CR++ +LH +PV+ LTA+S+E+++++GLE+GADDYV KPFSPRE+ ARV+ LR R Sbjct: 64 CRKIRGNSSLH--IPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121 Query: 122 VKKFS----------------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKT 165 K+ + V + G + + + L LT EF LL Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181 Query: 166 LLKSPGRVWSRQQLMDSVWEDAQDTYD-----RTVDTHIKTLRAKLRAIN--PDLSPINT 218 ++ + G+V +R++L++ +W YD RTVD HI+ LR K+ PDL + T Sbjct: 182 MVTNSGQVLTREKLLEKIW-----GYDFLGDTRTVDVHIRHLRQKISEAGGPPDL--VET 234 Query: 219 HRGMGYSLR 227 RG+GY L+ Sbjct: 235 VRGIGYRLK 243 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 134/223 (60%), Gaps = 6/223 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+D+Q + + + ++EGF V + G VL ++ PDV+ILD+ LP G L Sbjct: 7 VLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLSL 66 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L A+ +P++ LTA+ EE DR+LGLE+GADDYVAKPFSPRE+ AR++ +LRR + Sbjct: 67 CRRLRAVR-MIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRR-SQA 124 Query: 126 STPSPVIRIGH--FELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + P+ ++ + E+ ++ +T EF LL L ++P RV++R++L+ +V Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W RTVD HI+ LR KL ++ + + T G+GY Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPHEY--LQTVWGVGYKF 225 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 124/219 (56%), Gaps = 7/219 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVED+ + D +V L+ G+ V+ ++GLP L + + +ILD+ LPDI G L Sbjct: 3 ILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGISL 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 R+L LPVL LTAR DR+LGL+ G+DDY+ KPF+ +E+ AR+R L+RR K Sbjct: 63 LRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK-- 120 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 V+ G +L + Q+++ P+ LT +E+ LL+ L+ GRV S+ QL S++ Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + V+ HI LR K + DL I RG+GY Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYS---DL--IRNIRGVGY 214 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 +V ++ED+ IA+ + +++ G+ +V G L+ + PD + LD+ LP I G+E Sbjct: 7 SVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWE 66 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC+++ + +P++ LT + E D++ GL+IGADDYV KPF P E+ AR++ ++RR Sbjct: 67 LCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADL 126 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + V+ + +++ + + D + + E LL L P +V++RQQL+D +W Sbjct: 127 LNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIW 186 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 A + RT+D HIK +R KL + + I T RG+GY Sbjct: 187 GYAFEGDPRTIDVHIKRIREKLTEADAKWT-IKTIRGVGYKF 227 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + ++ED++ IA L L+ + V++ G+ + A+ D+++LD+ LP + G L Sbjct: 3 ILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGITL 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C++L A + +L LTAR ++++GL+ GADDY+ KPF E+ AR+R L RR ++ Sbjct: 63 CKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQE- 121 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 T ++ G +L+ +++ + PL+LT E+++L+ LK+P +V +R ++D +WE Sbjct: 122 -TRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + + TV THI LR KLRA+ I T G+GY L Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 123/234 (52%), Gaps = 18/234 (7%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V VED+ I + L+++GFAV GL L+ R PD+ +LDV +P + G L Sbjct: 7 VLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDGVSL 66 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR++ +PV+ L+AR++ +D +LGLE GADDYV KPF + AR+R +LRR Sbjct: 67 CRRIRD-ESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125 Query: 126 STPSP------------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 S P+ V+ G E++ ++ P+ALT E LL +PG V Sbjct: 126 SGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGTV 185 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 SR +L++ VW+ R VD H++ LR K I D I+T RG GY L+ Sbjct: 186 LSRDKLLERVWDYGWGGDTRVVDVHVQRLRTK---IGQDR--IDTVRGFGYKLK 234 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 126/229 (55%), Gaps = 3/229 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + T+ + +DE+ IAD L L+Q GF V + G VL + P ++ILD+ LPDI Sbjct: 3 RHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIP 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C + A A+P+L LTA+ + DRL GL+IGADDYV KPF+P EV ARV+ +LRR Sbjct: 63 GEEVCMAVRA-RSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRR 121 Query: 122 VKKFSTPSPVI--RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + R G ++ + + LT E+ LL L + P RV+SR++L Sbjct: 122 TMLDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREEL 181 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 ++ V+ RT+D H+K LRAK+ I T GMGY G Sbjct: 182 IERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGG 230 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 8/230 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 ET+ ++ED++ I+ L L +EG+ V + G L + P ++++D+ LP + GF Sbjct: 14 ETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGF 73 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+CRQ+ +P++ ++AR ++D++ L +GADDY+ KPFSP E+ ARV++ LRR Sbjct: 74 EVCRQVRQ-QSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYH 132 Query: 124 KFS---TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 +++ V+ +N + PL LT EF LL TL ++PG+V+S++QL Sbjct: 133 RYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLY 192 Query: 181 DSVW--EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + VW +DA D RTV HIK +R KL + I+T G+GY G Sbjct: 193 NRVWKQDDADDI--RTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIG 240 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 129/235 (54%), Gaps = 16/235 (6%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M V + +D+ + + + +++ + G L+ K+ PDV+ILDV +P + Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFE CR++ P++ LTA+ EE DR+LGLE+GADDYV KPFSPRE+ AR+R ++R Sbjct: 90 DGFEACREIRKKWDT-PIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMR 148 Query: 121 RVKKFSTPSP------VIRIGHFE---LNEPAAQISWFDTPLALTRYEFLLLKTLLKSPG 171 R++ P P +R FE ++ ++ ++ EF LL L+KSPG Sbjct: 149 RLQ----PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPG 204 Query: 172 RVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VWSR+QL++ VW RT+D HIK +R +L + D I T G+GY Sbjct: 205 SVWSREQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYDC--IQTVWGIGYKF 257 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ +V+DE I + L+ G+ V G L A + PD+++LD+ LP + G E Sbjct: 4 TILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGME 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + +L +L LTARS+E+DR+ GL +GADDY+ KPFSPRE+ ARV +LRR + Sbjct: 64 ITARLREKSDVF-ILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S V+R H E++ A + L LT EF LL L ++ RV SR+ L++ VW Sbjct: 123 KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVW 182 Query: 185 EDAQDTY--DRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 D Y DR VD ++ +R K+ A+ + + I T RG+GY Sbjct: 183 --GADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGY 221 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 2/227 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + +V+DE I D L L+ G+ V G + + PD++I+DV LPD+ Sbjct: 25 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 84 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SGF ++L PV+FL+AR D++ GL +G DDYV KPFS E+ ARV +LR Sbjct: 85 SGFAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILR 144 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R K IR+G +++ + ++ + L+ EF LL+ + +P RV S+ Q++ Sbjct: 145 RT-KIDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQIL 203 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW+ D V+++I +R KL A + + + I+T RG GY +R Sbjct: 204 GHVWDYDFDGDSSIVESYISYIRRKLAAYSSE-TIIHTKRGFGYIMR 249 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/233 (39%), Positives = 129/233 (55%), Gaps = 16/233 (6%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +E V +V+DE I L L G+ V G L+ +++PDV+ILD+ +P + G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + +C+++ +P++ LTA + DR+ GLE+GADDYV KPFSP+E+ AR+R +LRR Sbjct: 74 YGVCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT 132 Query: 123 KK--FS---TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K FS T S +I ++ QI + + LT EF LL+ L+ G+ +SR Sbjct: 133 NKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRA 192 Query: 178 QLMDSVW----EDAQDTYDRTVDTHIKTLRAKLRA--INPDLSPINTHRGMGY 224 ++ VW E DT R VD HI LRAKL NPDL I T RG GY Sbjct: 193 DILQEVWGYTPERHVDT--RVVDVHISRLRAKLETDPSNPDL--ILTARGTGY 241 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 +V+D+ I + LQ+EG+ E + ++ PD+ +LD+ LP ++G+E CR Sbjct: 8 IVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGYEFCR 67 Query: 68 QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFST 127 ++ A P++ ++AR EEVD++LGLE+G+DDY+ KPFSPRE+ ARV L+R K+ + Sbjct: 68 RIRA-GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQMKS 126 Query: 128 PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDA 187 + I L++ + F + +T EF +L L + P R +SR +L+ +W Sbjct: 127 HAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLSLIWGFD 186 Query: 188 QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 DR VD I+ +R KL I P+ T G GY LR L Sbjct: 187 YFGSDRVVDDLIRRIRKKLDKI-----PLETVWGFGYRLRTL 223 >UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9A4_9FIRM Length = 226 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 +++VED+ I++ L L+ + V+VFE ++ +++ P +M+LD+ LP +SG + Sbjct: 5 IYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMSGIDA 64 Query: 66 CRQLLAL--HPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 + L + ++P++ L+A+S E+D++ LE+GADDYV KPFS E+ +R++++LRR Sbjct: 65 LKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVLRR-- 122 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + ++ +++ +S + LT+ E+ +L +L++ GRV +R++L++ V Sbjct: 123 SYKVEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELLNEV 182 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W + RT+D H+KTLR K+ + + I T RG+GY L Sbjct: 183 WGYDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIGYKL 225 >UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1L3_THERP Length = 224 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VED+ IA L L+++G V G L + ++ PD++ILD+ LP G ++ Sbjct: 4 ILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHGRDV 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR L H A P+L LTA +E D + GL++GADDYV KPF P E+ ARVR LLRR Sbjct: 64 CRALRLRH-ATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRRAS-- 120 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 P + G ++ A + D P+ L EF LL L+ GR+ SRQ+L+ VW Sbjct: 121 GPPVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRIISRQRLLQQVWC 180 Query: 186 DAQ-DTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D + D RT+D H+ LR KL+ + I RG+GY L Sbjct: 181 DHEIDEASRTLDVHVNRLRQKLQKSRVRIESI---RGIGYRL 219 >UniRef50_Q0IC97 DNA-binding response regulator n=3 Tax=Synechococcus RepID=Q0IC97_SYNS3 Length = 240 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK-QVP-DVMILDVGLPDISG 62 TV L +DE I L LQ EGF V G+ L K R+ P D+ +LD + I+G Sbjct: 7 TVLLADDEVNIVTLLEMELQAEGFTVVTATDGISALKKLREPDTPVDLALLDWNMAGITG 66 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++CR+L +LPV+ +T+R E DR+ LE GADD+++KPF+ REV ARV+ L+RR Sbjct: 67 LDICRRLRETDVSLPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIRRA 126 Query: 123 ----KKFST--PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 FS S ++ IG LN + T L LT EF LL ++ P + SR Sbjct: 127 TFCKSTFSNEFSSDLLEIGKLALNRAERTCTINGTALILTVREFDLLDCFMRHPRQALSR 186 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL+ VW D + VD ++ LR KL A + I T RG+G++LR Sbjct: 187 GQLIQHVWGDDYFGDENVVDVFVRYLRKKLEAGGSE-RVIQTVRGVGFALR 236 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L +D+ ++D + EG+ V G L+ +PD++ILDV +P++ GFE Sbjct: 4 LLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFET 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV--K 123 +Q+ ++PV+ LTA+ +++DR+LGLE+GADDY++KPF+PRE+ AR++ +LRR + Sbjct: 64 LKQIRN-KSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQE 122 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + P+ I + L + + LT E+ LL+ +L +PG+V ++Q+L + Sbjct: 123 REDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELSEKA 182 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 YDR++D HI LR K+ + I T RG+GY Sbjct: 183 LGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGY 223 >UniRef50_A4VMA3 DNA-binding response regulator n=8 Tax=Pseudomonadaceae RepID=A4VMA3_PSEU5 Length = 225 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L++D+Q + + L+ L QEGF G + P ++LDV LPD SG EL Sbjct: 4 LLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGSGLEL 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 +QL + HP LPVL L+ R E +DR+LGLE+GADDY+AKP PRE+ AR+R +LRR + Sbjct: 64 LKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRSQPA 123 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + PS + +G + S ++LT E +L+ LL G +Q L Sbjct: 124 AAPSQ-LELGDLSYSPARGVASVGGHDVSLTLSEGRILEALLAQAGEPIDKQALAQHALG 182 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSP-INTHRGMGY 224 YDR++D H+ LR KL + D SP I R GY Sbjct: 183 RKLTLYDRSLDMHVSNLRRKL-GPHADGSPRIVALRSRGY 221 >UniRef50_UPI0001C31E43 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31E43 Length = 251 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGL-PDISGF 63 T+ +V+DE + + L +EG V+ G +++A + DV++LDV L +G+ Sbjct: 24 TILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVALGSGPNGY 83 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV- 122 E+CR L A +P++ LTA E D +LGLE GADDYV KPF E+ +R+R +LRR Sbjct: 84 EVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAG 143 Query: 123 -KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + ++ +G L+ ++ P+ +T EF LL+ L+ PGR+ +RQ+L+ Sbjct: 144 PRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLR 203 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSP--INTHRGMGYSLRG 228 ++W D+ R +D H++ LR KL PD SP I T RG GY L+ Sbjct: 204 AIWGDSAYRDPRAIDVHVRHLREKLEP-EPD-SPRHIVTVRGAGYRLQA 250 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 4/223 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VED + +A+ + L+ EGF V++ G LD A D +ILD+ LP +SG E+ Sbjct: 3 ILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIEI 62 Query: 66 CRQLLALHPA-LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 CR L + +P+L LTA +R+ GL +GADDY+ KPF RE+ ARVR L+RR + Sbjct: 63 CRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRNQV 122 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + ++ G +N ++S PL L+ EF LL+ +++PG V+SR+Q++D +W Sbjct: 123 VRQET--LKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 E + VD ++ LR KL+ D I T +GY L+ Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYD-EKIETVHNIGYRLK 222 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + + EDE I +V L++ G+ V E G LD +Q D+++LD+ +P++ GF + Sbjct: 4 ILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFAV 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV--- 122 C Q + + ++ LTAR+ E D+++GL +GADDY+AKPFSP E+ AR+++LLRRV Sbjct: 64 CEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVETL 123 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 ++ P ++ G F ++ A ++ + +T E+ LL +K+ +V SR +L+D+ Sbjct: 124 RRRKQPRELVS-GPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLDA 182 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 VW + +TVD +I+ LR K+ + I T G GY R Sbjct: 183 VWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRN 228 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 125/233 (53%), Gaps = 5/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ V ++ED+ IA+ + L G ++ GL ++ A DV+ILD+ LP + Sbjct: 1 MLQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+C++L H +P+L LT+RSEE D++ L GADDY+ KPFS RE+ ARV +R Sbjct: 61 DGLEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIR 120 Query: 121 RVKKFSTPSPVIRIGHF-----ELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + PS + F L+ +++ + +T EF LL +K+PGR +S Sbjct: 121 RYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYS 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 R +L+D VW + Y+ TV++HI LR K+ I T G+GY Sbjct: 181 RTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFNN 233 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LV+D+Q + L L+ + V++ G + ++ILD+ LP ++G L Sbjct: 3 ILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIAL 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L + + +PVL LTAR D++LGL+ GADDY+ KP E+ AR+R LLRR Sbjct: 63 CRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA-TI 121 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S P PVI G LN +IS+ + L LT E+ L++ ++SP RV+S +++ +W Sbjct: 122 SLP-PVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + D TV HIK+LR KL+ D I G+GY ++ L Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIKSL 224 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ + D+ I + L +L G V+ PD++I+DV +P +G + Sbjct: 487 TIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546 Query: 65 LCRQLLALHP---ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 LC Q++ P LP+L LT ++ R GADD+++KP E+ AR+ + L R Sbjct: 547 LC-QVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHR 605 Query: 122 VK 123 + Sbjct: 606 SR 607 Score = 40.0 bits (92), Expect = 0.057, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 48 PDVMILDVGLP--DISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKP 105 P +++L++ P + G L + HP +PV+ + RS +DRL +G+ ++ KP Sbjct: 406 PSIILLELNFPKPEEDGLMLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKP 465 Query: 106 FSPREVCARVRTLLRR 121 S ++ V +L Sbjct: 466 MSSHQIVEIVTGILNN 481 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DEQ IAD + L+ EGF + G + ++ ILDV LPDI GF Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC+++ H PV+ LTA+ EE+D++ GL +GADDY+ KPF P E+ ARV+ LRR K Sbjct: 64 LCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122 Query: 125 FSTPSP-----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 +++ P +I L+ + + + ++LT EF +L L + GRV S ++L Sbjct: 123 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182 Query: 180 MDSVWEDAQDTY-DRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW D T + TV HI+ LR K+ I T G+GY + Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKI 230 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ +++D++ + DT+V ML+QEGF G +KA PD++++D+ LP +SG Sbjct: 13 QTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSGT 72 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+C+QL A A P++ L+A +E+D++L LEIGADDYV KPF RE+ AR+R +LRR Sbjct: 73 EICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRAS 132 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + V+ E++ + L LT E+ LL L +P R +R +++SV Sbjct: 133 --TDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNSV 190 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 W RTVD H+ LR KL T G+GY Sbjct: 191 WGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGY 231 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 133/224 (59%), Gaps = 11/224 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+D+ + D + LQ+ G+AVE+ G L ++ PD+++LD+ LP + G E+ Sbjct: 11 VLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLEV 70 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L +PV+ LTA EE DR++GLE GADDYV KPFSPRE+ RV ++LRR + Sbjct: 71 CRRLRE-RGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART- 128 Query: 126 STPS--PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 S P+ V+ G L+ A + + LALT EF LL LL+ PGR +SR +L++ V Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLS---PINTHRGMGY 224 W + + TV H++ LR K + PD + INT G+GY Sbjct: 189 WGWSFGDHS-TVTVHMRRLREK---VEPDPARPVRINTVWGVGY 228 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 R ++ LVED+ + + Q GF VE G L +A + D++ILDV LP + G Sbjct: 24 RRSILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDG 83 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 FE+ RQL A PV+ LTAR + DR+ GL GADDY+ KPF P E+ AR+R +LRR Sbjct: 84 FEVLRQLRK-RSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRT 142 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISW-FDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 P I +PAA+ W + +T EF +L+ L++S GR +R +L Sbjct: 143 GHTDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTA 202 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +++ Y+R++D HI LR KL D S I T RG+GY Sbjct: 203 VLYQRPATPYERSLDVHISHLRKKLE--RDDRSVIRTIRGVGYQF 245 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 2/219 (0%) Query: 9 VEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCRQ 68 V+D+ I L + L +EGF V G L KAR+ PD++ILD+ +P + GFE ++ Sbjct: 8 VDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFETYQK 67 Query: 69 LLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFSTP 128 L A +P++ L+AR+EEVDR++G +G DDY KPFSP E+ RV+ +LRR+ + Sbjct: 68 LKA-QREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGEPKVN 126 Query: 129 -SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDA 187 +++ G+ L+ ++ ++ + LT +F LL + +P RV+++ L+D +W+ + Sbjct: 127 LENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIWDSS 186 Query: 188 QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D TV HI+ LR K+ + I T GMGY Sbjct: 187 FYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_A8GHG0 Two component transcriptional regulator, winged helix family n=11 Tax=Enterobacteriaceae RepID=A8GHG0_SERP5 Length = 226 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LV+D+ + L L EGF + G ++ A MILD+ LPD+SG ++ Sbjct: 3 ILLVDDDLELGTMLSEYLTGEGFNATLVLTGKAGVEGALSGDYTAMILDIMLPDMSGIDV 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 R + +P++ LTA+ + +DR++GLE+GADDY+ KP PRE+ AR+R +LRR + Sbjct: 63 LRDVRK-KSRMPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE- 120 Query: 126 STPSPV-----IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 P V I G LN W LT EF LL+ LL++P RV S+ +L Sbjct: 121 -RPDEVDDEIAINFGELTLNPSTRSSEWRGKAFDLTASEFNLLELLLRAPERVVSKDELS 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + ++ YDR+VD HI +R KL A+ + I T R +GY +R Sbjct: 180 EKGLGRPREAYDRSVDVHISNIRQKLGALTDNALSIETVRSIGYRIR 226 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGF-AVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +V+DE+ I + L +L++EGF + G + R+ PD+++LD+ LPD+ G Sbjct: 11 KKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDG 70 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + +C Q+ +P+ FL+A++E++D++LGL IG DDY+ KPFSP+EV +++ RR Sbjct: 71 YSVCEQIRQF-TFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + + G ++E + T L LT EF +L L+K+P +++S+ +L ++ Sbjct: 130 QYKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEA 189 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW + D + H++ LR K+ + + T RG+GY L Sbjct: 190 VWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLN 234 >UniRef50_B3PFT8 AbfR arabinofuranosidase two component system response regulator n=26 Tax=Proteobacteria RepID=B3PFT8_CELJU Length = 232 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L++D++ + L L EGFAV++ G ++ + +++LDV LP SGF++ Sbjct: 4 ILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGFDV 63 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 + +L H PV+ LTA+ + VDR++GLEIGADDY+AKP PRE+ AR+R +LRR Sbjct: 64 LK-ILRQHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRASIA 122 Query: 126 STPSPVIR---IGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 P + G L+ +W + + LT EF +L+ L++ G+V S+ + + Sbjct: 123 EANQPNVERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKDDMTEQ 182 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 YDR++D H+ +R K+ I RG GY L Sbjct: 183 ALNRKLTPYDRSIDVHVSNIRKKIALAGSTKDLIINVRGAGYML 226 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 E + +++DEQ IAD L L+ E + V F + D+ ILD+ LPD++GF Sbjct: 20 EKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGF 79 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 LC QL+ P++ LTA+ EE D++ GL +GADDYV KPF P EV ARV+ LRR K Sbjct: 80 SLC-QLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYK 138 Query: 124 KFSTPSPVIRI-GHFELNEPAAQISWFDTPL-----ALTRYEFLLLKTLLKSPGRVWSRQ 177 K+S +I N+ + + L +LT EF +L LL S G V S + Sbjct: 139 KYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIE 198 Query: 178 QLMDSVWEDAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +L +VW+D + + T+ HI+ LR KL + I T G+GY + Sbjct: 199 ELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_Q2RZP1 PhoP3 response regulator n=2 Tax=Rhodothermaceae RepID=Q2RZP1_SALRD Length = 246 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 3/226 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVP--DVMILDVGLPDISG 62 ++ +VED+ ++ +L+ L+ EG+ V + E G L++A + +P D+++LD LPD+SG Sbjct: 10 SLLVVEDDSELSTSLLLYLESEGYEVTLAETGETALEEATR-LPGYDLIVLDAKLPDLSG 68 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 FE+ RQ PVL LT + ++ G ++GADDY+ KPF E+ AR+ LLRR Sbjct: 69 FEVLRQSRDDGVRTPVLMLTGLGDHEHKMRGFQVGADDYLTKPFETEELVARIDVLLRRE 128 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + + R+G ++ +S P+ LT E+ LL LL+ GR +R+Q++ Sbjct: 129 AEATDETGTFRVGGLRVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRD 188 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 VW+ + RT+D H+ LR + D PI + G+GY L G Sbjct: 189 VWDLPTEVETRTIDRHVNALRDVMDGEAEDEWPIQSVYGIGYKLEG 234 >UniRef50_C9RRV7 Two component transcriptional regulator, winged helix family n=16 Tax=Bacteria RepID=C9RRV7_FIBSS Length = 225 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 8/225 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 +++VED+ + + Y L+ F V FE G + ++ + +VPD+ ILD+ LP G + Sbjct: 2 IYIVEDDAEVREMETYALKSGSFDVMAFECGKVMDEQVKVKVPDLFILDIMLPGEDGLSI 61 Query: 66 CRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ++L +PV+ LTA+ E+D++ GL++GADDY+AKPF E+ +RVR +LRR Sbjct: 62 LKRLRGQENTKNIPVIMLTAKGTELDKVKGLDLGADDYIAKPFGILELISRVRAVLRRSG 121 Query: 124 K---FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + ST S + +G L++ ++ + LT E+ LLK L+ PG V+SRQQ++ Sbjct: 122 RGSSESTESLSLALGGVILDDQRRSVTVDGVAVELTFKEYELLKLLMSRPGTVFSRQQIL 181 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 + +W D RTVD H+KTLR KL A S + T R +GY Sbjct: 182 EKIWGVDFDMDTRTVDMHVKTLRQKLGAHG---SIVQTVRNVGYK 223 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 128/222 (57%), Gaps = 3/222 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +VEDE A L L +EG+AV+V G + +A + D ++LD+ LP + GFE+ Sbjct: 32 VLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGFEV 91 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L PVL LTAR + DR+ GL+ GADDY+ KPFS E+ AR+R L+RR Sbjct: 92 CRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR-GAV 150 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 P+ V+RIG L+ ++ +PL L+ EF LL L++ P V +R ++D VW+ Sbjct: 151 ERPT-VLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 A D VD +++ +R K+ I S I T RG+GY LR Sbjct: 210 FAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRLR 250 >UniRef50_A1SG19 Response regulator receiver n=7 Tax=Actinomycetales RepID=A1SG19_NOCSJ Length = 234 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +VEDE+ IA LV L++EG+ V + G LD P+V+ILD+GLPDI G E+ Sbjct: 9 VLVVEDEEDIAFPLVRTLEREGYDVSWVDSGQKALDTM-ATAPEVVILDLGLPDIDGLEV 67 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+ ++ +TAR+ E+DR++GL+ GADDY+AKPF E+ ARVR LLRR Sbjct: 68 CRRAREAGFEGAIMIVTARAGELDRVVGLDYGADDYLAKPFGLAELQARVRALLRRTSSG 127 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S + + ++ A ++ D + LT EF +L L + +V SR +LM VW+ Sbjct: 128 SATAEGAKPDGLRIDVDARRVYAGDEEVPLTGKEFEVLNILAANRDKVVSRGRLMADVWD 187 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + +T+D I LR KL ++ + RG+G+ L G Sbjct: 188 ENWYGSTKTLDVTIGRLRQKLESVGV-TDRVVAVRGVGFRLEG 229 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 8/229 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 ++ + +++D++ I D + LQ +GF E G + +K PD++ILD+ LPD +G Sbjct: 2 KKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENG 61 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR- 121 ++C++L +P++ LTA+ +EVDR++GLE+GADDY+ KPF+PRE+ AR+ ++ RR Sbjct: 62 LDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRH 121 Query: 122 -----VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 K I+ +FE N + + LT EF LLK +++ + SR Sbjct: 122 EMELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSR 181 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSP-INTHRGMGY 224 Q+M D +DR++D I +R KL +P+ + T G GY Sbjct: 182 DQIMQLAKGKELDVFDRSIDVQISRIR-KLIEEDPNKPKYLKTKWGFGY 229 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +++D++ + L L++ GF V L + PD++ILDV LPD G + Sbjct: 18 VLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLAV 77 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR++ A +P++ LTAR + DR++GLE+GADDY+ KPF PRE+ AR++ +LRR + Sbjct: 78 CREVRA-DSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTR- 135 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + +R+G E+N + L LT EF LL L ++ GRV SR +++D Sbjct: 136 -DDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRG 194 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D YDR++D + LR KL + I T RG+GYS G Sbjct: 195 IDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIG 237 >UniRef50_C4Z6D1 Two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR n=7 Tax=Bacteria RepID=C4Z6D1_EUBE2 Length = 223 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVED++ ++ + +LQ+ ++V+ E G LD + + D +I+D+ +P + G Sbjct: 3 ILLVEDDRSLSRAVSTILQKNNYSVDCVENGQMALDYLEEDIYDAVIMDIMMPVMDGITA 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 + L +PVL LTA++E D++ GL+ GA+DY+ KPF RE+ AR+R L R K+ Sbjct: 63 LKNLRKCGSNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIRVLTRSEKQ- 121 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 VI +G+ LN ++S LT E+ ++ + + +V S + M+ +W+ Sbjct: 122 --QDNVITLGNISLNTTTCELSSPSGSFLLTNKEYQMMLMFMNNKTQVISAEHFMEKIWD 179 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D+ TV T+I LR KL A+ D S I T R MGY L+ Sbjct: 180 SESDSDISTVWTYISYLRRKLEALKSDYS-IATRRNMGYYLKN 221 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 4/222 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+DE+ I L + L Q+ V+ G L+ R D+++LD+ LP + G + Sbjct: 14 VLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLSV 73 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR---V 122 C+Q+ +P++ LTA+ +++D++LGL+ GADDY+ KPF+ EV AR++ +LRR + Sbjct: 74 CQQIREF-SNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + S VI+ G +++ + + D + LT EF LL+ L +PG+V+SR L+ + Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKA 192 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 VW RTVD H++ LR K+ + ++T G+GY Sbjct: 193 VWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGY 234 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 126/232 (54%), Gaps = 10/232 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V LV+DE+ I L Y L +EGF E+ G L A ++ D ++LD+ LP + G E+ Sbjct: 12 VLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEV 71 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C++L + P++ ++A+S+E D++L LE+GADDYV KPFSPRE+ ARV+ +LRR + Sbjct: 72 CKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAE 131 Query: 126 STP------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + P + L ++ L LT E+ LL L+K P +R++L Sbjct: 132 ISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRERL 191 Query: 180 MDSVW--EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 ++ +W + Q+T R VD HI LR K+ I T RG GY + L Sbjct: 192 LERIWGYDFGQET--RLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKEL 241 >UniRef50_C6X1B3 Phosphate regulon transcriptional regulatory protein phoB n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X1B3_FLAB3 Length = 227 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 127/229 (55%), Gaps = 9/229 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + L++DEQ I + L Y LQ+EG+ V + G + KA++ VPD+++LDV +P+ Sbjct: 3 MTQKKILLIDDEQDILEILSYNLQKEGYEVHTAQNGNEGIQKAKEIVPDLILLDVMMPEK 62 Query: 61 SGFELCRQLLALHPALP---VLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 G E C+ L L P L ++FL+ARSEE +L G + GA+DY+ K P+ + ++V Sbjct: 63 DGIETCQDLRKL-PDLQKTLIVFLSARSEEFSQLAGFQAGANDYIVKIIKPKVLISKVNA 121 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 LL+ I G +++ ++S L + EF LL L + +V+ R+ Sbjct: 122 LLQLTSNVYDSKKTITAGDLVIDKDNFRVSKSGQQFLLPKKEFDLLYLLASNTNKVFKRE 181 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++++ VW + +RT+D HI+ LR KL + I T +G+GY L Sbjct: 182 EILEKVWGNDVIVGERTIDVHIRRLREKL-----GIGTIQTLKGIGYKL 225 >UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q488W3_COLP3 Length = 260 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 22/221 (9%) Query: 30 VEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCRQLLALHPALPVLFLTARSEEVD 89 ++ +G L +A + +++LDV LP ISG ++CRQ+ P ++ LT+++ E+D Sbjct: 29 CDICTQGNEALQQALTKDYQLILLDVMLPGISGLDICRQVRQEKPLQSIIMLTSKTSEID 88 Query: 90 RLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFSTPS------------PV------ 131 R+LGLE+GADDY+ KPFS RE+ ARVR+ LRRV + + PV Sbjct: 89 RILGLELGADDYMTKPFSVRELQARVRSQLRRVHAITAKNASEINSLVHEEKPVQESAQL 148 Query: 132 ----IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDA 187 IG ++ Q+++ + + LT EF L+ + P +V+SR QL+D VW Sbjct: 149 DKTSTSIGQLLVDHRFHQVTYKNKAINLTVTEFELIDFFCQHPDQVFSRAQLLDGVWGYH 208 Query: 188 QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + Y+ TV++HI LR+KL + I T G+GY L Sbjct: 209 HNGYEHTVNSHINRLRSKLEEDCTEPKIIQTVWGVGYKLNS 249 >UniRef50_A5EY83 Two component phosphate response regulator PhoB n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY83_DICNV Length = 229 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEV--FERGLPVLDKARKQVPDVMILDVGLPDI 60 ++ + LVEDE I L+Y LQ + +E + +L ++Q+PD+++LD LPD Sbjct: 2 KKRILLVEDEPAIQQLLLYGLQDQYQCIEAGTLAQAKTIL---QQQIPDLVLLDWMLPDG 58 Query: 61 SGFELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 SG ++ L + LPV+ LTAR++E D + GL+ GADDY+ KPFS E+ +R++ L Sbjct: 59 SGIKILEDLRKIETLRYLPVIMLTARADERDIIKGLDYGADDYLTKPFSMAELQSRIKAL 118 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 RR+ + + +N ++ + D L L R EF LL+ L+ P +V SR+Q Sbjct: 119 FRRMPESEEEQSCLSWEDITMNLLTYEVFFQDKLLKLNRREFQLLECFLRHPNKVLSREQ 178 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D W+ +D DR VD I+ LR I+ L P+ + RG+GY L Sbjct: 179 LLDFAWQGEEDIGDRAVDVAIRRLRKAFENIDEQL-PVMSIRGIGYRL 225 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 4/231 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 ++ + V +V+DE I + + L++EG V G L+ + PD+++LD+ LPD+ Sbjct: 2 LEEKKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDM 61 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G E+C ++ +P++ LTA+ +E + GL +GADDY+ KPFSPRE+ AR+ + R Sbjct: 62 TGEEIC-SIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFR 120 Query: 121 RVKKFSTP-SPVIRIGHFEL--NEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 R+ + P S I +L + +I + LT ++ +L TLLK P + ++R+ Sbjct: 121 RLNEEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTRE 180 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +L+ + D D YDR VDTH+K +R K+ D I T G GY G Sbjct: 181 ELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGG 231 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 132/239 (55%), Gaps = 21/239 (8%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M R+ V +V+DE+ IAD L + L++EG+ V G +D ++ PD+++LD+ LP Sbjct: 1 MARKVV-VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGR 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+CR++ + +P++ LTA+ E+D++LGLE+GADDYV KPFS RE+ ARV+ LR Sbjct: 60 DGMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 121 RVKKFSTP-------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R +S P + I I + A I + LT EF L L K G+V Sbjct: 119 R--HYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQV 176 Query: 174 WSRQQLMDSVWEDAQDTYD-----RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +R+ L+ +VW YD RTVD I+ LR K+ I T RG+GY L+ Sbjct: 177 MTREHLLQTVW-----GYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQ 230 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 123/228 (53%), Gaps = 11/228 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VEDE IA+ L LQ G L R +PDV+++D LP +SG Sbjct: 6 NILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVA 65 Query: 65 LCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 L R L A A+P++ LTARSEE D++ GL+ GADDY+ KPFSP+E+ AR+R +LRR Sbjct: 66 LARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRR 125 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTP------LALTRYEFLLLKTLLKSPGRVWSR 176 T V +IG ++ P+++ + F P + L EF LL L+ P RV SR Sbjct: 126 APQLTAEQV-QIGGLSVD-PSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSR 183 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 L+D VW D +RTVD HIK LR L + + T RG GY Sbjct: 184 GALLDKVWGDHVFIEERTVDVHIKRLREALSPVQC-AEMVETVRGAGY 230 >UniRef50_B2TMR2 Transcriptional regulatory protein ResD n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TMR2_CLOBB Length = 227 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 124/220 (56%), Gaps = 1/220 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LV+DE+ I + + L +EGF + G + D++ILD LPDISG E Sbjct: 3 NILLVDDEKKICEFVKAYLDKEGFVTDEANDGCTAIRYFDLNRYDLVILDRMLPDISGEE 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C + +P++ LTA+ +E DRL G ++G DDY+ KPF+ +E+ RV+++L+R K Sbjct: 63 VCNHIRN-KSDVPIIMLTAKIDEEDRLGGFKLGCDDYLCKPFNIKELIFRVKSILKRSGK 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + E+N + +++ + LT E+ +L + +P +++SR++L++SV Sbjct: 122 IDFRDIMKFKQGIEINTSSHEVTVRGKKILLTNTEYKILLLMASNPQKIYSREELLESVI 181 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 E+ + DR +D+HIK LR K+ + D I T G+GY Sbjct: 182 EEYYEKMDRVIDSHIKNLRQKIEVNSRDCKIIKTIYGVGY 221 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P08368 Transcriptional regulatory protein creB n=64 Tax... 339 5e-92 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 334 2e-90 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 328 8e-89 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 328 9e-89 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 326 3e-88 UniRef50_B8G179 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 325 7e-88 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 324 1e-87 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 322 5e-87 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 321 9e-87 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 321 1e-86 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 321 1e-86 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 320 2e-86 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 320 3e-86 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 319 3e-86 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 319 6e-86 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 319 6e-86 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 317 2e-85 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 317 2e-85 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 317 2e-85 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 315 8e-85 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 315 8e-85 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 315 9e-85 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 314 2e-84 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 313 3e-84 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 312 4e-84 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 312 4e-84 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 312 5e-84 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 312 5e-84 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 312 6e-84 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 312 7e-84 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 311 1e-83 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 311 1e-83 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_C4L340 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 309 5e-83 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 309 5e-83 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 309 5e-83 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 309 5e-83 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 309 6e-83 UniRef50_C4L703 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 306 3e-82 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 306 3e-82 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 306 4e-82 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 306 5e-82 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_B8G223 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 305 5e-82 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 305 7e-82 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 305 8e-82 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 305 9e-82 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_B8I014 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 304 1e-81 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_D1C280 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 304 2e-81 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_B8I272 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A4AL32 Putative two-component system response regulator... 302 5e-81 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 302 5e-81 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 302 5e-81 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 302 9e-81 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 301 1e-80 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 301 1e-80 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 301 1e-80 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 301 1e-80 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 301 1e-80 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 300 2e-80 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 300 3e-80 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 299 4e-80 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 299 4e-80 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 299 5e-80 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 299 5e-80 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 299 6e-80 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 298 6e-80 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 298 6e-80 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 298 8e-80 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 298 8e-80 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 298 1e-79 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 298 1e-79 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 298 1e-79 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 298 1e-79 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 298 1e-79 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 297 2e-79 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 297 2e-79 UniRef50_C0WE14 Two-component system transcriptional regulator n... 297 2e-79 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 297 2e-79 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 297 2e-79 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_B8G869 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 297 2e-79 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 297 2e-79 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 297 3e-79 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 297 3e-79 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 297 3e-79 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 296 3e-79 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 296 3e-79 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 296 4e-79 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 296 4e-79 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 296 4e-79 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_C4RGF6 Two-component system response regulator receiver... 296 5e-79 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 296 5e-79 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 295 5e-79 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 295 6e-79 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 295 6e-79 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 295 7e-79 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 295 1e-78 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 294 2e-78 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 294 2e-78 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 293 2e-78 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 293 3e-78 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 293 3e-78 UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromon... 293 3e-78 UniRef50_UPI0001B559F0 two-component system, response regulator ... 293 3e-78 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 293 3e-78 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_UPI000038414E COG0745: Response regulators consisting o... 293 4e-78 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 293 4e-78 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 292 4e-78 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 292 5e-78 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 292 6e-78 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 292 6e-78 UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminoc... 292 6e-78 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 292 8e-78 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 292 9e-78 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 292 9e-78 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 292 9e-78 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 291 1e-77 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 291 2e-77 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 291 2e-77 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 290 2e-77 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 290 2e-77 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 290 2e-77 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 290 2e-77 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 290 3e-77 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 290 3e-77 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 290 3e-77 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 290 3e-77 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_B4U9Z2 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostrid... 289 4e-77 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bac... 289 5e-77 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 289 5e-77 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 289 5e-77 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 289 5e-77 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 289 6e-77 UniRef50_A9BP07 Two component transcriptional regulator, winged ... 288 8e-77 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 288 8e-77 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 288 8e-77 UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 T... 288 9e-77 UniRef50_A7K1J9 DNA-binding response regulator n=13 Tax=Vibriona... 288 9e-77 UniRef50_UPI0001C31E43 two component transcriptional regulator, ... 288 1e-76 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 288 1e-76 UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicut... 288 1e-76 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 288 1e-76 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 288 1e-76 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 288 1e-76 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 287 2e-76 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 287 2e-76 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 287 2e-76 Sequences not found previously or not previously below threshold: UniRef50_A9VV65 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 304 1e-81 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 302 5e-81 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 300 2e-80 UniRef50_A4J267 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 299 4e-80 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 298 9e-80 UniRef50_D1C683 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 296 3e-79 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 296 4e-79 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 294 2e-78 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 293 2e-78 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 293 2e-78 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 293 3e-78 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 292 5e-78 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 292 5e-78 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 292 9e-78 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 290 3e-77 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 290 3e-77 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 289 6e-77 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 288 6e-77 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 288 1e-76 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 287 2e-76 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 287 2e-76 >UniRef50_P08368 Transcriptional regulatory protein creB n=64 Tax=Proteobacteria RepID=CREB_ECOLI Length = 229 Score = 339 bits (871), Expect = 5e-92, Method: Composition-based stats. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI Sbjct: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR Sbjct: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM Sbjct: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL Sbjct: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 128/230 (55%), Gaps = 4/230 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VED+ + + L Y L +EG+ +E E GL L R P ++ILDV LP I Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFELCR + ++P+L LTARS E D++ GLE GADDY++KPF RE+ AR++ LLR Sbjct: 87 DGFELCRLIR-TESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLR 145 Query: 121 RVKKFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 R + ++ + ++IG E+ + L + EF L ++++ RV+SR+ Sbjct: 146 RSQTQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSRE 205 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL++ VW + RTVD HI LR K+ A + T RG GY Sbjct: 206 QLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 136/229 (59%), Gaps = 2/229 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + V +V+D++ + + + L+ EGF+V++ G + K + +ILD+ LP++ Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 61 SGFELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G+E+C ++ + +P++ LTA+ EE D+++GL++GADDYV KPFSPRE+ ARVR L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 +RR + F ++ G ++ + ++ D + L EF LL L+K+P RV++R++ Sbjct: 121 IRRDQDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREE 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++ +W + RTVD H+K +R KL + S I T G+GY Sbjct: 181 ILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFE 229 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 145/227 (63%), Gaps = 4/227 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+D++ I L L++EG++V G +DKAR+ PD+++LDV LP + G+ Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C+++ +P++ LTAR +E DR++GLE+GADDYV KPFSP+EV AR+R + RR++ Sbjct: 62 VCKEIRRT-SDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQP 120 Query: 125 FSTP---SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 S ++++G L++ + ++ TP+ LT E+ LL+ L PG+V+SR QL++ Sbjct: 121 ASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIE 180 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 V + A + Y+RTVD+HIK LR KL A + I T G+GY L G Sbjct: 181 KVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVG 227 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + LVEDE+ I D + L++E + V G L++ K D++ILD+ LP + Sbjct: 7 ETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVP 66 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +CR + + +P++ LTA+ E DR++GLE+GADDY+ KPFSPRE+ ARVR LLRR Sbjct: 67 GERVCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR 125 Query: 122 VKKFSTPS-PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 V S P V+ G ++ ++ + LT EF LL TL + PGRV+SR +L+ Sbjct: 126 VHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELV 185 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + V + Y+RT+D+H+K LRAK+ + ++T G+GY Sbjct: 186 EKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + +V+D+ I + + Y L +EG+ V L + D+ I+D+ LP + Sbjct: 25 MAKKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGM 84 Query: 61 SGFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 GFEL RQL + PV+FL+A+ EE D++LGLE+GADDY+ KPFS RE+ AR++ + Sbjct: 85 DGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAV 144 Query: 119 LRR----VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 RR ++ I E++ ++ D ++LT EF LL+ L ++ G+V+ Sbjct: 145 FRRIQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVF 204 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 SR L+D +W RTVD HI+ LR K+ + I T RG GY R Sbjct: 205 SRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFR 257 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 128/236 (54%), Gaps = 8/236 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQR T+ + ED+ IA+ + L +EG+ + G + + D++ILD+ +P + Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G+E+ R + +P++FL+A++ + D++ GL +GADDY+ KPF+P E+ ARV LR Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 121 RVKKFSTP-------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R ++ + P + I G +++ ++ ++ + LT EF +L L P +V Sbjct: 123 RFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKV 182 Query: 174 WSRQQLMDSVWEDA-QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +S + + VW +A ++ TV HI+TLR KL I T G+GY+ +G Sbjct: 183 FSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ V + +DE+ I D L L++E + V+ G L +++ILD+ +P I Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+CR+L + +P+L LTA+ +EVD+++GL IGADDY+ KPFS EV AR++ L+R Sbjct: 61 DGIEVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMR 119 Query: 121 R-----VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + ++ ++ ++ D ++LT E LLK +P +V++ Sbjct: 120 RFLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + QL +VW+ D TV HI+ LR K+ A + I T G+GY G Sbjct: 180 KTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVG 232 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 137/230 (59%), Gaps = 11/230 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE I + L + L++ G+ VE+ G L +A + D+++LD+ LP++ G E+ Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60 Query: 66 CRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV- 122 CRQL A +P++ LTA++EE+DR+LGLE+GADDYV KPFS RE+ ARV+ +LRR Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 123 ------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 ++ + IG L+ + Q D +ALT E+ LLK L+ +PGR +SR Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +L++ +W RTVD HI+ LRAKL+ I T RG+GY Sbjct: 181 DELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 138/225 (61%), Gaps = 6/225 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED+ I + + Y L++EG+ V + E G L+ K+ PD+++LDV LP++ G + Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 65 LCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +C+++ +P++ L+AR E DR++GLE+GADDY+ KPFSPRE+ AR++ LR Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 123 KKFSTPSPV-IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 ++ STP P+ + G E+ + ++ + LT EF LL +K P +V+SR+ L+ Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW RTVD HI LR+KL++++P I + RG+GY L Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSP---IIESVRGVGYRL 224 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 131/232 (56%), Gaps = 10/232 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK---------QVPDVMILDV 55 + +VEDE I D + +LQQEGF V+V G L+ R + PD+++LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 56 GLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARV 115 LP ++G + CR L +P+L L+A+ E DR++GLEIGADDY+ KPF RE+ AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 116 RTLLRRVKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 R LLRR + +P V+R +L ++ D L L+ EF LL+ ++ P RVW Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 SR QL++ +W +T+D HI+ LR K+ A + S + T RG GY L Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 134/234 (57%), Gaps = 6/234 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + T+ +V+DE+ I D + L+ EG+ V E G+ L+ K+ D++ILD+ +P++ Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E C ++ +P++ L+A++E++D++ GL GADDY+ KPF+P E+ ARV++ LR Sbjct: 61 DGIEACTKIREEK-NMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLR 119 Query: 121 RVKKFSTPS-----PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R KKF+ + +I I +N ++ + + LT EF +L+ L ++ G V+S Sbjct: 120 RYKKFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFS 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +++ + VW++ D TV HI+ LR K+ + T G+GY + L Sbjct: 180 IEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVEKL 233 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 130/227 (57%), Gaps = 5/227 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q + +V+DE + D LV LQ+E + G LD ++ +++LDV +P++ Sbjct: 4 QSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMD 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G C ++ +P++ LTARS+E+DR+ GL+IGADDY+ KPFSPRE+ AR+ LRR Sbjct: 64 GLTACMRIREF-SNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRR 122 Query: 122 VKKFS-TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 +F+ S + IG EL+ + + P++LTR EF LL +++ +V+SR+QL+ Sbjct: 123 SHRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLL 182 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D +W RTVDTHIKTLR KL I T G+GY Sbjct: 183 DQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFE 226 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQ+ + L+ED Q I + L+ + V G L Q D++ILD+ LP + Sbjct: 1 MQK-RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSM 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G ++C+ L A + P+L LTA+ E DR++GLE GADDY+ KPFS RE+ ARV+ LR Sbjct: 60 DGLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLR 119 Query: 121 RV-----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + + G +++ +++ D + LT EF LL + PG+V+S Sbjct: 120 RTDMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFS 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R++L+D+VW Y+ TV++HI LR KL + + T G+GY Sbjct: 180 REKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+++TV +V+DE+ + + L+ F+ E G L + DV+++DV +P + Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GF LC ++ +P+LFLTAR +E D++ GL++G DDY+ KPFSP E+ AR+ ++R Sbjct: 61 DGFTLCARIREQ-SDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMR 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + + G ++E +++ P+ LT EF LL L K G+V+SR+ L+ Sbjct: 120 RAYHNKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW RTVDTHIKTLR KL+ + I T G+GY Sbjct: 180 AQVWGYDYTGNARTVDTHIKTLRMKLKQAS---DFIQTVWGIGYKFE 223 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 10/238 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + +V+DE I L Y L+Q G+ V G L Q ++LD+ LP + Sbjct: 1 MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+ ++L P++ +TA+++E D++ GLE+GADDY+ KPFSPREV AR++ ++R Sbjct: 61 DGMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120 Query: 121 RVKKFS----------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 R V+ +G ++++ +++ ++LT EF LL ++ Sbjct: 121 RTTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVERE 180 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 GRV SR +++ VW + R VD HI LR K+ A I T RG GY G Sbjct: 181 GRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVG 238 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 127/225 (56%), Gaps = 2/225 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + + V+D+ I L + L +EGF V G L KAR+ PD++ILD+ +P + GF Sbjct: 3 QRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGF 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E ++L A +P++ L+AR+EEVDR++G +G DDY KPFSP E+ RV+ +LRR+ Sbjct: 63 ETYQKLKAQR-EVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLG 121 Query: 124 KFSTP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + +++ G+ L+ ++ ++ + LT +F LL + +P RV+++ L+D Sbjct: 122 EPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDK 181 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +W+ + D TV HI+ LR K+ + I T GMGY Sbjct: 182 IWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 135/225 (60%), Gaps = 1/225 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + LVED++GI ++L +L +EG+ VEV G+ L+K + PD+++LD+ LP+ G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +E+C+++ + +P++ LTA+ EEVD++LGL++GADDY+ KPF +E+ AR+ +LRR Sbjct: 61 WEVCKEIRKI-SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRY 119 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + S I FE++ + + L+ EF +LK LL SPGRVW+R ++ Sbjct: 120 QSDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKH 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +W + R VD +I+ LR K+ I T R +GY + Sbjct: 180 IWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 135/228 (59%), Gaps = 3/228 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M R+ + +V+DE I + L +EG+ V G L+ K+ PD+++LD +P++ Sbjct: 1 MARK-ILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEM 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG E+ R++ +P++ LTA++EEVD+L+G E G DDYV KPFS RE+ AR++T+L+ Sbjct: 60 SGIEVLREIRKK-SQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILK 118 Query: 121 RVKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 R++ + V+ G L ++ PL LT EF LL+ LK+PG+ +SR +L Sbjct: 119 RLEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLEL 178 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ +A + Y+RT+DTHI LR K+ + I T G+GY L+ Sbjct: 179 LEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLK 226 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 128/228 (56%), Gaps = 3/228 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +V+DE G+ L L+QEGF V G L K R D+++LD+ LP + G Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +CR++ A P++ LTA+++++D++LGLE+GADDY+ KPF+ RE+ AR+R +LRR Sbjct: 61 LTICREVRAAG-MTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRA 119 Query: 123 KKFSTPSP--VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + S + +G L+ + PL LT E+ LL+ L + PG V++RQ+L+ Sbjct: 120 EAASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D VW +RTVD H++ +R KL + T G+GY L Sbjct: 180 DLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEA 227 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 138/228 (60%), Gaps = 2/228 (0%) Query: 1 MQRET-VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M ++ + +VEDE IA+ L L+ GF +RG R++ PD+++LD+ LP Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G E+C++L + +P++ LTAR EE+DRLLGLE+GADDY+ KPFSPREV ARV+ +L Sbjct: 61 KDGMEVCKELRSF-SQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVL 119 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR S I G L+E + ++S L LT EF++LK ++ P RV+SR +L Sbjct: 120 RRSNTPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNEL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +D + YDRT+D+HI+ LR K++ PDL I++ G GY Sbjct: 180 LDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +V+DE I L L++E +A++ E G + K + D+++LD+ +P Sbjct: 5 NETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTD 64 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CRQ+ A P++ LTA+ EE +R+ G E G DDY+ KPFSPREV RV+ LLRR Sbjct: 65 GIEVCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123 Query: 122 VKKFS------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + S V+ H ++ A +++ T ++LT E+ LL L K+P +V+ Sbjct: 124 ASQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYD 183 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPD-LSPINTHRGMGYSLR 227 R++L+ VW+ RTVDTH+K LR KL ++P+ I T G+GY Sbjct: 184 REKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFE 236 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 319 bits (820), Expect = 3e-86, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 114/226 (50%), Gaps = 4/226 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q + +V+DE I + + LQ G+ E G L D++ILDV +P + Sbjct: 71 QMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G R++ A H PV+ LTAR EE D+L GLE GADDYV KPFSPRE+ ARV+ +L R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 122 VKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 S S + G ++ + + ++LT EF LL L + G SR++++ Sbjct: 191 TMPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKIL 250 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW DRTVDTH+K LR + I T G+GY Sbjct: 251 QKVWNYDYFGEDRTVDTHVKMLR---GHLGKCRGYIATVWGIGYKF 293 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 319 bits (819), Expect = 4e-86, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +VEDE+ I + L++E + V G D PD++ILD+ +P G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +ELC ++ +P++ LTA+ EE DR+LGL +GADDY+ KPFSPRE+ RV+ +LRR Sbjct: 61 WELCGEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRG 119 Query: 123 KKFSTP-----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + + S VI ++ + + + LT EF +L + K P +V+SR Sbjct: 120 NQVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRS 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL++ +W+ + TV + LR KL I+T G+GY Sbjct: 180 QLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFE 229 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 319 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 128/223 (57%), Gaps = 2/223 (0%) Query: 7 WLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELC 66 +VED+ I++ + +L+ E FAV+V G L+ A + +++ILD+ LP + G+E+C Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 67 RQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 R+L A + P++ LTA++EE D++LGL++GADDY+ KPF PRE ARV LLRR Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 ++ P + + + Q + LT EF LL L ++ GR R+QL++ VW Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 RT+D HIK LR K+ + P + + T G+GY L Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLE 231 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 319 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 5/232 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ V ++ED+ IA+ + L G ++ GL ++ A DV+ILD+ LP + Sbjct: 1 MLQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+C++L H +P+L LT+RSEE D++ L GADDY+ KPFS RE+ ARV +R Sbjct: 61 DGLEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIR 120 Query: 121 RVKKFSTPS-----PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + PS L+ +++ + +T EF LL +K+PGR +S Sbjct: 121 RYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYS 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R +L+D VW + Y+ TV++HI LR K+ I T G+GY Sbjct: 181 RTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 2/229 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ + +V+DE I+ + + L+ G+ V G V + + PD+++LD+ LP + Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G ++CR+L A+P++ LTA + D++ GL+ GADDY+ KPFSP+E+ +R++ + RR Sbjct: 61 GIQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRR 120 Query: 122 VK--KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 ++ S IG + ++ + LT EF LL L K G+V SRQQL Sbjct: 121 IQTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQL 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + VW+ R VD HI LR K+ I T R +GY L Sbjct: 181 LHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHA 229 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 6/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+R ++ + +DE IAD + L++EG+ V G + Q D+++LD+ +P + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G+E+ RQ+ A H +P++FL+A++ + D++ GL +GADDY+ KPF+P E+ ARV LR Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 121 R-----VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R K + + +G ++ + + + LT EF +L L P +V++ Sbjct: 120 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + + VW D TV HI+TLR KL I T G+GY+ G Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+DE+ I L + L Q+ V+ G L+ R D+++LD+ LP + G Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK- 123 +C+Q+ +P++ LTA+ +++D++LGL+ GADDY+ KPF+ EV AR++ +LRR Sbjct: 73 VCQQIREF-SNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 124 --KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + S VI+ G +++ + + D + LT EF LL+ L +PG+V+SR L+ Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW RTVD H++ LR K+ + ++T G+GY Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFN 237 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVP-DVMILDVGLPDISGF 63 V +VED+ + D + + L +EG E G L+ P D+++LDV LP + G Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 64 ELCRQLLALHP---ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +CR+L H +PV+ LTAR +E ++GLE+GADDY+ KPFSPR++ +RVR LR Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 121 RVKKFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 R + + SP + E++ +++ + LT EF +L L +PGRV+SR+ Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 Q+MD +W R+ D HI+ LR K+ + I T RGMGY Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + V LV+DE+ I L Y L +EGF E+ G L A ++ D ++LD+ LP + Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C++L + P++ ++A+S+E D++L LE+GADDYV KPFSPRE+ ARV+ +LRR Sbjct: 68 GIEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRR 127 Query: 122 VK------KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + P + L ++ L LT E+ LL L+K P + Sbjct: 128 TEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLT 187 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 R++L++ +W R VD HI LR K+ I T RG GY + L Sbjct: 188 RERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKEL 241 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 125/226 (55%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ V +VEDE I + L+ G+ V E G L + +PD+++LD+ LP I Sbjct: 4 KKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGID 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+ + P ++ LTA+ ++ D+++GLE+GADDY+ KPF+P E+ AR++ +LRR Sbjct: 64 GLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRR 123 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 ++ G L+ A ++ + + LT E+ LLK +++PG+ R+++++ Sbjct: 124 RDRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLN 183 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +W + +T+D HI+ LR K+ D I T G GY + Sbjct: 184 GIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQ 229 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 130/243 (53%), Gaps = 18/243 (7%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + LVEDE IA + + L +EG+ VE G +K + D++ILD+ LP + G Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 63 FELCRQLLALHP-ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR- 120 E+CR++ +PV+ LTA+S+E+++++GLE+GADDYV KPFSPRE+ ARV+ LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 121 RVKKFSTP----------------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLK 164 R K+ + V + G + + + L LT EF LL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 165 TLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 ++ + G+V +R++L++ +W RTVD HI+ LR K+ + T RG+GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 225 SLR 227 L+ Sbjct: 241 RLK 243 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ +V+DE + D L L+QEGF V G L AR + PD+++LD+ +P++ G+E Sbjct: 3 TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYE 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 R A PV+ LTA+ E+ D++LGLE+GADDYV KPF+ RE+ AR+R +LRR ++ Sbjct: 63 FLRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+R L+ + + LT EF +L TL+ +PG+V+SR L+D V Sbjct: 122 TPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 DA + +RT+D HI+ LRAK+ A I T GMGY Sbjct: 182 GDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 128/232 (55%), Gaps = 7/232 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M R+ V +V+DE+ IAD L + L++EG+ V G +D ++ PD+++LD+ LP Sbjct: 1 MARKVV-VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGR 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+CR++ + +P++ LTA+ E+D++LGLE+GADDYV KPFS RE+ ARV+ LR Sbjct: 60 DGMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118 Query: 121 R-----VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + + I I + A I + LT EF L L K G+V + Sbjct: 119 RHYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMT 178 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R+ L+ +VW RTVD I+ LR K+ I T RG+GY L+ Sbjct: 179 REHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQ 230 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 126/230 (54%), Gaps = 5/230 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + LVED+ IAD L L G AV+V G L +A + D+++LD+ LP Sbjct: 5 AEKRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTD 64 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF++CR+L P+L +TA++EEVD++LGLE+GADDY+ KPFS REV ARV+ L RR Sbjct: 65 GFDICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRR 124 Query: 122 VK-----KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 V+ + I +G + +++ + LT EF LL + PGR +SR Sbjct: 125 VEVDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSR 184 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +L+D VW Y TV+THI LR K+ + + T G+GY Sbjct: 185 DELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + +V+DE I L L++E F + G + A + ++LD+ LP++ Sbjct: 1 MSNE-ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEM 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G ++ +L H P++ LTA+ EE +R+ G E GADDY+ KPFSPREV RV+ LLR Sbjct: 60 DGIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118 Query: 121 RVKKFSTPS------PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 R + + VI H E++ A ++ + + LT E+ LL L K+P +V+ Sbjct: 119 RTQSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVF 178 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSP-INTHRGMGYSLR 227 R+QL+ VW RTVDTH+K LR KL ++ + + I T G+GY Sbjct: 179 DREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFE 232 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 127/234 (54%), Gaps = 12/234 (5%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 ++ + +V+D+ IA+ + L +E F ++ G + + R+ P++++LD+ LP I G Sbjct: 4 KQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDG 63 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +E+CR++ +P++ L+A+ E D++LGLE+GADDY+ KPF +E+ ARV+ +LRRV Sbjct: 64 YEVCREVRKT-STIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRV 122 Query: 123 KKFSTPSPVI---------RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 + S + +N+ +++F + + E L L P +V Sbjct: 123 VPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQV 182 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++R+QL+D +W RTVD HIK LR K++ ++T G+GY Sbjct: 183 FTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFE 234 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DEQ IAD + L+ EGF + G + ++ ILDV LPDI GF Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC+++ H PV+ LTA+ EE+D++ GL +GADDY+ KPF P E+ ARV+ LRR K Sbjct: 64 LCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122 Query: 125 FSTPSP-----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 +++ P +I L+ + + + ++LT EF +L L + GRV S ++L Sbjct: 123 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182 Query: 180 MDSVWEDAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW D T TV HI+ LR K+ I T G+GY + Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ +V+DE I + Y L+Q + V + GL ++ +K + D +I+D+ LP + G Sbjct: 3 KTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGI 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E +Q+ +P++ LTA++ +VD++LGLE+GADDY+ KPFSP+E+ +R++ +LRR Sbjct: 63 EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122 Query: 124 KF---STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + + P ++ + ++ + + + LT EF LL+ L K+ +V SR Q++ Sbjct: 123 RAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQIL 182 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + VW R VD HI LR KL I T RG GY Sbjct: 183 EKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKA----------RKQVPDVMILD 54 + ++EDE I +T+V LQ+EG+ V G L+ + ++ILD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 55 VGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCAR 114 V LP I+G +LCR + +P+L ++A+ E+DR++GLEIGADDY+AKPF RE+ AR Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 115 VRTLLRRVK-KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R LLRR + + +T PV+R L + + L L+ E+ LL+ ++ P RV Sbjct: 143 CRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRV 202 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W R+QL+D VW +TVD HI+ LR K+ I T RG GY Sbjct: 203 WPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 109/239 (45%), Positives = 148/239 (61%), Gaps = 11/239 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + VEDE I L Y L++EG+ V G L +Q D +ILDVGLPD Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +GFE+C+QL + P+LFLTAR +E+DR++GLEIGADDY KPFS RE+ AR++ + R Sbjct: 62 NGFEVCKQLRQKY-QTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWR 120 Query: 121 RVK----------KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 R++ S ++ + N + QI + L LTRYE+ LL L++ P Sbjct: 121 RMEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHP 180 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +V+SRQQLMD +WE + + +RTVDTHIK+LR KL+ I PD PI THRG GYSL L Sbjct: 181 EKVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLVKL 239 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + ++ED + +EGF E GL + ++ D++ILD+ LP + G Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ +P++ LTA+ E D+++G E+GADDYV KPFSP + AR++ ++RR K Sbjct: 62 ICRKIRET-STVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 120 Query: 125 FST---PSPVIRIGHFELNEPAAQISWFDTPLA-LTRYEFLLLKTLLKSPGRVWSRQQLM 180 +I F +N+ ++ P+ LT EF LL L+++P +V+SR+QL+ Sbjct: 121 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + VW +RTVD HIK LR KL + D + T G+GY Sbjct: 181 EQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKF 224 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 131/233 (56%), Gaps = 7/233 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +VED+Q IA + L++E F V G L ++QVPD+++LD+ LP + Sbjct: 10 AMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLD 69 Query: 62 GFELCRQLLAL-HPALP-VLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G E+C ++ P +L LTA+ EE+DR++GL GADDY+ KPFSPRE+ ARVR LL Sbjct: 70 GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALL 129 Query: 120 RRVKKFSTP-SPVIRIGHFELNEPAAQISW----FDTPLALTRYEFLLLKTLLKSPGRVW 174 RR + P + R HF+++ Q S L LT EF LL T + PGRVW Sbjct: 130 RRQLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVW 189 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +R QL++ +W + +R VDTHI+ LR K+ + + I T G+GY Sbjct: 190 NRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 3/227 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VEDE +A + L+ EG+ V V GL L AR+ PD+++LD LP I Sbjct: 1 MSNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG ++C++L +P++ LTA+ + DR+ GL+ GADDY+ KPF+ E+ ARVR LR Sbjct: 61 SGLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLR 120 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R +++ LN ++ + LT EF LL+ L+ P +V SR Q++ Sbjct: 121 R--NHEEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQIL 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + VW ++ +++ LR KL A + I T RG+GY LR Sbjct: 179 ERVWGYDFMGDSNIIEVYVRYLRLKLEA-EQEKRLIQTVRGVGYVLR 224 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 10/234 (4%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + V +V+DE I L Y L+Q F V+ G L D+++LD+ LP++SG Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+ +++ PV+ LTA+ E D++ GLE+GADDYV KPFSPREV AR+ +LRR Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 123 KKFSTPS----------PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGR 172 +K + + G F ++ ++S D L LT EF L++ L+ + Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 173 VWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 V SR QL+ VW R VD I LR K+ + T RG GY Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 135/229 (58%), Gaps = 4/229 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +V +VEDE+ +AD L ++L++EGF V G L + + D+++LD+ LP +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++C+QL A +PV+ +TAR E+D+++GLE+GADDYV KP+S RE+ AR+R +LRR Sbjct: 61 TDVCKQLRARSS-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 119 Query: 123 KKFSTPSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 V+ G ++ +S P+ L EF LL+ L+++ GRV +R QL Sbjct: 120 ADNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +D VW +T+D H+K LR+K+ + + T RG+GY L G Sbjct: 180 IDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 117/230 (50%), Gaps = 5/230 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +T+ +V+DE I L Y L+QE F V G L A +Q D +ILD+ LP + G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + +++ P++ LTA+ E D+++GLE+GADDYV KPFSPRE+ AR+R + RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 123 -----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + S I +G ++E D L LT EF LL + +V SR+ Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +L+++VW R VD + LR K+ + T RG GY L Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 5/227 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ V ++EDE+ IAD + LQ E + V G + ++Q D +ILD+ LPD+S Sbjct: 4 NKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLS 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+++ L +P+L LTA+ EE DR+ GL+IGADDY+ KPFSP+E+ ARVR ++RR Sbjct: 64 GEEICKRIR-LQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRR 122 Query: 122 VKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + +I + G +++ + D + LT EF LL +++ G+V+SR +L Sbjct: 123 TNNEGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDEL 182 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + V YDRT+D HIK LR K+ I T G+GY Sbjct: 183 VVKVLGYDYVGYDRTIDVHIKNLRHKIEC--EYYKYIVTVYGVGYRF 227 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 127/223 (56%), Gaps = 4/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+D+ +++ + L+ GF V+ G L A PD+++LD+ LP + G E Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R+L A P +PV+ LTAR++E DR+ GLEIGADDYV KPFSPRE+ RV+++LRR + Sbjct: 117 VFRRLRAHRP-VPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 125 --FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + V+R G ++ A + PL LT EF LL LL+ PGR ++R +L++ Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 VW + TV HI+ LR K+ + T G+GY Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 137/228 (60%), Gaps = 3/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++TV++VED+ IA + Y L+ GFAV F G V+ ++ K P++ +LD+ +P Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 62 GFELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G E+CRQ+ PV+FLTA++ E D++ GL++GADDY+AKPFSPRE+ AR++ +L Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR ++ P+ V+ G ++ A ++ + T EF LL+ L + PGRV++R QL Sbjct: 121 RRFERPLPPA-VVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +D+VW + R+VD +++ +R K+ D + T RG GY Sbjct: 180 LDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFE 227 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 131/223 (58%), Gaps = 4/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+D+Q + + + ++EGF V + G VL ++ PDV+ILD+ LP G Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCR+L A+ +P++ LTA+ EE DR+LGLE+GADDYVAKPFSPRE+ AR++ +LRR + Sbjct: 66 LCRRLRAVR-MIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 125 FSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + ++ E+ ++ +T EF LL L ++P RV++R++L+ +V Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W RTVD HI+ LR KL ++ + + T G+GY Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPHE--YLQTVWGVGYKF 225 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + + +DE+ + D LV L++EG+ GL +++ +++ +++LDV +P++ G Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 C ++ +P++ LTARSEE+DR+ GL+IGADDY+ KPFSPRE+ AR+ LRR Sbjct: 67 ACMRIREF-SNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125 Query: 125 FSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 FS +G ++ +S + LTR EF LL + + +V+SR+QL+D + Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 W RTVDTHIKTLR KL I T G+GY Sbjct: 186 WGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEA 227 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 114/223 (51%), Gaps = 2/223 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + + +D+ L + L EGFAV G LD A Q PD++ILDV +P + GF Sbjct: 5 RRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGF 64 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +C ++ A A+P+L LTAR + VD+++G +GADDYV KPF E+ RV +LRR+ Sbjct: 65 AVCGRIRAA-SAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMP 123 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 S +R GH E+N+ + D LT EF LL + PG ++R+ L+ V Sbjct: 124 TLP-ESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARV 182 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W T TV I+ LR K+ I T G+GY Sbjct: 183 WHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKF 225 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + V +VEDE +A L Y L++EG++V V G L +A + PD++++D LP +S Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 62 GFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G E+CR+L +P++ LTAR EE DR+ GL+ GADDYV KPFS E+ AR+R +L Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR++ VI G ++ A ++ D + L EF LL L++ PGRV+SR+QL Sbjct: 121 RRIRP-GLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +D+VW RTVD H+ LR L + PI T R GY+ Sbjct: 180 LDAVWGSDVYVEARTVDVHVGRLRKALN-NKEERDPIRTVRSAGYAF 225 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 136/228 (59%), Gaps = 3/228 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +V +VEDE+ +AD L ++L++EGF V G L + + D+++LD+ LP +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++C+QL A +PV+ +TAR E+D+++GLE+GADDYV KP+S RE+ AR+R +LRR Sbjct: 61 TDVCKQLRARSS-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 119 Query: 123 KKFSTP--SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + V+ G ++ +S + L EF LL+ L+++ GRV +R QL+ Sbjct: 120 GDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLI 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D VW +T+D H+K LR+K+ A + + T RG+GY L G Sbjct: 180 DRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M V + +D+ + + + +++ + G L+ K+ PDV+ILDV +P + Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFE CR++ P++ LTA+ EE DR+LGLE+GADDYV KPFSPRE+ AR+R ++R Sbjct: 90 DGFEACREIRKK-WDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMR 148 Query: 121 RVKKFSTPSP-----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R++ ++ ++ ++ EF LL L+KSPG VWS Sbjct: 149 RLQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWS 208 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R+QL++ VW RT+D HIK +R +L + I T G+GY Sbjct: 209 REQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLP--YDCIQTVWGIGYKF 257 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 100/229 (43%), Positives = 133/229 (58%), Gaps = 3/229 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q T+ LV+DEQ I D + Y L++ G+ V+ E G L +R + D+ +LD+ +P ++ Sbjct: 4 QPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMN 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+ELCR L A PVLFL+AR E+D+++GLEIGADDY+AKPF RE+ ARVR LLRR Sbjct: 64 GYELCRNLRTRTNA-PVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR 122 Query: 122 VKKFSTP--SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + P I G L+E + + LT EF LL L+K G+V SR+ L Sbjct: 123 GQMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDL 182 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + W T +TVDTHIK LR KL A D I T RG GY R Sbjct: 183 LREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 92/221 (41%), Positives = 136/221 (61%), Gaps = 2/221 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVEDE+ I D L L+QEGF V + GL L + PD+++LD+ LP +SG+E+ Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 +++ P++ LTAR +EVD+LLGLE+GADDY+ KPFSPRE+ R++ +LRR + Sbjct: 65 MKKIRQK-NNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPH 123 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + V I + +N + DT LALT EF +L L ++PG+V+SR +++ V+ Sbjct: 124 EQVTNV-SISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFG 182 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D + Y+RT+DTHI LR K+ A I T G+GY L Sbjct: 183 DIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 3/228 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGF-AVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M++ + +V+DEQ + + L++EGF + D P + ILDV LPD Sbjct: 1 MEQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPD 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G++LC+Q+ A +P+LFL+A+SEEVD+LLGL IG DDY+ KPFSP+EV RV+ L Sbjct: 61 GEGYQLCQQMRAQ-SNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQL 119 Query: 120 RRVKKFSTP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 RRV P + +G F++NE ++ L LT E LL L++P R+ S++ Sbjct: 120 RRVSMMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKET 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L VW ++ D TV HI+ LR K+ + + I T +G+GY L Sbjct: 180 LFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 3/227 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 T+ LVED+ + +TL Y ++ GF V GL L+ AR+ PD++ILDV LP + G Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR-- 120 F +CR + A +P++ LTA +E R+ GLE+GA DYV KPFS E+ ARVR +LR Sbjct: 61 FSVCRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWN 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 ++ + S V+ +G +L+ + ++ + D + L+ EF LL L+ + G SR L+ Sbjct: 120 ERQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + VW +RT+D H++ LR KL + + I T RG+GY + Sbjct: 180 ERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQ 226 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +V+DE+ I L L++ F++E+ G L K + PD++ILD+ LP+IS Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+++ P+L LTA+ E D++ G GADDY+ KPFS RE+ AR++ +LRR Sbjct: 61 GEEVCQKIRQ-DKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRR 119 Query: 122 VKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + + + G +++ ++ LTR EF +L TL+++PG+V++R+QL Sbjct: 120 SNQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 V YDRT+D HIK +R KL I T G+GY G Sbjct: 180 AKKVMGLEYKGYDRTIDAHIKNIRKKLNL--EKNQLIITVYGVGYKFEG 226 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 1/223 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ +++DE + + L LQ EGF V + G L AR PD+++LD+ +P++ G Sbjct: 3 QTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGL 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 + R P++ LTA+ E+ D+++GLE+GADDY+ KPF+ REV ARVR +LRR Sbjct: 63 DFMRAW-NKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSY 121 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 K + V+RIG L A + + + LT EF +L TL+ SPG V+SR L+D Sbjct: 122 KAQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRT 181 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 A + Y+RT+D HI+ LR+K+ + I T G+GY Sbjct: 182 SGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 135/230 (58%), Gaps = 5/230 (2%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M + + +V+DEQ I D + L+++GF V G LD + +++LD+ LP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 ++G E+C ++ A+ +P++ LTA++EE +++ G+ +GADDY+ KPFS RE+ RVR LL Sbjct: 61 MTGEEVCNRIRAVSS-VPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALL 119 Query: 120 RR-VKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 RR + FS + ++ G E++ + + LT EF +L L +P +V+SR Sbjct: 120 RRAYRDFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSR 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++L++ + + +DRTVD++IK +R K+ + + + + I T GMGY Sbjct: 180 EKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 16/237 (6%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + + +DE+ I D L++EG V V E G + ++ PD+++LD+ +P + G E Sbjct: 4 NIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLE 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C + P++ LTAR EE DRLLGL +GADDY+ KPFSPRE+ RV +LRR Sbjct: 64 VCDLIRQT-DDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 125 FSTPSP---------------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKS 169 S SP I + + ++S ++ + LT EF LL L Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182 Query: 170 PGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 PG+V+SR QL++ VW+ A D TV H++ LR K+ D + I T G+GY L Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 2/225 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + T+ +V+DE I + L+ G+ V G L A + PD+++LD+ LP + Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+ +L + +L LTARS+E+DR+ GL +GADDY+ KPFSPRE+ ARV +LRR Sbjct: 61 GMEITARLREK-SDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + S V+R H E++ A + L LT EF LL L ++ RV SR+ L++ Sbjct: 120 RRGKPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIE 179 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW DR VD ++ +R K+ A+ + + I T RG+GY Sbjct: 180 KVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRF 223 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 128/229 (55%), Gaps = 4/229 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q + + +VED+ IAD L L+ E + V G L + D +ILD+ LP + Sbjct: 3 QPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVD 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR+ A+ P++ +ARS EV R+LGLE+GADDY+AKPFS E+ ARV+ LLRR Sbjct: 63 GLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 122 VKKFSTPSPV----IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 V + S + + + ++ A + S L LT EF LL + PG+V+SR Sbjct: 123 VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+++VW + Y+ TV+THI LRAK+ A + I T G GY L Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 7 WLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELC 66 LV+D+ I + L+ GF V G L + + DVM+LD+ LP++ GF++ Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 67 RQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV-KKF 125 ++ LPV+ LTA +E DR++GL+ GADDY+ KPFSPRE+ +RVR +LRR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + ++R ++ ++ D L LT EF LL L P +V+SR+ L+D VW Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D RTVD H+ LR KL A N + T G GY Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRF 222 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 126/229 (55%), Gaps = 2/229 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M++ + +VEDE+ IA L L+ EG++V + G LD A + +++LDV LP + Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG E+ R+L PV+ LTAR D++ GL+IGA+DYV KPF E+ AR+R LR Sbjct: 61 SGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR 120 Query: 121 RVKKFSTP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + + +NE ++ D + LT EF LL +LK P +V +R+Q+ Sbjct: 121 QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQI 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + SVW VD +I+ +R KL + I+T RG+GY+++G Sbjct: 181 LSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIKG 228 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 132/233 (56%), Gaps = 6/233 (2%) Query: 1 MQR--ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLP 58 M+R ET+ ++ED++ I+ L L +EG+ V + G L + P ++++D+ LP Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLP 68 Query: 59 DISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 + GFE+CRQ+ +P++ ++AR ++D++ L +GADDY+ KPFSP E+ ARV++ Sbjct: 69 KVDGFEVCRQVRQQ-SEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSH 127 Query: 119 LRRVKKFS---TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 LRR +++ V+ +N + PL LT EF LL TL ++PG+V+S Sbjct: 128 LRRYHRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFS 187 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 ++QL + VW+ RTV HIK +R KL + I+T G+GY G Sbjct: 188 KEQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIG 240 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 6/231 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +E + +V+DE IAD + LQ E F V F + K+ D+ +LD+ +P IS Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G ELC+++ + P++ LTA+ E+D++ GL +GADDY+ KPF P EV ARV+ LRR Sbjct: 129 GLELCKKIRERY-NYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRR 187 Query: 122 VKKFS----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K+++ ++ LN+ + + L+LT EF +L L + G V S + Sbjct: 188 YKRYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAE 247 Query: 178 QLMDSVWEDAQDT-YDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +L +W+D + + T+ HI+ LR K+ + I T G GY + Sbjct: 248 ELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +V+DE + D + ++EGFAV G L + R + D++ILD+GLP I G Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F + RQ+ A PV+ LTAR++EVDR++GLE+GADDYV KPFSPRE+ ARVR LLRR Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 123 KKFSTPSPVI-----RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + S I +L+ + ++ D L L EF LL L PG+V++R+ Sbjct: 121 AEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTRE 180 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+ VW + RTVD HI+ LR+KL I+ + + I T G+GY Sbjct: 181 VLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 1 MQR-ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+R V LV+DE+ I + +L++E + + + G L+ +K+ PD++ILDV LP Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 I G+E+CR + +P+L L+A+ E +D+ +G +GADDY+ KPFSP E+ RV+ LL Sbjct: 61 IDGYEVCRTIRET-SKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALL 119 Query: 120 RRVKKFST------PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 RR + I G E+N + ++ P+ LT EF LL + + P +V Sbjct: 120 RRSFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQV 179 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++R+QL +W D T+ I+ LR K+ I T G+GY Sbjct: 180 FTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 132/226 (58%), Gaps = 1/226 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DE + + + L ++G+ + G L + + ++ILDV +P++ G+E Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV-K 123 +C ++ + ALP+L LTAR+E D++ GL+IGADDY+ KPF P E+ ARV LLRR Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 +T + + +++ ++ D P+ LT EF LLK LL +P +V++R QL+ + Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 W +RTVD+HIK++R KL+ + I T G+GY L+ + Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKEI 229 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 4/229 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M +T+ +V+D+Q IAD L L+ + F V + ++ D +ILD+ +P Sbjct: 1 MNAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGE 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +GF CR++ A +P+LFL+ARS +VD++ GL +G DDY+ K SP E+ ARV+ +LR Sbjct: 61 NGFAFCRRIRAK-SDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 119 Query: 121 RVKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 R P+ ++ GH LN +++ + LT E+ LL+ L+ P V+S QL Sbjct: 120 RSASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +D +W TV H+ LR K+ A D I G+GY G Sbjct: 180 LDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 3/228 (1%) Query: 1 MQRE--TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLP 58 M+ + +V ++ED+ IA+ + +++ G+ +V G L+ + PD + LD+ LP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 59 DISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 I G+ELC+++ + +P++ LT + E D++ GL+IGADDYV KPF P E+ AR++ + Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 +RR + V+ + +++ + + D + + E LL L P +V++RQQ Sbjct: 121 MRRADLLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQ 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D +W A + RT+D HIK +R KL + + I T RG+GY Sbjct: 181 LLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAKWT-IKTIRGVGYKF 227 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 E + +V+DE+ IAD + L+ EGF V F G L+ + D+ ILD+ LPDI Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF +C+++ + P++ LTA+ E++D+++GL IGADDY+ KPF+P EV ARV+T LRR Sbjct: 61 GFHICQKIREKYY-YPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119 Query: 122 VKKFSTPSP-------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 +++ I +N+ + S F +ALT EF +L L + G+V Sbjct: 120 YMRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVV 179 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++L ++VW + + TV HI LR K+ + + I T G+GY++ Sbjct: 180 PSEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 121/224 (54%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + ++EDE + L L+ EG+ V G L + + PD+++LDV +P + GF Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC +L L +P+L LTA+ + DR+ GL+ GADDY+ KPFS E+ ARVR +LRR ++ Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 +R G E++ L T E+ +L+ L ++PG SR++ +D VW Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 A RTVD HI +LRAK+ + I T G+GY L G Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 138/226 (61%), Gaps = 7/226 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 ++++ED++ I + L Y ++EGF V F G + +++ PD+++LD+ +P++ G E Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 66 CRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 C+ + + +P++ LTA+S E+D+++GLE+GADDYV KPFS RE+ ARV+ LLRR K Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 124 --KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 F T P + G +++ +++ P+ LT +F LL L+ S G+V SR +++ Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW +D YDRT+D HIK LR L+ + I T RG+GY Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYG---NCIKTIRGVGYKWE 226 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 127/229 (55%), Gaps = 5/229 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ + +VED++ I + L +EG+ G ++K R ++ILD+ LP + Sbjct: 3 EQIKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVG 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+E+ +++ PVL L+A+ EE D+++GL +GADDY+AKPF E+ ARV+ LRR Sbjct: 63 GYEVLQKIREKG-NTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRR 121 Query: 122 VKKFS----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 FS + +IR + E+N ++ D + LT EF +LK L++P +V+++ Sbjct: 122 YLNFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKN 181 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 QL S+W + + TV HI+ LR K+ + S I T G+GY L Sbjct: 182 QLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKL 230 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 127/224 (56%), Gaps = 3/224 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 R V +V+D+ +A+ L +L++EG+ G + ++ PD+++LD+ LP + Sbjct: 14 SRGRVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRN 73 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G ++C+ + +P++ LTA+ + +D + GLE GADDYV KPF P E+ ARVR LRR Sbjct: 74 GLQICQDIR-TQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR 132 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + + IG +++ PA Q++ P+ALT EF LL L + P +V++R+ L++ Sbjct: 133 GETGQAEN--LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLE 190 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 VW R V+ H++ LRAK+ + T RG+GY Sbjct: 191 QVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 111/228 (48%), Gaps = 1/228 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VED+ I +T+ L+ G G A + PD+++LD LP + Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G LC + PVL LTAR+EE R+ L GADDY+ KPFS +E+ ARV+ LLR Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + G ++ Q+ P+ L EF LL L PGRV+SR +L+ Sbjct: 129 RAYASGYRDCSPKNG-LLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELL 187 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + VW + RT+D H++ LR KL + T G+GY G Sbjct: 188 ERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAG 235 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M++ ++ +V+D+Q I + L QEGF V G L + ILD+ +P + Sbjct: 16 MEKNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHM 75 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G ELCR++ H LP++FL+A+S +VD+++G GADDY+ KPFS E ARV+ LR Sbjct: 76 DGIELCRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 134 Query: 121 RVKKFSTP-----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R F+ I I E++E + + + + LT+ E+ +L + + RV++ Sbjct: 135 RYTYFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFT 194 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++ +SVW++ + TV HI LR K+ + I G+GY + Sbjct: 195 IEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 124/234 (52%), Gaps = 7/234 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + LV+D+ I + L +EGF + G + A PD++ILDV LPD+ Sbjct: 1 MTGELILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFE+CR + +P+LFL+ R +++D+++G IG DDY+ KPFSP + A+V++ +R Sbjct: 61 DGFEVCRIIR-TKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIR 119 Query: 121 RVK------KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 R K K ++ + G ++ +++ P++L EF LL L ++ GRV+ Sbjct: 120 RYKELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVF 179 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 S + L DS+W RTV HI LR K+ I T RGMGY G Sbjct: 180 SAEHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 132/231 (57%), Gaps = 10/231 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR---KQVPDVMILDVGLPDISG 62 + +VEDE+ +A + L++EG VEV G L++ + PD+++LD+ LP++ G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+CR++ P+L LTARS E+DR+LGLE+GADDY+ KPFS RE+ ARV +LRRV Sbjct: 64 LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 123 K------KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 + + + I G ++ + +++ P+ LT EF LL L +PGRV+SR Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+ VW + DRTVDTHI LR KL I T G+GY Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M R + +VEDE I + + ++L+Q GF E +++ + PD+++LD LP Sbjct: 1 MAR-RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG 59 Query: 61 SGFELCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 SG + + L +PV+ LTAR EE DR+ GLE GADDY+ KPFSP+E+ AR++ + Sbjct: 60 SGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 +RR+ + VI + L+ + ++ + PL + EF LL + P RV+SR+Q Sbjct: 120 MRRISPMAVE-EVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQ 178 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L++ VW DRTVD HI+ LR L D + T RG GY Sbjct: 179 LLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHD-RMVQTVRGTGYRF 225 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 134/230 (58%), Gaps = 7/230 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +++DE+ IAD L L+++G V G ++KA++ +PD+++LD+ +PDI G+E Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE-MPDLIVLDIMMPDIDGYE 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ P++FL+A+ E+DR+ G +G DDYV KPFS +E+ AR+ LRR K+ Sbjct: 62 VCRKIRDT-VICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 125 F-----STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 ++ + ++ + ++ P+ LT+ EF +L+ L PG+V+S++Q+ Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + VW + TV HIK +RAK+ ++PD I T G+GY + Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEKV 230 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + +++DE + D + L ++GF V G L+ PD++ILDV LPD Sbjct: 1 MASEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDT 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G ELC+ L + + P+LFL+ + ++D++LGL +G DDY+ KPFSP E+ AR+ LR Sbjct: 61 NGLELCQNLRKITES-PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLR 119 Query: 121 RVKKFSTPSP-----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + + + ++ I ++ + D P+ LT EF +L L + P V+S Sbjct: 120 RNRILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFS 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 QL D +W RTV HI LR K+ + I T +G+GY L Sbjct: 180 LTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 6/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+R + +VED+ I + + L +EG+ +E GL ++K + + ++I+D+ +P + Sbjct: 1 MERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E R++ +P++ L+A+ E+ D+++GL +GADDY+ KPFS E+ ARV+ +R Sbjct: 61 DGIESMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIR 119 Query: 121 RV-----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R K + + G + + ++ L LT E +LK ++P RV++ Sbjct: 120 RAIYYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + Q+ DSVW + + TV H++ LR+K+ + I T G+GY L G Sbjct: 180 KVQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTG 232 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 V +VED+ + + L+ GF V G LD A + PD+++LD LP I G Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+CR++ + +P++ LTA +R+ GLE GADDY++KPFSPRE+ RV+++LRR Sbjct: 100 EVCRRIRSRG-DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSI 158 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 TP +G F L+ A I LALT EF LL LLK PG+ +SR+QL+ SV Sbjct: 159 GDLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSV 218 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 W TV ++ LR K+ + + T G+GY L Sbjct: 219 WGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLN 261 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 97/238 (40%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M + TV LVEDE+ I L L+QE F V E P L+ R+ D++ILDV +P Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + G+ CR++ +P+LFLTAR EE DR+LG E+GADDYV KPFSPRE+ RV+ LL Sbjct: 61 LDGWTTCRKIREF-SEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALL 119 Query: 120 RRVKKFS---------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 RR TP + L + L+L+ E+ LL L ++ Sbjct: 120 RRRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNA 179 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPD-LSPINTHRGMGYSLR 227 GRV SR L+D VW RTVDTH++ LR KL I+P S + T RG GY Sbjct: 180 GRVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFE 237 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 131/228 (57%), Gaps = 9/228 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEG-FAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 + ++ ++ED+ IA ++ Y L+QEG F V + G L + P++++LD+ LP + Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 61 SGFELCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 +GFE+CR+L +P++ LTAR++E D++ GL +GADDY+ KPFS RE+ AR+ + Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 LRR + TPS V G ++ + + LTR EF LLK L +S GRV +R+ Sbjct: 121 LRRTE--GTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREY 178 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D VW D RT+D HI+ +R KL I T G+GY Sbjct: 179 LLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRF 222 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + EDE I +V L++ G+ V E G LD +Q D+++LD+ +P++ G Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F +C Q + + ++ LTAR+ E D+++GL +GADDY+AKPFSP E+ AR+++LLRRV Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 123 K--KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + + + G F ++ A ++ + +T E+ LL +K+ +V SR +L+ Sbjct: 121 ETLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELL 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D+VW + +TVD +I+ LR K+ + I T G GY R Sbjct: 181 DAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWR 227 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQV-PDVMILDVGLPDI 60 ++T+ LVEDE +A + Y LQ+EG+ V G L++ ++ PD ++LD+ LPDI Sbjct: 9 AQKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDI 68 Query: 61 SGFELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 SG E+C+ L +PV+ +TA+ E+DR++G E+GADDYV KPFS RE+ R+R L Sbjct: 69 SGTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRAL 128 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 LRR ++ + +I ++ ++ + ++LT EF LL + GRV +R Sbjct: 129 LRRTERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDA 188 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+ VW D RTVDTH+K LR KL + T RG+GY R Sbjct: 189 LLSDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFR 234 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 119/221 (53%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVEDEQ +A ++ L F V + + D+++LD LPD G L Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C+QL +PV+ LTAR E D +LGLE GADDY+ KPFS E+ AR + LLRR Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + +I ++ + ++ FD PL+LT EF LL L + P +V+SR QL+D+VW Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D ++ TV++HI LR KL I + T G+GY Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 3/226 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED+ +A + L ++ + V++ G + D+++LDV LP + G Sbjct: 2 RILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCRQL + +L LTA+ + D+++GL+ GADDYV KPF +E+ AR+R LLRR Sbjct: 62 LCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + PV+ G L+ ++++ D L LT EF LL L++ R++SR ++D +W Sbjct: 120 NTALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLW 179 Query: 185 EDAQD-TYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +D + T+ +HIK+LR KL+ + I T GMGY L+ L Sbjct: 180 SAEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKAL 225 Score = 82.9 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +VED+ I + L+ G ++ E D + PD++ILD +P I+G Sbjct: 497 KARIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYING 556 Query: 63 FELCRQLLALHPA--LPVLF----LTARSEEVDRLLGLEIGADDYVAKPFSPREVCARV 115 ELC+ + LPV+F L+A + V+++ IGADD V+KP + A + Sbjct: 557 IELCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 134/240 (55%), Gaps = 12/240 (5%) Query: 1 MQRE---TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGL 57 M + ++ +V+DE I + LV L GF V G ++ K PD+++LDV L Sbjct: 6 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVML 65 Query: 58 PDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 PDI GF + R++ A PVL+LTAR + D+++GL +G DDYV KPFS EV AR+R Sbjct: 66 PDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 125 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 +LRR ++ P+IR+G E+NE + +S P+ L+ E+ LL+ L+ + GRV S+ Sbjct: 126 ILRRTQEQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKA 185 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKL------RAINPDLS---PINTHRGMGYSLRG 228 Q++D VW+ V+++I LR K+ A + I T RG+GY +R Sbjct: 186 QILDHVWQYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRA 245 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+DE + + L L +EGF V+ G L+ A D+++LD+ LPD+ G+++ Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR---V 122 C+++ + +L LTARSE D++ GL IGADDY+ KPF P E+ ARV +L+RR Sbjct: 76 CKKIREK-DHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + H + ++ D + T+ EF L +L KS R +SR++L++ Sbjct: 135 QSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNL 194 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +W D + R VDTHIK +R K + +PI T G+GY G Sbjct: 195 IWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNG 240 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 2/225 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + L+ED+ I ++ L +G V G L+ DV+++D+ LPDI GF Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E CR+L +P++ +TAR++ D + GLE GADDYV KPF +E+ AR+R LLRR + Sbjct: 79 ECCRRLRR-SSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSR 137 Query: 124 KFSTPS-PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 P+ VI I E+ A + L LTR EF LL L +P RV+SR+QL++ Sbjct: 138 SAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLER 197 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW R VD H++ LR K+ + T RG+GY ++ Sbjct: 198 VWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQ 242 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +E V +V+DE I L L G+ V G L+ +++PDV+ILD+ +P + G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + +C+++ +P++ LTA + DR+ GLE+GADDYV KPFSP+E+ AR+R +LRR Sbjct: 74 YGVCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT 132 Query: 123 KKFS-----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K + T S +I ++ QI + + LT EF LL+ L+ G+ +SR Sbjct: 133 NKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRA 192 Query: 178 QLMDSVWED--AQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ VW + R VD HI LRAKL + I T RG GY + Sbjct: 193 DILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 133/231 (57%), Gaps = 6/231 (2%) Query: 1 MQR--ETVWLVEDEQGIADTLVYMLQQEGF-AVEVFERGLPVLDKARKQVPDVMILDVGL 57 M R V +++DE+ I + + +L +EG V L + ++ PD++ILD+ L Sbjct: 33 MSRLHSKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIML 92 Query: 58 PDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 PD G+++C+Q+ + +P++FL+A+ EE D+++GL IG DDY+ KPFSP+EV RV+ Sbjct: 93 PDGEGYDICKQIRDI-SHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKA 151 Query: 118 LLRRVK--KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 LRRV + S +I+ G FELN+ A+++ + + LT E +L+ L+ P RV S Sbjct: 152 QLRRVSYLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVIS 211 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++ L +VW + D TV HI+ LR K+ + T +G+GY Sbjct: 212 KETLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 262 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M +T+ +V+DE I D L L+ +AV + PD+++LD LP Sbjct: 1 MIEKTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGT 60 Query: 61 SGFELCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 SG EL R+L +P++ LTA+ EE +++ GLE+GADDY+ KPFSPRE+ AR++ + Sbjct: 61 SGIELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 LRR P I++ L+ + +++ D P+ + E+ LL+ L RV++R Q Sbjct: 121 LRRTDSMGISEP-IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D VW +RTVD HI+ LR L D I T RG GY Sbjct: 180 LLDHVWGGNVYVEERTVDVHIRRLRKALSLEGHD-RFIQTVRGAGYRF 226 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 2/228 (0%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+R V ++ED+ I + + + + G++ G L+ + PD +ILD+ LP Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 ++G+E+C+ + +P++ LT + E D + GL IGADDY+ KPF P E+ ARV+T+L Sbjct: 61 LNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR + ++ + ++ ++ + + + E L L +P +V +RQQL Sbjct: 121 RRTILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQL 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +D VW + RTVD HIK +R KL S I T RG+GY Sbjct: 181 LDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRFE 227 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 3/225 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L+ED++ IA + L++E F V G + ++++D+ LP + GF L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK- 124 C ++ A +P++ ++A+ + D++ +GADDYV KPFSP E+ ARV+ +RR ++ Sbjct: 63 CEKIRA-SSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERS 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + ++ E++ ++ ++LT EF LL L PGRV+++++L +VW Sbjct: 122 YPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAVW 181 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 RTV H+K +R KL+ I T G+GY GL Sbjct: 182 NGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIGL 225 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M V +VEDE+ I D + L+ +G+ V G+ L+ Q + I+D+ +P + Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G + +L + PV+ LTA+SEE+D++LGL IGADDYV KPF+P E+ ARV + LR Sbjct: 61 DGITMVMKLRENY-DFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLR 119 Query: 121 RVKKF-------STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R K+ S + IG ELN ++ + +T EF +L+ L+K+PGRV Sbjct: 120 RYSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRV 179 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +S +++ + VW + D TV H++ +R K+ + + G+GY + Sbjct: 180 FSAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIE 232 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 1 MQRE---TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGL 57 M + ++ +V+DE I + LV L GF VE G ++ + P+++++DV L Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60 Query: 58 PDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 PDI GF + R++ +PVLFLTAR + D+++GL +G DDYV KPFS EV AR+R Sbjct: 61 PDIDGFTVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 +LRR ++ + +I++ E+NE + ++ P+ L+ E+ LL L+ + GRV S+ Sbjct: 121 ILRRTQEPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKS 180 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLS---------PINTHRGMGYSLR 227 Q+++ VW+ V+++I LR K+ I I T RG+GY +R Sbjct: 181 QILNHVWQYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIR 239 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +++DE+ + L +QEGF V V G L D +ILD+ LP I G Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC ++ + ++ LTA+ ++D++LGLE+GADDY+ KPF+ RE+ AR+RTL+RR +K Sbjct: 78 LCNRIRQQ-SDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEK 136 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + ++ + ++ + + LT EF +L L+++ GRV+ R+++ VW Sbjct: 137 GEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVW 196 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + RT+D H+K LR KL+ I I T G+GY R Sbjct: 197 GEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFR 238 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 3/230 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M T+ + +D+ I + + L+QEG+ V + G + A PD++I+D+ +P + Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E +++ + +P++ L+A+ + VD+++G ++G DDY KPFSP E+ RV+ +LR Sbjct: 61 DGLEASQKI-KMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLR 119 Query: 121 RVKKFSTPS--PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 R K V+ +F + + + + LT EF +L + P +++SR Q Sbjct: 120 RSKAVPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L++ +WE + + TV HI+ LR K+ I T G+GY Sbjct: 180 LLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEA 229 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 TV ++EDEQG+ L L++EG+ V GL L+ +KQ PD+++LD+ LP++SG Sbjct: 8 YTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGE 67 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+ R++ P+L LTA+ E +++ GL IGADDYV KP SPRE+ AR++T+LRRV Sbjct: 68 EIARKIRKEQ-ETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVG 126 Query: 124 KFST--PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 K +I G ++ A +I T ++LT+ EF +L TL P +V+SR+ L D Sbjct: 127 KEPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLAD 186 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++ + RT+DTHIK LR K+ I T G GY Sbjct: 187 RIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 4/231 (1%) Query: 1 MQRET--VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLP 58 M +T + +VED+ I L L+ EG+ V + G L +A + PD+++LDV LP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 59 DISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 +++GFE+ ++L PV+ L+A+ E D+++GL +GADDYV KPF +E+ AR++ + Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120 Query: 119 LRRVKKFSTPS--PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 LRR + P + G ++ A ++ TP+ LT EF LL L PGR ++R Sbjct: 121 LRRRYPSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++L+ W + RTVD ++ LR K T RG+GY Sbjct: 181 EELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DE IAD + L+ E + V + L+ K D+ ILD+ LP SG Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C+++ H P++ LT + EVD++ GL IGADDY+ KPF P E+ ARV+ LRR KK Sbjct: 64 ICQKIRDKH-TYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 125 FS----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 FS VI +N + + L+LT EF +L+ L ++ G V S + L Sbjct: 123 FSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLF 182 Query: 181 DSVWEDAQDT-YDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +W D + + T+ HI+ LR K+ + I T G+GY + Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+DEQ +A + L + GF G +D+AR+ PDV++LD+GLP++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ +L LTAR E D++ GL +GADDY+ KPFS RE+ RV +LRR + Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 125 FSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 +TP V + +G L+ A Q+ +T + LTR EF LL L PG+V +R L+ Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 VW+ +R VD HI LR KL I+T RG+GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 132/227 (58%), Gaps = 8/227 (3%) Query: 7 WLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELC 66 +VEDE +A + L++ G+ V + GL +D AR+ PDV+ILD+GLP I G E+C Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 67 RQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK-- 124 R+L V+ LTARS+EVD L+GL +GADDY+ KPFSPRE+ AR++ +LRR + Sbjct: 127 RRLRTFSDCY-VVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKT 185 Query: 125 -----FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 +T ++ G ++ A ++ D + LTR EF LL TL + P V+SR+QL Sbjct: 186 GQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQL 245 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +D VW + + VD HI LR KL + T RG+GY + Sbjct: 246 IDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q+E + +V+DE I L L G+ V G L RK+ P +++LDV +P + Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+ +C++L +P++ LTA E DR+ GLEIGADDYV KPFSP+E+ AR+R++LRR Sbjct: 64 GYGVCQELRKE-SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122 Query: 122 VKKFST-----PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 K +T S +I IG +++ Q+ + + LT EF LL+ L+ G +SR Sbjct: 123 ADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSR 182 Query: 177 QQLMDSVWED--AQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ VW + R VD HI LRAKL + I T RG GY + Sbjct: 183 ASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED+ IA TL L + +AVEV G D D+++LD+ LP + G Sbjct: 2 KILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC+++ + +P+L LT R D+ +GL+ GADDYV KP E+ ARVR LLRR Sbjct: 62 LCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGGV 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S P V+ G L+ + ++++ L+LT E+ LL+ L+++ RV+S ++D +W Sbjct: 122 TSQP--VLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + V THIK LR KL+A + T G+GY L+ Sbjct: 180 SYEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLK 222 Score = 106 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+D+ + L +L G + K PD++ILD+ +P +S Sbjct: 380 NKIKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMS 439 Query: 62 GFELCRQLLA--LHPALPVLFLT--ARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 G ELC+ + + +P+LFLT + +E V+++ +GADD+V+KP E+ R+ Sbjct: 440 GIELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRILN 497 Query: 118 LLRRVK 123 L RV+ Sbjct: 498 RLERVR 503 Score = 74.0 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 V + +D+ L +L Q G+ V + G + +A Q PDV++LD+ +P ++ Sbjct: 1072 NSPLVLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMN 1131 Query: 62 GFELCRQLLALHP--ALPVLFLT 82 G+E L +P++ + Sbjct: 1132 GWETMAGLKKCSDTKDIPIVICS 1154 Score = 43.6 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +R + ++ED+ +AD L + + + + G + ++K PD++ILD+ LP+ Sbjct: 1202 KRLKILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEAD 1261 Query: 62 GFELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAK 104 GF + L ++PV+ +A+ + L++G ++ K Sbjct: 1262 GFTVVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLGHTEFFTK 1306 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 1/223 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +VED+Q I L ++L+ E + G ++ ++ D++ILD+ LP G Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F + +++ +PV+ LTAR EE+D++ G +G DDY+ KPFSP E+ R++ +LRR Sbjct: 61 FSVLKEI-KNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRY 119 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 +K +++ G +N ++ P+ LT E+ LL+ L K+P R+++++Q+MD Sbjct: 120 RKGRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDR 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 +W D V ++ LR K+ I T G+GY Sbjct: 180 LWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + EDE I ++ L++ GF V G + ++ DV++LDV +P++ G Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 FE C + L + ++ LTAR+ E D++ GL GADDY+AKPFSP E+ AR++ LLRRV Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 123 KKFSTP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 +K S ++ G F ++ A Q++ + + LT E+ L+ L+++ V SR L+D Sbjct: 121 EKVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLD 180 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW +TVD +I+ LR K+ I T G GY R Sbjct: 181 AVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWR 226 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + + +D I D L ++E + G + R+ P V++LDV +P G Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +E+CR++ A +PV+ +TAR E+ ++++GL+IGADDY+ KPFSP EV AR+R +LRR+ Sbjct: 61 YEVCRKIRAK-SDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRM 119 Query: 123 ---KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + T V+ I + E+N + T ++LT+ E + TL +P +V++R L Sbjct: 120 TKKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +DS+W RTVD+HIK LRAKL + I T G+GY Sbjct: 180 LDSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFE 227 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDK--ARKQVPDVMILDVGLP 58 M ++ + L+ED+ +A+ + L + V G LD A+++ D++ILD+ LP Sbjct: 1 MSKQ-ILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLP 59 Query: 59 DISGFELCRQLL----ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCAR 114 D+ G ++C+++ + +P++ LTA+ + DR+LGLE+GADDY++KPF PRE+ AR Sbjct: 60 DMDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLAR 119 Query: 115 VRTLLRRVKKFS---TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPG 171 +R +LRR ++ + + S + G + + +++ D P+ LT ++F LL G Sbjct: 120 IRAVLRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAG 179 Query: 172 RVWSRQQLMDSV-WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +V +R+QL ++ +D+ D DR +D HI LRA + I T RG+GY Sbjct: 180 KVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED + +A+ + L+ EGF V++ G LD A D +ILD+ LP +SG E Sbjct: 2 KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61 Query: 65 LCRQLL-ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +CR L +P+L LTA +R+ GL +GADDY+ KPF RE+ ARVR L+RR + Sbjct: 62 ICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRNQ 121 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 ++ G +N ++S PL L+ EF LL+ +++PG V+SR+Q++D + Sbjct: 122 VV--RQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKL 179 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 WE + VD ++ LR KL+ D I T +GY L+ Sbjct: 180 WESGFEPRSNIVDVYVLYLRKKLKPFGYDEK-IETVHNIGYRLK 222 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 298 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 135/226 (59%), Gaps = 2/226 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +W+VED + ++ L L+Q FAV+ RG ++ + R + PD+++LD+ LP Sbjct: 8 MINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGA 67 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G LCR++ A+P++ +TA+ EE+DRLLGLEIGADDYV KPFSPREV ARV+ +LR Sbjct: 68 DGVTLCREIRTF-SAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLR 126 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + + I IG L I+ L +T+ EF LL + PG+V+SR +L+ Sbjct: 127 RGGEEPHEAA-IHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDELI 185 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + YDR +D HIK LR KL A P L PI + G+GY Sbjct: 186 AKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKF 231 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 139/226 (61%), Gaps = 3/226 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T++++ED+ IA + + LQ G+A+ ++ +L A +Q P + +LD+ +P G Sbjct: 3 QTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGL 62 Query: 64 ELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 ++CR+L A ++P++F+TAR+ E DR+LGLE+GADDY+ KPF+PRE+ ARV+ +LRR Sbjct: 63 DVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRR 122 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 ++ STPS +I ++ A Q+ T EF LL L + PGRV+SR L+D Sbjct: 123 FERPSTPS-LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLD 181 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW DA+ R+VD +++ +R K+ + + + T RG GY Sbjct: 182 AVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 5/230 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +++DE I D +L++EGF V+ E G + + PD+++LD+ LPD SG Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++LC++++ +PV+ ++A+ E +D++LGLE+GA+DY+ KPF RE+ AR++ +LRR Sbjct: 61 YDLCKEIVKQ-SNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRY 119 Query: 123 KKFSTP----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + + + G E+N + T + LT E+ +L+TL K P ++++R + Sbjct: 120 EHNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDE 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L++ VW R+VD I LR K+ + + T G GY L G Sbjct: 180 LLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGG 229 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 5/230 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ V +VEDE IA+ + L F + G + ++ PD +ILD+ LPD Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+CR++ H + +L L+AR + D++LGL GADDY+ KPFS E+ AR+ LR Sbjct: 61 DGIEICRKIRE-HSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLR 119 Query: 121 RVKK----FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 R + V+ I + +N+ + P+ L+ EF LL L K+ +V+S+ Sbjct: 120 RQDRWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSK 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 QL+D+VW + T+ +I+ +R K+ + T G+GY Sbjct: 180 SQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +VEDE IA + L++EGF V+ RG L D +LD+ LP G Sbjct: 47 RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGIS 106 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R L +LP+L L+ARSE D++ GL GADDY+ KPFS E+ AR+R L+RR Sbjct: 107 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 166 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V ++G+ LN ++ + LT EF +L+ L+++PGRV++R Q+ + VW Sbjct: 167 IGL--SVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW 224 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 D VD +I+ LR K+ + I T RG+GY + L Sbjct: 225 NYHFDPGTNLVDVYIQKLRKKIDE-GEEQKLIQTVRGVGYKIEAL 268 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 135/231 (58%), Gaps = 7/231 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + +V+DE+ I + + + L++EG+ V G L A++++PD+++LD+ LP I Sbjct: 1 MPNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGI 60 Query: 61 SGFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 GFE+ R++ A+ +P++ LTA+ EE D + GLEIGA+DY++KPFSPRE+ AR+R + Sbjct: 61 DGFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGI 120 Query: 119 LRRVKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 LRR + P+ + G ++ ++ L LT EF +L L+ G V++R Sbjct: 121 LRRRTRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 Q++D+V + +R+VD I LR KL P I T RG+GY R Sbjct: 181 GQIVDAVHGENYAVTERSVDVTIAGLRKKL---GPCADFIETVRGVGYRFR 228 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 130/231 (56%), Gaps = 8/231 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +T+ ++ED+ I + + L ++ + G L + PD++ILD+ LPDI G Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+CR + P+ +TAR+EE+DR++GLE+GADDY+ KPFS RE+ RV RR Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 123 KK-------FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 K +IR G +++ +++ D + ++R EF +L+ + SPG+V+S Sbjct: 121 DKKAGIKPNVGASGEIIR-GALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFS 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R+ ++++VW D ++R +D+H+K +R+KL + I T G+GY Sbjct: 180 REMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRF 230 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M +T+ +V+DE I + + L+ G+ E + PD+++LD LP Sbjct: 1 MVGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGT 60 Query: 61 SGFELCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 SG EL R+L +P++ LTA+ EE +++ GLE+GADDY+ KPFSPRE+ AR++ + Sbjct: 61 SGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 LRR + +P I +G L+ + +++ P + E+ LL+ + R ++R Q Sbjct: 121 LRRTGPGDSEAP-IEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D VW +RTVD HI+ LR L + + + T RG GY Sbjct: 180 LLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRF 225 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + L+ED+ + + L Q+ +AV+ G L+ A+ DV++LD+ LP + G Sbjct: 2 KILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGIT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR+L + P+L LTA++ D ++GLE GADDY+ KPF E+ AR++ L RR ++ Sbjct: 62 VCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQQ 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+R + LN+ ++++ L LT E+ LL+ L+ P RV+SRQ ++D +W Sbjct: 122 V--LPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + T+ +HIK LR KL+A+ + I T G GY L Sbjct: 180 TLDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221 Score = 88.7 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 2/110 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ L++D+ + L L GF V PD++ILD+ +P SG Sbjct: 509 TLMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLN 568 Query: 65 LCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVC 112 LC+ + ++P+LFL+ + L GAD Y+ K + E+ Sbjct: 569 LCQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+D+ + D + LQ+ G+AVE+ G L ++ PD+++LD+ LP + G E Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK- 123 +CR+L +PV+ LTA EE DR++GLE GADDYV KPFSPRE+ RV ++LRR + Sbjct: 70 VCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 V+ G L+ A + + LALT EF LL LL+ PGR +SR +L++ V Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 W + TV H++ LR K+ INT G+GY Sbjct: 189 WGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYR 229 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +R V +V+DE + + + L E V GL L R PD+++LDV +P + Sbjct: 5 KRPVVLVVDDEPRMRELIRLYLAAEC-TVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLD 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G++ +++ A+PV+ LTAR DR+ GL +GADDY+AKPF RE+ ARV+ +LRR Sbjct: 64 GWQTLQRIREE-SAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRR 122 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + IR G + + PL LT EF LL L PG+V+SR++L+D Sbjct: 123 SAGQVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLD 182 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +W RTVD HIK LR KL I T G+GY Sbjct: 183 RIWGPDFQGDARTVDAHIKNLRDKL---GEGAGLILTVWGVGYRF 224 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +V+D++ + + L G+ V G+ L+ + +ILDV +P + G Sbjct: 10 KIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDG 69 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 FE+ +QL +PVL LTA EE DR++GLE+GADDY+ K FS RE+ AR+R + RR Sbjct: 70 FEMLKQLRKQ-SDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRH 128 Query: 123 K-------KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + K + G E++ A PL LT E+ LL TL K P RV S Sbjct: 129 RLSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLS 188 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R QL+D+V + D +DR+VD HI +LR KL + I T R +GY Sbjct: 189 RDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFN 240 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 3/230 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + +D++ + L+ + E F V + G L + ++ PD+M+LD+ +P I Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFE+CR+ +P++FL+A+ +E DRL+GL +GADDYV KPF RE+ ARV++ LR Sbjct: 61 DGFEVCRRARQF-TDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLR 119 Query: 121 RVKKFS-TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 R + + I +++ ++ ++LT EF LL L +P RV+SR QL Sbjct: 120 RRRGEVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQL 179 Query: 180 MDSVWEDA-QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 ++ A + +RT+DTHI+ LR KL I T G+GY +G Sbjct: 180 LEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V + +DE+ I + L L+++G + GL L D+ I+D+ +P I G+ Sbjct: 3 RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 L R++ + +PV+ L+A+SE D++LGL++GADDY+ KPF+ EV ARV+ LRR K Sbjct: 63 LVRKIRENY-DMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNK 121 Query: 125 FSTPSPV-----IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + G LN + + + LT E+ +L LL++ G+V++++Q+ Sbjct: 122 SMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQI 181 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + VWE+ D + HI LR K+ + + I T RG+GY L Sbjct: 182 FEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKL 228 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED+ + L L + V+V + G D++ILD+ LP++ G Sbjct: 2 KILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC++ A +P+L LTA+ ++ GL+ GADDYV KPF P E+ AR+R LLRR Sbjct: 62 LCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + P P++ G LN ++++ PL LT E+ LL+ LL++ V+S ++L+D +W Sbjct: 120 SNNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + TV +H++ LR KL A I T G GY L+ Sbjct: 180 SSEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKA 223 Score = 102 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 5/126 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 V +++D+Q TL +L+ GF V + PD ++LDV +P I+GF Sbjct: 526 NKVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGF 585 Query: 64 ELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 ELC+ L + LPVLFL+ ++ + +G DDY+ KP E+ R+ LRR Sbjct: 586 ELCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642 Query: 122 VKKFST 127 +++ Sbjct: 643 LQRVRA 648 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 5/230 (2%) Query: 1 MQRET-VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+R T V +V+DE+ I + L+ EG+AV G L + D ++LDV +P Sbjct: 1 MERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPG 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 SG+++ R++ + +PVLFLTAR E+ D++ GL +GADD++ K +P EV AR++ +L Sbjct: 61 PSGYDVLRRIRE-NRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVL 119 Query: 120 RRVKKFS-TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 RR ++ P V+ G ++ A ++ P+ LT EF LL+ + P +V++R+Q Sbjct: 120 RRYRRGEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L +W + TV HI LR K+ + I T G+GY G Sbjct: 180 LFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDG 227 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 V +V+DE I D + L+ GF V G L +A PD++ILDV LPD GF Sbjct: 21 PRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGF 80 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+CR+L A + V++LTAR D++ GL G DDY+ KPF+ E+ ARVR +LRR + Sbjct: 81 EVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTR 140 Query: 124 KFSTPSP----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + ++ EL+ A + D P+ L+ EF LL+ L +P RV SR Q+ Sbjct: 141 RPAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQI 200 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + +VW+ D VD ++ LR KL P I+T RG GY+LR Sbjct: 201 LAAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPP--LIHTQRGFGYALR 246 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V ++EDE IA++L L EG V V G L +Q D++ILD+ LPDI G Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR+L A LP++ LTAR E +R+ GL++GADDY+ KPFS E+ ARV + RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRA-G 136 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S P V+++ LN +++ + LT EF LL+ ++ P RV++RQ L+ VW Sbjct: 137 ISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVW 196 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V+ HI LR K+ + I T G+GY+LR Sbjct: 197 GFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTLR 237 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 102/223 (45%), Positives = 133/223 (59%), Gaps = 5/223 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 R V LVEDE IAD + L ++GF V + G L AR+ P V +LD+ LP + Sbjct: 7 HRGLVLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLP 66 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR+L PV+FLTAR +EVDR++GLE+GADDYV KPFSPRE+ ARVR +LRR Sbjct: 67 GTEICRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRR 126 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 V P I +G L+ ++ P+ LT EF LL L+ PGRV++R++L+ Sbjct: 127 VAGPPPGRPRI-VGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLA 185 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 VW A RTVD H+ +RAKL S I THRG+GY Sbjct: 186 GVWGYAVPAGTRTVDVHVAQVRAKLGPE----SVIRTHRGVGY 224 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFA-VEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +V+DE+ I + L +L++EGF + G + R+ PD+++LD+ LPD+ G Sbjct: 11 KKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDG 70 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + +C Q+ +P+ FL+A++E++D++LGL IG DDY+ KPFSP+EV +++ RR Sbjct: 71 YSVCEQIRQFTF-VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + + G ++E + T L LT EF +L L+K+P +++S+ +L ++ Sbjct: 130 QYKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEA 189 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW + D + H++ LR K+ + + T RG+GY L Sbjct: 190 VWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLN 234 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 4/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 RE + ++ED+ I+ L L+ EGF V G L+ A+ D+++LDV LP +S Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+++ +P++ LTA+ E D+++G + GADDY+ KPFS E+ AR++ LLRR Sbjct: 61 GMEVCKRIRET-SQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQIS--WFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 KK + +N ++ + + L++ EF LL L+ + G V SR ++ Sbjct: 120 TKKSVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKI 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ VW D +D +IK LR K+ + I T RG+G+ + Sbjct: 180 LEEVWGFDYIGNDNILDLYIKYLRDKIDR-PYERKFIQTVRGIGFIFK 226 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 E + +++DEQ IAD L L+ E + V F + D+ ILD+ LPD++GF Sbjct: 20 EKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGF 79 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 LC+ + + P++ LTA+ EE D++ GL +GADDYV KPF P EV ARV+ LRR K Sbjct: 80 SLCQLIRKKY-TYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYK 138 Query: 124 KFSTP------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K+S + LN + ++LT EF +L LL S G V S + Sbjct: 139 KYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIE 198 Query: 178 QLMDSVWEDAQDT-YDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +L +VW+D + T+ HI+ LR KL + I T G+GY + Sbjct: 199 ELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 2/226 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VED++ +A L L+ EG+ V + G L+ R+ ++ILD+ LP + Sbjct: 1 MNNP-ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRM 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG E+C++L + + P++ LTAR + D++ GL +GADDY++KPF+ E+ AR+ +LR Sbjct: 60 SGLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLR 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + S PS + +G E++ + L L+ EF +L+ L +S G+ R+++ Sbjct: 120 RTHQ-SKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIY 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW +RT+D HI LR+KL + I T G GY Sbjct: 179 QEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 7/232 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + +VED+ I D L ++ VE GL L+KA+ + D+++LD+ +P + Sbjct: 6 MANQ-ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKL 64 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G E+CR+L P++ +TA++EE+D++LGLEIGADDY+ KPFS RE+ AR + ++R Sbjct: 65 NGVEVCRELRKTK-NTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMR 123 Query: 121 RV-----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + + + + G ++N +++ + L+ EF LL L PGR +S Sbjct: 124 RSDAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYS 183 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R +L+D +W Y+ TV++HI LRAK+ + I T G+GY Sbjct: 184 RSELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFN 235 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 5/230 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +V+DE+ I + L L+ EG+ V + G L K+ +M+LDV +PD+ Sbjct: 1 MNNNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE+C ++ + +P+L L+A+ E++D++ G+ GADDYV KPF+ E+ R+R L RR Sbjct: 61 GFEVCSKVRERY-NIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRR 119 Query: 122 VK----KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K +IRI +++ +I+ + ++LT EF +L L + GRV+S + Sbjct: 120 TYFLNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAE 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ + VW++ + TV H+ LR KL I+T G+GY + Sbjct: 180 EIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +VED+ IA+ L GF VE G L AR+ D+++LD+ LP + G Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F +CR+L + +PVL +TAR EEVD L GL +GADDY+ KPF+P E+ ARVR+ + R Sbjct: 61 FAVCRELRR-YKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARY 119 Query: 123 KKF----STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 ++ V++ G E+ A ++ + TR EF LL L + P V+SR+ Sbjct: 120 ERILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREA 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L + VW TV HI +R K+ + T RG GY R Sbjct: 180 LFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 89/258 (34%), Positives = 127/258 (49%), Gaps = 36/258 (13%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE IA+ + L +EGF + G LD+ R PD++ILD+ +P + G E+ Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 66 CRQLLALHP-ALP-VLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV- 122 C ++ + P ++ LTAR EE+DR++GL GADDY+ KPFSPRE+ ARVR +LRR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 123 KKFSTPSPVIRIGHFELNEPAAQIS---------------------------------WF 149 + P + HF ++ S Sbjct: 123 RGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLEIA 182 Query: 150 DTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAI 209 PL LT EF LL T + PGRVW+R QL+D +W + +R VDTHI LR K+ Sbjct: 183 QIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPD 242 Query: 210 NPDLSPINTHRGMGYSLR 227 + + T G+GY Sbjct: 243 PSAPTFVKTVVGVGYRFE 260 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+D+ I + + +QE F V + + PD+++LD+ LPD SG + Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + ++L + +PV+FLTAR ++D +LGLE+GADDY+ KPF+PR + AR++ + RR + Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+++G E++ + + L R EF LLK ++++PG+V++RQ+++D VW Sbjct: 122 GPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVW 181 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 RTVD HI LR K+ + I T RG+GY L Sbjct: 182 GMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKL 218 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 4/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q+ V +V+D+ + L L+ G+ V G ++++ + P ++ILD+ +P Sbjct: 3 QQYPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKD 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+ R L H +PV+ LTA+ E+ DR++GLE+GADDY++KPF+PRE+ AR++ +LRR Sbjct: 63 GLEVLRDLR-PHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRR 121 Query: 122 VKKFSTPSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 K +P I + L+ ++ L L+ EF LLK L+ +PGR +R Sbjct: 122 AKGPENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDD 181 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 LM SVW + +DR++D HI LRA + S I T G GY Sbjct: 182 LMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ + +V+D+ I + LQ+EG+ E + ++ PD+ +LD+ LP + Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G+E CR++ A P++ ++AR EEVD++LGLE+G+DDY+ KPFSPRE+ ARV L+ Sbjct: 61 NGYEFCRRIRA-GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQ 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R K+ + + I L++ + F + +T EF +L L + P R +SR +L+ Sbjct: 120 RWKQMKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +W DR VD I+ +R KL I + T G GY LR L Sbjct: 180 SLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRLRTL 223 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +VEDE A L L +EG+AV+V G + +A + D ++LD+ LP + GFE Sbjct: 31 RVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGFE 90 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR+L PVL LTAR + DR+ GL+ GADDY+ KPFS E+ AR+R L+RR Sbjct: 91 VCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR--G 148 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+RIG L+ ++ +PL L+ EF LL L++ P V +R ++D VW Sbjct: 149 AVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVW 208 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + A D VD +++ +R K+ I S I T RG+GY LR Sbjct: 209 DFAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRLR 250 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 7/229 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +++DE I + + L EG+ V G ++ ++ V++LDV +P I GF+ Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV-- 122 +C ++ + +P++ L+A+S++VD++ GL GADDY+ KPF+P E+ ARV++ +RR Sbjct: 63 VCMKIRKDY-NIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVF 121 Query: 123 ----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 S +I +N+ ++ + L LT E+ +L L + G V+S + Sbjct: 122 LNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAED 181 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + VW++ + TV HI LR K+ + I T G+GY + Sbjct: 182 IFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED++ A L +L + +AVEV G+ + + D+++LDV LP + G Sbjct: 2 KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCRQ+ + +P+L LT ++ +GL+ GADDYV KPF E+ ARVR LLRR Sbjct: 62 LCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 +T P++ G+ +L+ + ++ + L+LT E+ LL+ L+ RV+S +++ +W Sbjct: 120 GTTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + V THIK LR KLR + T G+GY L+ Sbjct: 180 SYEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKA 223 Score = 104 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 6/136 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V V+D+ I L +L G V + + R PD++ILDV +P +G E Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 65 LCRQLLA--LHPALPVLFLTAR--SEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 LC+ + LP+LFLT E V+++ +GADD+V+KP E+ R+ L Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRIINRLE 499 Query: 121 RVKKFSTPSPVIRIGH 136 RVK S IG Sbjct: 500 RVKLLHKVSESRGIGE 515 Score = 83.3 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V + +D+ I L +L+Q G+ V G + A Q PDV++LD+ +P ++G+E Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 66 CRQLLALHPA--LPVLFLT 82 L +P++ + Sbjct: 1441 MAMLKESTETKHIPIVICS 1459 Score = 49.0 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 12/125 (9%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +R + +VED+ +A+ V + ++ + G + +++ PD++ILD+ LP+ Sbjct: 1499 RRVRILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETD 1558 Query: 62 GFELCRQLLALHP--ALPVLFLTARS-EEVDRLLGLEIGADDYV------AKPFSPR--E 110 GF + L +PV+ +A+ +E +R L++G +++ K F R E Sbjct: 1559 GFAVVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIE 1617 Query: 111 VCARV 115 + R+ Sbjct: 1618 LLQRI 1622 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 5/230 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+D+ + L L ++GF V + ++ +M+LD+ LP Sbjct: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +CR+L + +P++ +TA+ EEVDR++GLEIGADDY+ KPF+PRE+ AR+R +LRR Sbjct: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 Query: 122 VKK-----FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 S VI G F+LN ++ D P+ LT EF +LK L+ P SR Sbjct: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +LM+ +R++D I LR + I T G+GY Sbjct: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 124/233 (53%), Gaps = 12/233 (5%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 T+ +VED +A+ LV L G+ V G L ++ PD++ILD LP + G Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+ R + PVL LTARSEE D ++GLE+GADDY+ KPF RE+ ARVR LLRR + Sbjct: 66 EVLRTIRQTKS-TPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQ 124 Query: 124 K--------FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + + V+R G L+ ++ L LT EF +L LL++PGR +S Sbjct: 125 RIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFS 184 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 R L+D++W + DR+VD + LR KL I T G+GY L+ Sbjct: 185 RNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFG---DAIETVWGLGYRLQA 234 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 99/224 (44%), Positives = 134/224 (59%), Gaps = 4/224 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 QR V +VEDE IAD + L ++GF V + G+ L AR+ P +LD+ LP ++ Sbjct: 7 QRGLVLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLA 66 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR+L PVLFLTAR +EVDR++GLE+GADDYV KPFSPRE+ ARVR +LRR Sbjct: 67 GTEICRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRR 126 Query: 122 VKKFSTPSPVIR-IGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 +R +G L+ ++ P+ LT EF LL L+ PGRV++R +L+ Sbjct: 127 TVGVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELL 186 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 +VW A + RTVD H+ +RAKL I THRG+GY Sbjct: 187 AAVWGYAAHSSTRTVDVHVAQVRAKLGGAAG---VIRTHRGVGY 227 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 132/224 (58%), Gaps = 3/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + L+ED++ +A L+ L Q+ +AVE+ E G + A+ D+++ DV LP + G Sbjct: 2 RILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGIT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC++L + + P+L +TA+ E DR+ GL+ GADDY+ KP + RE+ ARVR LLRR Sbjct: 62 LCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + PV+ +G L+ ++++ + L LT E+ LL+ LL++P RV+SR +++ +W Sbjct: 120 DTPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + TV +HIK LR KL+ + + I G+GY L+ Sbjct: 180 TFDDPPQEETVKSHIKGLRHKLKVVGA-VDWIENVYGLGYRLKS 222 Score = 106 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + V +V+D+ I L ML+ G + + L + + PD++ILDV +P ISG Sbjct: 499 KVNVLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISG 558 Query: 63 FELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 ELC+ + LP++FLTA E G DDYV KP E+ AR+ L Sbjct: 559 IELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLE 618 Query: 121 RVK 123 R + Sbjct: 619 RSR 621 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + + + +D + +T+ L+ + G L+K + PD++ILD+ +P I G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+C+++ + +P++ LTA+ EE+DR++GLEIGADDY+ KPFSPREV R++T+ RRV Sbjct: 65 EVCKEIRKI-SNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVG 123 Query: 124 KFSTPSPV----IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + + + +F ++ +I + +T E +L L + GRV SR+++ Sbjct: 124 NANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEI 183 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +D VW R VDT IK +R K+ S I T G+GY L Sbjct: 184 LDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKFEVL 232 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 2/225 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED++ +A+ L +L +AVE+ G + D+++ DV LP + G Sbjct: 2 RILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGVG 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC+QL + +P+L LT + DR +GL+ GADDYV KPF P E+ ARVR LLRR + Sbjct: 62 LCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE- 120 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + P+++ + +L+ A ++ + D L LT E+ L++ ++++ RV+S +++ +W Sbjct: 121 -AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + V THIK LR KL+A I T G+GY L+ L Sbjct: 180 TYEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPL 224 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 16/160 (10%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+D+ I +T+ + + G V + + PD+++LDV +P+I Sbjct: 486 KEARIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIG 545 Query: 62 GFELCRQLLA--LHPALPVLFLTARSE--EVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 G +LCR + LP++FLTA +E V+++ GADD+++KP E+ R+ Sbjct: 546 GIDLCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYA--SGADDFISKPIVGPELVVRILN 603 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFD--TPLAL 155 L R + S ++ A +S + L L Sbjct: 604 RLERTRLQRRLS--------TIDPLARVLSRHESTHALEL 635 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 2/227 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + +V+DE I D L L+ G+ V G + + PD++I+DV LPD+ Sbjct: 25 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 84 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SGF ++L PV+FL+AR D++ GL +G DDYV KPFS E+ ARV +LR Sbjct: 85 SGFAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILR 144 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R K IR+G +++ + ++ + L+ EF LL+ + +P RV S+ Q++ Sbjct: 145 RT-KIDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQIL 203 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW+ D V+++I +R KL A + + + I+T RG GY +R Sbjct: 204 GHVWDYDFDGDSSIVESYISYIRRKLAAYSSE-TIIHTKRGFGYIMR 249 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 295 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +TV +VED G+ D + L++ G+ V V G L +AR PD+++LDV +P + G Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E R+ A +PV+FLTAR E+D++LGLE+GADDYV KPFS E+ ARVR LRR Sbjct: 82 LEFLRRFRATE-QVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS 140 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + P+ V+R G EL+ + LTR EF L+ L++PGRV++R + + Sbjct: 141 SEP-LPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLE-LLE 198 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ +RT+D H++ LRAK+ A I T G+GY L Sbjct: 199 QLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLN 243 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED+Q +A+ + L+ + + VE+ G L+ A D+++LD+ LP + G + Sbjct: 2 KLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGIQ 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 C+Q P+L +T + + ++ L+ GADDY+ KPF+ +E+ ARVR LLRR Sbjct: 62 FCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGGL 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 STP +++ G LN + Q+++ + LT E+ +L+ L++ R++S+ L++ +W Sbjct: 122 SSTP--LLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + + V T IK+LR KL+ + I T G+GY L Sbjct: 180 SFDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLN 222 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+D+ + + + L+ GF++ + E D + PD++ILDV +P+ISG E Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 65 LCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARV 115 LC+ + LP+LFL+ E G + GADDY+ KP E+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 46.3 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+++ + ++V + G +V + + PDV++LD+G PD Sbjct: 371 KNHHLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDRE 430 Query: 62 G--FELCRQLLALHPALP 77 EL + + L P +P Sbjct: 431 EICLELLKDIRQLIPPIP 448 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + + ++ED+ IA + + L+ EGF E G L AR+ PD ++LD+ LP I G Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 64 ELCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 + R + A PV+ +TA+ EE DR++GLE+GADDY+ KPF P+E+ ARV+ +LRR Sbjct: 63 TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + + IG ++ + ++ P LT EF LL L++ GRV R+ L++ Sbjct: 123 RETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLN 182 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW D + DRTVD HI+ LR K+ + T + +GY R Sbjct: 183 TVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFR 225 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + L+ED+ + D LV L+ + + V+ G D A+ D++++DVGLP G Sbjct: 2 KILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGIT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCR+L A +P+L +TA+ +VDR+ GL+ GADDY+ KP E+ ARVR LLRR Sbjct: 62 LCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 T +P++++G+ +L+ + Q+++ + L LT E+ LL+ L+ PG+V+SR QL++ +W Sbjct: 120 SETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + +V H+K LR KL+A + I G+GY L Sbjct: 180 TFDDPPLEESVKAHVKGLRQKLKAAGA-VDWIENIYGIGYRLN 221 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V LV+D+ + +V +LQ G + L + PD++ILDV +P SG E Sbjct: 381 NVLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIE 440 Query: 65 LCRQLLA--LHPALPVLFLTA-RS-EEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 LC+ L + +LP++FLTA R E + ++ +GADD+V KP E+ R+ L Sbjct: 441 LCQSLRSDPEWQSLPIIFLTAHRDRETIQQV--FTVGADDFVTKPVVVPELLTRIINRLE 498 Query: 121 RVK 123 R + Sbjct: 499 RTR 501 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + L ED+ G+ TL LQ EG+AVE + G L +A Q D+++LDV LP S Sbjct: 1 MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF++C++L +P+L LTAR E VD+++GL+ GADDY+ KPF E+ AR+ LLRR Sbjct: 61 GFDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRR 120 Query: 122 VK-KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + S + ++G ++ A+++ P+ L+ E+ LL L+ G +R+ L+ Sbjct: 121 APVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLL 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW + T RTVD H+ LR KL + T RG+GY L Sbjct: 181 TQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + ++ED++ IA L L+ + V++ G+ + A+ D+++LD+ LP + G Sbjct: 2 RILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGIT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC++L A + +L LTAR ++++GL+ GADDY+ KPF E+ AR+R L RR ++ Sbjct: 62 LCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQE 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 T ++ G +L+ +++ + PL+LT E+++L+ LK+P +V +R ++D +W Sbjct: 122 --TRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 E + + + TV THI LR KLRA+ I T G+GY L Sbjct: 180 EFDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + ++EDE IA+ L + L+ G+ V G L + + PD+++LD+ LP +SG Sbjct: 3 HKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGT 62 Query: 64 ELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 ++C+ + +P++ LTAR +EVDR+LG E+GADDYV KPFSPRE+ R++T+LRR Sbjct: 63 DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + A + LT EF L +++ G+V SR+QL+ Sbjct: 123 NVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQLLS 182 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + W + Y RTVDTH++ LR KL P + T RG+GY ++ Sbjct: 183 NAWGYEFEGYSRTVDTHVRRLRKKL---GPYADWLETVRGIGYRMK 225 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 8/234 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M +E + +V+DE+ I + L L+++G+ V E G L+ PD+++LD+ LP I Sbjct: 1 MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60 Query: 61 SGFELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G E+ R + P+L L+A+ EE D + GLE+GADDY+ KPFSP+ + AR+R++ Sbjct: 61 DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120 Query: 119 LRRVKKFSTPSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 LRR + + P I + ++ + + LT EF +L L PG V++ Sbjct: 121 LRRQQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 R Q++D + + DR+VD I LR KL I T RG+GY R + Sbjct: 181 RWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFREI 231 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 19/241 (7%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK-QVPDVMILDVGLPDI 60 ++ + +V+D I + L +L+ EGF+V E G L + + P++++LD+ +P++ Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG+ELC Q+ LP+LFL+A+ + VD+++G EIGADDY+ KPF E+ AR+R LR Sbjct: 61 SGYELCSQIRRE-WDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLR 119 Query: 121 RVKK-------------FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLL 167 R ++ S+P V++ E+++ + + + L+ EF LL L Sbjct: 120 RYERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLA 179 Query: 168 KSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ G V++R+Q+ D VW TV HIK LR KL + I T G GY Sbjct: 180 ENAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLET---ERQFIKTQWGTGYVFI 235 Query: 228 G 228 G Sbjct: 236 G 236 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 1/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ ++D+ I L L+ G+ +E + ++ PD++ILD+ LPD G E Sbjct: 74 TLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLE 133 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 C QL +LHP LPV+ LTAR + D+++GLEIGADDYV KPF E+ AR++ LR Sbjct: 134 FCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANPG 193 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 T +++ G+ E++ + + LT EF LL L+++ + +R+++ +W Sbjct: 194 AGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRLW 253 Query: 185 EDA-QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D+ ++ R +D HI+ LR K+ I T G GY Sbjct: 254 RDSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRF 296 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +VEDE +A + L+ EGF V + G +D + ++ ILD+ LPD+ G Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+ + + PV+ LTA+ ++D+++ +GADDY+ KPFS E+ ARV+ +LRR Sbjct: 61 SEVLQYIRRKTSK-PVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRT 119 Query: 123 KKFS-------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + ++ G E+N ++ ++L EF LLK L + P RV + Sbjct: 120 EGTHHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 Q+ +SVW D TV HI LR K+ + + T RG+GY L Sbjct: 180 IAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +VED+ IA+ L+ F V++ G+ L++ ++ D++ILDV LP + G Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F++ R ++ +PVL ++A+ EE+D++ GL +GADDY+ KPFSP E+ ARV++ ++ Sbjct: 61 FDILR-IIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNY 119 Query: 123 KKFSTP------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 ++ + VI I E+N+ + Q+ D + L + EF LL + + P RV+ + Sbjct: 120 ERLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGK 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +L +S+W TV HI+ +R K+ I T G+GY +R Sbjct: 180 DELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIR 230 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E V +VEDE IA+ L L +EG+ V + +RG V+ + Q +++LD+ LP + Sbjct: 1 MSNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G +CR++ +P++ +TA+ EEVDR++G E+G DDY+ KPFSPREV ARV +LR Sbjct: 61 DGKTVCREVRKF-SDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLR 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R K S+ V+ +G +LN+ + L+LT EF + LL+SP RV++R QL+ Sbjct: 120 RTFKKSS-DDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLI 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + V D Y+RT+D HIK LR K+ P I + G GY + Sbjct: 179 EKVQGYNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKI 224 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +TV +VEDE I + ++EGF V G L + + D+ ILD+ +P + Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +CR + + P++ LTA+S+E D+LLG E+GADDY+ KPFSP+ + A+ + LLRR Sbjct: 61 GLAVCRNIREV-SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + ++ +N+ + ++ L L+ E+ LL L + G SR +++D Sbjct: 120 TGTLNDKN-ILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILD 178 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW RTVDT+IK LR KL + I T RG GY Sbjct: 179 NVWGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFE 221 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 3/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +++D++ + L L++ GF V L + PD++ILDV LPD G Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ A +P++ LTAR + DR++GLE+GADDY+ KPF PRE+ AR++ +LRR + Sbjct: 77 VCREVRA-DSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTR 135 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + +R+G E+N + L LT EF LL L ++ GRV SR +++D Sbjct: 136 DDAEA--LRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTR 193 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D YDR++D + LR KL + I T RG+GYS G Sbjct: 194 GIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIG 237 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 13/240 (5%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VEDE+ IAD + L +G+ V GL L Q + I+D+ +P + Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G L +L + PV+ L+A+SEEVD+++GL IGADDYV KPF P E+ ARV + LR Sbjct: 61 DGITLTMRLRENY-NFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLR 119 Query: 121 RV-----------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKS 169 R +K + V IG ELNE +++ + T EF +L L+++ Sbjct: 120 RYTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRN 179 Query: 170 PGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 GRV+S ++ + VW + D TV H++ +R K+ + + G+GY + + Sbjct: 180 AGRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKI 238 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 120/229 (52%), Gaps = 5/229 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 R V +V+DE+ I D + L+ EGF VE G L + PD+++LDV L DI Sbjct: 77 SRVRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDID 136 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF +C +L +P LFLTAR D++ GL +G DDYV KPFS E+ ARVR +LRR Sbjct: 137 GFAVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRR 196 Query: 122 VKKFSTPS---PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 T +R EL+ ++ + LT E+ LL+ LL + V +R Q Sbjct: 197 AGSPVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQ 256 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+D VW ++T+I LR K+ N + I+T RG+GY LR Sbjct: 257 LLDHVWGHDFSGEGGVLETYISYLRRKV--DNVEPPLIHTVRGVGYVLR 303 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 135/227 (59%), Gaps = 7/227 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 E + LV+DE+ I D + Y L++EG+ VE G LDK P +++LD+ LP I+ Sbjct: 1 MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+++C++L + ++ LTA+ + VD++LGLE+GADDY+ KPF RE+ AR+++L+RR Sbjct: 61 GYDVCKRL--EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRR 118 Query: 122 VKK---FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + K S VI IG +N+ +S ++ L T EF LL LL + G V+SR+Q Sbjct: 119 LDKTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQ 178 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 +++ +W RTVDTHI+ +R KL N I T G+GY Sbjct: 179 ILNIIWNMDYAGGTRTVDTHIQRIRKKLG--NNYQDLIQTVYGIGYK 223 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 121/227 (53%), Gaps = 3/227 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q V +V+DE I+D + L+ +GF VE + G L+ A PD ILDV +P + Sbjct: 28 QPVKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMD 87 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF L +L P LFLTA+ DR+ GL IGADDYV KPFS EV R+R +LRR Sbjct: 88 GFTLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 147 Query: 122 VKK-FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 V K S S +I L++ +++ + L+ EF LL+ L+ + V S+ +++ Sbjct: 148 VAKDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKIL 207 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D VW V++++ LR K+ + I+T RG+GY LR Sbjct: 208 DHVWNYDFGGDGNVVESYVSYLRRKI--DTKEPRLIHTVRGVGYVLR 252 >UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0H8_9GAMM Length = 241 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 120/237 (50%), Gaps = 11/237 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ E + +VED++ I + L V+ L K K +++LD+ LP + Sbjct: 1 MRHEKLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G LCR++ +P V+ LTA S ++DR++GLE+GADDY+ KPF RE+ ARV+T LR Sbjct: 61 DGLSLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLR 120 Query: 121 RV----------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 + +++G + + Q+ + + LT EF LL + P Sbjct: 121 HRAQLLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHP 180 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V+SRQQL+D VW Y+ TV++HI LRAKL I T G+GY L Sbjct: 181 NHVFSRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLELHQSTP-IIETVWGVGYKLN 236 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 TV +VED+ I L L G+ V G + +A + PD+++LDV LPD GF Sbjct: 11 HTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGF 70 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 L R+L A PVLFLTAR+ DR+ GL G DDYV KPF +EV RVR +LRR Sbjct: 71 RLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAG 130 Query: 124 KFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 ++ +PV +R L+E ++ +PL L+ EF LL L P RV + +++ Sbjct: 131 APASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEIL 190 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW R VDT++K LR KL + ++T RG+GY LR Sbjct: 191 QRVWRYDFSGDTRIVDTYVKNLRRKL-DHGGAPALLHTVRGVGYCLR 236 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DE I + Y L + G+ V G L+ AR++ P +++LD+ LP +SGF+ Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69 Query: 65 LCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + QL A + VL LTAR EE DR+ GL +GADDY+ KPFSP E+ RV +LRR Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129 Query: 123 KKFST-PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + + IG ++ A + + LT EF LL TL + GRV R L++ Sbjct: 130 GSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLLE 189 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +VWE A D RTVD H++ LR+KL A I T RG GY LR Sbjct: 190 TVWEAAPDIQTRTVDMHVQRLRSKLGAAG---ELIETVRGFGYRLRA 233 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 V ++EDE +A L Y L QEG+ V + G L A ++ D++ILD+ LP ++GF Sbjct: 3 HKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGF 62 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+ +L P++ LTAR+ E + + GL+ GADDY+ KPF E+ ARV +LRR + Sbjct: 63 EILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQ 122 Query: 124 K-----FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + T VI +G + ++ + L EF +L L++ PG V +R Sbjct: 123 QDDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDD 182 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 LM+ VW RTVD H+ +LR KL I + RG+GY L Sbjct: 183 LMNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKL 228 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 8/224 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +V+DE+ I + L L +EG+ V E G L ++ D++ILDV LP G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + + R++ + PV+ LTAR + D + G E+GADDY+ KPF+ + + ARV++LLR+ Sbjct: 66 WSILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKT 124 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 +I IG +N+ + +S + L E+ LL L+K+ SR++L++ Sbjct: 125 NNM--VESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNE 182 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW DRT+DTHIK LR K+ I T RG+GY L Sbjct: 183 VWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 5/227 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + L+ED+ + L Y L++EGF++ G ++ R+ PD+++LD+ LPD G Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 63 FELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 ++C+ + A+PV+FLTAR+ E DR++GLE+GA+DYV KPF RE+ AR++ R Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 +TP+ ++ G EL+ + Q+ PLALT EF LL+ L+ PG V+SR+QL+ Sbjct: 126 ---NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLL 182 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++VW + DR VD ++ LR K+ I++ RG GY+ Sbjct: 183 NAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFE 229 >UniRef50_UPI000038414E COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038414E Length = 229 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 91/226 (40%), Positives = 139/226 (61%), Gaps = 2/226 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q + +VEDE IAD LV L+ G++ G LD+ R+ PD+++LD+ LP + Sbjct: 3 QERKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMD 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +CR+L +PV+ +TAR EE+DRLLGLE+GADDY+ KPFSPREV AR+ +L RR Sbjct: 63 GTAVCRELRRF-STIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRR 121 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 ++ + P P E+++ +I L LT EF L++ L SPGR+++R Q++D Sbjct: 122 ME-WGNPVPASGPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILD 180 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + QD DR +D+H+K +R K+ ++ PD+ I++ G+GY Sbjct: 181 LAYHGDQDVSDRIIDSHVKNIRKKISSVWPDVDVIHSVYGIGYRYE 226 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + ++EDE +A + L EG+ V V G+ L A Q PD+++LD LP ISG E Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR+L + +PV+ +TAR E DR GL+ GADDYV KPFS +E+ +R+R LR + Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR--QP 127 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + + L+ +++ + + LT E+ LL+ L++ P +V +RQQ+++ VW Sbjct: 128 RRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVW 187 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ +I+ LR K+ + I T RG+GY LR Sbjct: 188 GCDFTGDSNIIEVYIRYLRLKIEG-PGEKRLIQTVRGVGYVLR 229 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 2/225 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +T+ +V+DEQG+ + L+ +G+ + E G L + VPD+++LD+ +P + G Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+CR++ + +PV+FL+ R +D++ E+GADDY+ KPF E+ AR++ +R Sbjct: 61 LEVCREIRSQLS-IPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMY 119 Query: 123 K-KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 S+ P +R GH ++ A + ++LT E LL K P +VW+ +QL D Sbjct: 120 AMNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYD 179 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +W Y TV HI LR K+ I T RG GY Sbjct: 180 RIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRF 224 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 122/235 (51%), Gaps = 10/235 (4%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR-KQVPDVMILDVGLPDI 60 + + +V+D++ IAD + L EG+ V + L + ++ + ILD+ +P + Sbjct: 23 AKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGM 82 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G + +++ +PV+ L+A+S ++D+++GL GADDYV KPF+P E+ ARV+ LR Sbjct: 83 DGLSMVKKIRET-SHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLR 141 Query: 121 RVKKFSTP--------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGR 172 R +F++ +I G +N+ ++ +D LT E+ +L L +PGR Sbjct: 142 RFTEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGR 201 Query: 173 VWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V+S + VW + + TV HI+ LR K+ + I T G+GY + Sbjct: 202 VFSTDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIE 256 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 3/225 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 E + +V+DE I + + +G+ V G ++ K D+++LD+ +P+I GF Sbjct: 3 EKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGF 61 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ++C+++ + P++FL+AR E+D++ GL +G DDY+ KPFS +E+ ARV+ LRR K Sbjct: 62 QVCQKIR-DKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREK 120 Query: 124 KFS-TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + I G L+ + ++ + + + T EF +++ L P +V+S++Q+ + Sbjct: 121 RIPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEK 180 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW + TV HIK +RAK N L+ I T G+GY Sbjct: 181 VWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 3/226 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 TV++VEDE I + L L++ G+ VE + G L K R+ PD +ILD+ LPD+ G E Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C+Q+ L +P++ L+A+S E DR+ G+ IGADDYV KPFSPREV R+ +LRR + Sbjct: 64 ICKQIR-LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRT 122 Query: 125 FSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + ++ ++ + ++LT EF ++ + K PGRV+SR L+ + Sbjct: 123 LNKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKI 182 Query: 184 WEDA-QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 ED+ + Y+R++D HIK LR KL I T GMGY G Sbjct: 183 QEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGG 228 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 3/224 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+D++ +A+ + +L+ +GF G L+ R PD+++LD+ LP Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CRQ+ +P++ LTA+S+ D + GLE GADDYV KPF P E+ ARVR LR Sbjct: 90 GIEVCRQIRGE-SDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR- 147 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 +RI ++ ++ ++LT EF LL L + P +V++R+ L++ Sbjct: 148 -PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLE 206 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 VW R V+ H++ LR+K+ + T RG+GY Sbjct: 207 QVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 120/223 (53%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 TV LVED+ IA L L EG+ V V E G L AR D++I+DV LP ++GF Sbjct: 17 RTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGF 76 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 EL R L LPV+ L+AR E+D+++GLE+GA+DY+ KPFS E+ ARV+ +LRR Sbjct: 77 ELLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDA 136 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 +R G +N ++ D + LT EF +L L ++ GRV SR+Q+ V Sbjct: 137 IARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKV 196 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W RT+D I LR KL + T RG+GY Sbjct: 197 WGPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRF 239 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 135/227 (59%), Gaps = 7/227 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + V +V+DE+ IA+ + + L++ G+ V+ + GL VL K K PD++ILD+ LP I G Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +LC+++ + +P++ +TA+S E + +LGLE+GADDYV KPFS RE+ ARVR++LRR K Sbjct: 70 DLCKKIKEKYS-MPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTK 128 Query: 124 KFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + I IG+ LN A + + + LT E+ +L + +PG ++R +L+ Sbjct: 129 EGEEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKLL 188 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D VW DR VD +IK LR KL + + T RG+GY Sbjct: 189 DRVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFN 232 >UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A7B4Z9_RUMGN Length = 236 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 5/232 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+R+ + +VED+ I+ LV +++ G+ V G L +++PD ++LD+ LP + Sbjct: 5 MERQKILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERELPDCVLLDLMLPGM 64 Query: 61 SGFELCRQLLA-LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 +G + Q+ +PVL L+A+ D++ L +GADDY+ KPF P EV ARV + Sbjct: 65 TGEAVLDQIRQKQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAM 124 Query: 120 RRV----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 RR + V R + L + ++ L LT +E+ +L L+++P +V+S Sbjct: 125 RRYTKEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDILYLLIQNPQKVYS 184 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R+ L + VW+ D TV+ H+ LR K++ + + S I T G+G+ L Sbjct: 185 REHLYEQVWKGGYYGEDNTVNVHVSNLRKKIQKADKEESYIKTVWGIGFKLE 236 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V LVEDE+ I+D +V L+++G+ VE+ E G A Q DV++LD+ LP G Sbjct: 18 KVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGLS 77 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + + L +PV+ +TAR E +RL GL +GADDY+ KPF E+ AR++ L RR Sbjct: 78 ILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSSG 137 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S ++++G +N ++ + LT EF LL+ L++SPGRV +R Q+++ VW Sbjct: 138 KSL--SMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVW 195 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D VD ++ LR K+ D+ I T RG GY +R Sbjct: 196 GYDFDPSTNVVDVCVQRLRKKV-DAGHDVHLIETVRGAGYRMR 237 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V LVEDEQ IAD + L+ + F V G A DV+ILD+ LP G + Sbjct: 2 NVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGLD 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R L P++ LTAR+E DR+ GL++GADDY+AKPF E+ AR++ LLRR Sbjct: 62 ILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG- 120 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 T V+ +G +L+ I+ + LT EF LL+ L++SP +V +R QL++ VW Sbjct: 121 -GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAK---LRAINPDLSPINTHRGMGYSL 226 D VD IK +R+K L + I + RG GY L Sbjct: 180 GYDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +V+DEQ + + + + L++ G+ V + G L+ AR + PD+++LD+ +P + G Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 63 FELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 + +CR L +P++ L+ARS+E+D++LGLE+GADDY+ KPFSPRE+ ARV LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 121 RVKKFS-----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R KK +I G +++ I L EF LL L PG+ +S Sbjct: 121 RDKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFS 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R L+ WE RTVD HI+ +R KL +N + I T RG+GY Sbjct: 181 RYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 4/230 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +++V+DE I + + L+ G+AV V G+ ++ K PD++ILD+ LPDI G Sbjct: 9 EKKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICG 68 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++C L +P++ LT +++E D L GL+IGADDY+ KPFSPR++ ARV+ LLRR Sbjct: 69 EDICEMLRKR-SKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRT 127 Query: 123 KKFSTPSPVI---RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + +N+ ++ + LT E+ +L T+++ PG++++R++L Sbjct: 128 EDELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREEL 187 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + YDRT+D+HIK LR K+ + I T RG+GY + Sbjct: 188 IIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKFGSV 237 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +++D+ I L L EG+ VEV G ++ A++ P+++ILD+ LP + G+E Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C++ P+L L+AR E ++ GL +GADDY+ KPF+ E+ ARV+ LLRR Sbjct: 64 ICQRFRK-DNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR-- 120 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 T + VI+ +++ A ++ L LT EF LL + P +V +R+Q++D VW Sbjct: 121 -ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ +I LR K+ I+T RG+GY L+ Sbjct: 180 GLDFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVLK 220 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 94/224 (41%), Positives = 142/224 (63%), Gaps = 4/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VEDEQ IA L+ LQ+ GF F G+ V++ + + PD+++LD+ LP +G E Sbjct: 7 HILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLE 66 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C+++ A +P+ +TA EE+DRLLGLE+GADDY+ KPFSPREV AR++ L RR+++ Sbjct: 67 VCKEIRAF-STVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQ 125 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 P P F+++E +IS+ + L LT E+ LLK L+ +PGRV+SR QL+D + Sbjct: 126 IGVPEPTRT--GFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCY 183 Query: 185 EDAQDTYDRTVDTHIKTLRAKLR-AINPDLSPINTHRGMGYSLR 227 + Q DR +D+HIK LR K+ A+ P I+ G+GY Sbjct: 184 QQEQLIIDRVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFE 227 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 89/231 (38%), Positives = 127/231 (54%), Gaps = 4/231 (1%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+R T+ + +DE+ IAD L L+Q GF V + G VL + P ++ILD+ LPD Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 I G E+C + A A+P+L LTA+ + DRL GL+IGADDYV KPF+P EV ARV+ +L Sbjct: 61 IPGEEVCMAVRAR-SAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAIL 119 Query: 120 RRVKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 RR + + G ++ + + LT E+ LL L + P RV+SR+ Sbjct: 120 RRTMLDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSRE 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +L++ V+ RT+D H+K LRAK+ I T GMGY G Sbjct: 180 ELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGG 230 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 127/232 (54%), Gaps = 9/232 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +VEDE IA+ + L G+ VE + + Q+P+++ILD LP S Sbjct: 1 MTHRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKS 60 Query: 62 GFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G + ++L ALP+L LTA+SEE D++LGL+ GADDYV KPFSP+E+ ARVR +L Sbjct: 61 GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQI-----SWFDTPLALTRYEFLLLKTLLKSPGRVW 174 RR P + +G +L+ + ++ + +AL EF LL+ + +P RV Sbjct: 121 RRQMPIEDTGP-LTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVH 179 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 SR L+D VW +RTVD HIK LRA L + D I T RG GY + Sbjct: 180 SRASLLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCD-RYIETVRGSGYRI 230 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 2/224 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 ET+ ++ED+ + L + EG+ V+ G L A P +++LD+ LP ++G+ Sbjct: 5 ETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGY 64 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+CR L +P++ LTA+ +E D +LGL++GADDYV KPFS +E+ ARV LRR + Sbjct: 65 EICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQR 124 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 K + V G + A + + L+ EF LL L+ + GR SR ++M +V Sbjct: 125 KQT--GTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTV 182 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 W R++D + LR K+ + + T R GY Sbjct: 183 WGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVEDE +A L +L++ +AV+V G D A D+ ILD+ LP +SG + Sbjct: 2 RILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGLD 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R + PVL LTA+ DR+ GL+ GADDY+ KPF +E+ ARVR L RR + Sbjct: 62 ILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTGQ 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 I G F L+ ++ PLALT EF LL+ +++P +V S++ ++D VW Sbjct: 122 I-AGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D V+ ++ LR K+ S I T RG+GY Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDE-PDLPSYITTVRGVGYMF 221 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK--QVPDVMILDVGLPDISG 62 + ++EDE+ + L L++EG+ V++ G + D++ILD+ LP I G Sbjct: 2 KILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKIDG 61 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 LC+ L A + P+L LTA+ + D++LGLE GADDY+ KPFS E+ AR+R LLRR Sbjct: 62 ISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRRP 121 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 K V+++ L+ + ++ D + LT EF +L+ L+++ R+ S++Q++ Sbjct: 122 KNLM--PTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISH 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW DT V+ HIK LR KL D + I T RGMGY ++ Sbjct: 180 VWGYESDTLSNVVEAHIKNLRKKLER-KRDENIIETIRGMGYRIK 223 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V ++ED++ IA + L + + VE+ LD D++ILD+GLP + G Sbjct: 2 KVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGLS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 C+ + +LP+L LTAR D+++GL+ GADDY+ KPF E+ ARVR LLRR K Sbjct: 62 FCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRR--K 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 +P++ G L+ A++++ L LT E+ +L+ LL+ R+ SR +MD W Sbjct: 120 PLPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + + TV H+++LR KL+A+ + I T G GY L Sbjct: 180 PLDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLN 222 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED+ +AD LV ML + + V++ G + + D+++LD+ LP + G Sbjct: 2 RILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC QL + + +P+L LTAR+ + D++ GL+ GADDY+ KP E+ AR+R LLRR + Sbjct: 62 LCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSSE 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + S V+ L+ +S+ PL LT E+ LL+ L+ + R +S +++D +W Sbjct: 122 AT--SSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 TV HIK LR KL+A I T G+GY L Sbjct: 180 TFDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLN 222 Score = 112 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 V +V+D+ + + +LQ G + PD+++LD+ +P ++G Sbjct: 495 NTRVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNG 554 Query: 63 FELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 ELC+ + LPVLF+TA+++ R + GADDY+ KPF+ E+ R+ L+ Sbjct: 555 IELCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLK 614 Query: 121 RVKKFSTPSP 130 R + +T + Sbjct: 615 RTQNLATRTD 624 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 132/228 (57%), Gaps = 7/228 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + V LVEDE +A + L+ GF V +F G + ++ P++MILD+ +P + G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +CR++ LP++ +TAR+EE+DR+LGL +GADDYV KPFSP+E+ ARV+ +LRR+ Sbjct: 61 LTICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + P + F +++ +I + L LT EF LL+ L+ G+V+SR QL+D Sbjct: 120 DRKAEPE---QNDLFRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLDH 176 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAI---NPDLSPINTHRGMGYSLR 227 + D+ D DR +D+HIK LR K+ + G+GY Sbjct: 177 INPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQV-PDVMILDVGLPDI 60 V ++EDE+G+ D L L+ G+ V E G LD + +++LD+ LPDI Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG+ L + + +PV+ +TAR EE D+LLG E+GADDYV KPFSPREV ARV+ +L Sbjct: 61 SGWSLLKTIRET-SKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILS 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R ++ + +++ + LT EF LLK LL + G+V SR++ + Sbjct: 120 RTYGSQDDGKT-EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCL 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + VW RTVDTHIK LR KL + I T G+GY L G Sbjct: 179 NEVWGYDFYGDLRTVDTHIKQLREKL---GEKRNLIKTVWGIGYKLEG 223 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + +VEDE+ ++ L Y L+ EGF V+ RG + ++++PD++ILD LP +SG Sbjct: 3 PKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGI 62 Query: 64 ELCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 ELCR+L LP++ LTAR EE +R+ GL GADDYV KPFS E+ ARV+ +LRR Sbjct: 63 ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 K S ++R G EL+ ++ + L EF LL+ L+ SPGRV+SR QL+D Sbjct: 123 A-KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 VW +RTVD H+ LR L + I T RG GYSL Sbjct: 182 GVWGHDIYVDERTVDVHVGRLRKALN-FSNMPDVIRTVRGAGYSLES 227 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 8/229 (3%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+ + + +VED++ + L L+ G++V FE GL +++ + + P+++ILD+ LPD Sbjct: 1 MENKVKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPD 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + G+E+ + L L P + +L LTA + D+L G E GADDY+ KPF E+ AR++ LL Sbjct: 61 MDGYEVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR K + S I+ G E+ E + + + L++ EF LL L K+ RV S++++ Sbjct: 121 RR--KNISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEI 178 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +D+VW D TV+ ++ +R KL I T RG+GY L G Sbjct: 179 LDAVWGIDYYGSDNTVEVYVNYIRKKL-----SPELIKTIRGVGYKLVG 222 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 2/225 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LV+D+Q + L L+ + V++ G + ++ILD+ LP ++G Sbjct: 2 KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCR+L + + +PVL LTAR D++LGL+ GADDY+ KP E+ AR+R LLRR Sbjct: 62 LCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA-- 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + PVI G LN +IS+ + L LT E+ L++ ++SP RV+S +++ +W Sbjct: 120 TISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + D TV HIK+LR KL+ D I G+GY ++ L Sbjct: 180 SIEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIKSL 224 Score = 94.5 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ + D+ I + L +L G V+ PD++I+DV +P +G + Sbjct: 487 TIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546 Query: 65 LCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 LC+ + LP+L LT ++ R GADD+++KP E+ AR+ + L R Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606 Query: 123 K 123 + Sbjct: 607 R 607 Score = 42.1 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD--IS 61 +++ +V+ + + + ++ G + + P +++L++ P Sbjct: 362 QSLLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEED 421 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKP 105 G L + HP +PV+ + RS +DRL +G+ ++ KP Sbjct: 422 GLMLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKP 465 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +++D++ I+ + L EG+ V V G L+ + PD++ILD+ +PD+ G E Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C++L +P+L +T DR+ GLE GADDY+ KPF+ E+ ARV+ LLRR+ Sbjct: 64 VCKRLRK-DAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + ++ Q + + EF LL +K P +V +R+ LMD VW Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ ++ LR+KL A N + I+T RG GY LR Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQN-EPRLIHTVRGAGYVLR 224 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 119/231 (51%), Gaps = 9/231 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VEDE IA+ L LQ G L R +PDV+++D LP +SG Sbjct: 6 NILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVA 65 Query: 65 LCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 L R L A A+P++ LTARSEE D++ GL+ GADDY+ KPFSP+E+ AR+R +LRR Sbjct: 66 LARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRR 125 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFD-----TPLALTRYEFLLLKTLLKSPGRVWSRQ 177 T V +IG ++ + + + + L EF LL L+ P RV SR Sbjct: 126 APQLTAEQV-QIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRG 184 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L+D VW D +RTVD HIK LR L + + T RG GY Sbjct: 185 ALLDKVWGDHVFIEERTVDVHIKRLREALSPVQC-AEMVETVRGAGYRFTA 234 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 128/231 (55%), Gaps = 11/231 (4%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 T+ +VEDE+ + L L +EGF + G + D+ ++DV +P + G Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F+ ++L LPV+FLTARS+E DR+ GL +G DDY++KPFS E+ AR++ +LRR Sbjct: 61 FDFVKKLRET-STLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRT 119 Query: 123 KKFS-------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + + ++ + +LN A + P++LT EF LL L + G+V++ Sbjct: 120 YQRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R+ L+ SVW + +RTVDTHIKTLR KL+ + I T G+GY L Sbjct: 180 REHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYG---NVIQTVWGIGYKL 227 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 121/230 (52%), Gaps = 6/230 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGF-AVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 + E + LV+DEQGI D LV L++E F + G L + D+++LDV LPDI Sbjct: 15 RTEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDI 74 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFELCRQ+ + P+LF+TARS ++D+L GL IG DDY+ KPF+P EV AR+ LR Sbjct: 75 DGFELCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLR 133 Query: 121 RVKKFSTPSP----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 R P+ + F L I+ + P+ T E LL L P R+++ Sbjct: 134 RQHMTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTA 193 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +QL + VW D+TV HI LR K+ + I RG+GY Sbjct: 194 EQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKF 243 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 7 WLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELC 66 LVED+ I++ + + L +EGF + G + ++ D+++LD+ LP ++G + Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 67 RQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFS 126 + + +PVL ++A+ +VD+ LGL GADDY+AKPFS E+ ARV+ +RR ++S Sbjct: 61 KIIREK-SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119 Query: 127 TPSP----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 P VIRI ++ + PL LT E+ LL +P +V++++Q+ S Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW + ++ H++ LR K+ I T G+GY L Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 134/231 (58%), Gaps = 17/231 (7%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 +VEDE IAD + L+ EG+ VE G ++ + PDV++LDV LP G E+CR Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 68 QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK--- 124 ++ A P +PVL LTAR +E D+L+GL +GADDY+ KPFS RE+ ARV L+RRV++ Sbjct: 82 RVQAARP-VPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140 Query: 125 ----FSTPSPVIRI----GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 + + +R G E++ ++ T + LT EF LL L +SP V +R Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++L++ VW+ A + RTVD+H+K LR KL A + T G+GY+ Sbjct: 201 EKLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFE 246 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +T+ +++D++ + DT+V ML+QEGF G +KA PD++++D+ LP +SG Sbjct: 12 MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSG 71 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+C+QL A A P++ L+A +E+D++L LEIGADDYV KPF RE+ AR+R +LRR Sbjct: 72 TEICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRA 131 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + V+ E++ + L LT E+ LL L +P R +R +++S Sbjct: 132 S--TDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNS 189 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW RTVD H+ LR KL T G+GY Sbjct: 190 VWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRF 233 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 9/236 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M R + +V+DE+ I + + L + GF + GL ++ Q PD+++LD+ LPDI Sbjct: 1 MNRTKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDI 60 Query: 61 SGFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G E+CR++ P++ LTA+SEE D+++GL +GADDY+ KPF RE+ ARVRT+ Sbjct: 61 DGLEVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTV 120 Query: 119 LRR-------VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPG 171 LRR + +T + +I++ ++ + D + T EF +LK L +S Sbjct: 121 LRRVMDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLE 180 Query: 172 RVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V SR L++ V + R VD HI+ +R KL N I T RG+GY ++ Sbjct: 181 HVLSRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKMK 236 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 122/233 (52%), Gaps = 12/233 (5%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VED I + + LQ+E F+V + RK VP ++ILD+ L D +G +L Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70 Query: 66 CRQLLALHPA--------LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 CR + +P+L L+AR++E DRL G GADDY+ KPFSP E+ R+++ Sbjct: 71 CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 +LRR S I IG +++ ++ P+ LT EF LL L PGRV+SR+ Sbjct: 131 ILRRSIGLSIA--CIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSRE 188 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDL--SPINTHRGMGYSLRG 228 +L++ VW + RTVD H+ LR KL + I+T G GY L Sbjct: 189 ELLERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLES 241 >UniRef50_B4U9Z2 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9Z2_HYDS0 Length = 229 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 136/228 (59%), Gaps = 6/228 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ V++VED+ +A+ L + L+ EGF V+ F G + +P+++ILD+ LP Sbjct: 1 MDKDVVYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLPGY 60 Query: 61 SGFELCRQLLAL--HPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G + + L + +P++FLTA+SEE D++ G GADDY+ KPFS +E+ AR+R + Sbjct: 61 DGVRIAKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 L R KK T + +++ + EL+E +++ P+ LT+ EF +LK LL++ ++ +R + Sbjct: 121 LNRYKKTITTNK-LKVENLELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDK 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +++ +W D DRTVD HIK LR KL I T RG+GY Sbjct: 180 IINMLWSYGTDINDRTVDVHIKHLRDKLGDFG---KYIRTIRGVGYKF 224 >UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostridium RepID=A7GA24_CLOBL Length = 225 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 133/226 (58%), Gaps = 2/226 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +ET+ +++DE I + + L+ EG+ V G+ L K + PD++ILD+ LPDIS Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +C ++ +P++ LTA+S E L G IG+DDY+ KPFSP+++ A+V +L+R Sbjct: 61 GENVCERIRKE-SEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 VK + +I ++ ++ + + + LT E+ +L L ++P +++SR++LMD Sbjct: 120 VKGNQCEN-LIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMD 178 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + D YDR +DTHIK +RAKL + + + I T RGMGY Sbjct: 179 YISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFN 224 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 131/232 (56%), Gaps = 10/232 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + ++EDE+ IAD L Y L +EGF + G L + PD+++LD LPD Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG ++C+Q+ A + +P+L LTARS+ D++LGLE+GADDY+ KPF REV R+RT+LR Sbjct: 61 SGLDICKQVTAQY-NIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILR 119 Query: 121 RVKKFSTP-----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R+ + P VI ++ ++ + LT EF LL LL GR+++ Sbjct: 120 RLAQAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R +L++SVW RTVDTHI+ LR KL A I T G+GY Sbjct: 180 RAELLESVWGYDFPGDMRTVDTHIQRLRKKLDAA----DLITTVFGIGYKFE 227 >UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bacteria RepID=Q4K4R2_PSEF5 Length = 229 Score = 289 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 110/223 (49%), Positives = 149/223 (66%), Gaps = 3/223 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +VEDE IADTL++ LQ EGF G L+ + D++ILD+GLPDIS Sbjct: 3 AMPHILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPDIS 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE C+QL +PV+FL+AR E+DR++GLEIGADDYV KPFSPREV ARV+ +L+R Sbjct: 63 GFETCKQLRRF-SEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKR 121 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + P V + F ++ QIS+ PL+LTR+EF LL+ LL+ P RV+SR+QL+D Sbjct: 122 MVPRVAPEAVAAL--FVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLD 179 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 ++ A Y+R +D+HIK+LRAKLR + PI THRG+GY Sbjct: 180 ALGVMADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGY 222 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + T+ + +DEQ + D L ++ EG+ G +LD ++ D+++LDV +P++ Sbjct: 4 NQYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMD 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E R+L +PV+ +TA+S+E DR+ GL GADDY+ KPFSP+E+ AR+ +RR Sbjct: 64 GMEALRELR-TSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRR 122 Query: 122 VKKFSTPS--PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 ++ ++ ++N + ++ ++LTR EF LL +K P +V++R+QL Sbjct: 123 NYGYNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQL 182 Query: 180 MDSVWEDAQ-DTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +D VW RTVDTH+KT+R K+ + T G+GY L Sbjct: 183 LDHVWGVNYTTGGHRTVDTHMKTMRFKMGSGG---DYFRTVYGVGYVLE 228 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 6/222 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + VED++ I + ++Y L EG+ F D++ILD+ LP SG E+ Sbjct: 18 ICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEI 77 Query: 66 CRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +++ +PV+ LTA++ E D+++GL+ GADDY+ KPFS E+ ARVR LLRR Sbjct: 78 LKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSS 137 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 T S +I + EL+ +S + LT EF LL LL + G+V +R+ +M + Sbjct: 138 LSKTKSKII-YKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKI 196 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 W + RTVD HI TLR KL+ + I T R +GY Sbjct: 197 WGFDFEGESRTVDVHIATLRQKLKNASS---IIKTIRNLGYK 235 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 2/225 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED+ A TL +L + +AVEV G D + D+++LDV LP + G Sbjct: 2 KILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCR++ + + +P+L +T R+ ++ +GL+ GADDY+ KPF E+ AR+R LLRR Sbjct: 62 LCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRR--P 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 T PV+ G L+ + + + L LT EF LL+ L++ RV+S +++ +W Sbjct: 120 AVTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + V THIK LR KL+A+ + T G+GY L+ L Sbjct: 180 SYEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKPL 224 Score = 103 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+D+ I L +L G E L + PD++ILDV LP I+G E Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 65 LCRQLLALH--PALPVLFLTARSEEV--DRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 LCR + LP+LFLT S+ +++ IGADD+V+KP E+ R+ L Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQV--FSIGADDFVSKPIVGPELVTRIVNRLE 514 Query: 121 RVK 123 R+K Sbjct: 515 RMK 517 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 2/225 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V LV+D+ +A L L + V+ G A D+++LD LP +SG Sbjct: 2 RVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGVH 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC++L +P+L LT ++E+ +++ GLE GADDYV KPF E+ AR+R LLRR Sbjct: 62 LCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTPH 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + P V+ G+ +L+ + Q+ + + LT E+ LL+ L+SP +V+S L+ +W Sbjct: 122 ETEP--VLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + + TV +H++ LR KL I T G+GY L+ L Sbjct: 180 SSQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLKSL 224 Score = 92.5 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 10/127 (7%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+D+ +V +L F + + +PD+++ DV +P I+GFE Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 65 LCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKP-----FSPREVCARVR- 116 L R L + LP++FL+ + + IGADDY+ KP F+ R + R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 117 -TLLRRV 122 +RR Sbjct: 629 TADIRRP 635 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 118/228 (51%), Gaps = 4/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +E V ++ED++ I + L++ + V + G ++ + P +++LD+ LP + Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+E+C+++ L A P++FL+ + + D++ GL+ GADDY+ KPF E+ AR++ LRR Sbjct: 61 GYEICQKIRMLSEA-PIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRR 119 Query: 122 VK---KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 K + P V G+ E++ + + ++L E LL L+++ V+S ++ Sbjct: 120 SKMNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEK 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + D +W +TV HI LR K+ I T RG GY Sbjct: 180 IYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 288 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 6/232 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ + + LVED++ I+ + L++EGF V G+ + K D+++LD+ LP + Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G+++C+++ P++ LTA+ + +++ GL IGADDYV KPF E+ AR+ +LR Sbjct: 61 DGYQVCQKIRETSY-TPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLR 119 Query: 121 RVKK-----FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R+++ + + + A I + + + R E LLK L+ P +V+ Sbjct: 120 RIEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFK 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R++L++ +W + DR +D +IK LR +L++ I T G+GY Sbjct: 180 REELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFE 231 >UniRef50_A9BP07 Two component transcriptional regulator, winged helix family n=14 Tax=cellular organisms RepID=A9BP07_DELAS Length = 239 Score = 288 bits (740), Expect = 8e-77, Method: Composition-based stats. Identities = 109/228 (47%), Positives = 145/228 (63%), Gaps = 3/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 V LVED+ IA T+ Y L+++G AV + + + Q PD ++LDVGLPD + Sbjct: 8 NAPRVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGN 67 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G + CR+L A+P+L L+AR EE+DR+LGLE+GADDY+ KPFSPRE+ AR R LLRR Sbjct: 68 GLDWCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRR 127 Query: 122 VKKFSTPSPVIRIGH---FELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 V++ F ++ ++ PL LTR E+ LL+ LL+ PGR+ SR+ Sbjct: 128 VQRLQPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREF 187 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+DS+W D+ DRTVDTH+KTLRAKLRA P I THRGMGYSL Sbjct: 188 LLDSIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 1/227 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +VEDE + L+ L+ +A + G VL R+ PD+++LD+ LP Sbjct: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G LCR++ +P++ +TA+ EE+DRLLGLEIGADDY+ KP+SPREV ARV+T+LRR Sbjct: 69 GLTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 K ++E Q SW L LT EF LLKTL PG+V+SR+QL++ Sbjct: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +++D + DRT+D+HIK LR KL +++ + S I G+GY Sbjct: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED++ +A L +L E + V+V G D++ILDV LP++ G + Sbjct: 2 RILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGIK 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 C+QL A LPVLF+TA + +++ GL GADDY+ KPF E+ ARVR LLRR K Sbjct: 62 FCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRR-GK 120 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S + L + ++++ + L+LT E +L+ L++P + +SR+ ++D++W Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + + TV +H+K LR KLR + I T G+GY L+ + Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLKPI 225 Score = 79.8 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + V+D+ + TL L E + + ++ L + + PD+++LD+ +P +G Sbjct: 539 RKILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGI 598 Query: 64 ELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 ELC+ + LP++F TA +E + + G D+ + K S ++ A + ++R Sbjct: 599 ELCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKR 658 Query: 122 VK 123 Sbjct: 659 SY 660 >UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 Tax=Bacteria RepID=Q3DDJ6_STRAG Length = 225 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 ++ VED+ I + ++Y LQ GF + F + +++VPD+++LD+ LP G + Sbjct: 2 IYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLTI 61 Query: 66 CRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +L H +PV+ TA+ E D++ GL++GADDY+ KPF E+ +R++ +LRR + Sbjct: 62 LERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRSR 121 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + + + +I IG+ E++ + + LT EF LL ++P RV++RQ+L+D V Sbjct: 122 QVDSKAHII-IGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKV 180 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 W + RTVD HI TLR KL I T RG+GY L Sbjct: 181 WGEQFLGETRTVDVHIGTLRTKLGEDGY---LIATVRGVGYRLE 221 >UniRef50_A7K1J9 DNA-binding response regulator n=13 Tax=Vibrionaceae RepID=A7K1J9_VIBSE Length = 243 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 119/230 (51%), Gaps = 7/230 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED+ +A+ + L+ +G V + ++Q D++ILD GLPD G + Sbjct: 11 NILLVEDDDDLAELVQMHLKFQGHQVSRATNVADAKAQYQQQPFDLLILDRGLPDGDGLD 70 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C L PVL LTAR E+D++ GLE G DDY+ KPFS E ARVR +LRRV + Sbjct: 71 ICHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSQ 130 Query: 125 FSTP-------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + + G + Q+S D + LT EF LL+ L PGRV+S+ Sbjct: 131 TAEAKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKD 190 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +L+D VW + Y TV + I LR+KL + D I T G+GY + Sbjct: 191 ELLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKFQ 240 >UniRef50_UPI0001C31E43 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31E43 Length = 251 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 3/227 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLP-DISGF 63 T+ +V+DE + + L +EG V+ G +++A + DV++LDV L +G+ Sbjct: 24 TILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVALGSGPNGY 83 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV- 122 E+CR L A +P++ LTA E D +LGLE GADDYV KPF E+ +R+R +LRR Sbjct: 84 EVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAG 143 Query: 123 -KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + ++ +G L+ ++ P+ +T EF LL+ L+ PGR+ +RQ+L+ Sbjct: 144 PRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLR 203 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 ++W D+ R +D H++ LR KL I T RG GY L+ Sbjct: 204 AIWGDSAYRDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRLQA 250 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + ++EDE ++ L Y L EG+ V V + G + A +Q D+++LD+ LP ++ Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE+ +L + PV+ LTA++ E + + GL+ GADDY+ KPF E+ ARV +LRR Sbjct: 61 GFEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRR 120 Query: 122 V-------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 K + I +G + +++ P+ L EF +L L + PG V Sbjct: 121 STGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVM 180 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +R LM++VW RTVD H+ +LR KL + I++ RG+GY L Sbjct: 181 TRDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSV-HIDSIRGVGYKL 231 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + +V+D+ I + + L++EGF GL L K + D++ILD+ +P++ GF Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ++C +L + +P+L LTA+ E ++ G +G DDY+ KPF P E+ RV+ LL+R + Sbjct: 92 DVCFELRK-YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ 150 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 T S I++G LN +++ + + L EF LL TL GR SR+QL++ V Sbjct: 151 --ITVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDV 208 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 W + +RT+D HI LR K + S I T RG+GY L Sbjct: 209 WGYDFEGNERTLDVHINRLREKFQEEKSKFS-IKTIRGLGYRLE 251 >UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicutes RepID=A0RL52_BACAH Length = 241 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DE I + + L+ EG+ V G L++ + PDV+ILDV LPD G+E Sbjct: 20 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 78 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 L R +PVL LTA+S+ D+LLGL++GADDYV KPF+ E+ RV+ + RRVKK Sbjct: 79 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVKK 138 Query: 125 FS--TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 VI G + ++ + LT EF L + + +P RV+ R +L++ Sbjct: 139 TEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEK 198 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW R VD ++ LR KL I T G+GY L Sbjct: 199 VWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 239 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 125/218 (57%), Gaps = 3/218 (1%) Query: 10 EDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCRQL 69 ED++ +A + +L + +++ G+ A D++++D LP + G +LC+QL Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 70 LALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFSTPS 129 + P++ LTAR DR+ GL+ GADDY+ KPF E+ AR+R LLRR + S Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGI--VS 119 Query: 130 PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDAQD 189 PV++ G +L+ +++++ D P+ALT E+ LL+ L++P R++S L+D VW Sbjct: 120 PVLQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDT 179 Query: 190 TYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +V THIK LR KLR + I+T G+GY LR Sbjct: 180 PTVASVRTHIKGLRQKLRQVGLS-DVISTVYGLGYRLR 216 Score = 109 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ +V+D+ + L +LQ GF +E+ K PD+++LD+ +P +SGF+ Sbjct: 570 TLLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFD 629 Query: 65 LCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 LC+ + + LP+LF++A ++E +GADDY+ KP E+ ARV L R Sbjct: 630 LCQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARS 689 Query: 123 KKFSTPSPV 131 + + + Sbjct: 690 RDRRLRTEI 698 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 132/228 (57%), Gaps = 7/228 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VEDE+ IA L L + G+ + G V+ + Q D+++LD+ LP G Sbjct: 3 HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLT 62 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ + ++ +TAR +E+DRLLGLE+GADDY+ KPFSPREV ARV+T+LRR+ Sbjct: 63 ICREIQEF-SNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINP 121 Query: 125 FSTPSPVIRIGH------FELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 T I ELN Q + P+ LT EF LL L +PGR++SR Q Sbjct: 122 PLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRSQ 181 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D V++D + +RT+D+HIK LR KL AI D + + +GY L Sbjct: 182 LIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKL 229 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 93/224 (41%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DE+GI L L+ G+ V G L + PD+++LDV LPD+ GFE Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV-- 122 +CR L A+PVLFLT DR+ GL++G DD+V KPF +EV ARVR LLRR Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + +R G +L+ A Q+ D P+ LT EF LL+ L+++PGRV SR Q+ + Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW + VDT+I LR KL P S I T RG+GY L Sbjct: 208 VWNHRDEGSG-VVDTYIYYLRRKLGE--PGQSLIRTVRGVGYQL 248 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M + +++VEDE+ IA L L+ EGF E+ E G ++ + D+++LDV LP Sbjct: 1 MDKPVRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPG 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + G +C+++ + LP++ LTA+ E D++ GL+IGADDY+ KPF+ E+ AR+R L Sbjct: 61 MDGMTICKRVREVSS-LPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNAL 119 Query: 120 RRVKKFSTP---SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 R+ + +++ + + ++ + LT+ E+ LL+ ++++ V +R Sbjct: 120 RKHVPDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTR 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 Q+++ VW VD +I+ LRAKL I T RG+GY+++ Sbjct: 180 DQILEKVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGYAVK 229 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 116/238 (48%), Gaps = 10/238 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQ+ + +VEDE+ I L + E + VE G + K P +++LDV LP Sbjct: 1 MQQHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKK 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SGFE+CR + HP ++ LTA++EE ++ GL++GADDYV KPFS E+ ARV+ LR Sbjct: 61 SGFEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLR 120 Query: 121 RVKKFSTPSPV--------IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGR 172 R+ + +P I L+ + PL L+ EF +LK + G Sbjct: 121 RIDLQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGE 180 Query: 173 VWSRQQLMDSVWED--AQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 V R+ L+ +W RT+D HI LR KL + I + RG GY Sbjct: 181 VVLREDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPD--VMILDVGLPDISG 62 + +V+D++ I L + EG+ G + K +PD ++ILD+ +P+++G Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNT-MPDISLVILDLMMPEMNG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++ RQ+ ++P+L L+A++ ++D++ GL GADDYV KPF+P EV ARV++LLRR Sbjct: 61 MDVIRQVRK-DSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 123 KKF--STPSPVIRIGHFELNEPAAQI-SWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + V+ +G +N+ + ++ + P+ LT EF +L L P RV+S + Sbjct: 120 ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + VW+ +TV H+ LR K+ A I T G+GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +VEDE+ + D +V +++ G + G+ L + D+MILDV +P + GF Sbjct: 22 NVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFS 81 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C+ + +P++ LTA+ E D+L G E GADDY+ KPFSP+ + A+ LLRR Sbjct: 82 VCKLAREM-SNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSP 140 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 P + +G + + ++ + LT E+ LL L+ +PG++++R QL++ +W Sbjct: 141 --APLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIW 198 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + RTVDTHIKTLR KL I T GY Sbjct: 199 GYDFEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKFE 238 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+D++ + ++L L G+ VE+ G+ L+ PD ++LDV +P + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK- 123 +CRQL + LP+L LTAR +R+ GL+ GADDY+ KPF+ E+ AR+R LLRR K Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 124 --KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + S + L+ +++ ++LTR EF LL+ L+ +P RV +R ++++ Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW T ++ ++ LR K A + I+T RG+GY LR Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRKTEAEG-EPRLIHTVRGVGYVLR 228 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 129/230 (56%), Gaps = 13/230 (5%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V ++EDE I + L EG+ V G + + PDV++LDV LP G E Sbjct: 16 RVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGLE 75 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ A P +PVL LTAR +E D L+GL +GADDY+ KPFS RE+ AR++ LLRRV++ Sbjct: 76 VCRRIQADEP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRR 134 Query: 125 FSTPSP-------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + P P ++IG ++ ++ P LT EF LL L +PG V +R+ Sbjct: 135 AAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTRE 194 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL+ VW+ T RTVD+H+K LR KL + + T G+GY+L Sbjct: 195 QLLADVWDWVDATGTRTVDSHVKALRRKLGSD-----LVRTVHGVGYALE 239 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 355 5e-97 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 352 5e-96 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 352 8e-96 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 350 2e-95 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 350 2e-95 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 350 2e-95 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 349 4e-95 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 349 7e-95 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 348 7e-95 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 348 9e-95 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 348 1e-94 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 345 6e-94 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 345 8e-94 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 344 2e-93 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 343 2e-93 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 343 3e-93 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 343 3e-93 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 342 5e-93 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 342 6e-93 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 342 6e-93 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 342 7e-93 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 342 8e-93 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 340 1e-92 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 340 2e-92 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 340 2e-92 UniRef50_B8G179 Two component transcriptional regulator, winged ... 340 3e-92 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 339 4e-92 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 339 6e-92 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 338 8e-92 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 337 1e-91 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 337 1e-91 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 337 2e-91 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 337 2e-91 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 337 3e-91 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 336 3e-91 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 336 3e-91 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 336 4e-91 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 336 4e-91 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 335 5e-91 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 334 1e-90 UniRef50_C4L340 Two component transcriptional regulator, winged ... 333 4e-90 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 332 4e-90 UniRef50_B8G223 Two component transcriptional regulator, winged ... 332 7e-90 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 332 8e-90 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 331 9e-90 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 330 2e-89 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 329 4e-89 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 329 5e-89 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 328 6e-89 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 328 6e-89 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 328 7e-89 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 328 8e-89 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 327 1e-88 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 326 3e-88 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 326 3e-88 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 325 9e-88 UniRef50_D1C683 Two component transcriptional regulator, winged ... 325 9e-88 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 325 1e-87 UniRef50_A4J267 Two component transcriptional regulator, winged ... 325 1e-87 UniRef50_B8I272 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 324 1e-87 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 324 1e-87 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 324 2e-87 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_C4L703 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 323 3e-87 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 323 3e-87 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 322 4e-87 UniRef50_B8I014 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_A4AL32 Putative two-component system response regulator... 322 5e-87 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 322 5e-87 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 322 5e-87 UniRef50_D1C280 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 322 8e-87 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 321 1e-86 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 321 1e-86 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 321 1e-86 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 321 1e-86 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 320 2e-86 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 320 2e-86 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 320 2e-86 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 319 4e-86 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 319 4e-86 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 319 4e-86 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 319 4e-86 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 319 5e-86 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 318 6e-86 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 318 6e-86 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 318 7e-86 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 318 7e-86 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 318 9e-86 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 318 1e-85 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 318 1e-85 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 318 1e-85 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 317 2e-85 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 317 3e-85 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 317 3e-85 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 317 3e-85 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 316 3e-85 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 316 4e-85 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 316 5e-85 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 315 5e-85 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 315 5e-85 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 315 7e-85 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 315 7e-85 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 315 7e-85 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 315 7e-85 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 315 8e-85 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 315 8e-85 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 315 8e-85 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 315 8e-85 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 315 9e-85 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 315 1e-84 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 315 1e-84 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 314 1e-84 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 314 1e-84 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 314 2e-84 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 314 2e-84 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 313 2e-84 UniRef50_B8G869 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 313 3e-84 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 313 3e-84 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 313 4e-84 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_C0WE14 Two-component system transcriptional regulator n... 312 4e-84 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 312 5e-84 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 312 5e-84 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 312 6e-84 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 312 9e-84 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 311 9e-84 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 311 1e-83 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 311 1e-83 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 311 1e-83 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 311 1e-83 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 311 1e-83 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 311 1e-83 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 310 2e-83 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 310 2e-83 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 310 2e-83 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 310 3e-83 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 310 3e-83 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 310 3e-83 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 310 3e-83 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 309 4e-83 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 309 4e-83 UniRef50_P08368 Transcriptional regulatory protein creB n=64 Tax... 309 4e-83 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 309 5e-83 UniRef50_C4RGF6 Two-component system response regulator receiver... 309 5e-83 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 309 5e-83 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 308 6e-83 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 308 6e-83 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 308 7e-83 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 308 8e-83 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 308 9e-83 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 308 1e-82 UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromon... 308 1e-82 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 308 1e-82 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 308 1e-82 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 307 1e-82 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 307 2e-82 UniRef50_UPI0001B559F0 two-component system, response regulator ... 307 2e-82 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 307 2e-82 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 307 2e-82 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 307 2e-82 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 307 2e-82 UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synecho... 307 2e-82 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 307 3e-82 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 306 4e-82 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 306 4e-82 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 306 4e-82 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 305 6e-82 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 305 6e-82 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 305 7e-82 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 305 7e-82 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 305 9e-82 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 305 9e-82 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 305 9e-82 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 304 1e-81 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 304 1e-81 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q3A190 Two component signal transduction response regul... 304 1e-81 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 304 1e-81 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 304 2e-81 Sequences not found previously or not previously below threshold: UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 304 1e-81 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 355 bits (914), Expect = 5e-97, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 128/230 (55%), Gaps = 4/230 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VED+ + + L Y L +EG+ +E E GL L R P ++ILDV LP I Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFELCR + ++P+L LTARS E D++ GLE GADDY++KPF RE+ AR++ LLR Sbjct: 87 DGFELCRLIR-TESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLR 145 Query: 121 RVKKFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 R + ++ + ++IG E+ + L + EF L ++++ RV+SR+ Sbjct: 146 RSQTQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSRE 205 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL++ VW + RTVD HI LR K+ A + T RG GY Sbjct: 206 QLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 352 bits (905), Expect = 5e-96, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + +V+D+ I + + Y L +EG+ V L + D+ I+D+ LP + Sbjct: 25 MAKKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGM 84 Query: 61 SGFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 GFEL RQL + PV+FL+A+ EE D++LGLE+GADDY+ KPFS RE+ AR++ + Sbjct: 85 DGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAV 144 Query: 119 LRR----VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 RR ++ I E++ ++ D ++LT EF LL+ L ++ G+V+ Sbjct: 145 FRRIQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVF 204 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 SR L+D +W RTVD HI+ LR K+ + I T RG GY R Sbjct: 205 SRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFR 257 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 352 bits (904), Expect = 8e-96, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ V + +DE+ I D L L++E + V+ G L +++ILD+ +P I Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+CR+L + +P+L LTA+ +EVD+++GL IGADDY+ KPFS EV AR++ L+R Sbjct: 61 DGIEVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMR 119 Query: 121 R-----VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + ++ ++ ++ D ++LT E LLK +P +V++ Sbjct: 120 RFLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + QL +VW+ D TV HI+ LR K+ A + I T G+GY G Sbjct: 180 KTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVG 232 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 350 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 5/230 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ + L+ED Q I + L+ + V G L Q D++ILD+ LP + Sbjct: 1 MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G ++C+ L A + P+L LTA+ E DR++GLE GADDY+ KPFS RE+ ARV+ LRR Sbjct: 61 GLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRR 120 Query: 122 V-----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 + + G +++ +++ D + LT EF LL + PG+V+SR Sbjct: 121 TDMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++L+D+VW Y+ TV++HI LR KL + + T G+GY Sbjct: 181 EKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 350 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 136/229 (59%), Gaps = 2/229 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + V +V+D++ + + + L+ EGF+V++ G + K + +ILD+ LP++ Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 61 SGFELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G+E+C ++ + +P++ LTA+ EE D+++GL++GADDYV KPFSPRE+ ARVR L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 +RR + F ++ G ++ + ++ D + L EF LL L+K+P RV++R++ Sbjct: 121 IRRDQDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREE 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++ +W + RTVD H+K +R KL + S I T G+GY Sbjct: 181 ILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFE 229 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 350 bits (900), Expect = 2e-95, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + LVEDE+ I D + L++E + V G L++ K D++ILD+ LP + Sbjct: 7 ETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVP 66 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +CR + + +P++ LTA+ E DR++GLE+GADDY+ KPFSPRE+ ARVR LLRR Sbjct: 67 GERVCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR 125 Query: 122 VKKFSTPS-PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 V S P V+ G ++ ++ + LT EF LL TL + PGRV+SR +L+ Sbjct: 126 VHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELV 185 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + V + Y+RT+D+H+K LRAK+ + ++T G+GY Sbjct: 186 EKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 349 bits (897), Expect = 4e-95, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 133/234 (56%), Gaps = 6/234 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + T+ +V+DE+ I D + L+ EG+ V E G+ L+ K+ D++ILD+ +P++ Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E C ++ +P++ L+A++E++D++ GL GADDY+ KPF+P E+ ARV++ LR Sbjct: 61 DGIEACTKIREEK-NMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLR 119 Query: 121 RVKKFSTP-----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R KKF+ +I I +N ++ + + LT EF +L+ L ++ G V+S Sbjct: 120 RYKKFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFS 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +++ + VW++ D TV HI+ LR K+ + T G+GY + L Sbjct: 180 IEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVEKL 233 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 349 bits (896), Expect = 7e-95, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 128/228 (56%), Gaps = 3/228 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +V+DE G+ L L+QEGF V G L K R D+++LD+ LP + G Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +CR++ A P++ LTA+++++D++LGLE+GADDY+ KPF+ RE+ AR+R +LRR Sbjct: 61 LTICREVRAAG-MTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRA 119 Query: 123 KKFSTPSP--VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + S + +G L+ + PL LT E+ LL+ L + PG V++RQ+L+ Sbjct: 120 EAASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D VW +RTVD H++ +R KL + T G+GY L Sbjct: 180 DLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEA 227 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 348 bits (895), Expect = 7e-95, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 131/232 (56%), Gaps = 10/232 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK---------QVPDVMILDV 55 + +VEDE I D + +LQQEGF V+V G L+ R + PD+++LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 56 GLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARV 115 LP ++G + CR L +P+L L+A+ E DR++GLEIGADDY+ KPF RE+ AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 116 RTLLRRVKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 R LLRR + +P V+R +L ++ D L L+ EF LL+ ++ P RVW Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 SR QL++ +W +T+D HI+ LR K+ A + S + T RG GY L Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 348 bits (895), Expect = 9e-95, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 137/230 (59%), Gaps = 11/230 (4%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+DE I + L + L++ G+ VE+ G L +A + D+++LD+ LP++ G E+ Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60 Query: 66 CRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV- 122 CRQL A +P++ LTA++EE+DR+LGLE+GADDYV KPFS RE+ ARV+ +LRR Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 123 ------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 ++ + IG L+ + Q D +ALT E+ LLK L+ +PGR +SR Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +L++ +W RTVD HI+ LRAKL+ I T RG+GY Sbjct: 181 DELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 10/238 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + +V+DE I L Y L+Q G+ V G L Q ++LD+ LP + Sbjct: 1 MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+ ++L P++ +TA+++E D++ GLE+GADDY+ KPFSPREV AR++ ++R Sbjct: 61 DGMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120 Query: 121 RVKKFS----------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 R V+ +G ++++ +++ ++LT EF LL ++ Sbjct: 121 RTTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVERE 180 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 GRV SR +++ VW + R VD HI LR K+ A I T RG GY G Sbjct: 181 GRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVG 238 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 345 bits (887), Expect = 6e-94, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 130/226 (57%), Gaps = 5/226 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DE + D LV LQ+E + G LD ++ +++LDV +P++ G Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 C ++ +P++ LTARS+E+DR+ GL+IGADDY+ KPFSPRE+ AR+ LRR + Sbjct: 67 ACMRIREF-SNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 125 FS-TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 F+ S + IG EL+ + + P++LTR EF LL +++ +V+SR+QL+D + Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 W RTVDTHIKTLR KL I T G+GY + Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFEEV 228 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 345 bits (886), Expect = 8e-94, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 135/225 (60%), Gaps = 1/225 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + LVED++GI ++L +L +EG+ VEV G+ L+K + PD+++LD+ LP+ G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +E+C+++ + +P++ LTA+ EEVD++LGL++GADDY+ KPF +E+ AR+ +LRR Sbjct: 61 WEVCKEIRKI-SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRY 119 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + S I FE++ + + L+ EF +LK LL SPGRVW+R ++ Sbjct: 120 QSDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKH 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +W + R VD +I+ LR K+ I T R +GY + Sbjct: 180 IWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + V+D+ I L + L +EGF V G L KAR+ PD++ILD+ +P + Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE ++L A +P++ L+AR+EEVDR++G +G DDY KPFSP E+ RV+ +LRR Sbjct: 61 GFETYQKLKAQ-REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR 119 Query: 122 VKKFSTP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + + +++ G+ L+ ++ ++ + LT +F LL + +P RV+++ L+ Sbjct: 120 LGEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D +W+ + D TV HI+ LR K+ + I T GMGY Sbjct: 180 DKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 343 bits (882), Expect = 2e-93, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+++TV +V+DE+ + + L+ F+ E G L + DV+++DV +P + Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GF LC ++ +P+LFLTAR +E D++ GL++G DDY+ KPFSP E+ AR+ ++R Sbjct: 61 DGFTLCARIREQ-SDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMR 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + + G ++E +++ P+ LT EF LL L K G+V+SR+ L+ Sbjct: 120 RAYHNKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW RTVDTHIKTLR KL+ + I T G+GY Sbjct: 180 AQVWGYDYTGNARTVDTHIKTLRMKLKQAS---DFIQTVWGIGYKFE 223 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 114/226 (50%), Gaps = 4/226 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q + +V+DE I + + LQ G+ E G L D++ILDV +P + Sbjct: 71 QMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G R++ A H PV+ LTAR EE D+L GLE GADDYV KPFSPRE+ ARV+ +L R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 122 VKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 S S + G ++ + + ++LT EF LL L + G SR++++ Sbjct: 191 TMPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKIL 250 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW DRTVDTH+K LR + I T G+GY Sbjct: 251 QKVWNYDYFGEDRTVDTHVKMLR---GHLGKCRGYIATVWGIGYKF 293 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 343 bits (881), Expect = 3e-93, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 145/227 (63%), Gaps = 4/227 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+D++ I L L++EG++V G +DKAR+ PD+++LDV LP + G+ Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C+++ +P++ LTAR +E DR++GLE+GADDYV KPFSP+EV AR+R + RR++ Sbjct: 62 VCKEIRRT-SDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQP 120 Query: 125 FSTP---SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 S ++++G L++ + ++ TP+ LT E+ LL+ L PG+V+SR QL++ Sbjct: 121 ASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIE 180 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 V + A + Y+RTVD+HIK LR KL A + I T G+GY L G Sbjct: 181 KVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVG 227 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 342 bits (879), Expect = 5e-93, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 5/232 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ V ++ED+ IA+ + L G ++ GL ++ A DV+ILD+ LP + Sbjct: 1 MLQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+C++L H +P+L LT+RSEE D++ L GADDY+ KPFS RE+ ARV +R Sbjct: 61 DGLEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIR 120 Query: 121 RVKKFSTPS-----PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + PS L+ +++ + +T EF LL +K+PGR +S Sbjct: 121 RYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYS 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R +L+D VW + Y+ TV++HI LR K+ I T G+GY Sbjct: 181 RTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 342 bits (879), Expect = 6e-93, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 V +V+DE+ I L + L Q+ V+ G L+ R D+++LD+ LP + Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +C+Q+ +P++ LTA+ +++D++LGL+ GADDY+ KPF+ EV AR++ +LRR Sbjct: 70 GLSVCQQIREF-SNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR 128 Query: 122 VK---KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + S VI+ G +++ + + D + LT EF LL+ L +PG+V+SR Sbjct: 129 NSSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDN 188 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+ +VW RTVD H++ LR K+ + ++T G+GY Sbjct: 189 LLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFN 237 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 342 bits (879), Expect = 6e-93, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 127/236 (53%), Gaps = 8/236 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQR T+ + ED+ IA+ + L +EG+ + G + + D++ILD+ +P + Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G+E+ R + +P++FL+A++ + D++ GL +GADDY+ KPF+P E+ ARV LR Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 121 RVKKFSTP-------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R ++ + P + I G +++ ++ ++ + LT EF +L L P +V Sbjct: 123 RFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKV 182 Query: 174 WSRQQLMDSVWEDAQD-TYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +S + + VW +A + TV HI+TLR KL I T G+GY+ +G Sbjct: 183 FSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 342 bits (878), Expect = 7e-93, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + V LV+DE+ I L Y L +EGF E+ G L A ++ D ++LD+ LP + Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C++L + P++ ++A+S+E D++L LE+GADDYV KPFSPRE+ ARV+ +LRR Sbjct: 68 GIEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRR 127 Query: 122 VK------KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + P + L ++ L LT E+ LL L+K P + Sbjct: 128 TEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLT 187 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 R++L++ +W R VD HI LR K+ I T RG GY + L Sbjct: 188 RERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKEL 241 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 342 bits (878), Expect = 8e-93, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +VEDE+ I + L++E + V G D PD++ILD+ +P G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +ELC ++ +P++ LTA+ EE DR+LGL +GADDY+ KPFSPRE+ RV+ +LRR Sbjct: 61 WELCGEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRG 119 Query: 123 KK-----FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + + S VI ++ + + + LT EF +L + K P +V+SR Sbjct: 120 NQVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRS 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 QL++ +W+ + TV + LR KL I+T G+GY Sbjct: 180 QLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFE 229 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 340 bits (875), Expect = 1e-92, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 125/231 (54%), Gaps = 7/231 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVP-DVMILDVGLPDIS 61 V +VED+ + D + + L +EG E G L+ P D+++LDV LP + Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 62 GFELCRQLLALHP---ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G +CR+L H +PV+ LTAR +E ++GLE+GADDY+ KPFSPR++ +RVR Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 119 LRRVKKFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 LRR + + SP + E++ +++ + LT EF +L L +PGRV+S Sbjct: 121 LRRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYS 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R+Q+MD +W R+ D HI+ LR K+ + I T RGMGY Sbjct: 181 REQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 340 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 130/243 (53%), Gaps = 18/243 (7%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + LVEDE IA + + L +EG+ VE G +K + D++ILD+ LP + G Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 63 FELCRQLLALHP-ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR- 120 E+CR++ +PV+ LTA+S+E+++++GLE+GADDYV KPFSPRE+ ARV+ LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 121 RVKKFSTP----------------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLK 164 R K+ + V + G + + + L LT EF LL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 165 TLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 ++ + G+V +R++L++ +W RTVD HI+ LR K+ + T RG+GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 225 SLR 227 L+ Sbjct: 241 RLK 243 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 340 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 132/227 (58%), Gaps = 2/227 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +V+DE I + L +EG+ V G L+ K+ PD+++LD +P++S Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+ R++ +P++ LTA++EEVD+L+G E G DDYV KPFS RE+ AR++T+L+R Sbjct: 61 GIEVLREIRKK-SQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR 119 Query: 122 VKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 ++ + V+ G L ++ PL LT EF LL+ LK+PG+ +SR +L+ Sbjct: 120 LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + +A + Y+RT+DTHI LR K+ + I T G+GY L+ Sbjct: 180 EYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLK 226 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +V+DE I L L++E +A++ E G + K + D+++LD+ +P Sbjct: 5 NETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTD 64 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CRQ+ A P++ LTA+ EE +R+ G E G DDY+ KPFSPREV RV+ LLRR Sbjct: 65 GIEVCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123 Query: 122 VKKFS------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + S V+ H ++ A +++ T ++LT E+ LL L K+P +V+ Sbjct: 124 ASQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYD 183 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAI-NPDLSPINTHRGMGYSLR 227 R++L+ VW+ RTVDTH+K LR KL + I T G+GY Sbjct: 184 REKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFE 236 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 340 bits (873), Expect = 3e-92, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 138/227 (60%), Gaps = 6/227 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + LVED+ I + + Y L++EG+ V + E G L+ K+ PD+++LDV LP++ G Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 63 FELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 ++C+++ +P++ L+AR E DR++GLE+GADDY+ KPFSPRE+ AR++ LR Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 121 RVKKFSTPSPV-IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 ++ STP P+ + G E+ + ++ + LT EF LL +K P +V+SR+ L Sbjct: 121 EERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYL 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + VW RTVD HI LR+KL++++P I + RG+GY L Sbjct: 181 LQKVWGYTVSGDTRTVDVHISNLRSKLKSVSP---IIESVRGVGYRL 224 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 339 bits (871), Expect = 4e-92, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 2/229 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ + +V+DE I+ + + L+ G+ V G V + + PD+++LD+ LP + Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G ++CR+L A+P++ LTA + D++ GL+ GADDY+ KPFSP+E+ +R++ + RR Sbjct: 61 GIQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRR 120 Query: 122 VK--KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 ++ S IG + ++ + LT EF LL L K G+V SRQQL Sbjct: 121 IQTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQL 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + VW+ R VD HI LR K+ I T R +GY L Sbjct: 181 LHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHA 229 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 125/226 (55%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ V +VEDE I + L+ G+ V E G L + +PD+++LD+ LP I Sbjct: 4 KKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGID 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+ + P ++ LTA+ ++ D+++GLE+GADDY+ KPF+P E+ AR++ +LRR Sbjct: 64 GLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRR 123 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 ++ G L+ A ++ + + LT E+ LLK +++PG+ R+++++ Sbjct: 124 RDRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLN 183 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +W + +T+D HI+ LR K+ D I T G GY + Sbjct: 184 GIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQ 229 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 338 bits (869), Expect = 8e-92, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 3/227 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VEDE +A + L+ EG+ V V GL L AR+ PD+++LD LP I Sbjct: 1 MSNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG ++C++L +P++ LTA+ + DR+ GL+ GADDY+ KPF+ E+ ARVR LR Sbjct: 61 SGLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLR 120 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R +++ LN ++ + LT EF LL+ L+ P +V SR Q++ Sbjct: 121 R--NHEEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQIL 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + VW ++ +++ LR KL A + I T RG+GY LR Sbjct: 179 ERVWGYDFMGDSNIIEVYVRYLRLKLEAE-QEKRLIQTVRGVGYVLR 224 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 1/224 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 T+ +V+DE + D L L+QEGF V G L AR + PD+++LD+ +P++ G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +E R A PV+ LTA+ E+ D++LGLE+GADDYV KPF+ RE+ AR+R +LRR Sbjct: 61 YEFLRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRT 119 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 ++ V+R L+ + + LT EF +L TL+ +PG+V+SR L+D Sbjct: 120 QQTPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDR 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 V DA + +RT+D HI+ LRAK+ A I T GMGY Sbjct: 180 VSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 6/228 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 V +V+DE+ IAD L + L++EG+ V G +D ++ PD+++LD+ LP Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR++ + +P++ LTA+ E+D++LGLE+GADDYV KPFS RE+ ARV+ LRR Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119 Query: 122 VKKFSTPS-----PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 I I + A I + LT EF L L K G+V +R Sbjct: 120 HYSQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTR 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 + L+ +VW RTVD I+ LR K+ I T RG+GY Sbjct: 180 EHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 126/230 (54%), Gaps = 5/230 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + LVED+ IAD L L G AV+V G L +A + D+++LD+ LP Sbjct: 5 AEKRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTD 64 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF++CR+L P+L +TA++EEVD++LGLE+GADDY+ KPFS REV ARV+ L RR Sbjct: 65 GFDICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRR 124 Query: 122 VK-----KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 V+ + I +G + +++ + LT EF LL + PGR +SR Sbjct: 125 VEVDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSR 184 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +L+D VW Y TV+THI LR K+ + + T G+GY Sbjct: 185 DELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 6/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+R ++ + +DE IAD + L++EG+ V G + Q D+++LD+ +P + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G+E+ RQ+ A H +P++FL+A++ + D++ GL +GADDY+ KPF+P E+ ARV LR Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 121 R-----VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R K + + +G ++ + + + LT EF +L L P +V++ Sbjct: 120 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + + VW D TV HI+TLR KL I T G+GY+ G Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 127/234 (54%), Gaps = 12/234 (5%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 ++ + +V+D+ IA+ + L +E F ++ G + + R+ P++++LD+ LP I G Sbjct: 4 KQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDG 63 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +E+CR++ +P++ L+A+ E D++LGLE+GADDY+ KPF +E+ ARV+ +LRRV Sbjct: 64 YEVCREVRKT-STIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRV 122 Query: 123 KKFSTPSPVI---------RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 + S + +N+ +++F + + E L L P +V Sbjct: 123 VPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQV 182 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++R+QL+D +W RTVD HIK LR K++ ++T G+GY Sbjct: 183 FTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFE 234 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 131/233 (56%), Gaps = 7/233 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +VED+Q IA + L++E F V G L ++QVPD+++LD+ LP + Sbjct: 10 AMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLD 69 Query: 62 GFELCRQLLAL-HPALP-VLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G E+C ++ P +L LTA+ EE+DR++GL GADDY+ KPFSPRE+ ARVR LL Sbjct: 70 GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALL 129 Query: 120 RRVKKFSTP-SPVIRIGHFELNEPAAQISW----FDTPLALTRYEFLLLKTLLKSPGRVW 174 RR + P + R HF+++ Q S L LT EF LL T + PGRVW Sbjct: 130 RRQLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVW 189 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +R QL++ +W + +R VDTHI+ LR K+ + + I T G+GY Sbjct: 190 NRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKA----------RKQVPDVMILD 54 + ++EDE I +T+V LQ+EG+ V G L+ + ++ILD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 55 VGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCAR 114 V LP I+G +LCR + +P+L ++A+ E+DR++GLEIGADDY+AKPF RE+ AR Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 115 VRTLLRRVK-KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R LLRR + + +T PV+R L + + L L+ E+ LL+ ++ P RV Sbjct: 143 CRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRV 202 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W R+QL+D VW +TVD HI+ LR K+ I T RG GY Sbjct: 203 WPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 128/223 (57%), Gaps = 2/223 (0%) Query: 7 WLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELC 66 +VED+ I++ + +L+ E FAV+V G L+ A + +++ILD+ LP + G+E+C Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 67 RQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 R+L A + P++ LTA++EE D++LGL++GADDY+ KPF PRE ARV LLRR Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 ++ P + + + Q + LT EF LL L ++ GR R+QL++ VW Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 RT+D HIK LR K+ + P + + T G+GY L Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLE 231 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + +V+DE I L L++E F + G + A + ++LD+ LP++ Sbjct: 1 MSNE-ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEM 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G ++ +L H P++ LTA+ EE +R+ G E GADDY+ KPFSPREV RV+ LLR Sbjct: 60 DGIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118 Query: 121 RVKKFSTPS------PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 R + + VI H E++ A ++ + + LT E+ LL L K+P +V+ Sbjct: 119 RTQSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVF 178 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPD-LSPINTHRGMGYSLR 227 R+QL+ VW RTVDTH+K LR KL ++ + I T G+GY Sbjct: 179 DREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFE 232 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 335 bits (862), Expect = 5e-91, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 119/233 (51%), Gaps = 8/233 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +V+DEQ IAD + L+ EGF + G + ++ ILDV LPDI Sbjct: 1 MSM-NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDI 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GF LC+++ H PV+ LTA+ EE+D++ GL +GADDY+ KPF P E+ ARV+ LR Sbjct: 60 DGFTLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLR 118 Query: 121 R-----VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + + +I L+ + + + ++LT EF +L L + GRV S Sbjct: 119 RFTKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVS 178 Query: 176 RQQLMDSVWEDAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++L VW D T TV HI+ LR K+ I T G+GY + Sbjct: 179 SEELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 334 bits (858), Expect = 1e-90, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 10/234 (4%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + V +V+DE I L Y L+Q F V+ G L D+++LD+ LP++SG Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+ +++ PV+ LTA+ E D++ GLE+GADDYV KPFSPREV AR+ +LRR Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 123 KKFSTPS----------PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGR 172 +K + + G F ++ ++S D L LT EF L++ L+ + Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 173 VWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 V SR QL+ VW R VD I LR K+ + T RG GY Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +DE+ + D LV L++EG+ GL +++ +++ +++LDV +P++ Sbjct: 4 SMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELD 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G C ++ +P++ LTARSEE+DR+ GL+IGADDY+ KPFSPRE+ AR+ LRR Sbjct: 64 GLTACMRIREF-SNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRR 122 Query: 122 VKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 FS +G ++ +S + LTR EF LL + + +V+SR+QL+ Sbjct: 123 THSFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLL 182 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D +W RTVDTHIKTLR KL I T G+GY Sbjct: 183 DQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEA 227 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 332 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 3/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +T+ +V+DE I + Y L+Q + V + GL ++ +K + D +I+D+ LP + Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E +Q+ +P++ LTA++ +VD++LGLE+GADDY+ KPFSP+E+ +R++ +LRR Sbjct: 61 GIEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRR 120 Query: 122 VKKF---STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + + P ++ + ++ + + + LT EF LL+ L K+ +V SR Q Sbjct: 121 TDRAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQ 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +++ VW R VD HI LR KL I T RG GY Sbjct: 181 ILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 332 bits (852), Expect = 7e-90, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 1 MQR-ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+R V LV+DE+ I + +L++E + + + G L+ +K+ PD++ILDV LP Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 I G+E+CR + +P+L L+A+ E +D+ +G +GADDY+ KPFSP E+ RV+ LL Sbjct: 61 IDGYEVCRTIRET-SKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALL 119 Query: 120 RRVKKFST------PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 RR + I G E+N + ++ P+ LT EF LL + + P +V Sbjct: 120 RRSFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQV 179 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++R+QL +W D T+ I+ LR K+ I T G+GY Sbjct: 180 FTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + ++ED + +EGF E GL + ++ D++ILD+ LP + G Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ +P++ LTA+ E D+++G E+GADDYV KPFSP + AR++ ++RR K Sbjct: 62 ICRKIRET-STVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 120 Query: 125 FST---PSPVIRIGHFELNEPAAQISWFDTPLA-LTRYEFLLLKTLLKSPGRVWSRQQLM 180 +I F +N+ ++ P+ LT EF LL L+++P +V+SR+QL+ Sbjct: 121 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + VW +RTVD HIK LR KL + D + T G+GY Sbjct: 181 EQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKF 224 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 331 bits (851), Expect = 9e-90, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 135/229 (58%), Gaps = 4/229 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +V +VEDE+ +AD L ++L++EGF V G L + + D+++LD+ LP +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++C+QL A +PV+ +TAR E+D+++GLE+GADDYV KP+S RE+ AR+R +LRR Sbjct: 61 TDVCKQLRARSS-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 119 Query: 123 KKFSTPSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 V+ G ++ +S P+ L EF LL+ L+++ GRV +R QL Sbjct: 120 ADNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +D VW +T+D H+K LR+K+ + + T RG+GY L G Sbjct: 180 IDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 127/223 (56%), Gaps = 4/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+D+ +++ + L+ GF V+ G L A PD+++LD+ LP + G E Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R+L A P +PV+ LTAR++E DR+ GLEIGADDYV KPFSPRE+ RV+++LRR + Sbjct: 117 VFRRLRAHRP-VPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 125 --FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + V+R G ++ A + PL LT EF LL LL+ PGR ++R +L++ Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 VW + TV HI+ LR K+ + T G+GY Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 114/222 (51%), Gaps = 2/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + + +D+ L + L EGFAV G LD A Q PD++ILDV +P + GF Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +C ++ A A+P+L LTAR + VD+++G +GADDYV KPF E+ RV +LRR+ Sbjct: 66 VCGRIRAA-SAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM-P 123 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S +R GH E+N+ + D LT EF LL + PG ++R+ L+ VW Sbjct: 124 TLPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVW 183 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 T TV I+ LR K+ I T G+GY Sbjct: 184 HGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKF 225 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 2/228 (0%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+R V ++ED+ I + + + + G++ G L+ + PD +ILD+ LP Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 ++G+E+C+ + +P++ LT + E D + GL IGADDY+ KPF P E+ ARV+T+L Sbjct: 61 LNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR + ++ + ++ ++ + + + E L L +P +V +RQQL Sbjct: 121 RRTILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQL 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +D VW + RTVD HIK +R KL S I T RG+GY Sbjct: 181 LDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRFE 227 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +V+DE+ I L L++ F++E+ G L K + PD++ILD+ LP+IS Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+++ P+L LTA+ E D++ G GADDY+ KPFS RE+ AR++ +LRR Sbjct: 61 GEEVCQKIRQDK-QTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRR 119 Query: 122 VKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + + + G +++ ++ LTR EF +L TL+++PG+V++R+QL Sbjct: 120 SNQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 V YDRT+D HIK +R KL I T G+GY G Sbjct: 180 AKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEG 226 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+D+Q + + + ++EGF V + G VL ++ PDV+ILD+ LP G Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCR+L A+ +P++ LTA+ EE DR+LGLE+GADDYVAKPFSPRE+ AR++ +LRR + Sbjct: 66 LCRRLRAV-RMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 125 FSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 + ++ E+ ++ +T EF LL L ++P RV++R++L+ +V Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 W RTVD HI+ LR KL ++ + T G+GY Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPH--EYLQTVWGVGYKF 225 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 1/222 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE IA+ L L+ GF +RG R++ PD+++LD+ LP G E+ Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C++L + +P++ LTAR EE+DRLLGLE+GADDY+ KPFSPREV ARV+ +LRR Sbjct: 67 CKELRSF-SQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTP 125 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 S I G L+E + ++S L LT EF++LK ++ P RV+SR +L+D Sbjct: 126 QEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAIG 185 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + YDRT+D+HI+ LR K++ PDL I++ G GY Sbjct: 186 SQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 329 bits (845), Expect = 4e-89, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 8/231 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M V + +D+ + + + +++ + G L+ K+ PDV+ILDV +P + Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFE CR++ P++ LTA+ EE DR+LGLE+GADDYV KPFSPRE+ AR+R ++R Sbjct: 90 DGFEACREIRKK-WDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMR 148 Query: 121 RVKKFSTPSP-----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R++ ++ ++ ++ EF LL L+KSPG VWS Sbjct: 149 RLQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWS 208 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R+QL++ VW RT+D HIK +R +L + D I T G+GY Sbjct: 209 REQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKF 257 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 4/229 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M +T+ +V+D+Q IAD L L+ + F V + ++ D +ILD+ +P Sbjct: 1 MNAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGE 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +GF CR++ A +P+LFL+ARS +VD++ GL +G DDY+ K SP E+ ARV+ +LR Sbjct: 61 NGFAFCRRIRAK-SDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 119 Query: 121 RVKKFSTPSP-VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 R P+ ++ GH LN +++ + LT E+ LL+ L+ P V+S QL Sbjct: 120 RSASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +D +W TV H+ LR K+ A D I G+GY G Sbjct: 180 LDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 2/225 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + T+ +V+DE I + L+ G+ V G L A + PD+++LD+ LP + Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+ +L + +L LTARS+E+DR+ GL +GADDY+ KPFSPRE+ ARV +LRR Sbjct: 61 GMEITARLREK-SDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + S V+R H E++ A + L LT EF LL L ++ RV SR+ L++ Sbjct: 120 RRGKPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIE 179 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW DR VD ++ +R K+ A+ + + I T RG+GY Sbjct: 180 KVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRF 223 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 328 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 117/230 (50%), Gaps = 5/230 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +T+ +V+DE I L Y L+QE F V G L A +Q D +ILD+ LP + G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + +++ P++ LTA+ E D+++GLE+GADDYV KPFSPRE+ AR+R + RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 123 -----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + S I +G ++E D L LT EF LL + +V SR+ Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +L+++VW R VD + LR K+ + T RG GY L Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 328 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 136/228 (59%), Gaps = 3/228 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +V +VEDE+ +AD L ++L++EGF V G L + + D+++LD+ LP +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++C+QL A +PV+ +TAR E+D+++GLE+GADDYV KP+S RE+ AR+R +LRR Sbjct: 61 TDVCKQLRARSS-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 119 Query: 123 KKFSTP--SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + V+ G ++ +S + L EF LL+ L+++ GRV +R QL+ Sbjct: 120 GDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLI 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D VW +T+D H+K LR+K+ A + + T RG+GY L G Sbjct: 180 DRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 328 bits (843), Expect = 7e-89, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 126/229 (55%), Gaps = 2/229 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M++ + +VEDE+ IA L L+ EG++V + G LD A + +++LDV LP + Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG E+ R+L PV+ LTAR D++ GL+IGA+DYV KPF E+ AR+R LR Sbjct: 61 SGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR 120 Query: 121 RVKKFSTP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + + +NE ++ D + LT EF LL +LK P +V +R+Q+ Sbjct: 121 QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQI 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + SVW VD +I+ +R KL + I+T RG+GY+++G Sbjct: 181 LSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIKG 228 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 6/231 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +E + +V+DE IAD + LQ E F V F + K+ D+ +LD+ +P IS Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G ELC+++ + P++ LTA+ E+D++ GL +GADDY+ KPF P EV ARV+ LRR Sbjct: 129 GLELCKKIRERY-NYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRR 187 Query: 122 VKKFS----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K+++ ++ LN+ + + L+LT EF +L L + G V S + Sbjct: 188 YKRYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAE 247 Query: 178 QLMDSVWEDAQDT-YDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +L +W+D + + T+ HI+ LR K+ + I T G GY + Sbjct: 248 ELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 3/227 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 T+ LVED+ + +TL Y ++ GF V GL L+ AR+ PD++ILDV LP + G Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR-- 120 F +CR + A +P++ LTA +E R+ GLE+GA DYV KPFS E+ ARVR +LR Sbjct: 61 FSVCRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWN 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 ++ + S V+ +G +L+ + ++ + D + L+ EF LL L+ + G SR L+ Sbjct: 120 ERQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + VW +RT+D H++ LR KL + + I T RG+GY + Sbjct: 180 ERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQ 226 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 6/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+R + +VED+ I + + L +EG+ +E GL ++K + + ++I+D+ +P + Sbjct: 1 MERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E R++ +P++ L+A+ E+ D+++GL +GADDY+ KPFS E+ ARV+ +R Sbjct: 61 DGIESMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIR 119 Query: 121 RV-----KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R K + + G + + ++ L LT E +LK ++P RV++ Sbjct: 120 RAIYYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + Q+ DSVW + + TV H++ LR+K+ + I T G+GY L G Sbjct: 180 KVQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTG 232 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 128/229 (55%), Gaps = 4/229 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q + + +VED+ IAD L L+ E + V G L + D +ILD+ LP + Sbjct: 3 QPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVD 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR+ A+ P++ +ARS EV R+LGLE+GADDY+AKPFS E+ ARV+ LLRR Sbjct: 63 GLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 122 VKKFSTPSPV----IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 V + S + + + ++ A + S L LT EF LL + PG+V+SR Sbjct: 123 VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+++VW + Y+ TV+THI LRAK+ A + I T G GY L Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 5/227 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ V ++EDE+ IAD + LQ E + V G + ++Q D +ILD+ LPD+S Sbjct: 4 NKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLS 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+++ L +P+L LTA+ EE DR+ GL+IGADDY+ KPFSP+E+ ARVR ++RR Sbjct: 64 GEEICKRIR-LQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRR 122 Query: 122 VKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + +I + G +++ + D + LT EF LL +++ G+V+SR +L Sbjct: 123 TNNEGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDEL 182 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + V YDRT+D HIK LR K+ I T G+GY Sbjct: 183 VVKVLGYDYVGYDRTIDVHIKNLRHKIEC--EYYKYIVTVYGVGYRF 227 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 E + +V+DE+ IAD + L+ EGF V F G L+ + D+ ILD+ LPDI Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF +C+++ + P++ LTA+ E++D+++GL IGADDY+ KPF+P EV ARV+T LRR Sbjct: 61 GFHICQKIREKYY-YPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119 Query: 122 VKKFSTP-------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 +++ I +N+ + S F +ALT EF +L L + G+V Sbjct: 120 YMRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVV 179 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++L ++VW + + TV HI LR K+ + + I T G+GY++ Sbjct: 180 PSEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 129/230 (56%), Gaps = 4/230 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ET+ ++ED++ I+ L L +EG+ V + G L + P ++++D+ LP + Sbjct: 12 MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVD 71 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE+CRQ+ +P++ ++AR ++D++ L +GADDY+ KPFSP E+ ARV++ LRR Sbjct: 72 GFEVCRQVRQQ-SEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRR 130 Query: 122 VKKFS---TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 +++ V+ +N + PL LT EF LL TL ++PG+V+S++Q Sbjct: 131 YHRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQ 190 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L + VW+ RTV HIK +R KL + I+T G+GY G Sbjct: 191 LYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIG 240 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 136/228 (59%), Gaps = 3/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++TV++VED+ IA + Y L+ GFAV F G V+ ++ K P++ +LD+ +P Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 62 GFELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G E+CRQ+ PV+FLTA++ E D++ GL++GADDY+AKPFSPRE+ AR++ +L Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR ++ P V+ G ++ A ++ + T EF LL+ L + PGRV++R QL Sbjct: 121 RRFERP-LPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +D+VW + R+VD +++ +R K+ D + T RG GY Sbjct: 180 LDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFE 227 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 326 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + V +VEDE +A L Y L++EG++V V G L +A + PD++++D LP +S Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 62 GFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G E+CR+L +P++ LTAR EE DR+ GL+ GADDYV KPFS E+ AR+R +L Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR++ VI G ++ A ++ D + L EF LL L++ PGRV+SR+QL Sbjct: 121 RRIRP-GLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +D+VW RTVD H+ LR L + PI T R GY+ Sbjct: 180 LDAVWGSDVYVEARTVDVHVGRLRKALN-NKEERDPIRTVRSAGYAF 225 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +T+ +++DE + + L LQ EGF V + G L AR PD+++LD+ +P++ Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G + R P++ LTA+ E+ D+++GLE+GADDY+ KPF+ REV ARVR +LRR Sbjct: 61 GLDFMRAW-NKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 K + V+RIG L A + + + LT EF +L TL+ SPG V+SR L+D Sbjct: 120 SYKAQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLD 179 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 A + Y+RT+D HI+ LR+K+ + I T G+GY Sbjct: 180 RTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 135/230 (58%), Gaps = 5/230 (2%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M + + +V+DEQ I D + L+++GF V G LD + +++LD+ LP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 ++G E+C ++ A+ +P++ LTA++EE +++ G+ +GADDY+ KPFS RE+ RVR LL Sbjct: 61 MTGEEVCNRIRAVSS-VPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALL 119 Query: 120 RR-VKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 RR + FS + ++ G E++ + + LT EF +L L +P +V+SR Sbjct: 120 RRAYRDFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSR 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++L++ + + +DRTVD++IK +R K+ + + + + I T GMGY Sbjct: 180 EKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 5/230 (2%) Query: 1 MQRET-VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+R T V +V+DE+ I + L+ EG+AV G L + D ++LDV +P Sbjct: 1 MERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPG 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 SG+++ R++ + +PVLFLTAR E+ D++ GL +GADD++ K +P EV AR++ +L Sbjct: 61 PSGYDVLRRIRE-NRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVL 119 Query: 120 RRVKK-FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 RR ++ P V+ G ++ A ++ P+ LT EF LL+ + P +V++R+Q Sbjct: 120 RRYRRGEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L +W + TV HI LR K+ + I T G+GY G Sbjct: 180 LFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDG 227 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 85/240 (35%), Positives = 125/240 (52%), Gaps = 16/240 (6%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +DE+ I D L++EG V V E G + ++ PD+++LD+ +P + Sbjct: 1 MGANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C + P++ LTAR EE DRLLGL +GADDY+ KPFSPRE+ RV +LRR Sbjct: 61 GLEVCDLIRQTD-DTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRR 119 Query: 122 VKKFSTPSP---------------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTL 166 S SP I + + ++S ++ + LT EF LL L Sbjct: 120 AGWRSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLL 179 Query: 167 LKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 PG+V+SR QL++ VW+ A D TV H++ LR K+ D + I T G+GY L Sbjct: 180 AMYPGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 3/230 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M T+ + +D+ I + + L+QEG+ V + G + A PD++I+D+ +P + Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E +++ + +P++ L+A+ + VD+++G ++G DDY KPFSP E+ RV+ +LR Sbjct: 61 DGLEASQKI-KMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLR 119 Query: 121 RVKKFSTPS--PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 R K V+ +F + + + + LT EF +L + P +++SR Q Sbjct: 120 RSKAVPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L++ +WE + + TV HI+ LR K+ I T G+GY Sbjct: 180 LLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEA 229 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + +++DE + D + L ++GF V G L+ PD++ILDV LPD Sbjct: 1 MASEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDT 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G ELC+ L + + P+LFL+ + ++D++LGL +G DDY+ KPFSP E+ AR+ LR Sbjct: 61 NGLELCQNLRKITES-PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLR 119 Query: 121 RVKKFSTPSP-----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + + + ++ I ++ + D P+ LT EF +L L + P V+S Sbjct: 120 RNRILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFS 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 QL D +W RTV HI LR K+ + I T +G+GY L Sbjct: 180 LTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 127/224 (56%), Gaps = 3/224 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 R V +V+D+ +A+ L +L++EG+ G + ++ PD+++LD+ LP + Sbjct: 14 SRGRVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRN 73 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G ++C+ + +P++ LTA+ + +D + GLE GADDYV KPF P E+ ARVR LRR Sbjct: 74 GLQICQDIR-TQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR 132 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + + IG +++ PA Q++ P+ALT EF LL L + P +V++R+ L++ Sbjct: 133 GETGQAEN--LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLE 190 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 VW R V+ H++ LRAK+ + T RG+GY Sbjct: 191 QVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 111/228 (48%), Gaps = 1/228 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VED+ I +T+ L+ G G A + PD+++LD LP + Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G LC + PVL LTAR+EE R+ L GADDY+ KPFS +E+ ARV+ LLR Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + G ++ Q+ P+ L EF LL L PGRV+SR +L+ Sbjct: 129 RAYASGYRDCSPKNG-LLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELL 187 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + VW + RT+D H++ LR KL + T G+GY G Sbjct: 188 ERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAG 235 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M++ ++ +V+D+Q I + L QEGF V G L + ILD+ +P + Sbjct: 16 MEKNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHM 75 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G ELCR++ H LP++FL+A+S +VD+++G GADDY+ KPFS E ARV+ LR Sbjct: 76 DGIELCRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 134 Query: 121 RVKKFSTP-----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R F+ I I E++E + + + + LT+ E+ +L + + RV++ Sbjct: 135 RYTYFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFT 194 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++ +SVW++ + TV HI LR K+ + I G+GY + Sbjct: 195 IEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 136/223 (60%), Gaps = 2/223 (0%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVEDE+ I D L L+QEGF V + GL L + PD+++LD+ LP +SG+E+ Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 +++ P++ LTAR +EVD+LLGLE+GADDY+ KPFSPRE+ R++ +LRR + Sbjct: 65 MKKIRQK-NNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPH 123 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + V I + +N + DT LALT EF +L L ++PG+V+SR +++ V+ Sbjct: 124 EQVTNV-SISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFG 182 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D + Y+RT+DTHI LR K+ A I T G+GY L Sbjct: 183 DIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVA 225 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M V +VEDE+ I D + L+ +G+ V G+ L+ Q + I+D+ +P + Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G + +L + PV+ LTA+SEE+D++LGL IGADDYV KPF+P E+ ARV + LR Sbjct: 61 DGITMVMKLRENY-DFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLR 119 Query: 121 RVKKF-------STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R K+ S + IG ELN ++ + +T EF +L+ L+K+PGRV Sbjct: 120 RYSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRV 179 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +S +++ + VW + D TV H++ +R K+ + + G+GY + Sbjct: 180 FSAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIE 232 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 124/234 (52%), Gaps = 7/234 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + LV+D+ I + L +EGF + G + A PD++ILDV LPD+ Sbjct: 1 MTGELILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFE+CR + +P+LFL+ R +++D+++G IG DDY+ KPFSP + A+V++ +R Sbjct: 61 DGFEVCRIIR-TKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIR 119 Query: 121 RVK------KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 R K K ++ + G ++ +++ P++L EF LL L ++ GRV+ Sbjct: 120 RYKELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVF 179 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 S + L DS+W RTV HI LR K+ I T RGMGY G Sbjct: 180 SAEHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 3/228 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGF-AVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M++ + +V+DEQ + + L++EGF + D P + ILDV LPD Sbjct: 1 MEQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPD 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G++LC+Q+ A +P+LFL+A+SEEVD+LLGL IG DDY+ KPFSP+EV RV+ L Sbjct: 61 GEGYQLCQQMRAQ-SNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQL 119 Query: 120 RRVKKFSTP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 RRV P + +G F++NE ++ L LT E LL L++P R+ S++ Sbjct: 120 RRVSMMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKET 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L VW ++ D TV HI+ LR K+ + + I T +G+GY L Sbjct: 180 LFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +V+DE + D + ++EGFAV G L + R + D++ILD+GLP I G Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F + RQ+ A PV+ LTAR++EVDR++GLE+GADDYV KPFSPRE+ ARVR LLRR Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 123 KKFSTPSPVI-----RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 + S I +L+ + ++ D L L EF LL L PG+V++R+ Sbjct: 121 AEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTRE 180 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+ VW + RTVD HI+ LR+KL I+ + + I T G+GY Sbjct: 181 VLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 323 bits (830), Expect = 2e-87, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 134/232 (57%), Gaps = 7/232 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +++DE+ IAD L L+++G V G ++KA+ ++PD+++LD+ +PDI G Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDG 59 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +E+CR++ P++FL+A+ E+DR+ G +G DDYV KPFS +E+ AR+ LRR Sbjct: 60 YEVCRKIRDTVI-CPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRRE 118 Query: 123 KKF-----STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K+ ++ + ++ + ++ P+ LT+ EF +L+ L PG+V+S++ Sbjct: 119 KRAILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKE 178 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 Q+ + VW + TV HIK +RAK+ ++PD I T G+GY + Sbjct: 179 QIYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEKV 230 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + EDE I +V L++ G+ V E G LD +Q D+++LD+ +P++ G Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F +C Q + + ++ LTAR+ E D+++GL +GADDY+AKPFSP E+ AR+++LLRRV Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 123 K--KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + + + G F ++ A ++ + +T E+ LL +K+ +V SR +L+ Sbjct: 121 ETLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELL 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D+VW + +TVD +I+ LR K+ + I T G GY R Sbjct: 181 DAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWR 227 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 121/226 (53%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + ++EDE + L L+ EG+ V G L + + PD+++LDV +P + G Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F LC +L L +P+L LTA+ + DR+ GL+ GADDY+ KPFS E+ ARVR +LRR Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH 120 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 ++ +R G E++ L T E+ +L+ L ++PG SR++ +D Sbjct: 121 QREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDV 180 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 VW A RTVD HI +LRAK+ + I T G+GY L G Sbjct: 181 VWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 132/229 (57%), Gaps = 1/229 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +V+DE + + + L ++G+ + G L + + ++ILDV +P++ Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+E+C ++ + ALP+L LTAR+E D++ GL+IGADDY+ KPF P E+ ARV LLRR Sbjct: 61 GWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRR 120 Query: 122 V-KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 +T + + +++ ++ D P+ LT EF LLK LL +P +V++R QL+ Sbjct: 121 AVVNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLL 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +W +RTVD+HIK++R KL+ + I T G+GY L+ + Sbjct: 181 LKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKEI 229 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 7 WLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELC 66 LV+D+ I + L+ GF V G L + + DVM+LD+ LP++ GF++ Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 67 RQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV-KKF 125 ++ LPV+ LTA +E DR++GL+ GADDY+ KPFSPRE+ +RVR +LRR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + ++R ++ ++ D L LT EF LL L P +V+SR+ L+D VW Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D RTVD H+ LR KL A N + T G GY Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRF 222 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 RE + ++ED+ I+ L L+ EGF V G L+ A+ D+++LDV LP +S Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+++ +P++ LTA+ E D+++G + GADDY+ KPFS E+ AR++ LLRR Sbjct: 61 GMEVCKRIRET-SQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWF--DTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 KK + +N ++ + L++ EF LL L+ + G V SR ++ Sbjct: 120 TKKSVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKI 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ VW D +D +IK LR K+ + I T RG+G+ + Sbjct: 180 LEEVWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIFK 226 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 127/229 (55%), Gaps = 5/229 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ + +VED++ I + L +EG+ G ++K R ++ILD+ LP + Sbjct: 3 EQIKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVG 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+E+ +++ PVL L+A+ EE D+++GL +GADDY+AKPF E+ ARV+ LRR Sbjct: 63 GYEVLQKIREKG-NTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRR 121 Query: 122 VKKFS----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 FS + +IR + E+N ++ D + LT EF +LK L++P +V+++ Sbjct: 122 YLNFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKN 181 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 QL S+W + + TV HI+ LR K+ + S I T G+GY L Sbjct: 182 QLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKL 230 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +VED+ + + L+ GF V G LD A + PD+++LD LP I G E Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ + +P++ LTA +R+ GLE GADDY++KPFSPRE+ RV+++LRR Sbjct: 101 VCRRIRSRG-DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 TP +G F L+ A I LALT EF LL LLK PG+ +SR+QL+ SVW Sbjct: 160 DLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVW 219 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 TV ++ LR K+ + + T G+GY L Sbjct: 220 GWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLN 261 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +E V +V+DE I L L G+ V G L+ +++PDV+ILD+ +P + G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + +C+++ +P++ LTA + DR+ GLE+GADDYV KPFSP+E+ AR+R +LRR Sbjct: 74 YGVCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT 132 Query: 123 KKFS-----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K + T S +I ++ QI + + LT EF LL+ L+ G+ +SR Sbjct: 133 NKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRA 192 Query: 178 QLMDSVWED--AQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ VW + R VD HI LRAKL + I T RG GY + Sbjct: 193 DILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+DE IAD + L+ E + V + L+ K D+ ILD+ LP S Sbjct: 1 MSDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +C+++ H P++ LT + EVD++ GL IGADDY+ KPF P E+ ARV+ LRR Sbjct: 61 GLTICQKIRDKH-TYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119 Query: 122 VKKFS----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 KKFS VI +N + + L+LT EF +L+ L ++ G V S + Sbjct: 120 YKKFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSE 179 Query: 178 QLMDSVWEDAQDT-YDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L +W D + + T+ HI+ LR K+ + I T G+GY + Sbjct: 180 LLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 132/234 (56%), Gaps = 10/234 (4%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR---KQVPDVMILDVGLPD 59 + +VEDE+ +A + L++EG VEV G L++ + PD+++LD+ LP+ Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + G E+CR++ P+L LTARS E+DR+LGLE+GADDY+ KPFS RE+ ARV +L Sbjct: 61 VDGLEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAIL 119 Query: 120 RRVK------KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 RRV+ + + I G ++ + +++ P+ LT EF LL L +PGRV Sbjct: 120 RRVEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRV 179 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +SR L+ VW + DRTVDTHI LR KL I T G+GY Sbjct: 180 FSRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 2/225 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + L+ED+ I ++ L +G V G L+ DV+++D+ LPDI GF Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E CR+L +P++ +TAR++ D + GLE GADDYV KPF +E+ AR+R LLRR + Sbjct: 79 ECCRRLRR-SSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSR 137 Query: 124 KFSTPS-PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 P+ VI I E+ A + L LTR EF LL L +P RV+SR+QL++ Sbjct: 138 SAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLER 197 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW R VD H++ LR K+ + T RG+GY ++ Sbjct: 198 VWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQ 242 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 3/225 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + L+ED++ IA + L++E F V G + ++++D+ LP + GF L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK- 124 C ++ A +P++ ++A+ + D++ +GADDYV KPFSP E+ ARV+ +RR ++ Sbjct: 63 CEKIRA-SSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERS 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + ++ E++ ++ ++LT EF LL L PGRV+++++L +VW Sbjct: 122 YPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAVW 181 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 RTV H+K +R KL+ I T G+GY GL Sbjct: 182 NGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIGL 225 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + EDE I ++ L++ GF V G + ++ DV++LDV +P++ G Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 FE C + L + ++ LTAR+ E D++ GL GADDY+AKPFSP E+ AR++ LLRRV Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 123 KK-FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 +K S ++ G F ++ A Q++ + + LT E+ L+ L+++ V SR L+D Sbjct: 121 EKVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLD 180 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW +TVD +I+ LR K+ I T G GY R Sbjct: 181 AVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWR 226 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 7/231 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 V +++DE I + + L EG+ V G ++ ++ V++LDV +P I G Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F++C ++ + +P++ L+A+S++VD++ GL GADDY+ KPF+P E+ ARV++ +RR Sbjct: 61 FQVCMKIRKDY-NIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRY 119 Query: 123 ------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 S +I +N+ ++ + L LT E+ +L L + G V+S Sbjct: 120 VFLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSA 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + + VW++ + TV HI LR K+ + I T G+GY + Sbjct: 180 EDIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 95/238 (39%), Positives = 124/238 (52%), Gaps = 12/238 (5%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M + TV LVEDE+ I L L+QE F V E P L+ R+ D++ILDV +P Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + G+ CR++ +P+LFLTAR EE DR+LG E+GADDYV KPFSPRE+ RV+ LL Sbjct: 61 LDGWTTCRKIREF-SEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALL 119 Query: 120 RRVKKFS---------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 RR TP + L + L+L+ E+ LL L ++ Sbjct: 120 RRRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNA 179 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRA-INPDLSPINTHRGMGYSLR 227 GRV SR L+D VW RTVDTH++ LR KL S + T RG GY Sbjct: 180 GRVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFE 237 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 5/230 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ V +VEDE IA+ + L F + G + ++ PD +ILD+ LPD Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G E+CR++ H + +L L+AR + D++LGL GADDY+ KPFS E+ AR+ LR Sbjct: 61 DGIEICRKIRE-HSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLR 119 Query: 121 RVKK----FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 R + V+ I + +N+ + P+ L+ EF LL L K+ +V+S+ Sbjct: 120 RQDRWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSK 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 QL+D+VW + T+ +I+ +R K+ + T G+GY Sbjct: 180 SQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 4/231 (1%) Query: 1 MQRET--VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLP 58 M +T + +VED+ I L L+ EG+ V + G L +A + PD+++LDV LP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 59 DISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 +++GFE+ ++L PV+ L+A+ E D+++GL +GADDYV KPF +E+ AR++ + Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120 Query: 119 LRRVKKFSTP--SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 LRR + P + G ++ A ++ TP+ LT EF LL L PGR ++R Sbjct: 121 LRRRYPSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++L+ W + RTVD ++ LR K T RG+GY Sbjct: 181 EELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 1/227 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +VED+Q I L ++L+ E + G ++ ++ D++ILD+ LP G Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F + +++ +PV+ LTAR EE+D++ G +G DDY+ KPFSP E+ R++ +LRR Sbjct: 61 FSVLKEI-KNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRY 119 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 +K +++ G +N ++ P+ LT E+ LL+ L K+P R+++++Q+MD Sbjct: 120 RKGRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDR 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +W D V ++ LR K+ I T G+GY + Sbjct: 180 LWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYKAEKI 226 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +VED+ IA+ L GF VE G L AR+ D+++LD+ LP + G Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F +CR+L + +PVL +TAR EEVD L GL +GADDY+ KPF+P E+ ARVR+ + R Sbjct: 61 FAVCRELRR-YKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARY 119 Query: 123 KKF----STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 ++ V++ G E+ A ++ + TR EF LL L + P V+SR+ Sbjct: 120 ERILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREA 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L + VW TV HI +R K+ + T RG GY R Sbjct: 180 LFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 3/228 (1%) Query: 1 MQRE--TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLP 58 M+ + +V ++ED+ IA+ + +++ G+ +V G L+ + PD + LD+ LP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 59 DISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 I G+ELC+++ + +P++ LT + E D++ GL+IGADDYV KPF P E+ AR++ + Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 +RR + V+ + +++ + + D + + E LL L P +V++RQQ Sbjct: 121 MRRADLLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQ 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D +W A + RT+D HIK +R KL + + I T RG+GY Sbjct: 181 LLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAKWT-IKTIRGVGYKF 227 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 4/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +E V ++ED++ I + L++ + V + G ++ + P +++LD+ LP + Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+E+C+++ + P++FL+ + + D++ GL+ GADDY+ KPF E+ AR++ LRR Sbjct: 61 GYEICQKIR-MLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRR 119 Query: 122 VK---KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 K + P V G+ E++ + + ++L E LL L+++ V+S ++ Sbjct: 120 SKMNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEK 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + D +W +TV HI LR K+ I T RG GY Sbjct: 180 IYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q+E + +V+DE I L L G+ V G L RK+ P +++LDV +P + Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+ +C++L +P++ LTA E DR+ GLEIGADDYV KPFSP+E+ AR+R++LRR Sbjct: 64 GYGVCQELRKE-SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122 Query: 122 VKKFST-----PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 K +T S +I IG +++ Q+ + + LT EF LL+ L+ G +SR Sbjct: 123 ADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSR 182 Query: 177 QQLMDSVWED--AQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ VW + R VD HI LRAKL + I T RG GY + Sbjct: 183 ASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 88/258 (34%), Positives = 126/258 (48%), Gaps = 36/258 (13%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VEDE IA+ + L +EGF + G LD+ R PD++ILD+ +P + G E+ Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 66 CRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV- 122 C ++ + ++ LTAR EE+DR++GL GADDY+ KPFSPRE+ ARVR +LRR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 123 KKFSTPSPVIRIGHFELNEPAAQIS---------------------------------WF 149 + P + HF ++ S Sbjct: 123 RGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLEIA 182 Query: 150 DTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAI 209 PL LT EF LL T + PGRVW+R QL+D +W + +R VDTHI LR K+ Sbjct: 183 QIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPD 242 Query: 210 NPDLSPINTHRGMGYSLR 227 + + T G+GY Sbjct: 243 PSAPTFVKTVVGVGYRFE 260 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +R V +V+DE + + + L E V GL L R PD+++LDV +P + Sbjct: 5 KRPVVLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLD 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G++ +++ A+PV+ LTAR DR+ GL +GADDY+AKPF RE+ ARV+ +LRR Sbjct: 64 GWQTLQRIREE-SAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRR 122 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + IR G + + PL LT EF LL L PG+V+SR++L+D Sbjct: 123 SAGQVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLD 182 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +W RTVD HIK LR KL I T G+GY Sbjct: 183 RIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRF 224 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +TV +VEDE I + ++EGF V G L + + D+ ILD+ +P + Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +CR + + P++ LTA+S+E D+LLG E+GADDY+ KPFSP+ + A+ + LLRR Sbjct: 61 GLAVCRNIREV-SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + ++ +N+ + ++ L L+ E+ LL L + G SR +++D Sbjct: 120 TGTLN-DKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILD 178 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW RTVDT+IK LR KL + I T RG GY Sbjct: 179 NVWGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFE 221 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 3/224 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+D++ +A+ + +L+ +GF G L+ R PD+++LD+ LP Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CRQ+ +P++ LTA+S+ D + GLE GADDYV KPF P E+ ARVR LR Sbjct: 90 GIEVCRQIRGE-SDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR- 147 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 +RI ++ ++ ++LT EF LL L + P +V++R+ L++ Sbjct: 148 -PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLE 206 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 VW R V+ H++ LR+K+ + T RG+GY Sbjct: 207 QVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +VEDE IA + L++EGF V+ RG L D +LD+ LP G Sbjct: 47 RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGIS 106 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R L +LP+L L+ARSE D++ GL GADDY+ KPFS E+ AR+R L+RR Sbjct: 107 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 166 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V ++G+ LN ++ + LT EF +L+ L+++PGRV++R Q+ + VW Sbjct: 167 IGL--SVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW 224 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 D VD +I+ LR K+ + I T RG+GY + L Sbjct: 225 NYHFDPGTNLVDVYIQKLRKKI-DEGEEQKLIQTVRGVGYKIEAL 268 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 99/226 (43%), Positives = 132/226 (58%), Gaps = 3/226 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ LV+DEQ I D + Y L++ G+ V+ E G L +R + D+ +LD+ +P ++G+E Sbjct: 7 TILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYE 66 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCR L A PVLFL+AR E+D+++GLEIGADDY+AKPF RE+ ARVR LLRR + Sbjct: 67 LCRNLRTRTNA-PVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125 Query: 125 FSTP--SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + P I G L+E + + LT EF LL L+K G+V SR+ L+ Sbjct: 126 DAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLRE 185 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 W T +TVDTHIK LR KL A D I T RG GY R Sbjct: 186 AWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 318 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 138/229 (60%), Gaps = 7/229 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 ++++ED++ I + L Y ++EGF V F G + +++ PD+++LD+ +P++ G Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 63 FELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 E C+ + + +P++ LTA+S E+D+++GLE+GADDYV KPFS RE+ ARV+ LLR Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 121 RVK--KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 R K F T P + G +++ +++ P+ LT +F LL L+ S G+V SR Sbjct: 121 RSKSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++ VW +D YDRT+D HIK LR L+ + I T RG+GY Sbjct: 181 IIEHVWAWDKDVYDRTIDVHIKKLRELLKEYG---NCIKTIRGVGYKWE 226 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 318 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 3/226 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+D+ + D + LQ+ G+AVE+ G L ++ PD+++LD+ LP + G E Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK- 123 +CR+L +PV+ LTA EE DR++GLE GADDYV KPFSPRE+ RV ++LRR + Sbjct: 70 VCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 V+ G L+ A + + LALT EF LL LL+ PGR +SR +L++ V Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 W + TV H++ LR K+ INT G+GY + Sbjct: 189 WGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDPV 233 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 5/230 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +V+DE+ I + L L+ EG+ V + G L K+ +M+LDV +PD+ Sbjct: 1 MNNNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE+C ++ + +P+L L+A+ E++D++ G+ GADDYV KPF+ E+ R+R L RR Sbjct: 61 GFEVCSKVRERY-NIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRR 119 Query: 122 VK----KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K +IRI +++ +I+ + ++LT EF +L L + GRV+S + Sbjct: 120 TYFLNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAE 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ + VW++ + TV H+ LR KL I+T G+GY + Sbjct: 180 EIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +VEDE +A + L+ EGF V + G +D + ++ ILD+ LPD+ G Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+ + + PV+ LTA+ ++D+++ +GADDY+ KPFS E+ ARV+ +LRR Sbjct: 61 SEVLQYIRRKTSK-PVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRT 119 Query: 123 KKFS-------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + ++ G E+N ++ ++L EF LLK L + P RV + Sbjct: 120 EGTHHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 Q+ +SVW D TV HI LR K+ + + T RG+GY L Sbjct: 180 IAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFA-VEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+DE+ I + L +L++EGF + G + R+ PD+++LD+ LPD+ Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+ +C Q+ +P+ FL+A++E++D++LGL IG DDY+ KPFSP+EV +++ RR Sbjct: 70 GYSVCEQIRQFTF-VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRR 128 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + + G ++E + T L LT EF +L L+K+P +++S+ +L + Sbjct: 129 NQYKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYE 188 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW + D + H++ LR K+ + + T RG+GY L Sbjct: 189 AVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLN 234 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 130/232 (56%), Gaps = 7/232 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + +VED+ I D L ++ VE GL L+KA+ + D+++LD+ +P + Sbjct: 6 MANQ-ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKL 64 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G E+CR+L P++ +TA++EE+D++LGLEIGADDY+ KPFS RE+ AR + ++R Sbjct: 65 NGVEVCRELRKTK-NTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMR 123 Query: 121 RVKKFSTPSP-----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R + + + G ++N +++ + L+ EF LL L PGR +S Sbjct: 124 RSDAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYS 183 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R +L+D +W Y+ TV++HI LRAK+ + I T G+GY Sbjct: 184 RSELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFN 235 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 119/221 (53%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + LVEDEQ +A ++ L F V + + D+++LD LPD G L Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 C+QL +PV+ LTAR E D +LGLE GADDY+ KPFS E+ AR + LLRR Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 + +I ++ + ++ FD PL+LT EF LL L + P +V+SR QL+D+VW Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D ++ TV++HI LR KL I + T G+GY Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 134/240 (55%), Gaps = 12/240 (5%) Query: 1 MQRE---TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGL 57 M + ++ +V+DE I + LV L GF V G ++ K PD+++LDV L Sbjct: 6 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVML 65 Query: 58 PDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 PDI GF + R++ A PVL+LTAR + D+++GL +G DDYV KPFS EV AR+R Sbjct: 66 PDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 125 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 +LRR ++ P+IR+G E+NE + +S P+ L+ E+ LL+ L+ + GRV S+ Sbjct: 126 ILRRTQEQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKA 185 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKL------RAINPDLS---PINTHRGMGYSLRG 228 Q++D VW+ V+++I LR K+ A + I T RG+GY +R Sbjct: 186 QILDHVWQYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRA 245 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +++DE+ + L +QEGF V V G L D +ILD+ LP I G Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC ++ + ++ LTA+ ++D++LGLE+GADDY+ KPF+ RE+ AR+RTL+RR +K Sbjct: 78 LCNRIRQQ-SDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEK 136 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + ++ + ++ + + LT EF +L L+++ GRV+ R+++ VW Sbjct: 137 GEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVW 196 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + RT+D H+K LR KL+ I I T G+GY R Sbjct: 197 GEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFR 238 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + + +D I D L ++E + G + R+ P V++LDV +P G Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +E+CR++ A +PV+ +TAR E+ ++++GL+IGADDY+ KPFSP EV AR+R +LRR+ Sbjct: 61 YEVCRKIRAK-SDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRM 119 Query: 123 ---KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + T V+ I + E+N + T ++LT+ E + TL +P +V++R L Sbjct: 120 TKKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +DS+W RTVD+HIK LRAKL + I T G+GY Sbjct: 180 LDSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFE 227 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQV-PDVMILDVGLPDI 60 ++T+ LVEDE +A + Y LQ+EG+ V G L++ ++ PD ++LD+ LPDI Sbjct: 9 AQKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDI 68 Query: 61 SGFELCRQLLAL--HPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 SG E+C+ L +PV+ +TA+ E+DR++G E+GADDYV KPFS RE+ R+R L Sbjct: 69 SGTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRAL 128 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 LRR ++ + +I ++ ++ + ++LT EF LL + GRV +R Sbjct: 129 LRRTERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDA 188 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+ VW D RTVDTH+K LR KL + T RG+GY R Sbjct: 189 LLSDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFR 234 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +V+D++ + + L G+ V G+ L+ + +ILDV +P + GFE+ Sbjct: 13 ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFEM 72 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-- 123 +QL +PVL LTA EE DR++GLE+GADDY+ K FS RE+ AR+R + RR + Sbjct: 73 LKQLRKQ-SDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLS 131 Query: 124 -----KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 K + G E++ A PL LT E+ LL TL K P RV SR Q Sbjct: 132 MDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRDQ 191 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+D+V + D +DR+VD HI +LR KL + I T R +GY Sbjct: 192 LLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFN 240 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 119/232 (51%), Gaps = 8/232 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 E + +++DEQ IAD L L+ E + V F + D+ ILD+ LPD++ Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF LC+ + + P++ LTA+ EE D++ GL +GADDYV KPF P EV ARV+ LRR Sbjct: 78 GFSLCQLIRKKY-TYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRR 136 Query: 122 VKKFSTP------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 KK+S + LN + ++LT EF +L LL S G V S Sbjct: 137 YKKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVS 196 Query: 176 RQQLMDSVWEDAQDT-YDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++L +VW+D + T+ HI+ LR KL + I T G+GY + Sbjct: 197 IEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V +V+DE + + L L +EGF V+ G L+ A D+++LD+ LPD+ G+++ Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR---V 122 C+++ + +L LTARSE D++ GL IGADDY+ KPF P E+ ARV +L+RR Sbjct: 76 CKKIREKD-HVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + + H + ++ D + T+ EF L +L KS R +SR++L++ Sbjct: 135 QSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNL 194 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +W D + R VDTHIK +R K + +PI T G+GY G Sbjct: 195 IWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNG 240 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 TV ++EDEQG+ L L++EG+ V GL L+ +KQ PD+++LD+ LP++SG Sbjct: 8 YTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGE 67 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+ R++ P+L LTA+ E +++ GL IGADDYV KP SPRE+ AR++T+LRRV Sbjct: 68 EIARKIRKEQ-ETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVG 126 Query: 124 KFST--PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 K +I G ++ A +I T ++LT+ EF +L TL P +V+SR+ L D Sbjct: 127 KEPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLAD 186 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++ + RT+DTHIK LR K+ I T G GY Sbjct: 187 RIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 132/227 (58%), Gaps = 8/227 (3%) Query: 7 WLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELC 66 +VEDE +A + L++ G+ V + GL +D AR+ PDV+ILD+GLP I G E+C Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 67 RQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF- 125 R+L V+ LTARS+EVD L+GL +GADDY+ KPFSPRE+ AR++ +LRR + Sbjct: 127 RRLR-TFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKT 185 Query: 126 ------STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 +T ++ G ++ A ++ D + LTR EF LL TL + P V+SR+QL Sbjct: 186 GQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQL 245 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +D VW + + VD HI LR KL + T RG+GY + Sbjct: 246 IDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 V +V+DE I D + L+ GF V G L +A PD++ILDV LPD GF Sbjct: 21 PRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGF 80 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+CR+L A + V++LTAR D++ GL G DDY+ KPF+ E+ ARVR +LRR + Sbjct: 81 EVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTR 140 Query: 124 KFSTPSP----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + ++ EL+ A + D P+ L+ EF LL+ L +P RV SR Q+ Sbjct: 141 RPAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQI 200 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + +VW+ D VD ++ LR KL I+T RG GY+LR Sbjct: 201 LAAVWDRDFDGEPTVVDQYVSYLRRKLGQHG--PPLIHTQRGFGYALR 246 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + ++EDE +A + L EG+ V V G+ L A Q PD+++LD LP ISG E Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR+L + +PV+ +TAR E DR GL+ GADDYV KPFS +E+ +R+R LR + Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR--QP 127 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + + L+ +++ + + LT E+ LL+ L++ P +V +RQQ+++ VW Sbjct: 128 RRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVW 187 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ +I+ LR K+ + I T RG+GY LR Sbjct: 188 GCDFTGDSNIIEVYIRYLRLKIEG-PGEKRLIQTVRGVGYVLR 229 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 10/235 (4%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDK--ARKQVPDVMILDVGLPD 59 + + L+ED+ +A+ + L + V G LD A+++ D++ILD+ LPD Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 60 ISGFELCRQLL----ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARV 115 + G ++C+++ + +P++ LTA+ + DR+LGLE+GADDY++KPF PRE+ AR+ Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 116 RTLLRRVKKFSTP---SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGR 172 R +LRR ++ + S + G + + +++ D P+ LT ++F LL G+ Sbjct: 121 RAVLRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGK 180 Query: 173 VWSRQQLMDSVWEDA-QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 V +R+QL ++ D D DR +D HI LRA + I T RG+GY Sbjct: 181 VLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +VED+ IA+ L+ F V++ G+ L++ ++ D++ILDV LP + G Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F++ R + +PVL ++A+ EE+D++ GL +GADDY+ KPFSP E+ ARV++ ++ Sbjct: 61 FDILRII-HDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNY 119 Query: 123 KKFSTP------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 ++ + VI I E+N+ + Q+ D + L + EF LL + + P RV+ + Sbjct: 120 ERLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGK 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +L +S+W TV HI+ +R K+ I T G+GY +R Sbjct: 180 DELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIR 230 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 131/228 (57%), Gaps = 9/228 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEG-FAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 + ++ ++ED+ IA ++ Y L+QEG F V + G L + P++++LD+ LP + Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 61 SGFELCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 +GFE+CR+L +P++ LTAR++E D++ GL +GADDY+ KPFS RE+ AR+ + Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 LRR + TPS V G ++ + + LTR EF LLK L +S GRV +R+ Sbjct: 121 LRRTEG--TPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREY 178 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D VW D RT+D HI+ +R KL I T G+GY Sbjct: 179 LLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRF 222 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+DEQ +A + L + GF G +D+AR+ PDV++LD+GLP++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ +L LTAR E D++ GL +GADDY+ KPFS RE+ RV +LRR + Sbjct: 102 VCRRIR-TFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 125 FSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 +TP V + +G L+ A Q+ +T + LTR EF LL L PG+V +R L+ Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 VW+ +R VD HI LR KL I+T RG+GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 10/235 (4%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR-KQVPDVMILDVGLPDI 60 + + +V+D++ IAD + L EG+ V + L + ++ + ILD+ +P + Sbjct: 23 AKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGM 82 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G + +++ +PV+ L+A+S ++D+++GL GADDYV KPF+P E+ ARV+ LR Sbjct: 83 DGLSMVKKIRET-SHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLR 141 Query: 121 RV--------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGR 172 R + +I G +N+ ++ +D LT E+ +L L +PGR Sbjct: 142 RFTEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGR 201 Query: 173 VWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V+S + VW + + TV HI+ LR K+ + I T G+GY + Sbjct: 202 VFSTDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIE 256 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +VEDE I + + ++L+Q GF E +++ + PD+++LD LP S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 62 GFELCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G + + L +PV+ LTAR EE DR+ GLE GADDY+ KPFSP+E+ AR++ ++ Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR+ + VI + L+ + ++ + PL + EF LL + P RV+SR+QL Sbjct: 121 RRISPMAVE-EVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++ VW DRTVD HI+ LR L + T RG GY Sbjct: 180 LNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 2/225 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +T+ +V+DEQG+ + L+ +G+ + E G L + VPD+++LD+ +P + G Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+CR++ + +PV+FL+ R +D++ E+GADDY+ KPF E+ AR++ +R Sbjct: 61 LEVCREIRSQLS-IPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMY 119 Query: 123 K-KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 S+ P +R GH ++ A + ++LT E LL K P +VW+ +QL D Sbjct: 120 AMNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYD 179 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +W Y TV HI LR K+ I T RG GY Sbjct: 180 RIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRF 224 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 6/231 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 V + +DE+ I + L L+++G + GL L D+ I+D+ +P I G Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + L R++ + +PV+ L+A+SE D++LGL++GADDY+ KPF+ EV ARV+ LRR Sbjct: 61 YHLVRKIRENY-DMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRY 119 Query: 123 KKFSTPSPV-----IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K + + G LN + + + LT E+ +L LL++ G+V++++ Sbjct: 120 NKSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKK 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 Q+ + VWE+ D + HI LR K+ + + I T RG+GY L Sbjct: 180 QIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDS 230 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +VEDE A L L +EG+AV+V G + +A + D ++LD+ LP + GFE Sbjct: 31 RVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGFE 90 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR+L PVL LTAR + DR+ GL+ GADDY+ KPFS E+ AR+R L+RR Sbjct: 91 VCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR--G 148 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+RIG L+ ++ +PL L+ EF LL L++ P V +R ++D VW Sbjct: 149 AVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVW 208 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + A D VD +++ +R K+ I S I T RG+GY LR Sbjct: 209 DFAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRLR 250 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQV-PDVMILDVGLPDI 60 V ++EDE+G+ D L L+ G+ V E G LD + +++LD+ LPDI Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG+ L + + +PV+ +TAR EE D+LLG E+GADDYV KPFSPREV ARV+ +L Sbjct: 61 SGWSLLKTIRET-SKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILS 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R ++ + +++ + LT EF LLK LL + G+V SR++ + Sbjct: 120 RTYGSQDDGKT-EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCL 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + VW RTVDTHIK LR KL + I T G+GY L G Sbjct: 179 NEVWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEG 223 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 315 bits (808), Expect = 8e-85, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 2/226 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VED++ +A L L+ EG+ V + G L+ R+ ++ILD+ LP + Sbjct: 1 MNNP-ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRM 59 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG E+C++L + + P++ LTAR + D++ GL +GADDY++KPF+ E+ AR+ +LR Sbjct: 60 SGLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLR 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + S PS + +G E++ + L L+ EF +L+ L +S G+ R+++ Sbjct: 120 RTHQ-SKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIY 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW +RT+D HI LR+KL + I T G GY Sbjct: 179 QEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 13/240 (5%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +VEDE+ IAD + L +G+ V GL L Q + I+D+ +P + Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G L +L + PV+ L+A+SEEVD+++GL IGADDYV KPF P E+ ARV + LR Sbjct: 61 DGITLTMRLRENY-NFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLR 119 Query: 121 RV-----------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKS 169 R +K + V IG ELNE +++ + T EF +L L+++ Sbjct: 120 RYTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRN 179 Query: 170 PGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 GRV+S ++ + VW + D TV H++ +R K+ + + G+GY + + Sbjct: 180 AGRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKI 238 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 133/231 (57%), Gaps = 6/231 (2%) Query: 1 MQR--ETVWLVEDEQGIADTLVYMLQQEGF-AVEVFERGLPVLDKARKQVPDVMILDVGL 57 M R V +++DE+ I + + +L +EG V L + ++ PD++ILD+ L Sbjct: 33 MSRLHSKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIML 92 Query: 58 PDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 PD G+++C+Q+ + +P++FL+A+ EE D+++GL IG DDY+ KPFSP+EV RV+ Sbjct: 93 PDGEGYDICKQIRDI-SHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKA 151 Query: 118 LLRRVK--KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 LRRV + S +I+ G FELN+ A+++ + + LT E +L+ L+ P RV S Sbjct: 152 QLRRVSYLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVIS 211 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++ L +VW + D TV HI+ LR K+ + T +G+GY Sbjct: 212 KETLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 262 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + + + +D + +T+ L+ + G L+K + PD++ILD+ +P I G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+C+++ + +P++ LTA+ EE+DR++GLEIGADDY+ KPFSPREV R++T+ RRV Sbjct: 65 EVCKEIRKI-SNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVG 123 Query: 124 KFSTPSPV----IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + + + +F ++ +I + +T E +L L + GRV SR+++ Sbjct: 124 NANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEI 183 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +D VW R VDT IK +R K+ S I T G+GY L Sbjct: 184 LDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKFEVL 232 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 1 MQRE---TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGL 57 M + ++ +V+DE I + LV L GF VE G ++ + P+++++DV L Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60 Query: 58 PDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 PDI GF + R++ +PVLFLTAR + D+++GL +G DDYV KPFS EV AR+R Sbjct: 61 PDIDGFTVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 +LRR ++ + +I++ E+NE + ++ P+ L+ E+ LL L+ + GRV S+ Sbjct: 121 ILRRTQEPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKS 180 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLR-----AINPDLS----PINTHRGMGYSLR 227 Q+++ VW+ V+++I LR K+ + I T RG+GY +R Sbjct: 181 QILNHVWQYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIR 239 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M +T+ +V+DE I D L L+ +AV + PD+++LD LP Sbjct: 1 MIEKTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGT 60 Query: 61 SGFELCRQLLAL--HPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 SG EL R+L +P++ LTA+ EE +++ GLE+GADDY+ KPFSPRE+ AR++ + Sbjct: 61 SGIELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 LRR P I++ L+ + +++ D P+ + E+ LL+ L RV++R Q Sbjct: 121 LRRTDSMGISEP-IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D VW +RTVD HI+ LR L D I T RG GY Sbjct: 180 LLDHVWGGNVYVEERTVDVHIRRLRKALSLEGHD-RFIQTVRGAGYRF 226 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 V +++D+ I L L EG+ VEV G ++ A++ P+++ILD+ LP + Sbjct: 1 MGARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+E+C++ P+L L+AR E ++ GL +GADDY+ KPF+ E+ ARV+ LLRR Sbjct: 61 GWEICQRFRK-DNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 T + VI+ +++ A ++ L LT EF LL + P +V +R+Q++D Sbjct: 120 R---ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIID 176 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW ++ +I LR K+ I+T RG+GY L+ Sbjct: 177 RVWGLDFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVLK 220 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + L ED+ G+ TL LQ EG+AVE + G L +A Q D+++LDV LP S Sbjct: 1 MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF++C++L +P+L LTAR E VD+++GL+ GADDY+ KPF E+ AR+ LLRR Sbjct: 61 GFDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRR 120 Query: 122 VK-KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + S + ++G ++ A+++ P+ L+ E+ LL L+ G +R+ L+ Sbjct: 121 APVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLL 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW + T RTVD H+ LR KL + T RG+GY L Sbjct: 181 TQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 19/241 (7%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK-QVPDVMILDVGLPDI 60 ++ + +V+D I + L +L+ EGF+V E G L + + P++++LD+ +P++ Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG+ELC Q+ LP+LFL+A+ + VD+++G EIGADDY+ KPF E+ AR+R LR Sbjct: 61 SGYELCSQIRRE-WDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLR 119 Query: 121 RVKK-------------FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLL 167 R ++ S+P V++ E+++ + + + L+ EF LL L Sbjct: 120 RYERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLA 179 Query: 168 KSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++ G V++R+Q+ D VW TV HIK LR KL + I T G GY Sbjct: 180 ENAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFI 235 Query: 228 G 228 G Sbjct: 236 G 236 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 7 WLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELC 66 LVED+ I++ + + L +EGF + G + ++ D+++LD+ LP ++G + Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 67 RQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFS 126 + + +PVL ++A+ +VD+ LGL GADDY+AKPFS E+ ARV+ +RR ++S Sbjct: 61 KIIREK-SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119 Query: 127 TPSP----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 P VIRI ++ + PL LT E+ LL +P +V++++Q+ S Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW + ++ H++ LR K+ I T G+GY L Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 5/230 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+D+ + L L ++GF V + ++ +M+LD+ LP Sbjct: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +CR+L + +P++ +TA+ EEVDR++GLEIGADDY+ KPF+PRE+ AR+R +LRR Sbjct: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 Query: 122 VKK-----FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 S VI G F+LN ++ D P+ LT EF +LK L+ P SR Sbjct: 123 QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSR 182 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +LM+ +R++D I LR + I T G+GY Sbjct: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V ++EDE IA++L L EG V V G L +Q D++ILD+ LPDI G Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR+L A LP++ LTAR E +R+ GL++GADDY+ KPFS E+ ARV + RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRA-G 136 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S P V+++ LN +++ + LT EF LL+ ++ P RV++RQ L+ VW Sbjct: 137 ISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVW 196 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V+ HI LR K+ + I T G+GY+LR Sbjct: 197 GFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTLR 237 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 2/224 (0%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 ET+ ++ED+ + L + EG+ V+ G L A P +++LD+ LP ++G+ Sbjct: 5 ETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGY 64 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+CR L +P++ LTA+ +E D +LGL++GADDYV KPFS +E+ ARV LRR + Sbjct: 65 EICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQR 124 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 K + V G + A + + L+ EF LL L+ + GR SR ++M +V Sbjct: 125 KQT--GTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTV 182 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 W R++D + LR K+ + + T R GY Sbjct: 183 WGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 2/226 (0%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +++D++ I+ + L EG+ V V G L+ + PD++ILD+ +PD+ Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C++L +P+L +T DR+ GLE GADDY+ KPF+ E+ ARV+ LLRR Sbjct: 61 GLEVCKRLRK-DAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRR 119 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + ++ Q + + EF LL +K P +V +R+ LMD Sbjct: 120 LDHKKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMD 179 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW ++ ++ LR+KL A + I+T RG GY LR Sbjct: 180 RVWGFDFRGESNVLEVYVGYLRSKLEAQ-NEPRLIHTVRGAGYVLR 224 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 129/230 (56%), Gaps = 5/230 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +++DE I D +L++EGF V+ E G + + PD+++LD+ LPD SG Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++LC+++ +PV+ ++A+ E +D++LGLE+GA+DY+ KPF RE+ AR++ +LRR Sbjct: 61 YDLCKEI-VKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRY 119 Query: 123 KKFSTP----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + + + G E+N + T + LT E+ +L+TL K P ++++R + Sbjct: 120 EHNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDE 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L++ VW R+VD I LR K+ + + T G GY L G Sbjct: 180 LLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGG 229 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M +T+ +V+DE I + + L+ G+ E + PD+++LD LP Sbjct: 1 MVGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGT 60 Query: 61 SGFELCRQLLAL--HPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 SG EL R+L +P++ LTA+ EE +++ GLE+GADDY+ KPFSPRE+ AR++ + Sbjct: 61 SGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 119 LRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 LRR + +P I +G L+ + +++ P + E+ LL+ + R ++R Q Sbjct: 121 LRRTGPGDSEAP-IEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+D VW +RTVD HI+ LR L + + + T RG GY Sbjct: 180 LLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRF 225 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 133/225 (59%), Gaps = 3/225 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +TV +VED G+ D + L++ G+ V V G L +AR PD+++LDV +P + G Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E R+ A +PV+FLTAR E+D++LGLE+GADDYV KPFS E+ ARVR LRR Sbjct: 82 LEFLRRFRATE-QVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS 140 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + P+ V+R G EL+ + LTR EF L+ L++PGRV++R +L++ Sbjct: 141 SEP-LPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQ 199 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + ++ +RT+D H++ LRAK+ A I T G+GY L Sbjct: 200 L-QEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLN 243 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 8/224 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +V+DE+ I + L L +EG+ V E G L ++ D++ILDV LP G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + + R++ + PV+ LTAR + D + G E+GADDY+ KPF+ + + ARV++LLR+ Sbjct: 66 WSILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKT 124 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 +I IG +N+ + +S + L E+ LL L+K+ SR++L++ Sbjct: 125 NNM--VESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNE 182 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW DRT+DTHIK LR K+ I T RG+GY L Sbjct: 183 VWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED + +A+ + L+ EGF V++ G LD A D +ILD+ LP +SG E Sbjct: 2 KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61 Query: 65 LCRQLL-ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 +CR L +P+L LTA +R+ GL +GADDY+ KPF RE+ ARVR L+RR + Sbjct: 62 ICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRNQ 121 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 ++ G +N ++S PL L+ EF LL+ +++PG V+SR+Q++D + Sbjct: 122 VVRQ--ETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKL 179 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 WE + VD ++ LR KL+ D I T +GY L+ Sbjct: 180 WESGFEPRSNIVDVYVLYLRKKLKPFGYDEK-IETVHNIGYRLK 222 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 127/230 (55%), Gaps = 3/230 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + +D++ + L+ + E F V + G L + ++ PD+M+LD+ +P I Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 GFE+CR+ +P++FL+A+ +E DRL+GL +GADDYV KPF RE+ ARV++ LR Sbjct: 61 DGFEVCRRARQFT-DIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLR 119 Query: 121 RVKKFS-TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 R + + I +++ ++ ++LT EF LL L +P RV+SR QL Sbjct: 120 RRRGEVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQL 179 Query: 180 MDSVWEDAQD-TYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 ++ A +RT+DTHI+ LR KL I T G+GY +G Sbjct: 180 LEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 3/226 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED+ +A + L ++ + V++ G + D+++LDV LP + G Sbjct: 2 RILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCRQL + +L LTA+ + D+++GL+ GADDYV KPF +E+ AR+R LLRR Sbjct: 62 LCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + PV+ G L+ ++++ D L LT EF LL L++ R++SR ++D +W Sbjct: 120 NTALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLW 179 Query: 185 EDA-QDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + T+ +HIK+LR KL+ + I T GMGY L+ L Sbjct: 180 SAEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKAL 225 Score = 83.6 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 10/109 (9%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + +VED+ I + L+ G ++ E D + PD++ILD +P I+G Sbjct: 497 KARIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYING 556 Query: 63 FELCRQLLALHPA--LPVLF----LTARSEEVDRLLGLEIGADDYVAKP 105 ELC+ + LPV+F L+A + V+++ IGADD V+KP Sbjct: 557 IELCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKP 601 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 3/227 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 E + +V+DE I + + +G+ V G ++ K D+++LD+ +P+I Sbjct: 1 MLEKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF++C+++ P++FL+AR E+D++ GL +G DDY+ KPFS +E+ ARV+ LRR Sbjct: 60 GFQVCQKIRDKVS-CPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118 Query: 122 VKKFS-TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 K+ I G L+ + ++ + + + T EF +++ L P +V+S++Q+ Sbjct: 119 EKRIPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIY 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + VW + TV HIK +RAK N L+ I T G+GY Sbjct: 179 EKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M + +++VEDE+ IA L L+ EGF E+ E G ++ + D+++LDV LP Sbjct: 1 MDKPVRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPG 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + G +C+++ + LP++ LTA+ E D++ GL+IGADDY+ KPF+ E+ AR+R L Sbjct: 61 MDGMTICKRVREVSS-LPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNAL 119 Query: 120 RRVKKFS---TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 R+ + +++ + + ++ + LT+ E+ LL+ ++++ V +R Sbjct: 120 RKHVPDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTR 179 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 Q+++ VW VD +I+ LRAKL I T RG+GY Sbjct: 180 DQILEKVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+D+ I + + +QE F V + + PD+++LD+ LPD SG + Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + ++L + +PV+FLTAR ++D +LGLE+GADDY+ KPF+PR + AR++ + RR + Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+++G E++ + + L R EF LLK ++++PG+V++RQ+++D VW Sbjct: 122 GPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVW 181 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 RTVD HI LR K+ + I T RG+GY L Sbjct: 182 GMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKL 218 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + ++EDE IA+ L + L+ G+ V G L + + PD+++LD+ LP +S Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60 Query: 62 GFELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G ++C+ + +P++ LTAR +EVDR+LG E+GADDYV KPFSPRE+ R++T+L Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR + + A + LT EF L +++ G+V SR+QL Sbjct: 121 RRNVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQL 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + + W + Y RTVDTH++ LR KL + T RG+GY ++ Sbjct: 181 LSNAWGYEFEGYSRTVDTHVRRLRKKLGPY---ADWLETVRGIGYRMK 225 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 120/229 (52%), Gaps = 5/229 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 R V +V+DE+ I D + L+ EGF VE G L + PD+++LDV L DI Sbjct: 77 SRVRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDID 136 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF +C +L +P LFLTAR D++ GL +G DDYV KPFS E+ ARVR +LRR Sbjct: 137 GFAVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRR 196 Query: 122 VKKFSTP---SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 T +R EL+ ++ + LT E+ LL+ LL + V +R Q Sbjct: 197 AGSPVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQ 256 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+D VW ++T+I LR K+ N + I+T RG+GY LR Sbjct: 257 LLDHVWGHDFSGEGGVLETYISYLRRKV--DNVEPPLIHTVRGVGYVLR 303 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 124/233 (53%), Gaps = 12/233 (5%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 T+ +VED +A+ LV L G+ V G L ++ PD++ILD LP + G Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 E+ R + PVL LTARSEE D ++GLE+GADDY+ KPF RE+ ARVR LLRR + Sbjct: 66 EVLRTIRQTKS-TPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQ 124 Query: 124 K--------FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + + V+R G L+ ++ L LT EF +L LL++PGR +S Sbjct: 125 RIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFS 184 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 R L+D++W + DR+VD + LR KL I T G+GY L+ Sbjct: 185 RNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQA 234 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 3/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +V+DE I+D + L+ +GF VE + G L+ A PD ILDV +P + GF Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR-VK 123 L +L P LFLTA+ DR+ GL IGADDYV KPFS EV R+R +LRR K Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 124 KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 S S +I L++ +++ + L+ EF LL+ L+ + V S+ +++D V Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 W V++++ LR K+ + I+T RG+GY LR Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKI--DTKEPRLIHTVRGVGYVLR 252 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 130/230 (56%), Gaps = 6/230 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +T+ ++ED+ I + + L ++ + G L + PD++ILD+ LPDI G Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+CR + P+ +TAR+EE+DR++GLE+GADDY+ KPFS RE+ RV RR Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 123 KKFS------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 K + S I G +++ +++ D + ++R EF +L+ + SPG+V+SR Sbjct: 121 DKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + ++++VW D ++R +D+H+K +R+KL + I T G+GY Sbjct: 181 EMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRF 230 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 5/228 (2%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 +T+ +++DE I + L L+ GFA G+ L D++I D+ +P + G+ Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR-- 121 EL +++ +P LFL+A+S+++D+++GL++GADDYV KPF+P EV +RV+ L RR Sbjct: 72 ELLKKIR-HISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMD 130 Query: 122 --VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 K +I+IG L+ + ++ +T YEF +L L+K GRV+++ + Sbjct: 131 VFSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASI 190 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + VW + + +I LR K+ + T RG+GY Sbjct: 191 YEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFE 238 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 139/228 (60%), Gaps = 3/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +T++++ED+ IA + + LQ G+A+ ++ +L A +Q P + +LD+ +P Sbjct: 1 MSQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGD 60 Query: 62 GFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G ++CR+L A ++P++F+TAR+ E DR+LGLE+GADDY+ KPF+PRE+ ARV+ +L Sbjct: 61 GLDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR ++ STPS +I ++ A Q+ T EF LL L + PGRV+SR L Sbjct: 121 RRFERPSTPS-LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +D+VW DA+ R+VD +++ +R K+ + + + T RG GY Sbjct: 180 LDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 8/234 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M +E + +V+DE+ I + L L+++G+ V E G L+ PD+++LD+ LP I Sbjct: 1 MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60 Query: 61 SGFELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G E+ R + P+L L+A+ EE D + GLE+GADDY+ KPFSP+ + AR+R++ Sbjct: 61 DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120 Query: 119 LRRVKKFSTPSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 LRR + + P I + ++ + + LT EF +L L PG V++ Sbjct: 121 LRRQQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 R Q++D + + DR+VD I LR KL I T RG+GY R + Sbjct: 181 RWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFREI 231 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED+ IA TL L + +AVEV G D D+++LD+ LP + G Sbjct: 2 KILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC+++ + +P+L LT R D+ +GL+ GADDYV KP E+ ARVR LLRR Sbjct: 62 LCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGGV 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S P V+ G L+ + ++++ L+LT E+ LL+ L+++ RV+S ++D +W Sbjct: 122 TSQP--VLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + V THIK LR KL+A + T G+GY L+ Sbjct: 180 SYEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLK 222 Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 6/126 (4%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+D+ + L +L G + K PD++ILD+ +P +S Sbjct: 380 NKIKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMS 439 Query: 62 GFELCRQLLA--LHPALPVLFLTARS--EEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 G ELC+ + + +P+LFLT S E V+++ +GADD+V+KP E+ R+ Sbjct: 440 GIELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRILN 497 Query: 118 LLRRVK 123 L RV+ Sbjct: 498 RLERVR 503 Score = 73.2 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 V + +D+ L +L Q G+ V + G + +A Q PDV++LD+ +P ++ Sbjct: 1072 NSPLVLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMN 1131 Query: 62 GFELCRQLLA--LHPALPVLF 80 G+E L +P++ Sbjct: 1132 GWETMAGLKKCSDTKDIPIVI 1152 Score = 45.5 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +R + ++ED+ +AD L + + + + G + ++K PD++ILD+ LP+ Sbjct: 1202 KRLKILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEAD 1261 Query: 62 GFELCRQLLALHP--ALPVLFLTARS-EEVDR 90 GF + L ++PV+ +A+ ++ +R Sbjct: 1262 GFTVVDWLKQHDQLFSIPVVVYSAKDLDDSER 1293 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ + +V+D+ I + LQ+EG+ E + ++ PD+ +LD+ LP + Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G+E CR++ A P++ ++AR EEVD++LGLE+G+DDY+ KPFSPRE+ ARV L+ Sbjct: 61 NGYEFCRRIRA-GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQ 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R K+ + + I L++ + F + +T EF +L L + P R +SR +L+ Sbjct: 120 RWKQMKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELL 179 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +W DR VD I+ +R KL I + T G GY LR L Sbjct: 180 SLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRLRTL 223 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 4/226 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 T+ +V+D+Q I + L L+ + F V+ ++ M+LD+ +P +GF Sbjct: 5 NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGF 64 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ELCR++ A +P+LFL+ARS++VD++ GL +G DDY+ K SP E+ ARV+ +LRR Sbjct: 65 ELCRRIRAE-SPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSA 123 Query: 124 -KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + V+ G LN ++ + LT EF LL+ + P V++ QL+ Sbjct: 124 TRRPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAK 183 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 W T+ H+ LR K+ A + G+GY G Sbjct: 184 FW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 2/227 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + +V+DE I D L L+ G+ V G + + PD++I+DV LPD+ Sbjct: 25 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 84 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SGF ++L PV+FL+AR D++ GL +G DDYV KPFS E+ ARV +LR Sbjct: 85 SGFAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILR 144 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R K IR+G +++ + ++ + L+ EF LL+ + +P RV S+ Q++ Sbjct: 145 RT-KIDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQIL 203 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW+ D V+++I +R KL A + + + I+T RG GY +R Sbjct: 204 GHVWDYDFDGDSSIVESYISYIRRKLAAYSSE-TIIHTKRGFGYIMR 249 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 126/231 (54%), Gaps = 4/231 (1%) Query: 1 MQRET-VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+R + + +DE+ IAD L L+Q GF V + G VL + P ++ILD+ LPD Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 I G E+C + A A+P+L LTA+ + DRL GL+IGADDYV KPF+P EV ARV+ +L Sbjct: 61 IPGEEVCMAVRAR-SAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAIL 119 Query: 120 RRVKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 RR + + G ++ + + LT E+ LL L + P RV+SR+ Sbjct: 120 RRTMLDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSRE 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +L++ V+ RT+D H+K LRAK+ I T GMGY G Sbjct: 180 ELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGG 230 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 6/232 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ + + LVED++ I+ + L++EGF V G+ + K D+++LD+ LP + Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G+++C+++ P++ LTA+ + +++ GL IGADDYV KPF E+ AR+ +LR Sbjct: 61 DGYQVCQKIRET-SYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLR 119 Query: 121 RVKKFSTP-----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R+++ + + + A I + + + R E LLK L+ P +V+ Sbjct: 120 RIEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFK 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R++L++ +W + DR +D +IK LR +L++ I T G+GY Sbjct: 180 REELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFE 231 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V LVEDE+ I+D +V L+++G+ VE+ E G A Q DV++LD+ LP G Sbjct: 18 KVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGLS 77 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + + L +PV+ +TAR E +RL GL +GADDY+ KPF E+ AR++ L RR Sbjct: 78 ILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSSG 137 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 S ++++G +N ++ + LT EF LL+ L++SPGRV +R Q+++ VW Sbjct: 138 KSL--SMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVW 195 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 D VD ++ LR K+ D+ I T RG GY +R Sbjct: 196 GYDFDPSTNVVDVCVQRLRKKV-DAGHDVHLIETVRGAGYRMR 237 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + L+ED+ + + L Q+ +AV+ G L+ A+ DV++LD+ LP + G Sbjct: 2 KILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGIT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR+L + P+L LTA++ D ++GLE GADDY+ KPF E+ AR++ L RR ++ Sbjct: 62 VCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQQ 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+R + LN+ ++++ L LT E+ LL+ L+ P RV+SRQ ++D +W Sbjct: 122 V--LPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + T+ +HIK LR KL+A+ + I T G GY L Sbjct: 180 TLDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221 Score = 87.1 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 2/110 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ L++D+ + L L GF V PD++ILD+ +P SG Sbjct: 509 TLMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLN 568 Query: 65 LCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVC 112 LC+ + ++P+LFL+ + L GAD Y+ K + E+ Sbjct: 569 LCQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 5/228 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + ++ED+ IA + + L+ EGF E G L AR+ PD ++LD+ LP I Sbjct: 1 MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60 Query: 62 GFELCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G + R + A PV+ +TA+ EE DR++GLE+GADDY+ KPF P+E+ ARV+ +L Sbjct: 61 GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR + + + IG ++ + ++ P LT EF LL L++ GRV R+ L Sbjct: 121 RRRETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETL 180 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++VW D + DRTVD HI+ LR K+ + T + +GY R Sbjct: 181 LNTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFR 225 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 120/222 (54%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 TV LVED+ IA L L EG+ V V E G L AR D++I+DV LP ++GFE Sbjct: 18 TVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFE 77 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 L R L LPV+ L+AR E+D+++GLE+GA+DY+ KPFS E+ ARV+ +LRR Sbjct: 78 LLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAI 137 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 +R G +N ++ D + LT EF +L L ++ GRV SR+Q+ VW Sbjct: 138 ARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVW 197 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 RT+D I LR KL + T RG+GY Sbjct: 198 GPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRF 239 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 116/238 (48%), Gaps = 10/238 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQ+ + +VEDE+ I L + E + VE G + K P +++LDV LP Sbjct: 1 MQQHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKK 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SGFE+CR + HP ++ LTA++EE ++ GL++GADDYV KPFS E+ ARV+ LR Sbjct: 61 SGFEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLR 120 Query: 121 RVKKFSTPSPV--------IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGR 172 R+ + +P I L+ + PL L+ EF +LK + G Sbjct: 121 RIDLQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGE 180 Query: 173 VWSRQQLMDSVWED--AQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 V R+ L+ +W RT+D HI LR KL + I + RG GY Sbjct: 181 VVLREDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 100/219 (45%), Positives = 132/219 (60%), Gaps = 5/219 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V LVEDE IAD + L ++GF V + G L AR+ P V +LD+ LP + G E+ Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 CR+L PV+FLTAR +EVDR++GLE+GADDYV KPFSPRE+ ARVR +LRRV Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130 Query: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185 P I +G L+ ++ P+ LT EF LL L+ PGRV++R++L+ VW Sbjct: 131 PPGRPRI-VGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWG 189 Query: 186 DAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 A RTVD H+ +RAKL + I THRG+GY Sbjct: 190 YAVPAGTRTVDVHVAQVRAKLGPES----VIRTHRGVGY 224 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + ++EDE ++ L Y L EG+ V V + G + A +Q D+++LD+ LP ++ Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE+ +L + PV+ LTA++ E + + GL+ GADDY+ KPF E+ ARV +LRR Sbjct: 61 GFEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRR 120 Query: 122 V-------KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVW 174 K + I +G + +++ P+ L EF +L L + PG V Sbjct: 121 STGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVM 180 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +R LM++VW RTVD H+ +LR KL I++ RG+GY L Sbjct: 181 TRDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQS-VHIDSIRGVGYKL 231 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 4/229 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 + +++V+DE I + + L+ G+AV V G+ ++ K PD++ILD+ LPDI G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ++C L +P++ LT +++E D L GL+IGADDY+ KPFSPR++ ARV+ LLRR + Sbjct: 70 DICEMLRKR-SKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTE 128 Query: 124 KFSTPSPVI---RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + +N+ ++ + LT E+ +L T+++ PG++++R++L+ Sbjct: 129 DELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELI 188 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 YDRT+D+HIK LR K+ + I T RG+GY + Sbjct: 189 IVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKFGSV 237 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVEDE +A L +L++ +AV+V G D A D+ ILD+ LP +SG + Sbjct: 2 RILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGLD 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R + PVL LTA+ DR+ GL+ GADDY+ KPF +E+ ARVR L RR + Sbjct: 62 ILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTGQ 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 I G F L+ ++ PLALT EF LL+ +++P +V S++ ++D VW Sbjct: 122 I-AGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 D V+ ++ LR K+ S I T RG+GY Sbjct: 181 GPDADVIGNAVENYVHFLRKKI-DEPDLPSYITTVRGVGYMF 221 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 134/227 (59%), Gaps = 7/227 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 E + LV+DE+ I D + Y L++EG+ VE G LDK P +++LD+ LP I+ Sbjct: 1 MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+++C++L + ++ LTA+ + VD++LGLE+GADDY+ KPF RE+ AR+++L+RR Sbjct: 61 GYDVCKRL--EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRR 118 Query: 122 VKK---FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + K S VI IG +N+ +S ++ L T EF LL LL + G V+SR+Q Sbjct: 119 LDKTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQ 178 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 +++ +W RTVDTHI+ +R KL I T G+GY Sbjct: 179 ILNIIWNMDYAGGTRTVDTHIQRIRKKLGNN--YQDLIQTVYGIGYK 223 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 7/230 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 V ++EDE +A L Y L QEG+ V + G L A ++ D++ILD+ LP ++ Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLN 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE+ +L P++ LTAR+ E + + GL+ GADDY+ KPF E+ ARV +LRR Sbjct: 61 GFEILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRR 120 Query: 122 VKKF-----STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 ++ T VI +G + ++ + L EF +L L++ PG V +R Sbjct: 121 TQQDDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 LM+ VW RTVD H+ +LR KL I + RG+GY L Sbjct: 181 DDLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKL 228 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 2/225 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED++ +A+ L +L +AVE+ G + D+++ DV LP + G Sbjct: 2 RILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGVG 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC+QL + +P+L LT + DR +GL+ GADDYV KPF P E+ ARVR LLRR Sbjct: 62 LCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + P+++ + +L+ A ++ + D L LT E+ L++ ++++ RV+S +++ +W Sbjct: 120 EAIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 + V THIK LR KL+A I T G+GY L+ L Sbjct: 180 TYEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPL 224 Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 14/153 (9%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+D+ I +T+ + + G V + + PD+++LDV +P+I Sbjct: 486 KEARIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIG 545 Query: 62 GFELCRQLLA--LHPALPVLFLTARSE--EVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 G +LCR + LP++FLTA +E V+++ GADD+++KP E+ R+ Sbjct: 546 GIDLCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYA--SGADDFISKPIVGPELVVRILN 603 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFD 150 L R + S ++ A +S + Sbjct: 604 RLERTRLQRRLS--------TIDPLARVLSRHE 628 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 V +VEDE+ + D +V +++ G + G+ L + D+MILDV +P + G Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F +C+ + +P++ LTA+ E D+L G E GADDY+ KPFSP+ + A+ LLRR Sbjct: 80 FSVCKLAREM-SNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRS 138 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 P + +G + + ++ + LT E+ LL L+ +PG++++R QL++ Sbjct: 139 SP--APLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNR 196 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +W + RTVDTHIKTLR KL I T GY Sbjct: 197 IWGYDFEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKFE 238 >UniRef50_P08368 Transcriptional regulatory protein creB n=64 Tax=Proteobacteria RepID=CREB_ECOLI Length = 229 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI Sbjct: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR Sbjct: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM Sbjct: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL Sbjct: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 5/231 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + ++ED+ IA+ + L +E ++V G L+ +K D++ILD+ LP+I Sbjct: 1 MNGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEID 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GF +C+ + L +P+L L+A+ +EVD++ GL++GADDY+ KPFS E+ ARV ++R Sbjct: 61 GFTVCKNIR-LLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKR 119 Query: 122 VKKFSTPSPVIRI----GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 K ++ + I + + ++ D + LT EF LL L ++ +V++++ Sbjct: 120 YKGYNKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKK 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +L ++VW + T+ H+K LR KL+ + I T G GY G Sbjct: 180 ELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIG 230 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 99/224 (44%), Positives = 133/224 (59%), Gaps = 4/224 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 QR V +VEDE IAD + L ++GF V + G+ L AR+ P +LD+ LP ++ Sbjct: 7 QRGLVLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLA 66 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CR+L PVLFLTAR +EVDR++GLE+GADDYV KPFSPRE+ ARVR +LRR Sbjct: 67 GTEICRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRR 126 Query: 122 VKKFSTP-SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 V +G L+ ++ P+ LT EF LL L+ PGRV++R +L+ Sbjct: 127 TVGVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELL 186 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 +VW A + RTVD H+ +RAKL I THRG+GY Sbjct: 187 AAVWGYAAHSSTRTVDVHVAQVRAKLGGAAG---VIRTHRGVGY 227 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 11/235 (4%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + + +D I + L +L EG+ V + G VL D+++LD+ +P+++ Sbjct: 1 MQTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMN 59 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G++ C +L +P+LFLTA+ + D+ LG GADDY+AKPFS E+ ARV+ LLRR Sbjct: 60 GYQTCLKLRET-SNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRR 118 Query: 122 VKKFSTPSPV--------IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 + + + + L + LT EF +L TL+K+P ++ Sbjct: 119 YQVYKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQI 178 Query: 174 WSRQQLMDSVWEDAQDTY-DRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +S +QL + W + + T+ HI+ LR K+ + I T G GY Sbjct: 179 FSAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +V+DEQ + + + + L++ G+ V + G L+ AR + PD+++LD+ +P + G Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 63 FELCRQLLAL--HPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 + +CR L +P++ L+ARS+E+D++LGLE+GADDY+ KPFSPRE+ ARV LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 121 RVKKFS-----TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R KK +I G +++ I L EF LL L PG+ +S Sbjct: 121 RDKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFS 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R L+ WE RTVD HI+ +R KL +N + I T RG+GY Sbjct: 181 RYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 +T+ +++D++ + DT+V ML+QEGF G +KA PD++++D+ LP +SG Sbjct: 12 MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSG 71 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+C+QL A A P++ L+A +E+D++L LEIGADDYV KPF RE+ AR+R +LRR Sbjct: 72 TEICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRA 131 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 + V+ E++ + L LT E+ LL L +P R +R +++S Sbjct: 132 S--TDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNS 189 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 VW RTVD H+ LR KL T G+GY Sbjct: 190 VWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRF 233 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQV-PDVMILDVGLPDISGF 63 + +V+D++ I L + EG+ G + K ++ILD+ +P+++G Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 ++ RQ+ +P+L L+A++ ++D++ GL GADDYV KPF+P EV ARV++LLRR + Sbjct: 62 DVIRQVRKDSS-IPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 120 Query: 124 KF--STPSPVIRIGHFELNEPAAQI-SWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 + V+ +G +N+ + ++ + P+ LT EF +L L P RV+S + Sbjct: 121 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDIF 180 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + VW+ +TV H+ LR K+ A I T G+GY + Sbjct: 181 ERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 4/228 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 Q+ V +V+D+ + L L+ G+ V G ++++ + P ++ILD+ +P Sbjct: 3 QQYPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKD 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+ R L H +PV+ LTA+ E+ DR++GLE+GADDY++KPF+PRE+ AR++ +LRR Sbjct: 63 GLEVLRDLRP-HSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRR 121 Query: 122 VKKFSTPSP---VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 K +P I + L+ ++ L L+ EF LLK L+ +PGR +R Sbjct: 122 AKGPENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDD 181 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 LM SVW + +DR++D HI LRA + S I T G GY Sbjct: 182 LMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 126/232 (54%), Gaps = 9/232 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +VEDE IA+ + L G+ VE + + Q+P+++ILD LP S Sbjct: 1 MTHRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKS 60 Query: 62 GFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G + ++L ALP+L LTA+SEE D++LGL+ GADDYV KPFSP+E+ ARVR +L Sbjct: 61 GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQIS-----WFDTPLALTRYEFLLLKTLLKSPGRVW 174 RR P + +G +L+ + ++ +AL EF LL+ + +P RV Sbjct: 121 RRQMPIEDTGP-LTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVH 179 Query: 175 SRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 SR L+D VW +RTVD HIK LRA L + D I T RG GY + Sbjct: 180 SRASLLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCD-RYIETVRGSGYRI 230 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 308 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 5/227 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + L+ED+ + L Y L++EGF++ G ++ R+ PD+++LD+ LPD G Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 63 FELCRQLLALHP--ALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 ++C+ + A+PV+FLTAR+ E DR++GLE+GA+DYV KPF RE+ AR++ R Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 +TP+ ++ G EL+ + Q+ PLALT EF LL+ L+ PG V+SR+QL+ Sbjct: 126 ---NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLL 182 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++VW + DR VD ++ LR K+ I++ RG GY+ Sbjct: 183 NAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFE 229 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 308 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 135/231 (58%), Gaps = 7/231 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M E + +V+DE+ I + + + L++EG+ V G L A++++PD+++LD+ LP I Sbjct: 1 MPNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGI 60 Query: 61 SGFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 GFE+ R++ A+ +P++ LTA+ EE D + GLEIGA+DY++KPFSPRE+ AR+R + Sbjct: 61 DGFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGI 120 Query: 119 LRRVKKFSTPSPVIRI--GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 LRR + P+ + G ++ ++ L LT EF +L L+ G V++R Sbjct: 121 LRRRTRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTR 180 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 Q++D+V + +R+VD I LR KL P I T RG+GY R Sbjct: 181 GQIVDAVHGENYAVTERSVDVTIAGLRKKL---GPCADFIETVRGVGYRFR 228 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 120/226 (53%), Gaps = 1/226 (0%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +VEDE GIA L L EG+ VEV G+ + R+ D+++LDV LP G Sbjct: 1 MIRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+CR+L P+L LTA++ E ++++GLEIGADDYV KPF +E+ AR++ LLRR Sbjct: 61 LEVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRA 120 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 T G E++ ++ + LT EF LL +++ GRV SR QL+ + Sbjct: 121 SG-DTDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAA 179 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 W T R VD HI LR K+ + + RG+GY G Sbjct: 180 TWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRFDG 225 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +T+ +V+D+ I D + +++EG V + G+ L+ +Q D++ILDV + + Sbjct: 1 MPKTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYN 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR- 120 GFE+C + +LP++ L+A+ + VD+ LG ++GADDY+ KPF P E+ R + LR Sbjct: 61 GFEVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRN 120 Query: 121 RVKKFSTPSP-------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 R + + P VI +G ++ Q++ + L LT E+ +L + + P V Sbjct: 121 RSPQEAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVV 180 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 ++RQQ++DSVW V I+ LR K+ A I T G+GY + Sbjct: 181 FTRQQILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRI 233 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 9/236 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M R + +V+DE+ I + + L + GF + GL ++ Q PD+++LD+ LPDI Sbjct: 1 MNRTKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDI 60 Query: 61 SGFELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTL 118 G E+CR++ P++ LTA+SEE D+++GL +GADDY+ KPF RE+ ARVRT+ Sbjct: 61 DGLEVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTV 120 Query: 119 LRR-------VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPG 171 LRR + +T + +I++ ++ + D + T EF +LK L +S Sbjct: 121 LRRVMDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLE 180 Query: 172 RVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V SR L++ V + R VD HI+ +R KL N I T RG+GY ++ Sbjct: 181 HVLSRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKMK 236 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 109/239 (45%), Positives = 149/239 (62%), Gaps = 11/239 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M ++ + VEDE I L Y L++EG+ V G L +Q D +ILDVGLPD Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +GFE+C+QL + P+LFLTAR +E+DR++GLEIGADDY KPFS RE+ AR++ + R Sbjct: 62 NGFEVCKQLRQKY-QTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWR 120 Query: 121 R----VKKFSTPSPV------IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 R + S+ + ++ + N + QI + L LTRYE+ LL L++ P Sbjct: 121 RMEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHP 180 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL 229 +V+SRQQLMD +WE + + +RTVDTHIK+LR KL+ I PD PI THRG GYSL L Sbjct: 181 EKVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLVKL 239 >UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0H8_9GAMM Length = 241 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 121/237 (51%), Gaps = 11/237 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ E + +VED++ I + L V+ L K K +++LD+ LP + Sbjct: 1 MRHEKLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G LCR++ +P V+ LTA S ++DR++GLE+GADDY+ KPF RE+ ARV+T LR Sbjct: 61 DGLSLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLR 120 Query: 121 -RVK---------KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSP 170 R + +++G + + Q+ + + LT EF LL + P Sbjct: 121 HRAQLLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHP 180 Query: 171 GRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V+SRQQL+D VW Y+ TV++HI LRAKL I T G+GY L Sbjct: 181 NHVFSRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLELHQSTP-IIETVWGVGYKLN 236 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 17/237 (7%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + + +D+Q I + L L+ EG+ V G L + D+++LD+ +P I G+++ Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125 R++ ALPV+ ++A+ ++ D+++GL++GADDY+ KPF+P E ARVR+ LRR Sbjct: 71 LRRVRET-SALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGM 129 Query: 126 STPSP--------------VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPG 171 + V+ + L+ A + D PL LT EF +L + PG Sbjct: 130 PAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPG 189 Query: 172 RVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 RV+++QQ+ + W + V I LRAKL I T RG+GY + Sbjct: 190 RVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRMEA 244 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V LVEDEQ IAD + L+ + F V G A DV+ILD+ LP G + Sbjct: 2 NVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGLD 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + R L P++ LTAR+E DR+ GL++GADDY+AKPF E+ AR++ LLRR Sbjct: 62 ILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHGG 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 V+ +G +L+ I+ + LT EF LL+ L++SP +V +R QL++ VW Sbjct: 122 TQQ--HVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAK---LRAINPDLSPINTHRGMGYSL 226 D VD IK +R+K L + I + RG GY L Sbjct: 180 GYDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 4/229 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD- 59 M+R+T+ +V+DE + + L G+ V+ G ++ D++ILD+ LP Sbjct: 1 MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 ++GFE+C+++ +P++ LT R+ E DR+ G + GADDYV KPFS E+ RV+ +L Sbjct: 61 LNGFEVCKRIREF-SDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAIL 119 Query: 120 RRVKKFST--PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 RR PV + G +N ++ + LT E+ +L L + G+V + + Sbjct: 120 RRSHPSEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHE 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 L+ VW + +I +LR K+ D I G+GY L Sbjct: 180 DLLTRVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYL 228 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED+ + L L + V+V + G D++ILD+ LP++ G Sbjct: 2 KILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC++ A +P+L LTA+ ++ GL+ GADDYV KPF P E+ AR+R LLRR Sbjct: 62 LCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + P P++ G LN ++++ PL LT E+ LL+ LL++ V+S ++L+D +W Sbjct: 120 SNNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + TV +H++ LR KL A I T G GY L+ Sbjct: 180 SSEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKA 223 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 5/126 (3%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 V +++D+Q TL +L+ GF V + PD ++LDV +P I+GF Sbjct: 526 NKVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGF 585 Query: 64 ELCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 ELC+ L + LPVLFL+ ++ + +G DDY+ KP E+ R+ LRR Sbjct: 586 ELCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642 Query: 122 VKKFST 127 +++ Sbjct: 643 LQRVRA 648 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 11/225 (4%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +VEDEQ +A L L E + V+ G LDKA D++ILD+ LP I+G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+CR++ P++ +TA+S+ D++ GL+ GADDY+ KPF E+ AR+R +LRR Sbjct: 61 LEICRKIRQQQS-TPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR- 118 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 +I + L +++ + LT+ E+ LL L ++ V R+Q+++ Sbjct: 119 ---QPQKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNH 170 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW + VD +I+ LR KL+ + D I T RG+GY +R Sbjct: 171 VWGYNSEVETNVVDVYIRYLRNKLKPYDRD-KMIETVRGVGYVIR 214 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63 TV +VED+ I L L G+ V G + +A + PD+++LDV LPD GF Sbjct: 11 HTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGF 70 Query: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123 L R+L A PVLFLTAR+ DR+ GL G DDYV KPF +EV RVR +LRR Sbjct: 71 RLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAG 130 Query: 124 KFSTPSPV---IRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 ++ +PV +R L+E ++ +PL L+ EF LL L P RV + +++ Sbjct: 131 APASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEIL 190 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW R VDT++K LR KL + ++T RG+GY LR Sbjct: 191 QRVWRYDFSGDTRIVDTYVKNLRRKL-DHGGAPALLHTVRGVGYCLR 236 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 132/224 (58%), Gaps = 3/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + L+ED++ +A L+ L Q+ +AVE+ E G + A+ D+++ DV LP + G Sbjct: 2 RILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGIT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC++L + + P+L +TA+ E DR+ GL+ GADDY+ KP + RE+ ARVR LLRR Sbjct: 62 LCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + PV+ +G L+ ++++ + L LT E+ LL+ LL++P RV+SR +++ +W Sbjct: 120 DTPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + TV +HIK LR KL+ + + I G+GY L+ Sbjct: 180 TFDDPPQEETVKSHIKGLRHKLKVVGA-VDWIENVYGLGYRLKS 222 Score = 106 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + V +V+D+ I L ML+ G + + L + + PD++ILDV +P ISG Sbjct: 499 KVNVLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISG 558 Query: 63 FELCRQLLA--LHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 ELC+ + LP++FLTA E G DDYV KP E+ AR+ L Sbjct: 559 IELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLE 618 Query: 121 RVK 123 R + Sbjct: 619 RSR 621 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + ++EDE+ ++D + L++EG+ V E GL ++ RK+ D++ILD+ LPDI G Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+C+ L + + + LTA+S D++ GL IGAD+Y+ KP SPRE+ ARV L RRV Sbjct: 61 EEVCKILRKI-SDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRV 119 Query: 123 KKFSTPSPVIRIGH--FELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 VI ++ + + LT EF +L L + G+V++R+ ++ Sbjct: 120 G--CKKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAII 177 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + D DR++D HIK LR K+ I T +GY Sbjct: 178 ERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+DE I + Y L + G+ V G L+ AR++ P +++LD+ LP +SGF+ Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69 Query: 65 LCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 + QL A + VL LTAR EE DR+ GL +GADDY+ KPFSP E+ RV +LRR Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129 Query: 123 KKFST-PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + + IG ++ A + + LT EF LL TL + GRV R L++ Sbjct: 130 GSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLLE 189 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +VWE A D RTVD H++ LR+KL A I T RG GY LR Sbjct: 190 TVWEAAPDIQTRTVDMHVQRLRSKLGAAG---ELIETVRGFGYRLRA 233 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + V ++EDE+ IA + L EG+A EV G+ L K R+ PD++ILD+ LP + G Sbjct: 4 KPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDG 63 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 E+ R++ P++ LTA+ D++ GL+ GADDY+ KPFS E+ ARVR LRRV Sbjct: 64 LEVARRIRKT-SNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV 122 Query: 123 KKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 T +R+ +N +I + L+ EF LL+ L ++PG+V+SR ++ + Sbjct: 123 NPAVTGE--VRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEK 180 Query: 183 VWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 VW VD +I LR KL + I+T RG+GY LR Sbjct: 181 VW-PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLR 223 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPD--VMILDVGLPDISG 62 + +V+D++ I + L ++ EG+ G + K PD +MILD+ +P++SG Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++ +++ +P++ ++A++ ++D++ GL GADDYV KPF+P EV ARV++LLRR Sbjct: 61 MDVVKEVRK-DSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 123 KKF--STPSPVIRIGHFELNEPAAQIS-WFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + ++ V+ +G + + + +++ + LT EF +L L P RV+S ++ Sbjct: 120 QNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + VW+ +TV H+ LR K+ I T G+GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVEA 228 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + LVED+Q +A+ + L+ + + VE+ G L+ A D+++LD+ LP + G + Sbjct: 2 KLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGIQ 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 C+Q P+L +T + + ++ L+ GADDY+ KPF+ +E+ ARVR LLRR Sbjct: 62 FCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGGL 121 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 STP +++ G LN + Q+++ + LT E+ +L+ L++ R++S+ L++ +W Sbjct: 122 SSTP--LLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + + V T IK+LR KL+ + I T G+GY L Sbjct: 180 SFDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLN 222 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +V+D+ + + + L+ GF++ + E D + PD++ILDV +P+ISG E Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 65 LCRQLLALH--PALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARV 115 LC+ + LP+LFL+ E G + GADDY+ KP E+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 45.5 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + + +V+++ + ++V + G +V + + PDV++LD+G PD Sbjct: 371 KNHHLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDRE 430 Query: 62 G--FELCRQLLALHPALP 77 EL + + L P +P Sbjct: 431 EICLELLKDIRQLIPPIP 448 >UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synechococcus RepID=B1XLL2_SYNP2 Length = 249 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 5/230 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + +++D+ IA+ + L+ G+ V E G+ A + PD+++LD+ LP + G Sbjct: 1 MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDG 60 Query: 63 FELCRQLL--ALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 F +C+++ +P+L LTA + D++ G GADDY+ KPF E+ RVR LLR Sbjct: 61 FTVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLR 120 Query: 121 RVKKFSTPS---PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 R + + ++ G L + WFD + LT EF LL LL+ G+ S Sbjct: 121 RSDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPS 180 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++ VW T+ H++ LR KL I T G GY L Sbjct: 181 EILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLE 230 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + T+ + +DEQ + D L ++ EG+ G +LD ++ D+++LDV +P++ Sbjct: 4 NQYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMD 63 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E R+L +PV+ +TA+S+E DR+ GL GADDY+ KPFSP+E+ AR+ +RR Sbjct: 64 GMEALRELR-TSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRR 122 Query: 122 VKKFSTPS--PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 ++ ++ ++N + ++ ++LTR EF LL +K P +V++R+QL Sbjct: 123 NYGYNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQL 182 Query: 180 MDSVWEDAQ-DTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +D VW RTVDTH+KT+R K+ + T G+GY L Sbjct: 183 LDHVWGVNYTTGGHRTVDTHMKTMRFKMGSGG---DYFRTVYGVGYVLE 228 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 1/223 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 T+ ++D+ I L L+ G+ +E + ++ PD++ILD+ LPD G E Sbjct: 74 TLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLE 133 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 C QL +LHP LPV+ LTAR + D+++GLEIGADDYV KPF E+ AR++ LR Sbjct: 134 FCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANPG 193 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 T +++ G+ E++ + + LT EF LL L+++ + +R+++ +W Sbjct: 194 AGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRLW 253 Query: 185 -EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + ++ R +D HI+ LR K+ I T G GY Sbjct: 254 RDSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRF 296 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VED++ A L +L + +AVEV G+ + + D+++LDV LP + G Sbjct: 2 KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCRQ+ + +P+L LT ++ +GL+ GADDYV KPF E+ ARVR LLRR Sbjct: 62 LCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 +T P++ G+ +L+ + ++ + L+LT E+ LL+ L+ RV+S +++ +W Sbjct: 120 GTTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + V THIK LR KLR + T G+GY L+ Sbjct: 180 SYEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKA 223 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 6/136 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V V+D+ I L +L G V + + R PD++ILDV +P +G E Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 65 LCRQLLA--LHPALPVLFLTA-RSEEV-DRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 LC+ + LP+LFLT + E+ +++ +GADD+V+KP E+ R+ L Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRIINRLE 499 Query: 121 RVKKFSTPSPVIRIGH 136 RVK S IG Sbjct: 500 RVKLLHKVSESRGIGE 515 Score = 85.6 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 V + +D+ I L +L+Q G+ V G + A Q PDV++LD+ +P ++G+E Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 66 CRQLLA--LHPALPVLF 80 L +P++ Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 49.3 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 12/124 (9%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 R + +VED+ +A+ V + ++ + G + +++ PD++ILD+ LP+ G Sbjct: 1500 RVRILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDG 1559 Query: 63 FELCRQLLALHP--ALPVLFLTARS-EEVDRLLGLEIGADDYV------AKPFSPR--EV 111 F + L +PV+ +A+ +E +R L++G +++ K F R E+ Sbjct: 1560 FAVVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIEL 1618 Query: 112 CARV 115 R+ Sbjct: 1619 LQRI 1622 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V +++D++ + L L++ GF V L + PD++ILDV LPD G Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 +CR++ A +P++ LTAR + DR++GLE+GADDY+ KPF PRE+ AR++ +LRR Sbjct: 77 VCREVRA-DSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR--G 133 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 + +R+G E+N + L LT EF LL L ++ GRV SR +++D Sbjct: 134 TRDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTR 193 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D YDR++D + LR KL + I T RG+GYS G Sbjct: 194 GIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIG 237 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 128/231 (55%), Gaps = 11/231 (4%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 T+ +VEDE+ + L L +EGF + G + D+ ++DV +P + G Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F+ ++L LPV+FLTARS+E DR+ GL +G DDY++KPFS E+ AR++ +LRR Sbjct: 61 FDFVKKLRET-STLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRT 119 Query: 123 KKFS-------TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 + + ++ + +LN A + P++LT EF LL L + G+V++ Sbjct: 120 YQRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 R+ L+ SVW + +RTVDTHIKTLR KL+ + I T G+GY L Sbjct: 180 REHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYG---NVIQTVWGIGYKL 227 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 131/232 (56%), Gaps = 10/232 (4%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + ++EDE+ IAD L Y L +EGF + G L + PD+++LD LPD Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG ++C+Q+ A + +P+L LTARS+ D++LGLE+GADDY+ KPF REV R+RT+LR Sbjct: 61 SGLDICKQVTAQY-NIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILR 119 Query: 121 RVKKFSTP-----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R+ + P VI ++ ++ + LT EF LL LL GR+++ Sbjct: 120 RLAQAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFT 179 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 R +L++SVW RTVDTHI+ LR KL A I T G+GY Sbjct: 180 RAELLESVWGYDFPGDMRTVDTHIQRLRKKLDAA----DLITTVFGIGYKFE 227 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 4/229 (1%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + + L++DE IA + M G+A E G L A ++ PD++I+DV +P + G Sbjct: 1 MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 F CR + PV+FL+A+ + VD+ +G + G DDY+ KPF PRE+ + LRR Sbjct: 61 FTTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRA 120 Query: 123 KKFSTP----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 + P ++ G F L+ +++ L+LT EF + L SPG V S++Q Sbjct: 121 SMAAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQ 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 L+++ W ++ IK LR K+ D I T G+GY Sbjct: 181 LVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFE 229 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + ++ED++ IA L L+ + V++ G+ + A+ D+++LD+ LP + G Sbjct: 2 RILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGIT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LC++L A + +L LTAR ++++GL+ GADDY+ KPF E+ AR+R L RR + Sbjct: 62 LCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ- 120 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 T ++ G +L+ +++ + PL+LT E+++L+ LK+P +V +R ++D +W Sbjct: 121 -ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 E + + + TV THI LR KLRA+ I T G+GY L Sbjct: 180 EFDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + L+ED+ + D LV L+ + + V+ G D A+ D++++DVGLP G Sbjct: 2 KILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGIT 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 LCR+L A +P+L +TA+ +VDR+ GL+ GADDY+ KP E+ ARVR LLRR Sbjct: 62 LCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRR--G 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVW 184 T +P++++G+ +L+ + Q+++ + L LT E+ LL+ L+ PG+V+SR QL++ +W Sbjct: 120 SETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLW 179 Query: 185 EDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 + +V H+K LR KL+A + I G+GY L Sbjct: 180 TFDDPPLEESVKAHVKGLRQKLKAAGA-VDWIENIYGIGYRLN 221 Score = 99.4 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V LV+D+ + +V +LQ G + L + PD++ILDV +P SG E Sbjct: 381 NVLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIE 440 Query: 65 LCRQLLALHPA--LPVLFLTA-RS-EEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 LC+ L + LP++FLTA R E + ++ +GADD+V KP E+ R+ L Sbjct: 441 LCQSLRSDPEWQSLPIIFLTAHRDRETIQQV--FTVGADDFVTKPVVVPELLTRIINRLE 498 Query: 121 RVK 123 R + Sbjct: 499 RTR 501 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 120/229 (52%), Gaps = 6/229 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGF-AVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 E + LV+DEQGI D LV L++E F + G L + D+++LDV LPDI Sbjct: 16 TEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDID 75 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFELCRQ+ + P+LF+TARS ++D+L GL IG DDY+ KPF+P EV AR+ LRR Sbjct: 76 GFELCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRR 134 Query: 122 VKKFSTPSP----VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 P+ + F L I+ + P+ T E LL L P R+++ + Sbjct: 135 QHMTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAE 194 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 QL + VW D+TV HI LR K+ + I RG+GY Sbjct: 195 QLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKF 243 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +VEDE IAD LV L +EG+ VE E G + D++ILD LP Sbjct: 1 MSSRILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVED 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G +L R+ + PVLFLTAR +R+ GL+ GADDY+ KPF+ E+ ARVR LLRR Sbjct: 61 GIQLLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRR 120 Query: 122 VKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 V+ + +++ TPL LT EF LL L++PG+V SR ++ D Sbjct: 121 --PGQASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYD 178 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +VW+D+ D T++ H+K LR KL A I T RG GY L Sbjct: 179 TVWDDSYDGLSNTLEVHVKELRHKLEACG--PRVIQTLRGRGYVLE 222 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 2/228 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +V ++ED+ + L + + + V++ G L A Q PD+++LD+ LP + Sbjct: 1 MHKPSVLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKM 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G+E+CR + A +P++ LTA+ +E D + GLE+GADDYV KPFS RE+ AR L Sbjct: 61 NGYEICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLARAAAFL- 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 ++ + V G +L+ A ++ + LT EF LL+ PGR +R Q++ Sbjct: 120 -RRRKGHAATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTRDQIL 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 D VW + DR+VD + TLRAK+ I T R +GY Sbjct: 179 DGVWGNDIVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRFES 226 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ + +VED+Q I + + L + + V V GL + + KQ D+++LDV +P++ Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +GFE+ + + + +P++ LTA EE D++ G ++G DDY+ KPFS + RV +LR Sbjct: 61 NGFEVSKMIRSQ-SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLR 119 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R + + +I ++ A ++ D + LT EF +L+ L ++ +V +R+ ++ Sbjct: 120 RSYDKNVNNHLI-FKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIV 178 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + VW R +DTHIK LR KL + I T +G+GY + Sbjct: 179 EKVWGYDYFGETRIIDTHIKNLRKKL-----AIPYIKTIKGIGYKI 219 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 122/233 (52%), Gaps = 12/233 (5%) Query: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 + +VED I + + LQ+E F+V + RK VP ++ILD+ L D +G +L Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70 Query: 66 CRQLLALHPA--------LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRT 117 CR + +P+L L+AR++E DRL G GADDY+ KPFSP E+ R+++ Sbjct: 71 CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130 Query: 118 LLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 +LRR S I IG +++ ++ P+ LT EF LL L PGRV+SR+ Sbjct: 131 ILRRSIGLSIA--CIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSRE 188 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDL--SPINTHRGMGYSLRG 228 +L++ VW + RTVD H+ LR KL + I+T G GY L Sbjct: 189 ELLERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLES 241 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 133/230 (57%), Gaps = 5/230 (2%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARK---QVPDVMILDVGLPD 59 + +V+DE I L L+ EGF V G L + R + D+++LDV +P Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + G E+ R+L V+ +TARSEEVD+L+GL +GADDYV KPFSPREV ARV+++L Sbjct: 61 MDGLEVLRRLR-TVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVL 119 Query: 120 RRVKKFST-PSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 RR + +T P +R ++ +I+ P+ LT EF LL L+++PGRV+SR Q Sbjct: 120 RRRRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQ 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 L++ VW + +R VD HI+ LRA+L D I T RG+GY G Sbjct: 180 LLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIG 229 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 8/229 (3%) Query: 1 MQRE-TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+ + + +VED++ + L L+ G++V FE GL +++ + + P+++ILD+ LPD Sbjct: 1 MENKVKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPD 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + G+E+ + L L P + +L LTA + D+L G E GADDY+ KPF E+ AR++ LL Sbjct: 61 MDGYEVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALL 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR K + S I+ G E+ E + + + L++ EF LL L K+ RV S++++ Sbjct: 121 RR--KNISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEI 178 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +D+VW D TV+ ++ +R KL I T RG+GY L G Sbjct: 179 LDAVWGIDYYGSDNTVEVYVNYIRKKL-----SPELIKTIRGVGYKLVG 222 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 + +VEDE+ I + + +++E + V G L+ + D+++LD+ +P++ G Sbjct: 2 NILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGIS 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + +++ A+ +P++ +TA + D++L L +GADDY+ KP SP E+ ARV + LRR K Sbjct: 62 VIQKVRAI-STIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYK 120 Query: 125 FSTPSPVI-RIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 ++ +I G +L ++ + + L EF +LK L+ + G+V++++Q+ + V Sbjct: 121 YAEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEV 180 Query: 184 WEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 WE+A + H+ +R K+ + I T RG+GY + Sbjct: 181 WEEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIE 224 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 305 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 15/235 (6%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 V EDE IA + L+++GF VE + G +KA + DV++LD+ +P G Sbjct: 2 HVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGLF 61 Query: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 + + L + PV+ LTAR E DRL GL +GADDY+AKPF E+ AR+ ++RR Sbjct: 62 ILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRS-- 119 Query: 125 FSTPSPVIRIGHFELNEPAAQISWFDTP------------LALTRYEFLLLKTLLKSPGR 172 ++ +G F+L+ ++ + LT EF LL+ L++SPGR Sbjct: 120 AGEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGR 179 Query: 173 VWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 V++R Q+++ VW + VD I+ LR K+ + I + RG+GY R Sbjct: 180 VFTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNE-RWIESVRGVGYRFR 233 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +V+D++ + ++L L G+ VE+ G+ L+ PD ++LDV +P + Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+CRQL + LP+L LTAR +R+ GL+ GADDY+ KPF+ E+ AR+R LLRR Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120 Query: 122 VK---KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 K + S + L+ +++ ++LTR EF LL+ L+ +P RV +R + Sbjct: 121 TKLEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSR 180 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++ VW T ++ ++ LR K A + I+T RG+GY LR Sbjct: 181 ILEEVWGFDFPTSGNALEVYVGYLRRKTEAEG-EPRLIHTVRGVGYVLR 228 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 131/229 (57%), Gaps = 4/229 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 + +VEDE+ ++ L Y L+ EGF V+ RG + ++++PD++ILD LP +S Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60 Query: 62 GFELCRQLLALHPA--LPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 G ELCR+L LP++ LTAR EE +R+ GL GADDYV KPFS E+ ARV+ +L Sbjct: 61 GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR K S ++R G EL+ ++ + L EF LL+ L+ SPGRV+SR QL Sbjct: 121 RRAKP-EVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQL 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 +D VW +RTVD H+ LR L + I T RG GYSL Sbjct: 180 LDGVWGHDIYVDERTVDVHVGRLRKALN-FSNMPDVIRTVRGAGYSLES 227 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKA-RKQVPDVMILDVGLPD 59 M+R V +V+DE + + L + + V E G +D ++ ++ILDV +P Sbjct: 1 MERLKVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPK 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 + G+++C+++ + +P++ LTA+S+E D LLG E+G D+Y++KPFSP+ + ARV ++ Sbjct: 61 MDGWQVCKEIRK-YSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIV 119 Query: 120 RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 RR T + IG +++ A ++ D + L+ EF LL + + G SR+++ Sbjct: 120 RRS--IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKI 177 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +++VW RT+DTH+K LR+K+ I T GMGY Sbjct: 178 LNNVWNYDYFGDARTIDTHVKKLRSKMGDKG---DYIKTIWGMGYKFE 222 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 133/226 (58%), Gaps = 2/226 (0%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + +W+VED + ++ L L+Q FAV+ RG ++ + R + PD+++LD+ LP Sbjct: 8 MINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGA 67 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 G LCR++ A+P++ +TA+ EE+DRLLGLEIGADDYV KPFSPREV ARV+ +LR Sbjct: 68 DGVTLCREIR-TFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLR 126 Query: 121 RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM 180 R I IG L I+ L +T+ EF LL + PG+V+SR +L+ Sbjct: 127 R-GGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDELI 185 Query: 181 DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + YDR +D HIK LR KL A P L PI + G+GY Sbjct: 186 AKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKF 231 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 116/234 (49%), Gaps = 9/234 (3%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 ++ V +VED++ I+ L+ GF + G V K+ D+++LD+ LP S Sbjct: 3 EKRRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKS 62 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G+++CR++ +P+L +TAR+E VD++ GL +GADDY+AKPF P E+ ARV LR+ Sbjct: 63 GYDICREIREQ-VDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQ 121 Query: 122 VKKFSTP--------SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRV 173 + I + + + ++ + + EF LLK L +P V Sbjct: 122 YDRMMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIV 181 Query: 174 WSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 +SR+QL + +W TV HI +R K+ + + + T G GY Sbjct: 182 FSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFN 235 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 130/230 (56%), Gaps = 5/230 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 TV++VEDE I + L L++ G+ VE + G L K R+ PD +ILD+ LPD+ Sbjct: 1 MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 G E+C+Q+ L +P++ L+A+S E DR+ G+ IGADDYV KPFSPREV R+ +LRR Sbjct: 61 GEEICKQIR-LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRR 119 Query: 122 VKKFSTPSPVIRIG--HFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + + ++ ++ + ++LT EF ++ + K PGRV+SR L Sbjct: 120 TRTLNKM-EIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADL 178 Query: 180 MDSVWEDAQD-TYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 + + ED+ Y+R++D HIK LR KL I T GMGY G Sbjct: 179 LQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGG 228 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 9/229 (3%) Query: 3 RETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISG 62 + V LVEDE +A + L+ GF V +F G + ++ P++MILD+ +P + G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 +CR++ LP++ +TAR+EE+DR+LGL +GADDYV KPFSP+E+ ARV+ +LRR+ Sbjct: 61 LTICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119 Query: 123 KKFSTPSPVIRIGHF-ELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMD 181 + + P +++ +I + L LT EF LL+ L+ G+V+SR QL+D Sbjct: 120 DRKAEPEQ----NDLFRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLD 175 Query: 182 SVWEDAQDTYDRTVDTHIKTLRAKLRAI---NPDLSPINTHRGMGYSLR 227 + D+ D DR +D+HIK LR K+ + G+GY Sbjct: 176 HINPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 132/226 (58%), Gaps = 3/226 (1%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 +E + LV+D+ + + +L EG+ V E G+ L+ ++ PD+++LD+ +P +S Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121 GFE+ +++ +PV+ LTA+S+ VD+++GLE+GADDY+ KPF +E+ AR++ +LRR Sbjct: 61 GFEVLKKIRER-SDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRR 119 Query: 122 VKKFSTPSP--VIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 + + V+R+G E++ A ++ PL LT EF +L LL+ PG+ ++R Q+ Sbjct: 120 LGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQI 179 Query: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYS 225 ++V + R +D HI LR+K+ I T +GY Sbjct: 180 SEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 5/233 (2%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M + + ED+ I + LV +L+ EG+ V + G L + + D+ +LD+ +P Sbjct: 1 MDASRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGC 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 +G+++CR+L PAL ++ LTA+ EE+D+++GLE+GADDY+ KPF E+ AR+ +LR Sbjct: 61 NGYDVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLR 120 Query: 121 RVKKFSTP-----SPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWS 175 R ++ + + IG ++ + LT E LL+ + P Sbjct: 121 RSRRTAPGAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALP 180 Query: 176 RQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRG 228 R L++ W RT+D HI LR K+ I T G+GY Sbjct: 181 RNTLLNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYVA 233 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 19/239 (7%) Query: 5 TVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQV--PDVMILDVGLPDISG 62 + +VED + +++ + Q+E + G +++ D++ LD+ LP + G Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 ++ +++ +P++ LTAR E D++LGLE+GADDYV KPFSP + AR++ L RR Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 123 K--------KFSTPSPV------IRIGHFELNEPAAQISWFDTPL-ALTRYEFLLLKTLL 167 + + + V ++ HF+++ + D P+ LT EF LLKTL Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 168 KSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 K+P +V+SR+QL++ VW+ +RTVD HIK LR K+ + I T G+GY Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG--PQVIQTVWGVGYKF 238 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 4/229 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFA-VEVFERGLPVLDKARKQVPDVMILDVGLPD 59 M+ ++ +V+DE+ I D + +L++EG+ + + + D+++LDV + Sbjct: 1 MENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGG 60 Query: 60 ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL 119 +SGFE C + + P+ FLTARS + D+L G +GADDY+ KPF+P E+ AR+R L Sbjct: 61 MSGFEACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 119 Query: 120 RRVKKFSTPS--PVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 +R + S +F + A++ +A + LL+ + P V S+ Sbjct: 120 KRTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 Q+ + VW + TV HI+ LR K+ + I T RG+GY Sbjct: 180 QIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRF 228 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 5/229 (2%) Query: 2 QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDIS 61 E + ++ED+ IA+ L G+ V + G ++ A D++ILDV LP++ Sbjct: 1 MSEHILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPEMD 60 Query: 62 GFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLL-- 119 GFE+CRQ+ +P++ +TAR +++D++ GL +GADDY+ KPFSP + A+++ +L Sbjct: 61 GFEVCRQIR-DKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQ 119 Query: 120 --RRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQ 177 R ++ + + I+ G L+ ++ + + L + EF LL+ L+++ V+S++ Sbjct: 120 YKRLTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKE 179 Query: 178 QLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 +L VW TV HI LR ++ D I T G+GY Sbjct: 180 ELYSRVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKF 228 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 134/231 (58%), Gaps = 17/231 (7%) Query: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 +VEDE IAD + L+ EG+ VE G ++ + PDV++LDV LP G E+CR Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 68 QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK--- 124 ++ A P +PVL LTAR +E D+L+GL +GADDY+ KPFS RE+ ARV L+RRV++ Sbjct: 82 RVQAARP-VPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140 Query: 125 ----FSTPSPVIRI----GHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSR 176 + + +R G E++ ++ T + LT EF LL L +SP V +R Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200 Query: 177 QQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227 ++L++ VW+ A + RTVD+H+K LR KL A + T G+GY+ Sbjct: 201 EKLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFE 246 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 1 MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI 60 M+ + + ED++ IA+++ L+ EGF+V GL ++ + Q D++I+D+ +P + Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL 60 Query: 61 SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120 SG E ++L + +P++ L+A+SE+ D+++GL IGADDY+ KPF+P E+ ARV + LR Sbjct: 61 SGEEAIKKLRDI-SFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLR 119 Query: 121 RVKKFS--TPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQ 178 R + S +I+IG+ +LN S D + LT E+ +L+ L+K+P +V+S + Sbjct: 120 RYHSYDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIES 179 Query: 179 LMDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 + + VW + +TV HI+ +R K+ I G+GY Sbjct: 180 IYEHVWNEPA-IEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKF 226 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.220 0.876 Lambda K H 0.267 0.0677 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,463,102,368 Number of Sequences: 3077464 Number of extensions: 178738051 Number of successful extensions: 510072 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 36947 Number of HSP's successfully gapped in prelim test: 12804 Number of HSP's that attempted gapping in prelim test: 403274 Number of HSP's gapped (non-prelim): 58348 length of query: 229 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 105 effective length of database: 658,790,820 effective search space: 69173036100 effective search space used: 69173036100 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 93 (39.7 bits)