15 c1rnlA_ Probab=99.88   E-value=2.1e-22  Score=151.72  Aligned_columns=184  Identities=20%

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88718897499999999999999889--8999999989999999872998465113332222222221000147665411
Q batch____         2 QRETVWLVEDEQGIADTLVYMLQQEG--FAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCRQLLALHPALPVL   79 (229)
Q Consensus         2 ~k~kILiveDd~~~~~~l~~~L~~~g--~~V~~a~~~~~al~~~~~~~~dliilDi~~p~~~g~~~~~~lr~~~~~~~ii   79 (229)
                      +..|||||||||.++..++.+|+..+  +.|.+|.|+++|++.+.+..||++++|+.+|+++|...+..++...+..+++
T Consensus         1 ~pi~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~eal~~~~~~~pdiilld~~l~~~~g~~~~~~~~~~~~~~~~~   80 (200)
T c1rnlA_           1 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIV   80 (200)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTCGGGCHHHHHHHHTTSCCCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             97089997499899999999998489817999978989999999871997554211111000136899974203100123


Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             35433436664332201333320015770002113432022332222222222222221111111222221111221100
Q batch____        80 FLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYE  159 (229)
Q Consensus        80 ~it~~~~~~~~~~~~~~g~~~~~~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e  159 (229)
                      +++..............++.++..++.....+............                ...............+|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~lt~re  144 (200)
T c1rnlA_          81 VFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM----------------VLSEALTPVLAASLQLTPRE  144 (200)
T ss_dssp             EECSCSCHHHHHHHHHTTCSEEECTTSCHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHCCCCHHH
T ss_pred             CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCC
T ss_conf             44453101110000112222221001222222222222222222----------------22222221111111122211


Q ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             000011211001234699999986056778862489999999999721158
Q batch____       160 FLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLRAKLRAIN  210 (229)
Q Consensus       160 ~~ll~~l~~~~~~~~sr~~l~~~v~~~~~~~~~~tv~~~i~rLR~KL~~~~  210 (229)
                      ..++..+.    +.+|..+|++.+     +++++||++|+++|++||+..+
T Consensus       145 ~~vl~~~~----~g~s~keIA~~L-----~iS~~TV~~h~~~i~~KL~v~n  186 (200)
T c1rnlA_         145 RDILKLIA----QGLPNKMIARRL-----DITESTVKVHVKHMLKKMKLKS  186 (200)
T ss_dssp             HHHHHHHH----TTCCHHHHHHHH-----TCCHHHHHHHHHHHHHHTTCCS
T ss_pred             CCCCCCCC----CCCCHHHHHHHH-----CCCCHHHHHHHHHHHHHCCCCC
T ss_conf             11122245----677689989886-----8870699999999999817998