Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP08368
DateThu Jan 5 11:01:13 GMT 2012
Unique Job ID7e020f4e6be14a06

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ys7B_
Top template information
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
Confidence and coverage
Confidence:100.0% Coverage: 97%
222 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDI
Secondary structure 
SS confidence 
Disorder  ?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  RVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLM
Secondary structure 
SS confidence 
Disorder  ???????????
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........
Sequence  DSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLRGL
Secondary structure 
SS confidence 
Disorder 
?????
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ys7 chain B

3D model

Region: 4 - 227
Aligned: 222
Modelled: 224
Confidence: 100.0%
Identity: 36%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+

Phyre2

PDB 2oqr chain A

3D model

Region: 5 - 227
Aligned: 222
Modelled: 223
Confidence: 100.0%
Identity: 37%
PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis

Phyre2

PDB 2gwr chain A

3D model

Region: 2 - 228
Aligned: 222
Modelled: 226
Confidence: 100.0%
Identity: 36%
PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis

Phyre2

PDB 3r0j chain A

3D model

Region: 2 - 228
Aligned: 220
Modelled: 227
Confidence: 100.0%
Identity: 35%
PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis

Phyre2

PDB 2hqr chain A

3D model

Region: 4 - 227
Aligned: 215
Modelled: 224
Confidence: 100.0%
Identity: 21%
PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Phyre2

PDB 1kgs chain A

3D model

Region: 3 - 227
Aligned: 217
Modelled: 225
Confidence: 100.0%
Identity: 34%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima

Phyre2

PDB 1p2f chain A

3D model

Region: 5 - 228
Aligned: 214
Modelled: 224
Confidence: 100.0%
Identity: 35%
PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog

Phyre2

PDB 3q9s chain A

3D model

Region: 3 - 219
Aligned: 210
Modelled: 212
Confidence: 100.0%
Identity: 34%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans

Phyre2

PDB 1zn2 chain A

3D model

Region: 2 - 210
Aligned: 187
Modelled: 196
Confidence: 99.9%
Identity: 24%
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr

Phyre2

PDB 2ayx chain A

3D model

Region: 2 - 128
Aligned: 127
Modelled: 127
Confidence: 99.9%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain

Phyre2

PDB 3c3w chain B

3D model

Region: 1 - 211
Aligned: 195
Modelled: 209
Confidence: 99.9%
Identity: 27%
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr

Phyre2

PDB 3eq2 chain A

3D model

Region: 5 - 115
Aligned: 108
Modelled: 111
Confidence: 99.9%
Identity: 29%
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb

Phyre2

PDB 1krw chain A

3D model

Region: 1 - 124
Aligned: 124
Modelled: 124
Confidence: 99.9%
Identity: 34%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1mvo chain A

3D model

Region: 1 - 121
Aligned: 120
Modelled: 121
Confidence: 99.9%
Identity: 48%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1rnl chain A

3D model

Region: 2 - 210
Aligned: 184
Modelled: 193
Confidence: 99.9%
Identity: 20%
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl

Phyre2

PDB 3rqi chain A

3D model

Region: 4 - 170
Aligned: 165
Modelled: 167
Confidence: 99.9%
Identity: 20%
PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate

Phyre2

PDB 1dbw chain A

3D model

Region: 1 - 121
Aligned: 121
Modelled: 121
Confidence: 99.9%
Identity: 29%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1w25 chain B

3D model

Region: 4 - 123
Aligned: 120
Modelled: 120
Confidence: 99.9%
Identity: 33%
PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp

Phyre2

PDB 1s8n chain A

3D model

Region: 1 - 207
Aligned: 188
Modelled: 207
Confidence: 99.9%
Identity: 22%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1ys7 chain A domain 2

3D model

Region: 4 - 122
Aligned: 119
Modelled: 119
Confidence: 99.9%
Identity: 39%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2
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c1ys7B_
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c2oqrA_
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c2gwrA_
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c3r0jA_
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c2hqrA_
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c1kgsA_
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c1p2fA_
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c3q9sA_
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c1zn2A_
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c2ayxA_
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c3c3wB_
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c3eq2A_
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d1krwa_
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d1mvoa_
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c1rnlA_
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c3rqiA_
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d1dbwa_
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c1w25B_
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d1s8na_
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d1ys7a2
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ys7B_
100.0 36 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
2c2oqrA_
100.0 37 PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
3c2gwrA_
100.0 36 PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis
4c3r0jA_
100.0 35 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
5c2hqrA_
100.0 21 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
6c1kgsA_
100.0 34 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
7c1p2fA_
100.0 35 PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog
8c3q9sA_
100.0 34 PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans
9c1zn2A_
99.9 24 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
10c2ayxA_
99.9 23 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
11c3c3wB_
99.9 27 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
12c3eq2A_
99.9 29 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb
13d1krwa_
99.9 34 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
14d1mvoa_
99.9 48 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
15c1rnlA_
99.9 20 PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
16c3rqiA_
99.9 20 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate
17d1dbwa_
99.9 29 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
18c1w25B_
99.9 33 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
19d1s8na_
99.9 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
20d1ys7a2
99.9 39 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
21c3dzdA_
not modelled 99.9 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
22c3cfyA_
not modelled 99.9 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
23c3breA_
not modelled 99.9 23 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
24d2a9pa1
not modelled 99.9 41 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
25c1ny5A_
not modelled 99.9 24 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
26c2rjnA_
not modelled 99.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
27d1peya_
not modelled 99.9 29 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
28c2jrlA_
not modelled 99.9 23 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
29d2ayxa1
not modelled 99.9 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
30c3nhzA_
not modelled 99.9 42 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
31c3i5aA_
not modelled 99.9 23 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
32d2pl1a1
not modelled 99.9 38 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
33d1ny5a1
not modelled 99.9 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
34d1kgsa2
not modelled 99.9 41 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
35c2zwmA_
not modelled 99.9 42 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
36c2qzjC_
not modelled 99.9 23 PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
37d1yioa2
not modelled 99.9 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
38d1qkka_
not modelled 99.9 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
39d1jbea_
not modelled 99.9 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
40c3hv2B_
not modelled 99.8 19 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
41d1w25a1
not modelled 99.8 34 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
42c3t6kB_
not modelled 99.8 38 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
43d1zh2a1
not modelled 99.8 45 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
44c2qr3A_
not modelled 99.8 20 PDB header:transcription
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
45c3gt7A_
not modelled 99.8 30 PDB header:hydrolase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
46c3cg4A_
not modelled 99.8 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like);
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
47d1zesa1
not modelled 99.8 40 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
48d1u0sy_
not modelled 99.8 20 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
49c1a2oB_
not modelled 99.8 28 PDB header:bacterial chemotaxis
Chain: B: PDB Molecule:cheb methylesterase;
PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain
50c3lteH_
not modelled 99.8 23 PDB header:transcription
Chain: H: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
51c3jteA_
not modelled 99.8 22 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
52d1p6qa_
not modelled 99.8 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
53c3crnA_
not modelled 99.8 27 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
54d1xhfa1
not modelled 99.8 39 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
55d1a04a2
not modelled 99.8 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
56c3eulB_
not modelled 99.8 21 PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
57c3cz5B_
not modelled 99.8 22 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
58c3b2nA_
not modelled 99.8 20 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
59d1zgza1
not modelled 99.8 38 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
60c3hdgE_
not modelled 99.8 21 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
61c3cu5B_
not modelled 99.8 25 PDB header:transcription regulator
Chain: B: PDB Molecule:two component transcriptional regulator, arac family;
PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg
62c2zayA_
not modelled 99.8 25 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
63c3c3mA_
not modelled 99.8 23 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
64c3kcnA_
not modelled 99.8 22 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
65c3q9vB_
not modelled 99.8 34 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra c-terminal domain(123-221) from deinococcus2 radiodurans
66d1heya_
not modelled 99.8 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
67d1dz3a_
not modelled 99.8 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
68c3a0rB_
not modelled 99.8 31 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
69c2zxjB_
not modelled 99.8 33 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein walr;
PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus
70d1k66a_
not modelled 99.8 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
71c2qxyB_
not modelled 99.8 22 PDB header:transcription
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
72c3hdvB_
not modelled 99.8 18 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida
73c3cnbC_
not modelled 99.8 19 PDB header:dna binding protein
Chain: C: PDB Molecule:dna-binding response regulator, merr family;
PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h
74c3grcD_
not modelled 99.8 19 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
75c3khtA_
not modelled 99.8 22 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator from hahella chejuensis
76d1a2oa1
not modelled 99.8 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
77c2jk1A_
not modelled 99.8 17 PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
78c2hwvA_
not modelled 99.8 32 PDB header:transcription
Chain: A: PDB Molecule:dna-binding response regulator vicr;
PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily.
79c3h1gA_
not modelled 99.8 21 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey homolog;
PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori
80d1mb3a_
not modelled 99.8 28 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
81c2k4jA_
not modelled 99.8 23 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: arsr dna binding domain
82c3gl9B_
not modelled 99.8 32 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator;
PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
83c2qv0A_
not modelled 99.8 25 PDB header:transcription
Chain: A: PDB Molecule:protein mrke;
PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae
84c3eodA_
not modelled 99.8 26 PDB header:signaling protein
Chain: A: PDB Molecule:protein hnr;
PDBTitle: crystal structure of n-terminal domain of e. coli rssb
85c3cg0A_
not modelled 99.8 26 PDB header:lyase
Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase
PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
86d1opca_
not modelled 99.8 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
87c3snkA_
not modelled 99.8 20 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
88d2r25b1
not modelled 99.8 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
89d1gxqa_
not modelled 99.8 32 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
90d1p2fa2
not modelled 99.8 41 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
91c3hzhA_
not modelled 99.8 19 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis response regulator (chey-3);
PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi
92c3f6cB_
not modelled 99.8 15 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
93c3t8yA_
not modelled 99.8 21 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
94c2jzyA_
not modelled 99.8 26 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein pcor;
PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae
95c2hqoA_
not modelled 99.8 22 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
96c3i42A_
not modelled 99.8 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-
PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
97c3klnC_
not modelled 99.8 11 PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
98d1i3ca_
not modelled 99.8 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
99c2qvgA_
not modelled 99.8 19 PDB header:transferase
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila
100d1p2fa1
not modelled 99.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
101c3hebB_
not modelled 99.8 22 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator receiver domain protein (chey);
PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum
102c3nhmA_
not modelled 99.8 28 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from myxococcus xanthus
103c3n0rA_
not modelled 99.8 25 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution
104c2j48A_
not modelled 99.8 24 PDB header:transferase
Chain: A: PDB Molecule:two-component sensor kinase;
PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.
105c2rdmB_
not modelled 99.8 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
106c2hqnA_
not modelled 99.8 23 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
107c3h5iA_
not modelled 99.8 26 PDB header:transcription
Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef
PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans
108c3luaA_
not modelled 99.8 19 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
109d2b4aa1
not modelled 99.8 30 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
110c3eqzB_
not modelled 99.8 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea
111c2pmuD_
not modelled 99.7 29 PDB header:transcription regulation
Chain: D: PDB Molecule:response regulator phop;
PDBTitle: crystal structure of the dna-binding domain of phop
112c3mmnA_
not modelled 99.7 19 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
113d1w25a2
not modelled 99.7 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
114c3c97A_
not modelled 99.7 21 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:signal transduction histidine kinase;
PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae
115d1ys7a1
not modelled 99.7 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
116d1dcfa_
not modelled 99.7 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Receiver domain of the ethylene receptor
117c2nt3A_
not modelled 99.7 23 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator homolog;
PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant)
118c3m6mF_
not modelled 99.7 22 PDB header:lyase/transferase
Chain: F: PDB Molecule:sensory/regulatory protein rpfc;
PDBTitle: crystal structure of rpff complexed with rec domain of rpfc
119c3ktoA_
not modelled 99.7 18 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica
120d1k68a_
not modelled 99.7 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0