BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (192 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_O52222 Flagellar transcriptional activator flhC n=129 T... 374 e-102 UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Ta... 362 5e-99 UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Ta... 334 8e-91 UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Ta... 317 9e-86 UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax... 234 1e-60 UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Ta... 230 2e-59 UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax... 195 7e-49 UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax... 190 2e-47 UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Rals... 187 1e-46 UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subuni... 186 4e-46 UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burk... 186 5e-46 UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax... 57 4e-07 UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovo... 50 4e-05 UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteoba... 46 6e-04 UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechlor... 40 0.032 >UniRef50_O52222 Flagellar transcriptional activator flhC n=129 Tax=Proteobacteria RepID=FLHC_SALTY Length = 192 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/192 (93%), Positives = 186/192 (96%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 MSEKSIVQEARDIQLAMELI LGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS Sbjct: 1 MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 TDWFMTWEQN+HASMFCNAWQFLLKTGLC+GVDAVIKAYRLYLEQCPQ EGPLLALTRA Sbjct: 61 TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA 120 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII 180 WTLVRFVESGLL+LSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLS++ ADII Sbjct: 121 WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII 180 Query: 181 PQLLDEQRVQAV 192 PQLLDEQ QAV Sbjct: 181 PQLLDEQIEQAV 192 >UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria RepID=C9XV32_CROTZ Length = 193 Score = 362 bits (928), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M++KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS Sbjct: 1 MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119 TDWFMTWEQN+HASMFCNAWQ+LL+TGLC+GVDAVIKAYRLYLEQCPQ + GPLLALTR Sbjct: 61 TDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDAGPLLALTR 120 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179 AWTLVRFV+SG+L+LS CN CGGNF+THAHQPVGSFACSLCQPPSRAVKRRKLS++ ADI Sbjct: 121 AWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADI 180 Query: 180 IPQLLDEQRVQAV 192 IPQLLDEQ QAV Sbjct: 181 IPQLLDEQVEQAV 193 >UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria RepID=FLHC_SERMA Length = 194 Score = 334 bits (857), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 161/193 (83%), Positives = 177/193 (91%), Gaps = 1/193 (0%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M EKSIVQEA+DIQLAMELI+LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS Sbjct: 2 MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 61 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCP-QAEEGPLLALTR 119 TDWFMTWEQN+H+SMF NA+ FL+K+G C+GV+AVIKAYRLYLEQCP QA E PLLALTR Sbjct: 62 TDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQAGEAPLLALTR 121 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179 AWTLVRFV+SG+LQLS+C+CCGG FITHAHQP+ F CSLCQPPSRAVKRRKLS ADI Sbjct: 122 AWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADI 181 Query: 180 IPQLLDEQRVQAV 192 IPQLLDEQ +A+ Sbjct: 182 IPQLLDEQVKRAI 194 >UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria RepID=FLHC_XENNE Length = 194 Score = 317 bits (813), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 151/187 (80%), Positives = 165/187 (88%), Gaps = 2/187 (1%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M EKSIVQEA+DIQLAMELITLGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS Sbjct: 1 MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEG--PLLALT 118 TDWFMTWEQN+H+SMF NA++FLLK+G C GV+ V+KAYRLYLEQCP G P+LALT Sbjct: 61 TDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPGNNGDAPILALT 120 Query: 119 RAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178 RAWTLVRFV+SG+LQ + C CCGG FITHAHQPV SF CSLCQPPSRAVK+RKLS PAD Sbjct: 121 RAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPAD 180 Query: 179 IIPQLLD 185 QLLD Sbjct: 181 TNSQLLD 187 >UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae RepID=Q2NX28_SODGM Length = 196 Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 111/179 (62%), Positives = 140/179 (78%), Gaps = 1/179 (0%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M KSI+QE+RDIQLAMELI LGARL +LE+ET LSR RL++LYKE++G+P PKG+LPFS Sbjct: 1 MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119 DWF++WEQN+H+S F NA+ L++ G ++A+IKAYRLYLE CPQ ++ GPLL LTR Sbjct: 61 ADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDGGPLLGLTR 120 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178 AW L+RF++S LL + C CGG FIT+A P +F CS C PPSRAVK+RKLS AD Sbjct: 121 AWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD 179 >UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales RepID=A9ACW3_BURM1 Length = 198 Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 104/171 (60%), Positives = 131/171 (76%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M+ KS+V E ++I LA+ELI LGARLQ+LE+ET LSR RLIKLYKEL+G PPKGMLPFS Sbjct: 15 MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS 74 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 TDWFMTW+ N+H+S+F N ++F+ G C + A++KAYRLYLE + + L+LTRA Sbjct: 75 TDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRA 134 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 WTLVRF +SG+LQ++ C CGG+F+ HAH P F C LCQPPSRA K RK Sbjct: 135 WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK 185 >UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia RepID=B2TE01_BURPP Length = 189 Score = 195 bits (495), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 86/165 (52%), Positives = 117/165 (70%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M ++S+ ++A+++ A+ LI LGAR+Q+LESE LSR R+I+LY+E++G PPKGMLPFS Sbjct: 1 MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 DW+MTW N+HAS+F N + FL C+ +DA+ K YRLYLE C +E P+L LTRA Sbjct: 61 ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA 120 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165 WTLVRF ++ +LQL+ C C G F+ H H + C CQPPSR Sbjct: 121 WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR 165 >UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LMQ4_RALME Length = 213 Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 88/186 (47%), Positives = 128/186 (68%), Gaps = 1/186 (0%) Query: 2 SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61 + KS+++E + +LA+EL+ LGARLQ+LESE +SR RL +LYKELRG PPKG LP S Sbjct: 3 TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSP 62 Query: 62 DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121 +WF+TW NVHAS+F +A++FL+ G + + ++ AYRLY+E E L+ TRAW Sbjct: 63 EWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAW 122 Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD-II 180 T++RF++SG L S+C CCGG+F+ H + +F C LC PP RA K +KL+ + ++ Sbjct: 123 TMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPFVV 182 Query: 181 PQLLDE 186 P+ L + Sbjct: 183 PEDLQQ 188 >UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46TH1_RALEJ Length = 210 Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 85/158 (53%), Positives = 112/158 (70%) Query: 4 KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDW 63 +S +Q+A D QLA+ELI LGAR Q++E+E LSR R+ +LY+EL G PPKGMLPFS DW Sbjct: 11 RSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSADW 70 Query: 64 FMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTL 123 F+TW N HAS + +++ + G+ AV+ +YR+Y E E L++ TR WTL Sbjct: 71 FVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFWTL 130 Query: 124 VRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 VRF E GLLQLS+C CCGG F+THAH+P+ SF C+LCQ Sbjct: 131 VRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ 168 >UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subunit n=2 Tax=Nitrosomonas RepID=Q0AI30_NITEC Length = 191 Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 86/171 (50%), Positives = 116/171 (67%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M KSI+ E + IQLA EL+ LGARLQ+LE T LSR RL+KLYKE++G PPKGMLP+S Sbjct: 1 MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 DWF W+ N+H+S+F N + ++ + +DA+IK+Y+LYLE +L+ TRA Sbjct: 61 EDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRA 120 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 WTLVRFVES +L ++SC C GNF+ H+ + C LC PSRA K ++ Sbjct: 121 WTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR 171 >UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burkholderiales RepID=Q0K2R3_RALEH Length = 203 Score = 186 bits (471), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 88/168 (52%), Positives = 114/168 (67%) Query: 4 KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDW 63 KS++Q+ I+LA+E+I LGARLQ+LESE L R RLI+LYKEL G PPKGMLPFSTDW Sbjct: 28 KSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTDW 87 Query: 64 FMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTL 123 F++W N HASM A++F+ G +G+ AV+ +YR+Y EQ E L+ TRAWTL Sbjct: 88 FVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWTL 147 Query: 124 VRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 VRF E G+L+L+ C C G ++ A + C LC PP+RA K RK Sbjct: 148 VRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRK 195 >UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia pickettii 12D RepID=C6BQC6_RALP1 Length = 185 Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 17/163 (10%) Query: 19 LITLGARLQMLESETQLSRGRLIKLYKE----LRGSPPPKGMLPFSTDW---FMTWEQNV 71 L GAR + +++ G I ++E L G P GM P S D+ F + Sbjct: 19 LCEFGARPKTMQALLTPHGGVHIATFREIFTQLTGRTPKPGMSP-SPDFGSFFQKPNRRF 77 Query: 72 HASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGL 131 S+ +++ L G + VDA+I+AY + E P E+ + RA L R +SG Sbjct: 78 DCSLILHSYNKLCYLG-AHHVDALIEAYAFFRESTP-PEKSMEFSFERALMLARAFDSGE 135 Query: 132 LQLSSCNCCGGNFITHAHQPV-------GSFACSLCQPPSRAV 167 L+L+ C CC N + ++PV G+F S + SR V Sbjct: 136 LRLTECECCSSNHVHERNEPVMCPVCNNGNFGGSRKRHKSRVV 178 >UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovorax RepID=A1W669_ACISJ Length = 220 Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 16/188 (8%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M I Q R +QLA + LGAR++ + T L L+ L PP G P S Sbjct: 1 MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNS 59 Query: 61 TDWFMTWE--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALT 118 +W+ Q + AS+ ++ + G +A++ AYR Y P ++ Sbjct: 60 REWYHRANLVQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMY---RPPPRISFD 115 Query: 119 RAWTLVRFVESGL-------LQLSSCNCCGGNFI-THAHQPVGSFACSLCQPPSRAVKRR 170 RA+ L E GL +L+SC+ C F+ T A + C CQ R + Sbjct: 116 RAFDLAAHTE-GLWIAKAPNFRLASCSRCDSEFLDTFAGADTSARPCPFCQLLDRHARDP 174 Query: 171 KLSQNPAD 178 +L+ + A+ Sbjct: 175 RLTASFAE 182 >UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteobacteria RepID=A3GZH1_VIBCH Length = 177 Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%) Query: 19 LITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCN 78 LI G R ++ +T L + +L+KE+ G P G LP S + V S+ Sbjct: 17 LIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKSRRALVEGSLLMA 76 Query: 79 AWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAE---EGP--LLALTRAWTLVRFVESGL 131 + + + +DA++KAY YL +A+ E P L + W L R + S L Sbjct: 77 LYVNIGGDNVYKQLNIDALMKAYDAYLVARKEADLPAEIPWKKLTINEGWVLARDLRSQL 136 Query: 132 LQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 L C CG ++T + Q + C +C+ Sbjct: 137 ASLHRCR-CGSLYLTVSQQRI-QLKCPVCE 164 >UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica RCB RepID=Q47DP0_DECAR Length = 212 Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 28/167 (16%) Query: 11 RDIQLAMELITLGARLQMLESETQLSRGRLIKL-YKELRGSPPPKGMLPFSTDWFMTWE- 68 R +QLA +L LGARL+ + T + ++ L + + R P+G P S +W+ Sbjct: 10 RAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFPDARTI--PRGRAPDSAEWYHGANL 67 Query: 69 -QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGP--LLALTRAWTLVR 125 A + + L GL G +A++ AYR Y QA P ++L RA+ LV Sbjct: 68 ILRTDACLIGARYCQLRNQGLATG-EALVFAYRAY-----QAATLPPYRISLDRAFNLVS 121 Query: 126 FVE------SGLLQLSSCNCCGGNFITHAHQPVGSFA-----CSLCQ 161 +++ + L + +C CG FI VG+ A C C+ Sbjct: 122 YIDGIWLANAPALSVLTCPGCGCEFIA----AVGTVAHPGEPCPFCK 164 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_O52222 Flagellar transcriptional activator flhC n=129 T... 324 1e-87 UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Ta... 319 2e-86 UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Ta... 315 6e-85 UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Ta... 305 4e-82 UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Ta... 278 6e-74 UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax... 265 7e-70 UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax... 257 1e-67 UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subuni... 257 2e-67 UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burk... 249 4e-65 UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax... 247 2e-64 UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Rals... 238 7e-62 UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovo... 177 2e-43 UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax... 156 3e-37 UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteoba... 150 3e-35 Sequences not found previously or not previously below threshold: UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechlor... 94 2e-18 UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp... 80 3e-14 UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellula... 74 3e-12 UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralston... 65 9e-10 UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammap... 64 3e-09 UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgar... 63 5e-09 UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polarom... 62 1e-08 UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Vermine... 56 5e-07 UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenop... 55 1e-06 UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polarom... 49 1e-04 UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudom... 43 0.005 UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriav... 39 0.084 >UniRef50_O52222 Flagellar transcriptional activator flhC n=129 Tax=Proteobacteria RepID=FLHC_SALTY Length = 192 Score = 324 bits (830), Expect = 1e-87, Method: Composition-based stats. Identities = 180/192 (93%), Positives = 186/192 (96%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 MSEKSIVQEARDIQLAMELI LGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS Sbjct: 1 MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 TDWFMTWEQN+HASMFCNAWQFLLKTGLC+GVDAVIKAYRLYLEQCPQ EGPLLALTRA Sbjct: 61 TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA 120 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII 180 WTLVRFVESGLL+LSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLS++ ADII Sbjct: 121 WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII 180 Query: 181 PQLLDEQRVQAV 192 PQLLDEQ QAV Sbjct: 181 PQLLDEQIEQAV 192 >UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria RepID=C9XV32_CROTZ Length = 193 Score = 319 bits (818), Expect = 2e-86, Method: Composition-based stats. Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M++KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS Sbjct: 1 MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119 TDWFMTWEQN+HASMFCNAWQ+LL+TGLC+GVDAVIKAYRLYLEQCPQ + GPLLALTR Sbjct: 61 TDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDAGPLLALTR 120 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179 AWTLVRFV+SG+L+LS CN CGGNF+THAHQPVGSFACSLCQPPSRAVKRRKLS++ ADI Sbjct: 121 AWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADI 180 Query: 180 IPQLLDEQRVQAV 192 IPQLLDEQ QAV Sbjct: 181 IPQLLDEQVEQAV 193 >UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria RepID=FLHC_SERMA Length = 194 Score = 315 bits (806), Expect = 6e-85, Method: Composition-based stats. Identities = 161/193 (83%), Positives = 177/193 (91%), Gaps = 1/193 (0%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M EKSIVQEA+DIQLAMELI+LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS Sbjct: 2 MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 61 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCP-QAEEGPLLALTR 119 TDWFMTWEQN+H+SMF NA+ FL+K+G C+GV+AVIKAYRLYLEQCP QA E PLLALTR Sbjct: 62 TDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQAGEAPLLALTR 121 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179 AWTLVRFV+SG+LQLS+C+CCGG FITHAHQP+ F CSLCQPPSRAVKRRKLS ADI Sbjct: 122 AWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADI 181 Query: 180 IPQLLDEQRVQAV 192 IPQLLDEQ +A+ Sbjct: 182 IPQLLDEQVKRAI 194 >UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria RepID=FLHC_XENNE Length = 194 Score = 305 bits (782), Expect = 4e-82, Method: Composition-based stats. Identities = 151/194 (77%), Positives = 168/194 (86%), Gaps = 2/194 (1%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M EKSIVQEA+DIQLAMELITLGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS Sbjct: 1 MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQ--AEEGPLLALT 118 TDWFMTWEQN+H+SMF NA++FLLK+G C GV+ V+KAYRLYLEQCP + P+LALT Sbjct: 61 TDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPGNNGDAPILALT 120 Query: 119 RAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178 RAWTLVRFV+SG+LQ + C CCGG FITHAHQPV SF CSLCQPPSRAVK+RKLS PAD Sbjct: 121 RAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPAD 180 Query: 179 IIPQLLDEQRVQAV 192 QLLD +A+ Sbjct: 181 TNSQLLDGFAQKAM 194 >UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales RepID=A9ACW3_BURM1 Length = 198 Score = 278 bits (711), Expect = 6e-74, Method: Composition-based stats. Identities = 104/171 (60%), Positives = 131/171 (76%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M+ KS+V E ++I LA+ELI LGARLQ+LE+ET LSR RLIKLYKEL+G PPKGMLPFS Sbjct: 15 MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS 74 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 TDWFMTW+ N+H+S+F N ++F+ G C + A++KAYRLYLE + + L+LTRA Sbjct: 75 TDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRA 134 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 WTLVRF +SG+LQ++ C CGG+F+ HAH P F C LCQPPSRA K RK Sbjct: 135 WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK 185 >UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae RepID=Q2NX28_SODGM Length = 196 Score = 265 bits (677), Expect = 7e-70, Method: Composition-based stats. Identities = 111/179 (62%), Positives = 140/179 (78%), Gaps = 1/179 (0%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M KSI+QE+RDIQLAMELI LGARL +LE+ET LSR RL++LYKE++G+P PKG+LPFS Sbjct: 1 MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119 DWF++WEQN+H+S F NA+ L++ G ++A+IKAYRLYLE CPQ ++ GPLL LTR Sbjct: 61 ADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDGGPLLGLTR 120 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178 AW L+RF++S LL + C CGG FIT+A P +F CS C PPSRAVK+RKLS AD Sbjct: 121 AWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD 179 >UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LMQ4_RALME Length = 213 Score = 257 bits (657), Expect = 1e-67, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 128/188 (68%), Gaps = 1/188 (0%) Query: 2 SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61 + KS+++E + +LA+EL+ LGARLQ+LESE +SR RL +LYKELRG PPKG LP S Sbjct: 3 TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSP 62 Query: 62 DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121 +WF+TW NVHAS+F +A++FL+ G + + ++ AYRLY+E E L+ TRAW Sbjct: 63 EWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAW 122 Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD-II 180 T++RF++SG L S+C CCGG+F+ H + +F C LC PP RA K +KL+ + ++ Sbjct: 123 TMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPFVV 182 Query: 181 PQLLDEQR 188 P+ L + Sbjct: 183 PEDLQQTI 190 >UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subunit n=2 Tax=Nitrosomonas RepID=Q0AI30_NITEC Length = 191 Score = 257 bits (656), Expect = 2e-67, Method: Composition-based stats. Identities = 86/171 (50%), Positives = 116/171 (67%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M KSI+ E + IQLA EL+ LGARLQ+LE T LSR RL+KLYKE++G PPKGMLP+S Sbjct: 1 MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 DWF W+ N+H+S+F N + ++ + +DA+IK+Y+LYLE +L+ TRA Sbjct: 61 EDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRA 120 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 WTLVRFVES +L ++SC C GNF+ H+ + C LC PSRA K ++ Sbjct: 121 WTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR 171 >UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burkholderiales RepID=Q0K2R3_RALEH Length = 203 Score = 249 bits (635), Expect = 4e-65, Method: Composition-based stats. Identities = 88/174 (50%), Positives = 115/174 (66%) Query: 3 EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62 KS++Q+ I+LA+E+I LGARLQ+LESE L R RLI+LYKEL G PPKGMLPFSTD Sbjct: 27 GKSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTD 86 Query: 63 WFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWT 122 WF++W N HASM A++F+ G +G+ AV+ +YR+Y EQ E L+ TRAWT Sbjct: 87 WFVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWT 146 Query: 123 LVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNP 176 LVRF E G+L+L+ C C G ++ A + C LC PP+RA K RK + Sbjct: 147 LVRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRKPAPAA 200 >UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia RepID=B2TE01_BURPP Length = 189 Score = 247 bits (630), Expect = 2e-64, Method: Composition-based stats. Identities = 86/165 (52%), Positives = 117/165 (70%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M ++S+ ++A+++ A+ LI LGAR+Q+LESE LSR R+I+LY+E++G PPKGMLPFS Sbjct: 1 MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 DW+MTW N+HAS+F N + FL C+ +DA+ K YRLYLE C +E P+L LTRA Sbjct: 61 ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA 120 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165 WTLVRF ++ +LQL+ C C G F+ H H + C CQPPSR Sbjct: 121 WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR 165 >UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46TH1_RALEJ Length = 210 Score = 238 bits (607), Expect = 7e-62, Method: Composition-based stats. Identities = 85/160 (53%), Positives = 112/160 (70%) Query: 2 SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61 +S +Q+A D QLA+ELI LGAR Q++E+E LSR R+ +LY+EL G PPKGMLPFS Sbjct: 9 PARSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSA 68 Query: 62 DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121 DWF+TW N HAS + +++ + G+ AV+ +YR+Y E E L++ TR W Sbjct: 69 DWFVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFW 128 Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 TLVRF E GLLQLS+C CCGG F+THAH+P+ SF C+LCQ Sbjct: 129 TLVRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ 168 >UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovorax RepID=A1W669_ACISJ Length = 220 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M I Q R +QLA + LGAR++ + T L L+ L PP G P S Sbjct: 1 MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNS 59 Query: 61 TDWFMTWE--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALT 118 +W+ Q + AS+ ++ + G +A++ AYR Y P ++ Sbjct: 60 REWYHRANLVQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMY---RPPPRISFD 115 Query: 119 RAWTLVRFVE------SGLLQLSSCNCCGGNFI-THAHQPVGSFACSLCQPPSRAVKRRK 171 RA+ L E + +L+SC+ C F+ T A + C CQ R + + Sbjct: 116 RAFDLAAHTEGLWIAKAPNFRLASCSRCDSEFLDTFAGADTSARPCPFCQLLDRHARDPR 175 Query: 172 LSQNPAD 178 L+ + A+ Sbjct: 176 LTASFAE 182 >UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia pickettii 12D RepID=C6BQC6_RALP1 Length = 185 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 17/165 (10%) Query: 19 LITLGARLQMLESETQLSRGRLIKLYKE----LRGSPPPKGMLPFSTDW---FMTWEQNV 71 L GAR + +++ G I ++E L G P GM P S D+ F + Sbjct: 19 LCEFGARPKTMQALLTPHGGVHIATFREIFTQLTGRTPKPGMSP-SPDFGSFFQKPNRRF 77 Query: 72 HASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGL 131 S+ +++ L G + VDA+I+AY + E P E+ + RA L R +SG Sbjct: 78 DCSLILHSYNKLCYLG-AHHVDALIEAYAFFRESTP-PEKSMEFSFERALMLARAFDSGE 135 Query: 132 LQLSSCNCCGGNFITHAHQPV-------GSFACSLCQPPSRAVKR 169 L+L+ C CC N + ++PV G+F S + SR V Sbjct: 136 LRLTECECCSSNHVHERNEPVMCPVCNNGNFGGSRKRHKSRVVAT 180 >UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteobacteria RepID=A3GZH1_VIBCH Length = 177 Score = 150 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 7 VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMT 66 + ++ A LI G R ++ +T L + +L+KE+ G P G LP S + Sbjct: 5 LSKSELFTRASLLIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKS 64 Query: 67 WEQNVHASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGP-----LLALTR 119 V S+ + + + +DA++KAY YL +A+ L + Sbjct: 65 RRALVEGSLLMALYVNIGGDNVYKQLNIDALMKAYDAYLVARKEADLPAEIPWKKLTINE 124 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 W L R + S L L C CG ++T + Q + C +C+ Sbjct: 125 GWVLARDLRSQLASLHRC-RCGSLYLTVSQQRI-QLKCPVCE 164 >UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica RCB RepID=Q47DP0_DECAR Length = 212 Score = 94.0 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%) Query: 8 QEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTW 67 + R +QLA +L LGARL+ + T + ++ L+ P+G P S +W+ Sbjct: 7 RHLRAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFP-DARTIPRGRAPDSAEWYHGA 65 Query: 68 E--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125 A + + L GL G +A++ AYR Y ++L RA+ LV Sbjct: 66 NLILRTDACLIGARYCQLRNQGLATG-EALVFAYRAYQAATL---PPYRISLDRAFNLVS 121 Query: 126 FVE------SGLLQLSSCNCCGGNFITHAHQPVG-SFACSLCQPPSRAVKRRKLSQNP 176 +++ + L + +C CG FI C C+ R ++ + Sbjct: 122 YIDGIWLANAPALSVLTCPGCGCEFIAAVGTVAHPGEPCPFCKLLERFHLDHRIQASY 179 >UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEH2_9ENTR Length = 176 Score = 80.5 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 7/165 (4%) Query: 3 EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62 + ++V++ L +++ LG R +++ S + L KE S G L S Sbjct: 2 KAALVRDEDKFALTQKMVKLGFRRKIIVHSLNASDRVIDFLRKEFHLSDVSIGRLKHSET 61 Query: 63 WFMTWEQNVHASMFCNAWQFLLKT-GLCNGVDAVIKAYRLYLEQ----CPQAEEGPLLAL 117 T + V A+ F + + K + + V+ A+ +Y E P+ ++ Sbjct: 62 LLNTTHKKVEATNFMSIYLRRSKDPNNSDNIVDVVSAFEIYRELNLKFRPEEASKVMIDA 121 Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFIT--HAHQPVGSFACSLC 160 AWTL R + +++ C C +FI+ +P C C Sbjct: 122 NEAWTLARDFRAEEIRMVRCFRCDLSFISPQSCDRPRKKHICPFC 166 >UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellular organisms RepID=A9ARR3_BURM1 Length = 401 Score = 73.9 bits (180), Expect = 3e-12, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 14/165 (8%) Query: 16 AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHAS 74 A L+ G R S +L++ + + + E+ G+ P G P S WF+ T +H + Sbjct: 234 ASALMAYGCRASTAASLFRLNQNAMRQRFFEMHGTSSPCGNTPNSLSWFVETPTNRLHGT 293 Query: 75 MFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESG-LLQ 133 +F ++ L N A+I +Y + +++ R L R + + L Sbjct: 294 IFTWLYRAALAA-GANAPQALIATNDVYQQIFGGQH---AISVDRGCNLTRAMAADNRLT 349 Query: 134 LSSCNCCGGNFITHAHQPV----GSFACSLCQ----PPSRAVKRR 170 ++ C C ++ ++ SF C C P R K R Sbjct: 350 IAPCRSCRTEYLVSNNETKIEMHHSFDCPACTGQLGPKRRGTKAR 394 >UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralstonia RepID=B2UCN2_RALPJ Length = 393 Score = 65.5 bits (158), Expect = 9e-10, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 21/176 (11%) Query: 9 EARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TW 67 A+ + LI L R + S + LY+++ G P G++P S+ W++ + Sbjct: 223 RAQMERYTEALIGLRCRASSVASMFPGTAATARALYRQIHGESSPCGLMPSSSSWYVESV 282 Query: 68 EQNVHASMFCNAWQFLLKTGLCNGVDAVIKAY----RLYLEQCPQAEEGPLLALTRAWTL 123 + ++ + L N +A I A RL+ + L RA+ L Sbjct: 283 SSRIQSTTLIWLYWSALA-ARANEPEAFITALDTVGRLF-------GDAARLTPDRAFHL 334 Query: 124 VRFVESGL-LQLSSCNCCGGNFITHAHQPV----GSFACSLC---QPPSRAVKRRK 171 R V +G L +SSC C +++T P SF C C R K RK Sbjct: 335 ARSVSTGSDLSMSSCRTCSTHYLTCNTTPKIELAASFYCPSCTGALTAPRKGKPRK 390 >UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammaproteobacteria RepID=C4NV70_ECOLX Length = 183 Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 14/168 (8%) Query: 16 AMELITLGARLQMLESETQLSRGRLIKLYKELR--GSPPPKGMLPF--STDWFMTWEQNV 71 A + G +++ ET L+ ++ +LY++L G + F + + Sbjct: 15 ARHMALAGYITKIIMIETGLTYKQVRRLYQDLERDGYTLERKSRTFRGGATLIHSHTSKI 74 Query: 72 HASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGPL------LALTRAWTL 123 AS+ + + + + A+ KA+R+Y + G +T AW L Sbjct: 75 QASLLMQLYFNIGGEAVLRSVNIKALNKAFRMYHAIRKEV-PGMKGARWAPFDITDAWCL 133 Query: 124 VRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 + SG L C+ C + T +Q C C+ R K Sbjct: 134 ASELRSGDAMLEVCDNCKCTYFTSVNQRTC-VECPFCKEQGRHGGGEK 180 >UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgaris RepID=Q8L260_PROVU Length = 163 Score = 63.1 bits (152), Expect = 5e-09, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 57/151 (37%), Gaps = 6/151 (3%) Query: 15 LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHAS 74 L ++ LG R ++ + + + L + +G L +T + + + ++ Sbjct: 12 LLKRMVALGFRKAIITTSLNAAERLVDTLKRNCNQEDNGRGRLKVATSFLSMKQDTIEST 71 Query: 75 MFCNAWQFLLKT-GLCNGVDAVIKAYRLYLEQ----CPQAEEGPLLALTRAWTLVRFVES 129 F + + K + + +I A+ ++ P+ ++ AW L R + Sbjct: 72 NFMTIYLRIAKDPEKVSDIRDIITAFEIFQNLHQKFRPRNSSDMIIDANAAWILARDYRT 131 Query: 130 GLLQLSSCNCCGGNFITHAHQPVGSFACSLC 160 +++ +C C ++I+ + C C Sbjct: 132 EEIKMVTCTHCNNHYIS-PYDEKPKHKCPFC 161 >UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666 RepID=Q11ZG5_POLSJ Length = 197 Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%) Query: 11 RDIQLAMELITLGARLQMLESETQLSRGRL--IKLYKELRGSPPPKGMLPFSTDWFMTWE 68 I EL++ AR + + ++Y E PP G P + + Sbjct: 19 EQITSIRELVSFRARPATIAQLVPHQYAEMAARRIY-ETSDLRPPGGTQPSCKQVVLMYR 77 Query: 69 QNVHASMFCNAWQFLLKTGLCNGV---DAVIKAYRLYLEQCPQA-EEGPLLALTRAWTLV 124 + S + C GV A++ YRLY + +E L++ + + Sbjct: 78 SLTYRSNLNALYTQFSDL-RCAGVAFESALVVVYRLYRRKAGFGIDEKQLISFDHWYVVA 136 Query: 125 RFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQ 182 +E+ +L C CG + H V S C C + A RK + ++P+ Sbjct: 137 LEIETRESRLHRCGACGSRNLLTKHISVTSIDCVFCDLLATA--NRKATSKADPMVPR 192 >UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WPA9_VEREI Length = 183 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 32/177 (18%) Query: 12 DIQL---AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TW 67 D+QL A + + AR ++ T LS K++ + G P G P WF+ + Sbjct: 6 DLQLYETAKVMAKMQARACVISRITGLSIADTRKIWHDEMGRSSPSGQQPNDDQWFLKSP 65 Query: 68 EQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC---------------PQAEEG 112 + +H ++ + K A AY Y Q+E+ Sbjct: 66 LRRMHGALILQLYARAQK--AMPPHAAFTHAYYHYARLTAGLAPRSTWQGDPAFRQSEDD 123 Query: 113 PLLALTRA-WTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160 ++ RA + + + + L LQ C CG ++ H + C +C Sbjct: 124 YVIPFLRAHFLTLLYTDETLSDGQRKCNLQTRRCKSCGTLYLGHVEEVSS--KCPIC 178 >UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae RepID=D2TXU7_9ENTR Length = 173 Score = 55.4 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 53/165 (32%), Gaps = 22/165 (13%) Query: 15 LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKG---------MLPFSTDWFM 65 LA+E+I LG R ++ SE K G G L F+ Sbjct: 7 LAVEMIKLGFRKAIILSEIPSLSSSAFDCLKNEAGLS---GNGYDEKRLRRLKKVNRVFV 63 Query: 66 TWEQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLE----QCPQAEEGPL---LAL 117 H S+F + + ++ ++ AY Y E C + + Sbjct: 64 DDNLKKHGSLFLYVYLIMASNPKNKMNIEELVSAYSSYRELYNVHCNSYNDTLKSEMIDA 123 Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGN--FITHAHQPVGSFACSLC 160 AW + S ++ L C C ++T V + C+ C Sbjct: 124 NMAWQIATAYRSDVIDLVGCFYCRNKYMYLTCNADTVCNMKCAFC 168 >UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VVD0_POLNA Length = 180 Score = 48.5 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 29/170 (17%) Query: 16 AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHAS 74 A+ + + AR ++ L++ ++K+ P G P + DW++ T ++ + Sbjct: 14 AVYMARMLARNPIIVHALGLTKREGETIWKKTNNRSSPSGQFPSNHDWYLETTDRRFQGA 73 Query: 75 MFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL----------------LALT 118 +F +Q A+ Y + +GP L + Sbjct: 74 LFILMYQK--ALTAMPRELALPHTYYHFSNITAGEWKGPKGQDVDGAFRNIESDYALPYS 131 Query: 119 RAWTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160 RA+ L+ + L + C C G ++ + G C LC Sbjct: 132 RAFNLIAGYHNEQNPQSRHTHLVVKCCKGCLGKYLARFDE--GGSKCPLC 179 >UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudomonas RepID=B7XGS9_PSEPU Length = 344 Score = 43.1 bits (100), Expect = 0.005, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 64/157 (40%), Gaps = 16/157 (10%) Query: 15 LAMELITLGARLQMLESETQLSRGRLIK----LYKELRGSPPPKG--MLPFSTDWFMTWE 68 +A EL+ + +++ T L+ +++ L +++ G P T E Sbjct: 195 VATELLQQKLQPKLVAQWTGLNADEVVRMKRSLLRDIPLVQSQSGRIQAPNKT----LAE 250 Query: 69 QNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLEQCPQAEEGP--LLALTRAWTLVR 125 +H+ ++ ++ L L AV+ A+R Y+E C +++ + + L Sbjct: 251 SPLHSLLYLTIYRLLADNPLRRTNARAVVAAHREYVELCRAVGIEASDMISPSNGYQLSN 310 Query: 126 FVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQP 162 +++G + L+ C+ C +A +P C C Sbjct: 311 AMKTGDITLTPCSKCKEINARYALKPGR---CIWCNH 344 >UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=Q5NV35_RALME Length = 392 Score = 38.9 bits (89), Expect = 0.084, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 13/159 (8%) Query: 22 LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHASMFCNAW 80 G R + + S S Y+ + G P G P S WF+ T + V ++ + Sbjct: 237 FGCRAKSVSSLFNTSLEVARDAYRRIHGRSSPSGQPPSSLTWFIETPPRRVQSTFQMWLF 296 Query: 81 QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVE-SGLLQLSSCNC 139 + + + ++ + A + + + R+ L R + S L + C Sbjct: 297 RSAIAR-EVSTPESFVAAIDINRTFFA---DDCKVPPERSMHLARSMAMSEELAVWPCRK 352 Query: 140 CGGNFIT----HAHQPVGSFACSLCQ---PPSRAVKRRK 171 CG ++ + + SF C C +R RR+ Sbjct: 353 CGTPYLASNSSDKIELLHSFTCPCCNGTLTATRGGNRRR 391 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_O52222 Flagellar transcriptional activator flhC n=129 T... 277 1e-73 UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Ta... 273 2e-72 UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Ta... 270 2e-71 UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Ta... 266 3e-70 UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Ta... 243 2e-63 UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax... 228 6e-59 UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax... 226 4e-58 UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subuni... 221 7e-57 UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burk... 221 1e-56 UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax... 213 4e-54 UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Rals... 205 8e-52 UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovo... 158 1e-37 UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp... 147 3e-34 UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteoba... 141 1e-32 UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechlor... 140 2e-32 UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgar... 136 4e-31 UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellula... 134 1e-30 UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammap... 134 2e-30 UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralston... 133 2e-30 UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polarom... 132 5e-30 UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax... 130 3e-29 UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenop... 124 2e-27 UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polarom... 121 1e-26 UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Vermine... 114 2e-24 Sequences not found previously or not previously below threshold: UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriav... 72 8e-12 UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudom... 52 9e-06 UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polarom... 44 0.002 UniRef50_A0BXR5 Chromosome undetermined scaffold_135, whole geno... 40 0.033 >UniRef50_O52222 Flagellar transcriptional activator flhC n=129 Tax=Proteobacteria RepID=FLHC_SALTY Length = 192 Score = 277 bits (708), Expect = 1e-73, Method: Composition-based stats. Identities = 180/192 (93%), Positives = 186/192 (96%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 MSEKSIVQEARDIQLAMELI LGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS Sbjct: 1 MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 TDWFMTWEQN+HASMFCNAWQFLLKTGLC+GVDAVIKAYRLYLEQCPQ EGPLLALTRA Sbjct: 61 TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA 120 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII 180 WTLVRFVESGLL+LSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLS++ ADII Sbjct: 121 WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII 180 Query: 181 PQLLDEQRVQAV 192 PQLLDEQ QAV Sbjct: 181 PQLLDEQIEQAV 192 >UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria RepID=C9XV32_CROTZ Length = 193 Score = 273 bits (698), Expect = 2e-72, Method: Composition-based stats. Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M++KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS Sbjct: 1 MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119 TDWFMTWEQN+HASMFCNAWQ+LL+TGLC+GVDAVIKAYRLYLEQCPQ + GPLLALTR Sbjct: 61 TDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDAGPLLALTR 120 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179 AWTLVRFV+SG+L+LS CN CGGNF+THAHQPVGSFACSLCQPPSRAVKRRKLS++ ADI Sbjct: 121 AWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADI 180 Query: 180 IPQLLDEQRVQAV 192 IPQLLDEQ QAV Sbjct: 181 IPQLLDEQVEQAV 193 >UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria RepID=FLHC_SERMA Length = 194 Score = 270 bits (691), Expect = 2e-71, Method: Composition-based stats. Identities = 160/193 (82%), Positives = 176/193 (91%), Gaps = 1/193 (0%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M EKSIVQEA+DIQLAMELI+LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS Sbjct: 2 MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 61 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQA-EEGPLLALTR 119 TDWFMTWEQN+H+SMF NA+ FL+K+G C+GV+AVIKAYRLYLEQCPQ E PLLALTR Sbjct: 62 TDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQAGEAPLLALTR 121 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179 AWTLVRFV+SG+LQLS+C+CCGG FITHAHQP+ F CSLCQPPSRAVKRRKLS ADI Sbjct: 122 AWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADI 181 Query: 180 IPQLLDEQRVQAV 192 IPQLLDEQ +A+ Sbjct: 182 IPQLLDEQVKRAI 194 >UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria RepID=FLHC_XENNE Length = 194 Score = 266 bits (680), Expect = 3e-70, Method: Composition-based stats. Identities = 151/194 (77%), Positives = 168/194 (86%), Gaps = 2/194 (1%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M EKSIVQEA+DIQLAMELITLGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS Sbjct: 1 MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQ--AEEGPLLALT 118 TDWFMTWEQN+H+SMF NA++FLLK+G C GV+ V+KAYRLYLEQCP + P+LALT Sbjct: 61 TDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPGNNGDAPILALT 120 Query: 119 RAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178 RAWTLVRFV+SG+LQ + C CCGG FITHAHQPV SF CSLCQPPSRAVK+RKLS PAD Sbjct: 121 RAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPAD 180 Query: 179 IIPQLLDEQRVQAV 192 QLLD +A+ Sbjct: 181 TNSQLLDGFAQKAM 194 >UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales RepID=A9ACW3_BURM1 Length = 198 Score = 243 bits (621), Expect = 2e-63, Method: Composition-based stats. Identities = 104/171 (60%), Positives = 131/171 (76%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M+ KS+V E ++I LA+ELI LGARLQ+LE+ET LSR RLIKLYKEL+G PPKGMLPFS Sbjct: 15 MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS 74 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 TDWFMTW+ N+H+S+F N ++F+ G C + A++KAYRLYLE + + L+LTRA Sbjct: 75 TDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRA 134 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 WTLVRF +SG+LQ++ C CGG+F+ HAH P F C LCQPPSRA K RK Sbjct: 135 WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK 185 >UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LMQ4_RALME Length = 213 Score = 228 bits (582), Expect = 6e-59, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 128/188 (68%), Gaps = 1/188 (0%) Query: 2 SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61 + KS+++E + +LA+EL+ LGARLQ+LESE +SR RL +LYKELRG PPKG LP S Sbjct: 3 TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSP 62 Query: 62 DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121 +WF+TW NVHAS+F +A++FL+ G + + ++ AYRLY+E E L+ TRAW Sbjct: 63 EWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAW 122 Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD-II 180 T++RF++SG L S+C CCGG+F+ H + +F C LC PP RA K +KL+ + ++ Sbjct: 123 TMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPFVV 182 Query: 181 PQLLDEQR 188 P+ L + Sbjct: 183 PEDLQQTI 190 >UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae RepID=Q2NX28_SODGM Length = 196 Score = 226 bits (575), Expect = 4e-58, Method: Composition-based stats. Identities = 111/179 (62%), Positives = 140/179 (78%), Gaps = 1/179 (0%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M KSI+QE+RDIQLAMELI LGARL +LE+ET LSR RL++LYKE++G+P PKG+LPFS Sbjct: 1 MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119 DWF++WEQN+H+S F NA+ L++ G ++A+IKAYRLYLE CPQ ++ GPLL LTR Sbjct: 61 ADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDGGPLLGLTR 120 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178 AW L+RF++S LL + C CGG FIT+A P +F CS C PPSRAVK+RKLS AD Sbjct: 121 AWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD 179 >UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subunit n=2 Tax=Nitrosomonas RepID=Q0AI30_NITEC Length = 191 Score = 221 bits (564), Expect = 7e-57, Method: Composition-based stats. Identities = 86/171 (50%), Positives = 116/171 (67%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M KSI+ E + IQLA EL+ LGARLQ+LE T LSR RL+KLYKE++G PPKGMLP+S Sbjct: 1 MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 DWF W+ N+H+S+F N + ++ + +DA+IK+Y+LYLE +L+ TRA Sbjct: 61 EDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRA 120 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 WTLVRFVES +L ++SC C GNF+ H+ + C LC PSRA K ++ Sbjct: 121 WTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR 171 >UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burkholderiales RepID=Q0K2R3_RALEH Length = 203 Score = 221 bits (562), Expect = 1e-56, Method: Composition-based stats. Identities = 88/174 (50%), Positives = 115/174 (66%) Query: 3 EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62 KS++Q+ I+LA+E+I LGARLQ+LESE L R RLI+LYKEL G PPKGMLPFSTD Sbjct: 27 GKSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTD 86 Query: 63 WFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWT 122 WF++W N HASM A++F+ G +G+ AV+ +YR+Y EQ E L+ TRAWT Sbjct: 87 WFVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWT 146 Query: 123 LVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNP 176 LVRF E G+L+L+ C C G ++ A + C LC PP+RA K RK + Sbjct: 147 LVRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRKPAPAA 200 >UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia RepID=B2TE01_BURPP Length = 189 Score = 213 bits (541), Expect = 4e-54, Method: Composition-based stats. Identities = 86/165 (52%), Positives = 117/165 (70%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M ++S+ ++A+++ A+ LI LGAR+Q+LESE LSR R+I+LY+E++G PPKGMLPFS Sbjct: 1 MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS 60 Query: 61 TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120 DW+MTW N+HAS+F N + FL C+ +DA+ K YRLYLE C +E P+L LTRA Sbjct: 61 ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA 120 Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165 WTLVRF ++ +LQL+ C C G F+ H H + C CQPPSR Sbjct: 121 WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR 165 >UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46TH1_RALEJ Length = 210 Score = 205 bits (521), Expect = 8e-52, Method: Composition-based stats. Identities = 85/160 (53%), Positives = 112/160 (70%) Query: 2 SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61 +S +Q+A D QLA+ELI LGAR Q++E+E LSR R+ +LY+EL G PPKGMLPFS Sbjct: 9 PARSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSA 68 Query: 62 DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121 DWF+TW N HAS + +++ + G+ AV+ +YR+Y E E L++ TR W Sbjct: 69 DWFVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFW 128 Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 TLVRF E GLLQLS+C CCGG F+THAH+P+ SF C+LCQ Sbjct: 129 TLVRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ 168 >UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovorax RepID=A1W669_ACISJ Length = 220 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60 M I Q R +QLA + LGAR++ + T L L+ L PP G P S Sbjct: 1 MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNS 59 Query: 61 TDWFMTWE--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALT 118 +W+ Q + AS+ ++ + G +A++ AYR Y P ++ Sbjct: 60 REWYHRANLVQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMYR---PPPRISFD 115 Query: 119 RAWTLVRFVE------SGLLQLSSCNCCGGNFI-THAHQPVGSFACSLCQPPSRAVKRRK 171 RA+ L E + +L+SC+ C F+ T A + C CQ R + + Sbjct: 116 RAFDLAAHTEGLWIAKAPNFRLASCSRCDSEFLDTFAGADTSARPCPFCQLLDRHARDPR 175 Query: 172 LSQNPAD 178 L+ + A+ Sbjct: 176 LTASFAE 182 >UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEH2_9ENTR Length = 176 Score = 147 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 7/165 (4%) Query: 3 EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62 + ++V++ L +++ LG R +++ S + L KE S G L S Sbjct: 2 KAALVRDEDKFALTQKMVKLGFRRKIIVHSLNASDRVIDFLRKEFHLSDVSIGRLKHSET 61 Query: 63 WFMTWEQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLEQ----CPQAEEGPLLAL 117 T + V A+ F + + K + + V+ A+ +Y E P+ ++ Sbjct: 62 LLNTTHKKVEATNFMSIYLRRSKDPNNSDNIVDVVSAFEIYRELNLKFRPEEASKVMIDA 121 Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFIT--HAHQPVGSFACSLC 160 AWTL R + +++ C C +FI+ +P C C Sbjct: 122 NEAWTLARDFRAEEIRMVRCFRCDLSFISPQSCDRPRKKHICPFC 166 >UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteobacteria RepID=A3GZH1_VIBCH Length = 177 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 7 VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMT 66 + ++ A LI G R ++ +T L + +L+KE+ G P G LP S + Sbjct: 5 LSKSELFTRASLLIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKS 64 Query: 67 WEQNVHASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGP-----LLALTR 119 V S+ + + + +DA++KAY YL +A+ L + Sbjct: 65 RRALVEGSLLMALYVNIGGDNVYKQLNIDALMKAYDAYLVARKEADLPAEIPWKKLTINE 124 Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 W L R + S L L C CG ++T + Q + C +C+ Sbjct: 125 GWVLARDLRSQLASLHRC-RCGSLYLTVSQQRI-QLKCPVCE 164 >UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica RCB RepID=Q47DP0_DECAR Length = 212 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%) Query: 8 QEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTW 67 + R +QLA +L LGARL+ + T + ++ L+ P+G P S +W+ Sbjct: 7 RHLRAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFP-DARTIPRGRAPDSAEWYHGA 65 Query: 68 E--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125 A + + L GL G +A++ AYR Y ++L RA+ LV Sbjct: 66 NLILRTDACLIGARYCQLRNQGLATG-EALVFAYRAYQAATL---PPYRISLDRAFNLVS 121 Query: 126 FVE------SGLLQLSSCNCCGGNFITHAHQPVG-SFACSLCQPPSRAVKRRKLSQNP 176 +++ + L + +C CG FI C C+ R ++ + Sbjct: 122 YIDGIWLANAPALSVLTCPGCGCEFIAAVGTVAHPGEPCPFCKLLERFHLDHRIQASY 179 >UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgaris RepID=Q8L260_PROVU Length = 163 Score = 136 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 56/152 (36%), Gaps = 6/152 (3%) Query: 15 LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHAS 74 L ++ LG R ++ + + + L + +G L +T + + + ++ Sbjct: 12 LLKRMVALGFRKAIITTSLNAAERLVDTLKRNCNQEDNGRGRLKVATSFLSMKQDTIEST 71 Query: 75 MFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQ----CPQAEEGPLLALTRAWTLVRFVES 129 F + + K + + +I A+ ++ P+ ++ AW L R + Sbjct: 72 NFMTIYLRIAKDPEKVSDIRDIITAFEIFQNLHQKFRPRNSSDMIIDANAAWILARDYRT 131 Query: 130 GLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 +++ +C C ++I + C C Sbjct: 132 EEIKMVTCTHCNNHYI-SPYDEKPKHKCPFCD 162 >UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellular organisms RepID=A9ARR3_BURM1 Length = 401 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 14/174 (8%) Query: 7 VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65 + R+ A L+ G R S +L++ + + + E+ G+ P G P S WF+ Sbjct: 225 LPRDRNETYASALMAYGCRASTAASLFRLNQNAMRQRFFEMHGTSSPCGNTPNSLSWFVE 284 Query: 66 TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125 T +H ++F ++ L G A+I +Y + +++ R L R Sbjct: 285 TPTNRLHGTIFTWLYRAALAAGANA-PQALIATNDVYQQIFGGQH---AISVDRGCNLTR 340 Query: 126 FVESG-LLQLSSCNCCGGNFITHAHQPV----GSFACSLCQ----PPSRAVKRR 170 + + L ++ C C ++ ++ SF C C P R K R Sbjct: 341 AMAADNRLTIAPCRSCRTEYLVSNNETKIEMHHSFDCPACTGQLGPKRRGTKAR 394 >UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammaproteobacteria RepID=C4NV70_ECOLX Length = 183 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 14/168 (8%) Query: 16 AMELITLGARLQMLESETQLSRGRLIKLYKELR--GSPPPKGMLPF--STDWFMTWEQNV 71 A + G +++ ET L+ ++ +LY++L G + F + + Sbjct: 15 ARHMALAGYITKIIMIETGLTYKQVRRLYQDLERDGYTLERKSRTFRGGATLIHSHTSKI 74 Query: 72 HASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGPL------LALTRAWTL 123 AS+ + + + + A+ KA+R+Y + G +T AW L Sbjct: 75 QASLLMQLYFNIGGEAVLRSVNIKALNKAFRMYHAIRKEV-PGMKGARWAPFDITDAWCL 133 Query: 124 VRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 + SG L C+ C + T +Q C C+ R K Sbjct: 134 ASELRSGDAMLEVCDNCKCTYFTSVNQRTC-VECPFCKEQGRHGGGEK 180 >UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralstonia RepID=B2UCN2_RALPJ Length = 393 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 13/174 (7%) Query: 7 VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65 V A+ + LI L R + S + LY+++ G P G++P S+ W++ Sbjct: 221 VGRAQMERYTEALIGLRCRASSVASMFPGTAATARALYRQIHGESSPCGLMPSSSSWYVE 280 Query: 66 TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125 + + ++ + L N +A I A + L RA+ L R Sbjct: 281 SVSSRIQSTTLIWLYWSALA-ARANEPEAFITALDTVGRLF---GDAARLTPDRAFHLAR 336 Query: 126 FVESG-LLQLSSCNCCGGNFITHAHQPV----GSFACSLCQ---PPSRAVKRRK 171 V +G L +SSC C +++T P SF C C R K RK Sbjct: 337 SVSTGSDLSMSSCRTCSTHYLTCNTTPKIELAASFYCPSCTGALTAPRKGKPRK 390 >UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666 RepID=Q11ZG5_POLSJ Length = 197 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%) Query: 11 RDIQLAMELITLGARLQMLESETQLSRGRL--IKLYKELRGSPPPKGMLPFSTDWFMTWE 68 I EL++ AR + + ++Y E PP G P + + Sbjct: 19 EQITSIRELVSFRARPATIAQLVPHQYAEMAARRIY-ETSDLRPPGGTQPSCKQVVLMYR 77 Query: 69 QNVHASMFCNAWQFLLKTGLCNGV---DAVIKAYRLYLEQCPQA-EEGPLLALTRAWTLV 124 + S + C GV A++ YRLY + +E L++ + + Sbjct: 78 SLTYRSNLNALYTQFSDL-RCAGVAFESALVVVYRLYRRKAGFGIDEKQLISFDHWYVVA 136 Query: 125 RFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQ 182 +E+ +L C CG + H V S C C + A RK + ++P+ Sbjct: 137 LEIETRESRLHRCGACGSRNLLTKHISVTSIDCVFCDLLATA--NRKATSKADPMVPR 192 >UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia pickettii 12D RepID=C6BQC6_RALP1 Length = 185 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 11/177 (6%) Query: 1 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKE----LRGSPPPKGM 56 M + + L GAR + +++ G I ++E L G P GM Sbjct: 1 MKNTQLRFYIEHERRLKRLCEFGARPKTMQALLTPHGGVHIATFREIFTQLTGRTPKPGM 60 Query: 57 LPFST--DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL 114 P +F + S+ +++ L G + VDA+I+AY + E P E+ Sbjct: 61 SPSPDFGSFFQKPNRRFDCSLILHSYNKLCYLG-AHHVDALIEAYAFFRESTP-PEKSME 118 Query: 115 LALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 + RA L R +SG L+L+ C CC N + ++PV C +C + R++ Sbjct: 119 FSFERALMLARAFDSGELRLTECECCSSNHVHERNEPV---MCPVCNNGNFGGSRKR 172 >UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae RepID=D2TXU7_9ENTR Length = 173 Score = 124 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 18/163 (11%) Query: 15 LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKG-------MLPFSTDWFMTW 67 LA+E+I LG R ++ SE K G G L F+ Sbjct: 7 LAVEMIKLGFRKAIILSEIPSLSSSAFDCLKNEAGLS-GNGYDEKRLRRLKKVNRVFVDD 65 Query: 68 EQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLE----QCPQAEEGPL---LALTR 119 H S+F + + ++ ++ AY Y E C + + Sbjct: 66 NLKKHGSLFLYVYLIMASNPKNKMNIEELVSAYSSYRELYNVHCNSYNDTLKSEMIDANM 125 Query: 120 AWTLVRFVESGLLQLSSCNCCGGN--FITHAHQPVGSFACSLC 160 AW + S ++ L C C ++T V + C+ C Sbjct: 126 AWQIATAYRSDVIDLVGCFYCRNKYMYLTCNADTVCNMKCAFC 168 >UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VVD0_POLNA Length = 180 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 29/170 (17%) Query: 16 AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHAS 74 A+ + + AR ++ L++ ++K+ P G P + DW++ T ++ + Sbjct: 14 AVYMARMLARNPIIVHALGLTKREGETIWKKTNNRSSPSGQFPSNHDWYLETTDRRFQGA 73 Query: 75 MFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL----------------LALT 118 +F +Q A+ Y + +GP L + Sbjct: 74 LFILMYQK--ALTAMPRELALPHTYYHFSNITAGEWKGPKGQDVDGAFRNIESDYALPYS 131 Query: 119 RAWTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160 RA+ L+ + L + C C G ++ + G C LC Sbjct: 132 RAFNLIAGYHNEQNPQSRHTHLVVKCCKGCLGKYLARFDE--GGSKCPLC 179 >UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WPA9_VEREI Length = 183 Score = 114 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 29/177 (16%) Query: 9 EARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TW 67 + + + A + + AR ++ T LS K++ + G P G P WF+ + Sbjct: 6 DLQLYETAKVMAKMQARACVISRITGLSIADTRKIWHDEMGRSSPSGQQPNDDQWFLKSP 65 Query: 68 EQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC---------------PQAEEG 112 + +H ++ + K A AY Y Q+E+ Sbjct: 66 LRRMHGALILQLYARAQK--AMPPHAAFTHAYYHYARLTAGLAPRSTWQGDPAFRQSEDD 123 Query: 113 PLLALTRA-WTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160 ++ RA + + + + L LQ C CG ++ H + S C +C Sbjct: 124 YVIPFLRAHFLTLLYTDETLSDGQRKCNLQTRRCKSCGTLYLGHVEEV--SSKCPIC 178 >UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=Q5NV35_RALME Length = 392 Score = 72.4 bits (176), Expect = 8e-12, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 13/159 (8%) Query: 22 LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHASMFCNAW 80 G R + + S S Y+ + G P G P S WF+ T + V ++ + Sbjct: 237 FGCRAKSVSSLFNTSLEVARDAYRRIHGRSSPSGQPPSSLTWFIETPPRRVQSTFQMWLF 296 Query: 81 QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVE-SGLLQLSSCNC 139 + + + ++ + A + + + R+ L R + S L + C Sbjct: 297 RSAIARE-VSTPESFVAAIDI---NRTFFADDCKVPPERSMHLARSMAMSEELAVWPCRK 352 Query: 140 CGGNFITHAH----QPVGSFACSLC---QPPSRAVKRRK 171 CG ++ + + SF C C +R RR+ Sbjct: 353 CGTPYLASNSSDKIELLHSFTCPCCNGTLTATRGGNRRR 391 >UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudomonas RepID=B7XGS9_PSEPU Length = 344 Score = 52.4 bits (124), Expect = 9e-06, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 13/135 (9%) Query: 16 AMELITLGARLQMLESETQLSRGRLIK----LYKELRGSPPPKGM--LPFSTDWFMTWEQ 69 A EL+ + +++ T L+ +++ L +++ G P T E Sbjct: 196 ATELLQQKLQPKLVAQWTGLNADEVVRMKRSLLRDIPLVQSQSGRIQAPNKT----LAES 251 Query: 70 NVHASMFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQCPQAEEGP--LLALTRAWTLVRF 126 +H+ ++ ++ L AV+ A+R Y+E C +++ + + L Sbjct: 252 PLHSLLYLTIYRLLADNPLRRTNARAVVAAHREYVELCRAVGIEASDMISPSNGYQLSNA 311 Query: 127 VESGLLQLSSCNCCG 141 +++G + L+ C+ C Sbjct: 312 MKTGDITLTPCSKCK 326 >UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666 RepID=Q120F9_POLSJ Length = 237 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 13/174 (7%) Query: 6 IVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65 +++ + QL +L R Q +++ RL ++ E+ P G + + Sbjct: 39 LIRLTQRTQLIKDLTGTDIRPQRIKAAI---DKRLEEMGVEI-QRPRGSGQTYTAKGFLS 94 Query: 66 TWEQNVHASMFCNAWQFLLKTGLCNGVD-----AVIKAYRLYLEQCP---QAEEGPLLAL 117 A+ G D A+ K YL C + +E ++ Sbjct: 95 KMADKYDAAYLLGLHFGANGPGSLATFDTNLGTALDKRMETYLRYCSDMYERQEDASISF 154 Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171 L+ +++ + + +C C +++ V +C +C VK K Sbjct: 155 ETYIVLIEGIKNHEVPMHTCKDCSTSYVWPVGSYV-RHSCPVCAVHQHDVKAAK 207 >UniRef50_A0BXR5 Chromosome undetermined scaffold_135, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0BXR5_PARTE Length = 496 Score = 40.5 bits (93), Expect = 0.033, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 132 LQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQL 183 L SC+ C +F HQ S C LC +R V+ RK ++ QL Sbjct: 50 LDPISCDSCMNHFCKRCHQQKQSMKCPLC---NRQVETRKAFPLLRQLLSQL 98 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.132 0.356 Lambda K H 0.267 0.0404 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,049,243,022 Number of Sequences: 3077464 Number of extensions: 39113950 Number of successful extensions: 126398 Number of sequences better than 1.0e-01: 28 Number of HSP's better than 0.1 without gapping: 51 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 126254 Number of HSP's gapped (non-prelim): 70 length of query: 192 length of database: 1,040,396,356 effective HSP length: 122 effective length of query: 70 effective length of database: 664,945,748 effective search space: 46546202360 effective search space used: 46546202360 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 89 (38.9 bits)