BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (137 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P28632 DNA polymerase III subunit psi n=146 Tax=Enterob... 278 3e-74 UniRef50_C6CDZ2 DNA polymerase III psi subunit n=2 Tax=Enterobac... 145 4e-34 UniRef50_C4K3W1 DNA polymerase III, psi subunit n=1 Tax=Candidat... 134 1e-30 UniRef50_C8QB60 DNA polymerase III psi subunit n=1 Tax=Pantoea s... 117 1e-25 UniRef50_Q7MZN1 DNA polymerase III, psi subunit n=2 Tax=Photorha... 114 8e-25 UniRef50_Q1LSL4 DNA polymerase III, psi subunit n=1 Tax=Baumanni... 99 4e-20 UniRef50_D2TW28 DNA polymerase III subunit psi n=1 Tax=Arsenopho... 98 7e-20 UniRef50_B4EWW3 DNA polymerase III, psi subunit n=2 Tax=Proteus ... 89 3e-17 UniRef50_C6APC7 DNA polymerase III subunit psi n=2 Tax=Aggregati... 88 8e-17 UniRef50_D1P6I5 DNA polymerase III, psi subunit n=5 Tax=Enteroba... 82 6e-15 UniRef50_Q65S64 Putative uncharacterized protein n=1 Tax=Mannhei... 79 3e-14 UniRef50_Q493T1 DNA polymerase III, psi subunit n=1 Tax=Candidat... 77 2e-13 UniRef50_P43750 DNA polymerase III subunit psi n=17 Tax=Pasteure... 74 1e-12 UniRef50_A6VMV3 DNA polymerase III psi subunit n=1 Tax=Actinobac... 69 4e-11 UniRef50_C9PMP3 DNA polymerase III subunit psi n=1 Tax=Pasteurel... 64 1e-09 UniRef50_B0UW01 DNA polymerase III psi subunit n=2 Tax=Histophil... 64 2e-09 UniRef50_D0I7Y0 DNA polymerase III psi subunit n=1 Tax=Grimontia... 64 2e-09 UniRef50_A6F6D4 DNA polymerase III, psi subunit n=1 Tax=Moritell... 62 6e-09 UniRef50_D0LZU9 DNA polymerase III psi subunit n=7 Tax=Vibrio Re... 61 1e-08 UniRef50_C9PKT3 DNA polymerase III psi subunit n=4 Tax=Vibrio Re... 59 4e-08 UniRef50_Q7MI30 DNA polymerase III, psi subunit n=12 Tax=Vibrion... 58 1e-07 UniRef50_Q6LUI1 Putative DNA polymerase III, psi subunit n=4 Tax... 58 1e-07 UniRef50_B5FA91 DNA polymerase III, psi subunit n=3 Tax=Aliivibr... 56 4e-07 UniRef50_Q7VQL8 DNA polymerase III, psi subunit n=1 Tax=Candidat... 52 6e-06 UniRef50_B3GZF2 DNA polymerase III psi subunit protein n=9 Tax=P... 49 5e-05 UniRef50_A5F922 DNA polymerase III, psi subunit n=30 Tax=Vibrio ... 49 7e-05 UniRef50_A1SZK3 Putative DNA polymerase III, psi subunit n=1 Tax... 42 0.007 UniRef50_A6D233 DNA polymerase III subunit psi n=1 Tax=Vibrio sh... 41 0.013 UniRef50_Q1ZHY6 DNA polymerase III subunit psi n=1 Tax=Psychromo... 41 0.013 >UniRef50_P28632 DNA polymerase III subunit psi n=146 Tax=Enterobacteriaceae RepID=HOLD_ECOLI Length = 137 Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA Sbjct: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA Sbjct: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 Query: 121 LWQQICTYEHDFFPRND 137 LWQQICTYEHDFFPRND Sbjct: 121 LWQQICTYEHDFFPRND 137 >UniRef50_C6CDZ2 DNA polymerase III psi subunit n=2 Tax=Enterobacteriaceae RepID=C6CDZ2_DICDC Length = 145 Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/133 (54%), Positives = 95/133 (71%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 M SRRDW LQQLG+TQW LRRP AL+GEIA+ +P+ VRL++VA+ LPA DPL+ DVLR+ Sbjct: 1 MASRRDWLLQQLGMTQWVLRRPAALRGEIAVNLPSAVRLLIVADPLPANDDPLLLDVLRS 60 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 L ++P+Q LTP++ AMLP+ HC+ W G +G Q+ SPAL +L N A+ A Sbjct: 61 LALAPEQSYSLTPQQAAMLPEPIHCHCWWQGVAPSREPDGVQLTSPALAELSYNAGAKRA 120 Query: 121 LWQQICTYEHDFF 133 LWQQI +EH+F Sbjct: 121 LWQQIYHHEHNFH 133 >UniRef50_C4K3W1 DNA polymerase III, psi subunit n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3W1_HAMD5 Length = 144 Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 61/131 (46%), Positives = 85/131 (64%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 S RD LQQLGITQW L+ P QGE+ + + ++R ++V + LPA + L+ DVL+AL Sbjct: 2 SNRDRLLQQLGITQWVLKHPSVFQGEMFLQLTENIRFIIVGDPLPAYDNDLIKDVLQALR 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALW 122 + P+QV L P ++ M P+ + C+SWRLG E LSL G Q+ SP D N A+ ALW Sbjct: 62 LEPNQVYFLMPFQLKMFPKNTRCHSWRLGVRESLSLIGVQLYSPKWDDFYQNGKAKHALW 121 Query: 123 QQICTYEHDFF 133 +QIC +E DF+ Sbjct: 122 KQICDHETDFY 132 >UniRef50_C8QB60 DNA polymerase III psi subunit n=1 Tax=Pantoea sp. At-9b RepID=C8QB60_9ENTR Length = 125 Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 57/122 (46%), Positives = 76/122 (62%) Query: 12 LGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQL 71 +GITQ+ LRRP LQGEIA+ + RLV+VA PAL +PLV DVLR L + P QV+ L Sbjct: 1 MGITQYQLRRPRVLQGEIAVRLTPDTRLVLVAEHAPALHEPLVRDVLRTLNLQPAQVMTL 60 Query: 72 TPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQICTYEHD 131 TPE++ MLP+ C W LG D G A+ A +L ++ A+ ALWQQ+C ++ Sbjct: 61 TPEQLQMLPEQVDCAGWLLGVDSSHPFNGVTFATAAFNELISSGAAKRALWQQMCNHDSH 120 Query: 132 FF 133 F Sbjct: 121 LF 122 >UniRef50_Q7MZN1 DNA polymerase III, psi subunit n=2 Tax=Photorhabdus RepID=Q7MZN1_PHOLL Length = 137 Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 58/132 (43%), Positives = 79/132 (59%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 M +RRD L QLGITQW+LR P LQGE+A+ +P RL+++ ND LT+ L+ D+ A Sbjct: 1 MVTRRDRLLAQLGITQWTLRNPTVLQGELAVHLPDTTRLLIITNDHIDLTNSLLIDIFTA 60 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 + + V +T +AMLP+ C W LG D LS G + SPAL DL + A+ + Sbjct: 61 MGLDKSSVYCITTNNVAMLPEQVKCPYWLLGVDITLSWPGISLRSPALNDLYCDGQAKRS 120 Query: 121 LWQQICTYEHDF 132 LWQQI +E F Sbjct: 121 LWQQISQHEQHF 132 >UniRef50_Q1LSL4 DNA polymerase III, psi subunit n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LSL4_BAUCH Length = 135 Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 80/131 (61%), Gaps = 2/131 (1%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQG--EIAIAIPAHVRLVMVANDLPALTDPLVSDVL 58 M + + ++QLGI QW LR P L E+ + PA +R ++VA+ LP + PL+SDV+ Sbjct: 1 MVNNINNYVKQLGIIQWILRYPPVLHSKEELVVLPPAKIRWLLVADQLPLINHPLISDVI 60 Query: 59 RALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTAR 118 R++ + P+Q+ +T +++ MLP+ S + W LG + +G + +P+L+ LR N A+ Sbjct: 61 RSMALIPEQLFMITSKQVMMLPKYSFYHCWWLGVIAIRNFKGISLFTPSLSVLRNNAVAK 120 Query: 119 AALWQQICTYE 129 LW+QI Y+ Sbjct: 121 RDLWRQIMNYQ 131 >UniRef50_D2TW28 DNA polymerase III subunit psi n=1 Tax=Arsenophonus nasoniae RepID=D2TW28_9ENTR Length = 136 Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 81/133 (60%) Query: 5 RDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVS 64 RD L+ +GI QW+LR P L+GE A++IP +LV++AN+ L + LV D+LRA+ + Sbjct: 4 RDQLLKHMGIVQWTLRNPTVLRGEHAVSIPDSTQLVIIANERIDLDNLLVKDILRAMQID 63 Query: 65 PDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQ 124 QV L +++++LP+ + W LG +S + + + L ++ NP ++ ALW Q Sbjct: 64 SCQVCCLLTKEVSLLPKEVYWPCWILGKQLAVSSKKWVIHTLPLEEIYFNPQSKRALWAQ 123 Query: 125 ICTYEHDFFPRND 137 IC YE++F R + Sbjct: 124 ICQYENNFEFRTN 136 >UniRef50_B4EWW3 DNA polymerase III, psi subunit n=2 Tax=Proteus mirabilis RepID=B4EWW3_PROMH Length = 136 Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 3/133 (2%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 SR+D L QLGI QW LR+P L+GE ++ P RL+++ +D+ L + L SD+ + Sbjct: 2 SRKDRMLAQLGIRQWVLRKPAVLKGEHSVQFPDTTRLLIITDDVVDLNNGLFSDIFSTMG 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALW 122 + ++ +T E +++L W LGTD L + + SP+L L + A+ LW Sbjct: 62 IDKSEIYCITSEDVSLLTGSFTPACWLLGTDITLPAQYTSLRSPSLHQLYFDANAKRDLW 121 Query: 123 QQICTYEH-DFFP 134 +QI Y+H D FP Sbjct: 122 KQI--YQHEDHFP 132 >UniRef50_C6APC7 DNA polymerase III subunit psi n=2 Tax=Aggregatibacter RepID=C6APC7_AGGAN Length = 150 Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 8/129 (6%) Query: 4 RRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTV 63 RRD LQQ+GI+QW LRRP L G I IA+P H+RL++V+ L P+V DVLR+LT+ Sbjct: 14 RRDVLLQQMGISQWQLRRPDLLLGAINIAVPEHIRLIIVSQQ-NLLQQPVVQDVLRSLTL 72 Query: 64 SPDQVLQLTPEKIAMLPQGSHCNSWRLGTDE-------PLSLEGAQVASPALTDLRANPT 116 + +QVL +T E++ L + W L + PL S L + + NP Sbjct: 73 NSEQVLNITFEQLTYLQVNHEVSYWLLSKNTSKNDRTLPLQQPLNVWQSDDLEEFKQNPQ 132 Query: 117 ARAALWQQI 125 A+ WQ I Sbjct: 133 AKRQFWQTI 141 >UniRef50_D1P6I5 DNA polymerase III, psi subunit n=5 Tax=Enterobacteriaceae RepID=D1P6I5_9ENTR Length = 136 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 4/132 (3%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD L+Q+GITQW +R P L+GE + IP +L+++ ++ L L+ D+ + Sbjct: 2 TRRDRLLEQMGITQWMVRNPAVLRGERGVRIPESTKLIIITDENLDLNSQLLKDIFFTMD 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVA--SPALTDLRANPTARAA 120 + ++ + E++ ++P W LG + + EG++ SP L++L A+ A+ A Sbjct: 62 IDETDMVCINSEQLKLIPTPITIPCWVLGNE--IHPEGSKFTFISPVLSELIASSHAKQA 119 Query: 121 LWQQICTYEHDF 132 LW+QI Y+ +F Sbjct: 120 LWKQIYQYDENF 131 >UniRef50_Q65S64 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65S64_MANSM Length = 136 Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 8/133 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ+LGITQW LRRP L+G I IA+ H+RL+++A + D + DVLR+ Sbjct: 2 NRRDHLLQELGITQWQLRRPDVLKGAINIAVEEHIRLLVIAECTLSARDFFIQDVLRSAE 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPL--------SLEGAQVASPALTDLRAN 114 + L LT + A L N W L ++ + +L+ + +P L L+ + Sbjct: 62 IKLQDCLFLTFSQAAHLTVQHPVNYWLLSDEQGIIEQTLTFCTLQNSLWQTPDLPRLKLD 121 Query: 115 PTARAALWQQICT 127 A+ ALW+QI T Sbjct: 122 RRAKQALWKQIQT 134 >UniRef50_Q493T1 DNA polymerase III, psi subunit n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q493T1_BLOPB Length = 140 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 9 LQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLP-ALTDPLVSDVLRALTVSPDQ 67 Q+LGIT W LR P L I + +RLV+++ D+P +L DP + DV+RA+ ++P + Sbjct: 14 FQELGITLWKLRYPVVLDSINPIKLWPSLRLVLISPDVPISLNDPFIKDVIRAMQINPRE 73 Query: 68 VLQLTPE--KIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQI 125 V LT KI ++P W +GT +L + +PAL+ L+ + A+ LW+QI Sbjct: 74 VCALTTNQIKILIIPSEFSYYCWWIGTKVSNNLNSICLTTPALSILKCDIHAKRDLWRQI 133 >UniRef50_P43750 DNA polymerase III subunit psi n=17 Tax=Pasteurellaceae RepID=HOLD_HAEIN Length = 134 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 9/131 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ++GI+QW L RP LQG + I++ ++RL+ V+++ + + PL++DVL +L Sbjct: 2 NRRDLLLQEMGISQWELYRPEVLQGSVGISVAENIRLITVSDENIS-SSPLLADVLLSLN 60 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDE-------PLSLEGAQVA-SPALTDLRAN 114 + + L L ++I + W L + P + QV SP+ ++N Sbjct: 61 LKKENCLCLNYDQIQHMECKQPIRYWLLSENSDQIDRTLPFCKQAEQVYRSPSWQQFQSN 120 Query: 115 PTARAALWQQI 125 A+ ALWQQI Sbjct: 121 HQAKRALWQQI 131 >UniRef50_A6VMV3 DNA polymerase III psi subunit n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMV3_ACTSZ Length = 135 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 ++RD+ L ++GI QW L RP L+G + I I ++RL++++++LP + L+ D+LR++ Sbjct: 2 NKRDFILCEMGIIQWELVRPDVLKGAVNIPISENIRLIVISDNLPERQNCLLQDILRSVE 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDE-------PLSLEGAQV-ASPALTDLRAN 114 ++ + L I+ L W L ++ PL + ++ S LT L A+ Sbjct: 62 LNQSECLFTDFAHISHLNIRHPLKYWVLTENQEKIDRTLPLCKQAEKIWQSADLTRLSAD 121 Query: 115 PTARAALWQQIC 126 + ALW+QIC Sbjct: 122 GKLKRALWKQIC 133 >UniRef50_C9PMP3 DNA polymerase III subunit psi n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PMP3_9PAST Length = 138 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 8/133 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ++GITQW L+ P L+G + I + H+RL++V + A L+ DVL +L+ Sbjct: 2 NRRDLMLQEMGITQWQLKHPERLKGVVNIVLSEHIRLIIVCDSEIASNSALLKDVLLSLS 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLG-----TDEPLSLEGAQVASPALTD---LRAN 114 ++ + + + ++ L N W L D LSL + TD + + Sbjct: 62 LNEQEYICVDFQQAQHLKPTQKLNYWLLSENHEKIDRTLSLCHQANSIWQTTDWQQFKQD 121 Query: 115 PTARAALWQQICT 127 A+ LW+QI T Sbjct: 122 HQAKRQLWKQIQT 134 >UniRef50_B0UW01 DNA polymerase III psi subunit n=2 Tax=Histophilus somni RepID=B0UW01_HAES2 Length = 134 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 9/131 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTD-PLVSDVLRAL 61 +RRD LQ++GI+QW LR P L+G + +++ ++RL+M++ P L + P + D+ R+L Sbjct: 2 NRRDKLLQEMGISQWKLRHPEILKGLVNVSVAKNIRLIMISEQ-PVLKEQPFLQDIFRSL 60 Query: 62 TVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPL---SLEGAQV----ASPALTDLRAN 114 + + L + + + L W L D+ +L Q S L L+ + Sbjct: 61 ELMKEDCLCIDFDFLPYLQVEHEVIYWLLTNDQQKIDRTLSDKQYMPCWKSNELERLKQS 120 Query: 115 PTARAALWQQI 125 P + WQQI Sbjct: 121 PQEKRQFWQQI 131 >UniRef50_D0I7Y0 DNA polymerase III psi subunit n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I7Y0_VIBHO Length = 131 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 5/126 (3%) Query: 8 QLQQLGITQWSLRRPGALQGEI--AIAIPAHVRLVMVANDLPALTDP-LVSDVLRALTVS 64 +L+++GIT W +RRP I++P +L++V+ +P+ D L VL ++ ++ Sbjct: 6 RLKEMGITVWDIRRPECFPDVTPKTISLPESCQLLLVSEHVPSGQDAWLFGKVLASMKLT 65 Query: 65 PDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQ-VASPALTDLRANPTARAALWQ 123 P+Q L L P+ + +L + W G +SL+G + SP+L L + A+ LWQ Sbjct: 66 PEQALHLPPQALGLLGKHQLVWCWFAGVSA-VSLDGVNTLTSPSLAALDKDQGAKKGLWQ 124 Query: 124 QICTYE 129 QI YE Sbjct: 125 QIKRYE 130 >UniRef50_A6F6D4 DNA polymerase III, psi subunit n=1 Tax=Moritella sp. PE36 RepID=A6F6D4_9GAMM Length = 133 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 7/133 (5%) Query: 1 MTSRRDWQLQQLGITQWSLRRPG-----ALQGEIAIAIPAHVRLVMVANDLPALTDPLVS 55 M++ + LQQ+GIT W +P A Q E IA+P H +++++AND A + Sbjct: 1 MSNFSRYYLQQMGITLWQCHKPEQFPHLASQAE-KIALPKHCQILIIANDKLAPHSQFIK 59 Query: 56 DVLRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANP 115 +LR L + +Q +T E++ Q W +G + Q++SP L L + Sbjct: 60 QILRTLQLELNQSHIITEEELKYYYQTPKW-IWTIGCKQSDLAAKQQLSSPHLDVLLHSA 118 Query: 116 TARAALWQQICTY 128 A+ LWQQI +Y Sbjct: 119 QAKKQLWQQIVSY 131 >UniRef50_D0LZU9 DNA polymerase III psi subunit n=7 Tax=Vibrio RepID=D0LZU9_VIBSE Length = 136 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIA--IAIPAHVRLVMVANDLPA-LTDPLVSDV 57 M+ L ++GI+ W L P L G + I + + +L++++ P T L ++ Sbjct: 1 MSINEKQYLHEMGISTWELVHPDRLAGYQSPKIDLQSSCKLLLISPVCPENETAVLFENI 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L+++ ++ DQ L + PE+ +L Q W G + + + + SP L D+ N Sbjct: 61 LKSMKLTLDQALHIEPERFPLLGQHELEWVWFAGCEAEVLPDTKPLTSPLLQDVDGNTQQ 120 Query: 118 RAALWQQICTYEH 130 + ALWQQIC+Y + Sbjct: 121 KRALWQQICSYNN 133 >UniRef50_C9PKT3 DNA polymerase III psi subunit n=4 Tax=Vibrio RepID=C9PKT3_VIBFU Length = 136 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPA--HVRLVMVANDLPALTDPLVSD-V 57 M+ R+ L +GI W L P LQG P RLV+V++ P + L+ + V Sbjct: 1 MSDRQQHYLHAMGIQSWDLVHPERLQGYQPTLAPLDDECRLVLVSDTYPTAAEALLFERV 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L++ V + P ++A L W G + + ++ SPAL D+ + Sbjct: 61 LKSFHVPLAAARHVFPHQLAQLDLSGLAWIWLAGVEVDVDTSANRLTSPALADIDGHTQH 120 Query: 118 RAALWQQICTY 128 R LWQQIC+Y Sbjct: 121 RRDLWQQICSY 131 >UniRef50_Q7MI30 DNA polymerase III, psi subunit n=12 Tax=Vibrionales RepID=Q7MI30_VIBVY Length = 138 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQG-EI-AIAIPAHVRLVMVANDLP-ALTDPLVSDV 57 MT LQ++GI+ W L P + G E+ ++P +L+++A P + T V Sbjct: 6 MTENEKLYLQEMGISLWQLHHPERMMGYEMPTFSLPEECQLLLIAPSCPISQTALFFEKV 65 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTD-EPLSLEGAQVASPALTDLRANPT 116 L+++ + Q +TPE+++ L S W G +PL + + SP L + + Sbjct: 66 LKSMQLELSQARHITPEQLSTLEPHSLQWVWFAGCPVQPLPMVAKVLQSPELAQIDGHNE 125 Query: 117 ARAALWQQICTYE 129 R ALWQQI +YE Sbjct: 126 HRRALWQQIRSYE 138 >UniRef50_Q6LUI1 Putative DNA polymerase III, psi subunit n=4 Tax=Photobacterium RepID=Q6LUI1_PHOPR Length = 133 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Query: 3 SRRDWQ-LQQLGITQWSLRRPGALQGEIA--IAIPAHVRLVMVA-NDLPALTDPLVSDVL 58 +RD Q LQ++G+T W +R+P I +P +L+ + N+L L +L Sbjct: 2 KQRDIQVLQEMGLTYWQVRKPEFFPNMQVPVIDLPESCKLLFITDNELNEHDAWLFGRIL 61 Query: 59 RALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTAR 118 ++ ++P+Q L L E + + + W G + + S +L + +NP+++ Sbjct: 62 GSMKLTPEQALSLPLEAVEQVAEHHLTWCWFAGCQGAHPVGCQVLNSSSLQAMHSNPSSK 121 Query: 119 AALWQQICTYE 129 ALWQQIC+Y+ Sbjct: 122 KALWQQICSYD 132 >UniRef50_B5FA91 DNA polymerase III, psi subunit n=3 Tax=Aliivibrio RepID=B5FA91_VIBFM Length = 133 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 9 LQQLGITQWSLRRPGALQG--EIAIAIPAHVRLVMVANDLPALTDP-LVSDVLRALTVSP 65 L ++ I+ W +R+ +++P +L+ VA +P D L VL ++ +SP Sbjct: 9 LNEMDISVWQVRQTSYFPALENTTLSLPETCQLLFVAPAIPTERDAFLFGKVLASMKLSP 68 Query: 66 DQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQV-ASPALTDLRANPTARAALWQQ 124 +Q L L+ E + + + W G LEG ++ SP L+++ +N +R LW+Q Sbjct: 69 EQALFLSSESLEYIGEHHLDWCWFSGVSTT-ELEGVKILTSPLLSEMHSNTQSRRDLWRQ 127 Query: 125 ICTYEH 130 IC+Y++ Sbjct: 128 ICSYDN 133 >UniRef50_Q7VQL8 DNA polymerase III, psi subunit n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VQL8_BLOFL Length = 135 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 16/126 (12%) Query: 9 LQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQV 68 L++L IT W +R P L+ ++ + ++R ++++ +L DP V DV+RA+ V +V Sbjct: 7 LKRLDITLWKIRYPAILKKSESVQLLINLRFLIISGLFISLDDPFVQDVIRAMRVKNIEV 66 Query: 69 L---------QLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARA 119 + P K+ ++C W +G + G + + +L L+ + + Sbjct: 67 YIININEINNLILPVKVL-----NYC--WWVGVEVLCDFGGISLCTESLNVLKYDMKGKQ 119 Query: 120 ALWQQI 125 W QI Sbjct: 120 DFWYQI 125 >UniRef50_B3GZF2 DNA polymerase III psi subunit protein n=9 Tax=Pasteurellaceae RepID=B3GZF2_ACTP7 Length = 140 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 16/145 (11%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD L ++ I QW L +P L+G+ I + V+LV+V + L D+LR L Sbjct: 2 NRRDLLLNEMNIPQWVLTKPQVLKGDAQIRLDNAVKLVVVCEE-NHQASGLFLDILRTLQ 60 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASP----------ALTDLR 112 + P+Q L E+ L H W + ++ L+ ++A + DL Sbjct: 61 LQPNQYQWLDAEQARRLAFEHHPIFWLIQSE----LQAVEIAKKFANQTAWQHSSWKDL- 115 Query: 113 ANPTARAALWQQICTYEHDFFPRND 137 N T + LW+Q+ + F +D Sbjct: 116 TNVTTKRQLWRQMAAFCQHFEENHD 140 >UniRef50_A5F922 DNA polymerase III, psi subunit n=30 Tax=Vibrio RepID=A5F922_VIBC3 Length = 135 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 5/125 (4%) Query: 9 LQQLGITQWSLRRPGALQGEI--AIAIPAHVRLVMVANDLPALTDPLVSD-VLRALTVSP 65 L + I QW L P L G + RL++VAN P + L+ + +L++ + Sbjct: 8 LSAMDIQQWELIHPERLAGFQPRTQTLDHDCRLLLVANQPPQGAEILLLERILKSFQLEL 67 Query: 66 DQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEG-AQVASPALTDLRANPTARAALWQQ 124 V + P +++ L W G D PLS + Q+ SP L+D+ N R ALWQQ Sbjct: 68 SMVRYIAPIQLSQLAYTGLEWIWFAGCD-PLSHQAQKQLHSPRLSDIDGNTQYRRALWQQ 126 Query: 125 ICTYE 129 IC ++ Sbjct: 127 ICAHQ 131 >UniRef50_A1SZK3 Putative DNA polymerase III, psi subunit n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SZK3_PSYIN Length = 131 Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 9/134 (6%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIP--AHVRLVMVANDLPALTDPLVSDVL 58 M ++ LQ++GIT+W +R+P + + +H +L++VA+ PL+ +L Sbjct: 1 MKHQQALYLQEMGITRWQVRKPDLFPLSLNLCTIDLSHYKLLLVAST-ADFAHPLMPSIL 59 Query: 59 RALTVSPDQVLQLTPEKIAMLPQGSHCNSWR-LG-TDEPLSLEGAQV-ASPALTDLRANP 115 A + +V + ++ L W LG ++P G ++ S L L A+ Sbjct: 60 NAFNLKLSEVYCCSTDQFENLQGQLPELIWSTLGEINQP---HGHKLLTSSTLVQLAADA 116 Query: 116 TARAALWQQICTYE 129 A+ ALW+Q C + Sbjct: 117 NAKKALWKQFCAFN 130 >UniRef50_A6D233 DNA polymerase III subunit psi n=1 Tax=Vibrio shilonii AK1 RepID=A6D233_9VIBR Length = 143 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 18/138 (13%) Query: 8 QLQQLGITQWSLRRPGAL--QGEIAIAIPAHVRLVMVANDLPALTDPLV-SDVLRALTVS 64 +LQ +G+ W L P + + ++++ RL+ V++ P + L +L+A+ + Sbjct: 6 KLQLMGVQTWELTHPERIPVRSSPSLSLRPDCRLLFVSSVKPQGDNVLFYQKILKAMKLD 65 Query: 65 PDQVLQLTPEKIAMLPQGSHCNSW--------------RLGTDEPLSLEGAQVASPALTD 110 + L + PE++ L G H W +L + ++ SP L++ Sbjct: 66 LSETLHIVPEQLLSL-DGQHIPEWIWFAGEEQANERFAQLTQQYQFTSSPRKLVSPQLSN 124 Query: 111 LRANPTARAALWQQICTY 128 + N R ALW QI +Y Sbjct: 125 IDGNDMERRALWNQIRSY 142 >UniRef50_Q1ZHY6 DNA polymerase III subunit psi n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHY6_9GAMM Length = 132 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGA---LQGEIAIAIPAHVRLVMVANDLPALTDPLVSDV 57 M ++ LQ++GIT+W LR LQ ++ + + L++ A PL+ ++ Sbjct: 1 MQHKKALYLQEMGITRWLLRNGQGFTYLQTKLPLVLSTCQLLIICAEQ--DRVAPLLMNI 58 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWR-LGT-DEPLSLEGAQV-ASPALTDLRAN 114 L+A + +QV T + L W LG DE ++ G+ V SP L+ L + Sbjct: 59 LKAFNIKAEQVYYCTMSEFLQLKADLPALIWSTLGAIDENIT--GSHVLTSPPLSQLCLD 116 Query: 115 PTARAALWQQIC 126 + LW+Q C Sbjct: 117 ANKKKQLWKQYC 128 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P28632 DNA polymerase III subunit psi n=146 Tax=Enterob... 190 1e-47 UniRef50_C6CDZ2 DNA polymerase III psi subunit n=2 Tax=Enterobac... 182 5e-45 UniRef50_C4K3W1 DNA polymerase III, psi subunit n=1 Tax=Candidat... 176 2e-43 UniRef50_Q7MZN1 DNA polymerase III, psi subunit n=2 Tax=Photorha... 175 5e-43 UniRef50_B4EWW3 DNA polymerase III, psi subunit n=2 Tax=Proteus ... 166 1e-40 UniRef50_D2TW28 DNA polymerase III subunit psi n=1 Tax=Arsenopho... 166 2e-40 UniRef50_C8QB60 DNA polymerase III psi subunit n=1 Tax=Pantoea s... 158 5e-38 UniRef50_D1P6I5 DNA polymerase III, psi subunit n=5 Tax=Enteroba... 155 6e-37 UniRef50_D0LZU9 DNA polymerase III psi subunit n=7 Tax=Vibrio Re... 149 3e-35 UniRef50_Q1LSL4 DNA polymerase III, psi subunit n=1 Tax=Baumanni... 148 4e-35 UniRef50_Q7MI30 DNA polymerase III, psi subunit n=12 Tax=Vibrion... 144 9e-34 UniRef50_Q6LUI1 Putative DNA polymerase III, psi subunit n=4 Tax... 142 4e-33 UniRef50_C9PKT3 DNA polymerase III psi subunit n=4 Tax=Vibrio Re... 141 5e-33 UniRef50_Q65S64 Putative uncharacterized protein n=1 Tax=Mannhei... 140 2e-32 UniRef50_D0I7Y0 DNA polymerase III psi subunit n=1 Tax=Grimontia... 140 2e-32 UniRef50_Q493T1 DNA polymerase III, psi subunit n=1 Tax=Candidat... 137 1e-31 UniRef50_A6VMV3 DNA polymerase III psi subunit n=1 Tax=Actinobac... 136 3e-31 UniRef50_B5FA91 DNA polymerase III, psi subunit n=3 Tax=Aliivibr... 136 3e-31 UniRef50_C9PMP3 DNA polymerase III subunit psi n=1 Tax=Pasteurel... 133 2e-30 UniRef50_P43750 DNA polymerase III subunit psi n=17 Tax=Pasteure... 132 3e-30 UniRef50_B0UW01 DNA polymerase III psi subunit n=2 Tax=Histophil... 132 3e-30 UniRef50_C6APC7 DNA polymerase III subunit psi n=2 Tax=Aggregati... 129 2e-29 UniRef50_A5F922 DNA polymerase III, psi subunit n=30 Tax=Vibrio ... 125 5e-28 UniRef50_A6F6D4 DNA polymerase III, psi subunit n=1 Tax=Moritell... 124 1e-27 UniRef50_B3GZF2 DNA polymerase III psi subunit protein n=9 Tax=P... 123 2e-27 UniRef50_Q7VQL8 DNA polymerase III, psi subunit n=1 Tax=Candidat... 118 6e-26 Sequences not found previously or not previously below threshold: UniRef50_A6D233 DNA polymerase III subunit psi n=1 Tax=Vibrio sh... 96 4e-19 UniRef50_A1SZK3 Putative DNA polymerase III, psi subunit n=1 Tax... 88 6e-17 UniRef50_Q1ZHY6 DNA polymerase III subunit psi n=1 Tax=Psychromo... 80 2e-14 UniRef50_A4SJ12 Putative uncharacterized protein n=1 Tax=Aeromon... 46 3e-04 UniRef50_C0N9N5 Putative uncharacterized protein n=1 Tax=Methylo... 44 0.002 UniRef50_Q487A6 Putative uncharacterized protein n=1 Tax=Colwell... 43 0.002 UniRef50_A8H7D7 Putative uncharacterized protein n=3 Tax=Shewane... 40 0.019 UniRef50_A9L016 Putative uncharacterized protein n=11 Tax=Shewan... 40 0.022 UniRef50_D0L132 Putative uncharacterized protein n=1 Tax=Halothi... 40 0.025 UniRef50_C4LBW9 Putative uncharacterized protein n=1 Tax=Tolumon... 39 0.050 UniRef50_Q087L7 Putative uncharacterized protein n=2 Tax=Shewane... 38 0.077 >UniRef50_P28632 DNA polymerase III subunit psi n=146 Tax=Enterobacteriaceae RepID=HOLD_ECOLI Length = 137 Score = 190 bits (482), Expect = 1e-47, Method: Composition-based stats. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA Sbjct: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA Sbjct: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 Query: 121 LWQQICTYEHDFFPRND 137 LWQQICTYEHDFFPRND Sbjct: 121 LWQQICTYEHDFFPRND 137 >UniRef50_C6CDZ2 DNA polymerase III psi subunit n=2 Tax=Enterobacteriaceae RepID=C6CDZ2_DICDC Length = 145 Score = 182 bits (461), Expect = 5e-45, Method: Composition-based stats. Identities = 72/133 (54%), Positives = 95/133 (71%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 M SRRDW LQQLG+TQW LRRP AL+GEIA+ +P+ VRL++VA+ LPA DPL+ DVLR+ Sbjct: 1 MASRRDWLLQQLGMTQWVLRRPAALRGEIAVNLPSAVRLLIVADPLPANDDPLLLDVLRS 60 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 L ++P+Q LTP++ AMLP+ HC+ W G +G Q+ SPAL +L N A+ A Sbjct: 61 LALAPEQSYSLTPQQAAMLPEPIHCHCWWQGVAPSREPDGVQLTSPALAELSYNAGAKRA 120 Query: 121 LWQQICTYEHDFF 133 LWQQI +EH+F Sbjct: 121 LWQQIYHHEHNFH 133 >UniRef50_C4K3W1 DNA polymerase III, psi subunit n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3W1_HAMD5 Length = 144 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 61/133 (45%), Positives = 85/133 (63%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 S RD LQQLGITQW L+ P QGE+ + + ++R ++V + LPA + L+ DVL+AL Sbjct: 2 SNRDRLLQQLGITQWVLKHPSVFQGEMFLQLTENIRFIIVGDPLPAYDNDLIKDVLQALR 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALW 122 + P+QV L P ++ M P+ + C+SWRLG E LSL G Q+ SP D N A+ ALW Sbjct: 62 LEPNQVYFLMPFQLKMFPKNTRCHSWRLGVRESLSLIGVQLYSPKWDDFYQNGKAKHALW 121 Query: 123 QQICTYEHDFFPR 135 +QIC +E DF+ Sbjct: 122 KQICDHETDFYFN 134 >UniRef50_Q7MZN1 DNA polymerase III, psi subunit n=2 Tax=Photorhabdus RepID=Q7MZN1_PHOLL Length = 137 Score = 175 bits (443), Expect = 5e-43, Method: Composition-based stats. Identities = 58/136 (42%), Positives = 80/136 (58%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 M +RRD L QLGITQW+LR P LQGE+A+ +P RL+++ ND LT+ L+ D+ A Sbjct: 1 MVTRRDRLLAQLGITQWTLRNPTVLQGELAVHLPDTTRLLIITNDHIDLTNSLLIDIFTA 60 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 + + V +T +AMLP+ C W LG D LS G + SPAL DL + A+ + Sbjct: 61 MGLDKSSVYCITTNNVAMLPEQVKCPYWLLGVDITLSWPGISLRSPALNDLYCDGQAKRS 120 Query: 121 LWQQICTYEHDFFPRN 136 LWQQI +E F + Sbjct: 121 LWQQISQHEQHFSINS 136 >UniRef50_B4EWW3 DNA polymerase III, psi subunit n=2 Tax=Proteus mirabilis RepID=B4EWW3_PROMH Length = 136 Score = 166 bits (422), Expect = 1e-40, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 71/130 (54%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 SR+D L QLGI QW LR+P L+GE ++ P RL+++ +D+ L + L SD+ + Sbjct: 2 SRKDRMLAQLGIRQWVLRKPAVLKGEHSVQFPDTTRLLIITDDVVDLNNGLFSDIFSTMG 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALW 122 + ++ +T E +++L W LGTD L + + SP+L L + A+ LW Sbjct: 62 IDKSEIYCITSEDVSLLTGSFTPACWLLGTDITLPAQYTSLRSPSLHQLYFDANAKRDLW 121 Query: 123 QQICTYEHDF 132 +QI +E F Sbjct: 122 KQIYQHEDHF 131 >UniRef50_D2TW28 DNA polymerase III subunit psi n=1 Tax=Arsenophonus nasoniae RepID=D2TW28_9ENTR Length = 136 Score = 166 bits (420), Expect = 2e-40, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 81/133 (60%) Query: 5 RDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVS 64 RD L+ +GI QW+LR P L+GE A++IP +LV++AN+ L + LV D+LRA+ + Sbjct: 4 RDQLLKHMGIVQWTLRNPTVLRGEHAVSIPDSTQLVIIANERIDLDNLLVKDILRAMQID 63 Query: 65 PDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQ 124 QV L +++++LP+ + W LG +S + + + L ++ NP ++ ALW Q Sbjct: 64 SCQVCCLLTKEVSLLPKEVYWPCWILGKQLAVSSKKWVIHTLPLEEIYFNPQSKRALWAQ 123 Query: 125 ICTYEHDFFPRND 137 IC YE++F R + Sbjct: 124 ICQYENNFEFRTN 136 >UniRef50_C8QB60 DNA polymerase III psi subunit n=1 Tax=Pantoea sp. At-9b RepID=C8QB60_9ENTR Length = 125 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 57/122 (46%), Positives = 76/122 (62%) Query: 12 LGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQL 71 +GITQ+ LRRP LQGEIA+ + RLV+VA PAL +PLV DVLR L + P QV+ L Sbjct: 1 MGITQYQLRRPRVLQGEIAVRLTPDTRLVLVAEHAPALHEPLVRDVLRTLNLQPAQVMTL 60 Query: 72 TPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQICTYEHD 131 TPE++ MLP+ C W LG D G A+ A +L ++ A+ ALWQQ+C ++ Sbjct: 61 TPEQLQMLPEQVDCAGWLLGVDSSHPFNGVTFATAAFNELISSGAAKRALWQQMCNHDSH 120 Query: 132 FF 133 F Sbjct: 121 LF 122 >UniRef50_D1P6I5 DNA polymerase III, psi subunit n=5 Tax=Enterobacteriaceae RepID=D1P6I5_9ENTR Length = 136 Score = 155 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 70/130 (53%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD L+Q+GITQW +R P L+GE + IP +L+++ ++ L L+ D+ + Sbjct: 2 TRRDRLLEQMGITQWMVRNPAVLRGERGVRIPESTKLIIITDENLDLNSQLLKDIFFTMD 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALW 122 + ++ + E++ ++P W LG + SP L++L A+ A+ ALW Sbjct: 62 IDETDMVCINSEQLKLIPTPITIPCWVLGNEIHPEGSKFTFISPVLSELIASSHAKQALW 121 Query: 123 QQICTYEHDF 132 +QI Y+ +F Sbjct: 122 KQIYQYDENF 131 >UniRef50_D0LZU9 DNA polymerase III psi subunit n=7 Tax=Vibrio RepID=D0LZU9_VIBSE Length = 136 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIA--IAIPAHVRLVMVANDLPA-LTDPLVSDV 57 M+ L ++GI+ W L P L G + I + + +L++++ P T L ++ Sbjct: 1 MSINEKQYLHEMGISTWELVHPDRLAGYQSPKIDLQSSCKLLLISPVCPENETAVLFENI 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L+++ ++ DQ L + PE+ +L Q W G + + + + SP L D+ N Sbjct: 61 LKSMKLTLDQALHIEPERFPLLGQHELEWVWFAGCEAEVLPDTKPLTSPLLQDVDGNTQQ 120 Query: 118 RAALWQQICTYEH 130 + ALWQQIC+Y + Sbjct: 121 KRALWQQICSYNN 133 >UniRef50_Q1LSL4 DNA polymerase III, psi subunit n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LSL4_BAUCH Length = 135 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 2/134 (1%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQG--EIAIAIPAHVRLVMVANDLPALTDPLVSDVL 58 M + + ++QLGI QW LR P L E+ + PA +R ++VA+ LP + PL+SDV+ Sbjct: 1 MVNNINNYVKQLGIIQWILRYPPVLHSKEELVVLPPAKIRWLLVADQLPLINHPLISDVI 60 Query: 59 RALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTAR 118 R++ + P+Q+ +T +++ MLP+ S + W LG + +G + +P+L+ LR N A+ Sbjct: 61 RSMALIPEQLFMITSKQVMMLPKYSFYHCWWLGVIAIRNFKGISLFTPSLSVLRNNAVAK 120 Query: 119 AALWQQICTYEHDF 132 LW+QI Y+ Sbjct: 121 RDLWRQIMNYQQYL 134 >UniRef50_Q7MI30 DNA polymerase III, psi subunit n=12 Tax=Vibrionales RepID=Q7MI30_VIBVY Length = 138 Score = 144 bits (363), Expect = 9e-34, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEI--AIAIPAHVRLVMVANDLP-ALTDPLVSDV 57 MT LQ++GI+ W L P + G ++P +L+++A P + T V Sbjct: 6 MTENEKLYLQEMGISLWQLHHPERMMGYEMPTFSLPEECQLLLIAPSCPISQTALFFEKV 65 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTD-EPLSLEGAQVASPALTDLRANPT 116 L+++ + Q +TPE+++ L S W G +PL + + SP L + + Sbjct: 66 LKSMQLELSQARHITPEQLSTLEPHSLQWVWFAGCPVQPLPMVAKVLQSPELAQIDGHNE 125 Query: 117 ARAALWQQICTYE 129 R ALWQQI +YE Sbjct: 126 HRRALWQQIRSYE 138 >UniRef50_Q6LUI1 Putative DNA polymerase III, psi subunit n=4 Tax=Photobacterium RepID=Q6LUI1_PHOPR Length = 133 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIA--IAIPAHVRLVMVAN-DLPALTDPLVSDV 57 M R LQ++G+T W +R+P I +P +L+ + + +L L + Sbjct: 1 MKQRDIQVLQEMGLTYWQVRKPEFFPNMQVPVIDLPESCKLLFITDNELNEHDAWLFGRI 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L ++ ++P+Q L L E + + + W G + + S +L + +NP++ Sbjct: 61 LGSMKLTPEQALSLPLEAVEQVAEHHLTWCWFAGCQGAHPVGCQVLNSSSLQAMHSNPSS 120 Query: 118 RAALWQQICTYE 129 + ALWQQIC+Y+ Sbjct: 121 KKALWQQICSYD 132 >UniRef50_C9PKT3 DNA polymerase III psi subunit n=4 Tax=Vibrio RepID=C9PKT3_VIBFU Length = 136 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAI--AIPAHVRLVMVANDLPALTDPL-VSDV 57 M+ R+ L +GI W L P LQG + RLV+V++ P + L V Sbjct: 1 MSDRQQHYLHAMGIQSWDLVHPERLQGYQPTLAPLDDECRLVLVSDTYPTAAEALLFERV 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L++ V + P ++A L W G + + ++ SPAL D+ + Sbjct: 61 LKSFHVPLAAARHVFPHQLAQLDLSGLAWIWLAGVEVDVDTSANRLTSPALADIDGHTQH 120 Query: 118 RAALWQQICTY 128 R LWQQIC+Y Sbjct: 121 RRDLWQQICSY 131 >UniRef50_Q65S64 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65S64_MANSM Length = 136 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 8/133 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ+LGITQW LRRP L+G I IA+ H+RL+++A + D + DVLR+ Sbjct: 2 NRRDHLLQELGITQWQLRRPDVLKGAINIAVEEHIRLLVIAECTLSARDFFIQDVLRSAE 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEP--------LSLEGAQVASPALTDLRAN 114 + L LT + A L N W L ++ +L+ + +P L L+ + Sbjct: 62 IKLQDCLFLTFSQAAHLTVQHPVNYWLLSDEQGIIEQTLTFCTLQNSLWQTPDLPRLKLD 121 Query: 115 PTARAALWQQICT 127 A+ ALW+QI T Sbjct: 122 RRAKQALWKQIQT 134 >UniRef50_D0I7Y0 DNA polymerase III psi subunit n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I7Y0_VIBHO Length = 131 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Query: 7 WQLQQLGITQWSLRRPGALQGEI--AIAIPAHVRLVMVANDLPALTD-PLVSDVLRALTV 63 +L+++GIT W +RRP I++P +L++V+ +P+ D L VL ++ + Sbjct: 5 QRLKEMGITVWDIRRPECFPDVTPKTISLPESCQLLLVSEHVPSGQDAWLFGKVLASMKL 64 Query: 64 SPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQ 123 +P+Q L L P+ + +L + W G + SP+L L + A+ LWQ Sbjct: 65 TPEQALHLPPQALGLLGKHQLVWCWFAGVSAVSLDGVNTLTSPSLAALDKDQGAKKGLWQ 124 Query: 124 QICTYEH 130 QI YE Sbjct: 125 QIKRYES 131 >UniRef50_Q493T1 DNA polymerase III, psi subunit n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q493T1_BLOPB Length = 140 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 7/132 (5%) Query: 1 MTSRRD----WQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLP-ALTDPLVS 55 +T+ R+ + Q+LGIT W LR P L I + +RLV+++ D+P +L DP + Sbjct: 2 LTNNRNKPHTFIFQELGITLWKLRYPVVLDSINPIKLWPSLRLVLISPDVPISLNDPFIK 61 Query: 56 DVLRALTVSPDQVLQLTPEKIAML--PQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRA 113 DV+RA+ ++P +V LT +I +L P W +GT +L + +PAL+ L+ Sbjct: 62 DVIRAMQINPREVCALTTNQIKILIIPSEFSYYCWWIGTKVSNNLNSICLTTPALSILKC 121 Query: 114 NPTARAALWQQI 125 + A+ LW+QI Sbjct: 122 DIHAKRDLWRQI 133 >UniRef50_A6VMV3 DNA polymerase III psi subunit n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMV3_ACTSZ Length = 135 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 8/132 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 ++RD+ L ++GI QW L RP L+G + I I ++RL++++++LP + L+ D+LR++ Sbjct: 2 NKRDFILCEMGIIQWELVRPDVLKGAVNIPISENIRLIVISDNLPERQNCLLQDILRSVE 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDE-------PLSLEGAQ-VASPALTDLRAN 114 ++ + L I+ L W L ++ PL + + S LT L A+ Sbjct: 62 LNQSECLFTDFAHISHLNIRHPLKYWVLTENQEKIDRTLPLCKQAEKIWQSADLTRLSAD 121 Query: 115 PTARAALWQQIC 126 + ALW+QIC Sbjct: 122 GKLKRALWKQIC 133 >UniRef50_B5FA91 DNA polymerase III, psi subunit n=3 Tax=Aliivibrio RepID=B5FA91_VIBFM Length = 133 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQG--EIAIAIPAHVRLVMVANDLPALTDP-LVSDV 57 M + L ++ I+ W +R+ +++P +L+ VA +P D L V Sbjct: 1 MPQQALQFLNEMDISVWQVRQTSYFPALENTTLSLPETCQLLFVAPAIPTERDAFLFGKV 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L ++ +SP+Q L L+ E + + + W G + SP L+++ +N + Sbjct: 61 LASMKLSPEQALFLSSESLEYIGEHHLDWCWFSGVSTTELEGVKILTSPLLSEMHSNTQS 120 Query: 118 RAALWQQICTYEH 130 R LW+QIC+Y++ Sbjct: 121 RRDLWRQICSYDN 133 >UniRef50_C9PMP3 DNA polymerase III subunit psi n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PMP3_9PAST Length = 138 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ++GITQW L+ P L+G + I + H+RL++V + A L+ DVL +L+ Sbjct: 2 NRRDLMLQEMGITQWQLKHPERLKGVVNIVLSEHIRLIIVCDSEIASNSALLKDVLLSLS 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTD-------EPLSLEGAQ-VASPALTDLRAN 114 ++ + + + ++ L N W L + L + + + + Sbjct: 62 LNEQEYICVDFQQAQHLKPTQKLNYWLLSENHEKIDRTLSLCHQANSIWQTTDWQQFKQD 121 Query: 115 PTARAALWQQICT 127 A+ LW+QI T Sbjct: 122 HQAKRQLWKQIQT 134 >UniRef50_P43750 DNA polymerase III subunit psi n=17 Tax=Pasteurellaceae RepID=HOLD_HAEIN Length = 134 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 9/133 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ++GI+QW L RP LQG + I++ ++RL+ V+++ + + PL++DVL +L Sbjct: 2 NRRDLLLQEMGISQWELYRPEVLQGSVGISVAENIRLITVSDENIS-SSPLLADVLLSLN 60 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDE-------PLSLEGAQVA-SPALTDLRAN 114 + + L L ++I + W L + P + QV SP+ ++N Sbjct: 61 LKKENCLCLNYDQIQHMECKQPIRYWLLSENSDQIDRTLPFCKQAEQVYRSPSWQQFQSN 120 Query: 115 PTARAALWQQICT 127 A+ ALWQQI Sbjct: 121 HQAKRALWQQIQQ 133 >UniRef50_B0UW01 DNA polymerase III psi subunit n=2 Tax=Histophilus somni RepID=B0UW01_HAES2 Length = 134 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ++GI+QW LR P L+G + +++ ++RL+M++ P + D+ R+L Sbjct: 2 NRRDKLLQEMGISQWKLRHPEILKGLVNVSVAKNIRLIMISEQPVLKEQPFLQDIFRSLE 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDE---PLSLEGAQ----VASPALTDLRANP 115 + + L + + + L W L D+ +L Q S L L+ +P Sbjct: 62 LMKEDCLCIDFDFLPYLQVEHEVIYWLLTNDQQKIDRTLSDKQYMPCWKSNELERLKQSP 121 Query: 116 TARAALWQQIC 126 + WQQI Sbjct: 122 QEKRQFWQQIQ 132 >UniRef50_C6APC7 DNA polymerase III subunit psi n=2 Tax=Aggregatibacter RepID=C6APC7_AGGAN Length = 150 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 8/131 (6%) Query: 4 RRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTV 63 RRD LQQ+GI+QW LRRP L G I IA+P H+RL++V+ L P+V DVLR+LT+ Sbjct: 14 RRDVLLQQMGISQWQLRRPDLLLGAINIAVPEHIRLIIVSQQ-NLLQQPVVQDVLRSLTL 72 Query: 64 SPDQVLQLTPEKIAMLPQGSHCNSWRLGTDE-------PLSLEGAQVASPALTDLRANPT 116 + +QVL +T E++ L + W L + PL S L + + NP Sbjct: 73 NSEQVLNITFEQLTYLQVNHEVSYWLLSKNTSKNDRTLPLQQPLNVWQSDDLEEFKQNPQ 132 Query: 117 ARAALWQQICT 127 A+ WQ I Sbjct: 133 AKRQFWQTIQQ 143 >UniRef50_A5F922 DNA polymerase III, psi subunit n=30 Tax=Vibrio RepID=A5F922_VIBC3 Length = 135 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 3/126 (2%) Query: 7 WQLQQLGITQWSLRRPGALQGEI--AIAIPAHVRLVMVANDLPALTDPLVSD-VLRALTV 63 L + I QW L P L G + RL++VAN P + L+ + +L++ + Sbjct: 6 HYLSAMDIQQWELIHPERLAGFQPRTQTLDHDCRLLLVANQPPQGAEILLLERILKSFQL 65 Query: 64 SPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQ 123 V + P +++ L W G D Q+ SP L+D+ N R ALWQ Sbjct: 66 ELSMVRYIAPIQLSQLAYTGLEWIWFAGCDPLSHQAQKQLHSPRLSDIDGNTQYRRALWQ 125 Query: 124 QICTYE 129 QIC ++ Sbjct: 126 QICAHQ 131 >UniRef50_A6F6D4 DNA polymerase III, psi subunit n=1 Tax=Moritella sp. PE36 RepID=A6F6D4_9GAMM Length = 133 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQ----GEIAIAIPAHVRLVMVANDLPALTDPLVSD 56 M++ + LQQ+GIT W +P IA+P H +++++AND A + Sbjct: 1 MSNFSRYYLQQMGITLWQCHKPEQFPHLASQAEKIALPKHCQILIIANDKLAPHSQFIKQ 60 Query: 57 VLRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPT 116 +LR L + +Q +T E++ Q W +G + Q++SP L L + Sbjct: 61 ILRTLQLELNQSHIITEEELKYYYQTPK-WIWTIGCKQSDLAAKQQLSSPHLDVLLHSAQ 119 Query: 117 ARAALWQQICTYEH 130 A+ LWQQI +Y Sbjct: 120 AKKQLWQQIVSYMQ 133 >UniRef50_B3GZF2 DNA polymerase III psi subunit protein n=9 Tax=Pasteurellaceae RepID=B3GZF2_ACTP7 Length = 140 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD L ++ I QW L +P L+G+ I + V+LV+V + L D+LR L Sbjct: 2 NRRDLLLNEMNIPQWVLTKPQVLKGDAQIRLDNAVKLVVVCEE-NHQASGLFLDILRTLQ 60 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQ------VASPALTDLRANPT 116 + P+Q L E+ L H W + ++ + + DL N T Sbjct: 61 LQPNQYQWLDAEQARRLAFEHHPIFWLIQSELQAVEIAKKFANQTAWQHSSWKDL-TNVT 119 Query: 117 ARAALWQQICTYEHDFFPRND 137 + LW+Q+ + F +D Sbjct: 120 TKRQLWRQMAAFCQHFEENHD 140 >UniRef50_Q7VQL8 DNA polymerase III, psi subunit n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VQL8_BLOFL Length = 135 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Query: 4 RRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTV 63 D L++L IT W +R P L+ ++ + ++R ++++ +L DP V DV+RA+ V Sbjct: 2 NVDVVLKRLDITLWKIRYPAILKKSESVQLLINLRFLIISGLFISLDDPFVQDVIRAMRV 61 Query: 64 SPDQVL--QLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAAL 121 +V + +LP W +G + G + + +L L+ + + Sbjct: 62 KNIEVYIININEINNLILPVKVLNYCWWVGVEVLCDFGGISLCTESLNVLKYDMKGKQDF 121 Query: 122 WQQICT 127 W QI Sbjct: 122 WYQIYR 127 >UniRef50_A6D233 DNA polymerase III subunit psi n=1 Tax=Vibrio shilonii AK1 RepID=A6D233_9VIBR Length = 143 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 16/136 (11%) Query: 9 LQQLGITQWSLRRPGALQ--GEIAIAIPAHVRLVMVANDLPALTDPLV-SDVLRALTVSP 65 LQ +G+ W L P + ++++ RL+ V++ P + L +L+A+ + Sbjct: 7 LQLMGVQTWELTHPERIPVRSSPSLSLRPDCRLLFVSSVKPQGDNVLFYQKILKAMKLDL 66 Query: 66 DQVLQLTPEKIAML-PQGSHCNSWRLGTDEPLSLEGA------------QVASPALTDLR 112 + L + PE++ L Q W G ++ ++ SP L+++ Sbjct: 67 SETLHIVPEQLLSLDGQHIPEWIWFAGEEQANERFAQLTQQYQFTSSPRKLVSPQLSNID 126 Query: 113 ANPTARAALWQQICTY 128 N R ALW QI +Y Sbjct: 127 GNDMERRALWNQIRSY 142 >UniRef50_A1SZK3 Putative DNA polymerase III, psi subunit n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SZK3_PSYIN Length = 131 Score = 88.4 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIA---IAIPAHVRLVMVANDLPALTDPLVSDV 57 M ++ LQ++GIT+W +R+P + I + H +L++VA+ PL+ + Sbjct: 1 MKHQQALYLQEMGITRWQVRKPDLFPLSLNLCTIDLS-HYKLLLVASTA-DFAHPLMPSI 58 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L A + +V + ++ L W + + S L L A+ A Sbjct: 59 LNAFNLKLSEVYCCSTDQFENLQGQLPELIWSTLGEINQPHGHKLLTSSTLVQLAADANA 118 Query: 118 RAALWQQICTYEH 130 + ALW+Q C + Sbjct: 119 KKALWKQFCAFNQ 131 >UniRef50_Q1ZHY6 DNA polymerase III subunit psi n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHY6_9GAMM Length = 132 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 1 MTSRRDWQLQQLGITQWSLRRPG---ALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDV 57 M ++ LQ++GIT+W LR LQ ++ + + +L+++ + PL+ ++ Sbjct: 1 MQHKKALYLQEMGITRWLLRNGQGFTYLQTKLPLVLS-TCQLLIICAEQ-DRVAPLLMNI 58 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSW-RLGTDEPLSLEGAQVASPALTDLRANPT 116 L+A + +QV T + L W LG + + SP L+ L + Sbjct: 59 LKAFNIKAEQVYYCTMSEFLQLKADLPALIWSTLGAIDENITGSHVLTSPPLSQLCLDAN 118 Query: 117 ARAALWQQICT 127 + LW+Q C Sbjct: 119 KKKQLWKQYCD 129 >UniRef50_A4SJ12 Putative uncharacterized protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SJ12_AERS4 Length = 169 Score = 46.4 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 50/138 (36%), Gaps = 31/138 (22%) Query: 5 RDWQLQQLGITQWSLRRPGALQGEIA-------------IAIPAHVRLVMVANDLPALTD 51 R L ++GI W LRRP L G + +P +L + A LP Sbjct: 37 RQHILARIGIQGWQLRRPQLLAGSRDEAAQTGQPDPRPHVDLP-TGKLWVRAPALP--DT 93 Query: 52 PLVSDVLRALTVSPDQVLQL--TPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALT 109 L+ D+ + L ++P +V L PE+ A W D SP Sbjct: 94 ALLHDICQLLGIAPHEVSLLQEMPEQAA------PPLLWLTEPDPRWPEALICPLSP--- 144 Query: 110 DLRANPTARAALWQQICT 127 + + ALWQQ+ Sbjct: 145 ----DAPHKRALWQQLRQ 158 >UniRef50_C0N9N5 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9N5_9GAMM Length = 162 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 28/151 (18%) Query: 1 MTSRRDWQLQQLGITQWSLRRP-------------GALQGEIAIAIPAHVRLVMVANDLP 47 ++ R+ + L +L I W LR + I + + L+M + ++ Sbjct: 3 LSKRQHFFLAELDIPVWELRETSLSTDAKIDDESTEYTPPALDIDLSPAIWLLMASTEMN 62 Query: 48 ALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSHCN-SWRLGTDEPLSLEGAQVASP 106 L +L+AL +S V + + L N + + L + P Sbjct: 63 DSEARLFDAMLKALKLSRRAVAVIDFQTFEALAGRDTDNKILLVMGETSLMPAALSLTQP 122 Query: 107 --------------ALTDLRANPTARAALWQ 123 +L D+ P +A +WQ Sbjct: 123 TLIQQNDSRWIATYSLQDMLQQPALKATVWQ 153 >UniRef50_Q487A6 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q487A6_COLP3 Length = 125 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 9/117 (7%) Query: 8 QLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQ 67 QL ++GI+ W R + + ++ + + + L +D+L A+ +S + Sbjct: 10 QLSEMGISLWQHRTCDTPKDTVQAQPEHYIDI----DLKYLASQQLFNDILLAIGLSIGE 65 Query: 68 VLQLTPEKIAMLPQGSHCNSWRLGTDE-PLSLEGAQVASPALTDLRANPTARAALWQ 123 + + L G + + + + Q+ +P +T+L +P + LWQ Sbjct: 66 INH----QSDHLDLGLFNWYFTATSSQNGIKWVEQQLFTPPITELSKSPALKKQLWQ 118 >UniRef50_A8H7D7 Putative uncharacterized protein n=3 Tax=Shewanella RepID=A8H7D7_SHEPA Length = 115 Score = 40.2 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 19/125 (15%) Query: 5 RDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLP-ALTDPLVSDVLRALTV 63 ++ L +GIT+W P A + V+V + P++ VL + Sbjct: 3 KNAYLDAMGITRWKKAIPQA-----------DIMTVLVNPLRIKDVDSPIIGIVLSLIGA 51 Query: 64 SPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQ 123 + A+ + W + + +S V++P + +L ++ A+ ALW Sbjct: 52 DVNHCRF------AVRAEVGSRVIWDMRGKQAVSGVDRVVSAP-INELESSVEAKRALWA 104 Query: 124 QICTY 128 + Y Sbjct: 105 NMQAY 109 >UniRef50_A9L016 Putative uncharacterized protein n=11 Tax=Shewanella RepID=A9L016_SHEB9 Length = 121 Score = 40.2 bits (93), Expect = 0.022, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 21/129 (16%) Query: 4 RRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPAL--TDPLVSDVLRAL 61 + L + +T W +R +++ ++ L +PL+ VL+ + Sbjct: 2 NKSAYLTAMNVTTWRVRDTKVKP------------YLVIWDENGELPEAEPLIDAVLKLI 49 Query: 62 TVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAAL 121 V ++ P W L + + S L DL A++AL Sbjct: 50 DVKREEC------DFDCEPHTGKQIVWDLRRHKVRPRTAW-LVSEPLADLLVGWQAKSAL 102 Query: 122 WQQICTYEH 130 WQQI + Sbjct: 103 WQQIYQWRE 111 >UniRef50_D0L132 Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L132_HALNC Length = 143 Score = 39.9 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 17/131 (12%) Query: 9 LQQLGITQWSLR--RPGALQGEIAI---------AIPAHVRLVMVANDLPALTDPLVSDV 57 L LGI QW LR PG L G + + A A R +V + A + V + Sbjct: 7 LHWLGIDQWVLRVPMPGHLSGSVTLLETDTAPSDAPAAEQRAALVYSPEIAHKEGFVGEP 66 Query: 58 LRALTV-----SPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLR 112 + + + + L LP G ++P + +L +LR Sbjct: 67 NQNTGLCFIAANGAEFSALVSAISRCLPPGKPEIHQSASDEQP-PSVYWNGQTWSLAELR 125 Query: 113 ANPTARAALWQ 123 + A+ ALW+ Sbjct: 126 RSGQAKRALWR 136 >UniRef50_C4LBW9 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBW9_TOLAT Length = 117 Score = 38.7 bits (89), Expect = 0.050, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 10/123 (8%) Query: 8 QLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQ 67 L+ + IT W LR P L + + V DLP D L L + Sbjct: 5 ILRHMHITDWQLRCPEVLPHAPSALRSKAGPVCWVVGDLPGWIDDL------CLVLHLAD 58 Query: 68 VLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQICT 127 + + A LP W L + E ++ E L ++ +A+ LW QIC Sbjct: 59 YQHVL--QPADLPVSLDEGDWILWSGESVTPEN--YPHAHQLSLSSSASAKQQLWHQICQ 114 Query: 128 YEH 130 YE+ Sbjct: 115 YEN 117 >UniRef50_Q087L7 Putative uncharacterized protein n=2 Tax=Shewanella RepID=Q087L7_SHEFN Length = 124 Score = 38.3 bits (88), Expect = 0.077, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 8 QLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQ 67 L + IT+W ++ P LV+ D + DVLR L V DQ Sbjct: 6 FLDAMNITRW-----------LSADKPLKPYLVLHDLDADLSDQMFIHDVLRLLNVDIDQ 54 Query: 68 VLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQICT 127 M+ W + + V++P LTDL A + LWQQI Sbjct: 55 CEF----DCEMIKGPQV--IWDMRKTKVRPRVAWVVSAP-LTDLHALADEKRHLWQQISQ 107 Query: 128 Y 128 + Sbjct: 108 H 108 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C6CDZ2 DNA polymerase III psi subunit n=2 Tax=Enterobac... 175 6e-43 UniRef50_P28632 DNA polymerase III subunit psi n=146 Tax=Enterob... 174 7e-43 UniRef50_Q7MZN1 DNA polymerase III, psi subunit n=2 Tax=Photorha... 174 7e-43 UniRef50_C4K3W1 DNA polymerase III, psi subunit n=1 Tax=Candidat... 169 2e-41 UniRef50_B4EWW3 DNA polymerase III, psi subunit n=2 Tax=Proteus ... 168 4e-41 UniRef50_D2TW28 DNA polymerase III subunit psi n=1 Tax=Arsenopho... 160 1e-38 UniRef50_D1P6I5 DNA polymerase III, psi subunit n=5 Tax=Enteroba... 156 1e-37 UniRef50_D0LZU9 DNA polymerase III psi subunit n=7 Tax=Vibrio Re... 151 6e-36 UniRef50_C8QB60 DNA polymerase III psi subunit n=1 Tax=Pantoea s... 151 7e-36 UniRef50_Q6LUI1 Putative DNA polymerase III, psi subunit n=4 Tax... 147 9e-35 UniRef50_B5FA91 DNA polymerase III, psi subunit n=3 Tax=Aliivibr... 144 9e-34 UniRef50_Q1LSL4 DNA polymerase III, psi subunit n=1 Tax=Baumanni... 143 1e-33 UniRef50_D0I7Y0 DNA polymerase III psi subunit n=1 Tax=Grimontia... 143 2e-33 UniRef50_Q7MI30 DNA polymerase III, psi subunit n=12 Tax=Vibrion... 143 2e-33 UniRef50_C9PKT3 DNA polymerase III psi subunit n=4 Tax=Vibrio Re... 141 5e-33 UniRef50_Q65S64 Putative uncharacterized protein n=1 Tax=Mannhei... 136 2e-31 UniRef50_A6VMV3 DNA polymerase III psi subunit n=1 Tax=Actinobac... 136 2e-31 UniRef50_Q493T1 DNA polymerase III, psi subunit n=1 Tax=Candidat... 136 2e-31 UniRef50_C9PMP3 DNA polymerase III subunit psi n=1 Tax=Pasteurel... 131 5e-30 UniRef50_B0UW01 DNA polymerase III psi subunit n=2 Tax=Histophil... 130 1e-29 UniRef50_P43750 DNA polymerase III subunit psi n=17 Tax=Pasteure... 129 2e-29 UniRef50_A5F922 DNA polymerase III, psi subunit n=30 Tax=Vibrio ... 129 3e-29 UniRef50_A1SZK3 Putative DNA polymerase III, psi subunit n=1 Tax... 127 1e-28 UniRef50_B3GZF2 DNA polymerase III psi subunit protein n=9 Tax=P... 126 2e-28 UniRef50_C6APC7 DNA polymerase III subunit psi n=2 Tax=Aggregati... 125 3e-28 UniRef50_A6F6D4 DNA polymerase III, psi subunit n=1 Tax=Moritell... 125 4e-28 UniRef50_Q7VQL8 DNA polymerase III, psi subunit n=1 Tax=Candidat... 118 5e-26 UniRef50_Q1ZHY6 DNA polymerase III subunit psi n=1 Tax=Psychromo... 116 1e-25 UniRef50_A6D233 DNA polymerase III subunit psi n=1 Tax=Vibrio sh... 114 8e-25 UniRef50_C0N9N5 Putative uncharacterized protein n=1 Tax=Methylo... 93 2e-18 UniRef50_A4SJ12 Putative uncharacterized protein n=1 Tax=Aeromon... 86 4e-16 Sequences not found previously or not previously below threshold: UniRef50_Q487A6 Putative uncharacterized protein n=1 Tax=Colwell... 48 7e-05 UniRef50_A9L016 Putative uncharacterized protein n=11 Tax=Shewan... 47 2e-04 UniRef50_Q087L7 Putative uncharacterized protein n=2 Tax=Shewane... 44 0.002 UniRef50_A8H7D7 Putative uncharacterized protein n=3 Tax=Shewane... 43 0.004 UniRef50_C4LBW9 Putative uncharacterized protein n=1 Tax=Tolumon... 41 0.012 >UniRef50_C6CDZ2 DNA polymerase III psi subunit n=2 Tax=Enterobacteriaceae RepID=C6CDZ2_DICDC Length = 145 Score = 175 bits (443), Expect = 6e-43, Method: Composition-based stats. Identities = 72/133 (54%), Positives = 95/133 (71%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 M SRRDW LQQLG+TQW LRRP AL+GEIA+ +P+ VRL++VA+ LPA DPL+ DVLR+ Sbjct: 1 MASRRDWLLQQLGMTQWVLRRPAALRGEIAVNLPSAVRLLIVADPLPANDDPLLLDVLRS 60 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 L ++P+Q LTP++ AMLP+ HC+ W G +G Q+ SPAL +L N A+ A Sbjct: 61 LALAPEQSYSLTPQQAAMLPEPIHCHCWWQGVAPSREPDGVQLTSPALAELSYNAGAKRA 120 Query: 121 LWQQICTYEHDFF 133 LWQQI +EH+F Sbjct: 121 LWQQIYHHEHNFH 133 >UniRef50_P28632 DNA polymerase III subunit psi n=146 Tax=Enterobacteriaceae RepID=HOLD_ECOLI Length = 137 Score = 174 bits (442), Expect = 7e-43, Method: Composition-based stats. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA Sbjct: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA Sbjct: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 Query: 121 LWQQICTYEHDFFPRND 137 LWQQICTYEHDFFPRND Sbjct: 121 LWQQICTYEHDFFPRND 137 >UniRef50_Q7MZN1 DNA polymerase III, psi subunit n=2 Tax=Photorhabdus RepID=Q7MZN1_PHOLL Length = 137 Score = 174 bits (442), Expect = 7e-43, Method: Composition-based stats. Identities = 58/136 (42%), Positives = 80/136 (58%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA 60 M +RRD L QLGITQW+LR P LQGE+A+ +P RL+++ ND LT+ L+ D+ A Sbjct: 1 MVTRRDRLLAQLGITQWTLRNPTVLQGELAVHLPDTTRLLIITNDHIDLTNSLLIDIFTA 60 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 + + V +T +AMLP+ C W LG D LS G + SPAL DL + A+ + Sbjct: 61 MGLDKSSVYCITTNNVAMLPEQVKCPYWLLGVDITLSWPGISLRSPALNDLYCDGQAKRS 120 Query: 121 LWQQICTYEHDFFPRN 136 LWQQI +E F + Sbjct: 121 LWQQISQHEQHFSINS 136 >UniRef50_C4K3W1 DNA polymerase III, psi subunit n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3W1_HAMD5 Length = 144 Score = 169 bits (429), Expect = 2e-41, Method: Composition-based stats. Identities = 61/133 (45%), Positives = 85/133 (63%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 S RD LQQLGITQW L+ P QGE+ + + ++R ++V + LPA + L+ DVL+AL Sbjct: 2 SNRDRLLQQLGITQWVLKHPSVFQGEMFLQLTENIRFIIVGDPLPAYDNDLIKDVLQALR 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALW 122 + P+QV L P ++ M P+ + C+SWRLG E LSL G Q+ SP D N A+ ALW Sbjct: 62 LEPNQVYFLMPFQLKMFPKNTRCHSWRLGVRESLSLIGVQLYSPKWDDFYQNGKAKHALW 121 Query: 123 QQICTYEHDFFPR 135 +QIC +E DF+ Sbjct: 122 KQICDHETDFYFN 134 >UniRef50_B4EWW3 DNA polymerase III, psi subunit n=2 Tax=Proteus mirabilis RepID=B4EWW3_PROMH Length = 136 Score = 168 bits (427), Expect = 4e-41, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 71/130 (54%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 SR+D L QLGI QW LR+P L+GE ++ P RL+++ +D+ L + L SD+ + Sbjct: 2 SRKDRMLAQLGIRQWVLRKPAVLKGEHSVQFPDTTRLLIITDDVVDLNNGLFSDIFSTMG 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALW 122 + ++ +T E +++L W LGTD L + + SP+L L + A+ LW Sbjct: 62 IDKSEIYCITSEDVSLLTGSFTPACWLLGTDITLPAQYTSLRSPSLHQLYFDANAKRDLW 121 Query: 123 QQICTYEHDF 132 +QI +E F Sbjct: 122 KQIYQHEDHF 131 >UniRef50_D2TW28 DNA polymerase III subunit psi n=1 Tax=Arsenophonus nasoniae RepID=D2TW28_9ENTR Length = 136 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 81/133 (60%) Query: 5 RDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVS 64 RD L+ +GI QW+LR P L+GE A++IP +LV++AN+ L + LV D+LRA+ + Sbjct: 4 RDQLLKHMGIVQWTLRNPTVLRGEHAVSIPDSTQLVIIANERIDLDNLLVKDILRAMQID 63 Query: 65 PDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQ 124 QV L +++++LP+ + W LG +S + + + L ++ NP ++ ALW Q Sbjct: 64 SCQVCCLLTKEVSLLPKEVYWPCWILGKQLAVSSKKWVIHTLPLEEIYFNPQSKRALWAQ 123 Query: 125 ICTYEHDFFPRND 137 IC YE++F R + Sbjct: 124 ICQYENNFEFRTN 136 >UniRef50_D1P6I5 DNA polymerase III, psi subunit n=5 Tax=Enterobacteriaceae RepID=D1P6I5_9ENTR Length = 136 Score = 156 bits (396), Expect = 1e-37, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 70/130 (53%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD L+Q+GITQW +R P L+GE + IP +L+++ ++ L L+ D+ + Sbjct: 2 TRRDRLLEQMGITQWMVRNPAVLRGERGVRIPESTKLIIITDENLDLNSQLLKDIFFTMD 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALW 122 + ++ + E++ ++P W LG + SP L++L A+ A+ ALW Sbjct: 62 IDETDMVCINSEQLKLIPTPITIPCWVLGNEIHPEGSKFTFISPVLSELIASSHAKQALW 121 Query: 123 QQICTYEHDF 132 +QI Y+ +F Sbjct: 122 KQIYQYDENF 131 >UniRef50_D0LZU9 DNA polymerase III psi subunit n=7 Tax=Vibrio RepID=D0LZU9_VIBSE Length = 136 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIA--IAIPAHVRLVMVANDLPA-LTDPLVSDV 57 M+ L ++GI+ W L P L G + I + + +L++++ P T L ++ Sbjct: 1 MSINEKQYLHEMGISTWELVHPDRLAGYQSPKIDLQSSCKLLLISPVCPENETAVLFENI 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L+++ ++ DQ L + PE+ +L Q W G + + + + SP L D+ N Sbjct: 61 LKSMKLTLDQALHIEPERFPLLGQHELEWVWFAGCEAEVLPDTKPLTSPLLQDVDGNTQQ 120 Query: 118 RAALWQQICTYEH 130 + ALWQQIC+Y + Sbjct: 121 KRALWQQICSYNN 133 >UniRef50_C8QB60 DNA polymerase III psi subunit n=1 Tax=Pantoea sp. At-9b RepID=C8QB60_9ENTR Length = 125 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 57/122 (46%), Positives = 76/122 (62%) Query: 12 LGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQL 71 +GITQ+ LRRP LQGEIA+ + RLV+VA PAL +PLV DVLR L + P QV+ L Sbjct: 1 MGITQYQLRRPRVLQGEIAVRLTPDTRLVLVAEHAPALHEPLVRDVLRTLNLQPAQVMTL 60 Query: 72 TPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQICTYEHD 131 TPE++ MLP+ C W LG D G A+ A +L ++ A+ ALWQQ+C ++ Sbjct: 61 TPEQLQMLPEQVDCAGWLLGVDSSHPFNGVTFATAAFNELISSGAAKRALWQQMCNHDSH 120 Query: 132 FF 133 F Sbjct: 121 LF 122 >UniRef50_Q6LUI1 Putative DNA polymerase III, psi subunit n=4 Tax=Photobacterium RepID=Q6LUI1_PHOPR Length = 133 Score = 147 bits (372), Expect = 9e-35, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIA--IAIPAHVRLVMVAN-DLPALTDPLVSDV 57 M R LQ++G+T W +R+P I +P +L+ + + +L L + Sbjct: 1 MKQRDIQVLQEMGLTYWQVRKPEFFPNMQVPVIDLPESCKLLFITDNELNEHDAWLFGRI 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L ++ ++P+Q L L E + + + W G + + S +L + +NP++ Sbjct: 61 LGSMKLTPEQALSLPLEAVEQVAEHHLTWCWFAGCQGAHPVGCQVLNSSSLQAMHSNPSS 120 Query: 118 RAALWQQICTYE 129 + ALWQQIC+Y+ Sbjct: 121 KKALWQQICSYD 132 >UniRef50_B5FA91 DNA polymerase III, psi subunit n=3 Tax=Aliivibrio RepID=B5FA91_VIBFM Length = 133 Score = 144 bits (363), Expect = 9e-34, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIA--IAIPAHVRLVMVANDLP-ALTDPLVSDV 57 M + L ++ I+ W +R+ +++P +L+ VA +P L V Sbjct: 1 MPQQALQFLNEMDISVWQVRQTSYFPALENTTLSLPETCQLLFVAPAIPTERDAFLFGKV 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L ++ +SP+Q L L+ E + + + W G + SP L+++ +N + Sbjct: 61 LASMKLSPEQALFLSSESLEYIGEHHLDWCWFSGVSTTELEGVKILTSPLLSEMHSNTQS 120 Query: 118 RAALWQQICTYEH 130 R LW+QIC+Y++ Sbjct: 121 RRDLWRQICSYDN 133 >UniRef50_Q1LSL4 DNA polymerase III, psi subunit n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LSL4_BAUCH Length = 135 Score = 143 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQG--EIAIAIPAHVRLVMVANDLPALTDPLVSDVL 58 M + + ++QLGI QW LR P L E+ + PA +R ++VA+ LP + PL+SDV+ Sbjct: 1 MVNNINNYVKQLGIIQWILRYPPVLHSKEELVVLPPAKIRWLLVADQLPLINHPLISDVI 60 Query: 59 RALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTAR 118 R++ + P+Q+ +T +++ MLP+ S + W LG + +G + +P+L+ LR N A+ Sbjct: 61 RSMALIPEQLFMITSKQVMMLPKYSFYHCWWLGVIAIRNFKGISLFTPSLSVLRNNAVAK 120 Query: 119 AALWQQICTYEHDFF 133 LW+QI Y+ Sbjct: 121 RDLWRQIMNYQQYLS 135 >UniRef50_D0I7Y0 DNA polymerase III psi subunit n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I7Y0_VIBHO Length = 131 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 4 RRDWQLQQLGITQWSLRRPGALQGEIA--IAIPAHVRLVMVANDLPA-LTDPLVSDVLRA 60 +L+++GIT W +RRP I++P +L++V+ +P+ L VL + Sbjct: 2 NDLQRLKEMGITVWDIRRPECFPDVTPKTISLPESCQLLLVSEHVPSGQDAWLFGKVLAS 61 Query: 61 LTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAA 120 + ++P+Q L L P+ + +L + W G + SP+L L + A+ Sbjct: 62 MKLTPEQALHLPPQALGLLGKHQLVWCWFAGVSAVSLDGVNTLTSPSLAALDKDQGAKKG 121 Query: 121 LWQQICTYEH 130 LWQQI YE Sbjct: 122 LWQQIKRYES 131 >UniRef50_Q7MI30 DNA polymerase III, psi subunit n=12 Tax=Vibrionales RepID=Q7MI30_VIBVY Length = 138 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEI--AIAIPAHVRLVMVANDLP-ALTDPLVSDV 57 MT LQ++GI+ W L P + G ++P +L+++A P + T V Sbjct: 6 MTENEKLYLQEMGISLWQLHHPERMMGYEMPTFSLPEECQLLLIAPSCPISQTALFFEKV 65 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTD-EPLSLEGAQVASPALTDLRANPT 116 L+++ + Q +TPE+++ L S W G +PL + + SP L + + Sbjct: 66 LKSMQLELSQARHITPEQLSTLEPHSLQWVWFAGCPVQPLPMVAKVLQSPELAQIDGHNE 125 Query: 117 ARAALWQQICTYE 129 R ALWQQI +YE Sbjct: 126 HRRALWQQIRSYE 138 >UniRef50_C9PKT3 DNA polymerase III psi subunit n=4 Tax=Vibrio RepID=C9PKT3_VIBFU Length = 136 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIAI--AIPAHVRLVMVANDLPALTDPL-VSDV 57 M+ R+ L +GI W L P LQG + RLV+V++ P + L V Sbjct: 1 MSDRQQHYLHAMGIQSWDLVHPERLQGYQPTLAPLDDECRLVLVSDTYPTAAEALLFERV 60 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L++ V + P ++A L W G + + ++ SPAL D+ + Sbjct: 61 LKSFHVPLAAARHVFPHQLAQLDLSGLAWIWLAGVEVDVDTSANRLTSPALADIDGHTQH 120 Query: 118 RAALWQQICTY 128 R LWQQIC+Y Sbjct: 121 RRDLWQQICSY 131 >UniRef50_Q65S64 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65S64_MANSM Length = 136 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 8/133 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ+LGITQW LRRP L+G I IA+ H+RL+++A + D + DVLR+ Sbjct: 2 NRRDHLLQELGITQWQLRRPDVLKGAINIAVEEHIRLLVIAECTLSARDFFIQDVLRSAE 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEP--------LSLEGAQVASPALTDLRAN 114 + L LT + A L N W L ++ +L+ + +P L L+ + Sbjct: 62 IKLQDCLFLTFSQAAHLTVQHPVNYWLLSDEQGIIEQTLTFCTLQNSLWQTPDLPRLKLD 121 Query: 115 PTARAALWQQICT 127 A+ ALW+QI T Sbjct: 122 RRAKQALWKQIQT 134 >UniRef50_A6VMV3 DNA polymerase III psi subunit n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMV3_ACTSZ Length = 135 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 8/132 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 ++RD+ L ++GI QW L RP L+G + I I ++RL++++++LP + L+ D+LR++ Sbjct: 2 NKRDFILCEMGIIQWELVRPDVLKGAVNIPISENIRLIVISDNLPERQNCLLQDILRSVE 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEP--------LSLEGAQVASPALTDLRAN 114 ++ + L I+ L W L ++ S LT L A+ Sbjct: 62 LNQSECLFTDFAHISHLNIRHPLKYWVLTENQEKIDRTLPLCKQAEKIWQSADLTRLSAD 121 Query: 115 PTARAALWQQIC 126 + ALW+QIC Sbjct: 122 GKLKRALWKQIC 133 >UniRef50_Q493T1 DNA polymerase III, psi subunit n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q493T1_BLOPB Length = 140 Score = 136 bits (342), Expect = 2e-31, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 7/132 (5%) Query: 1 MTSRRD----WQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLP-ALTDPLVS 55 +T+ R+ + Q+LGIT W LR P L I + +RLV+++ D+P +L DP + Sbjct: 2 LTNNRNKPHTFIFQELGITLWKLRYPVVLDSINPIKLWPSLRLVLISPDVPISLNDPFIK 61 Query: 56 DVLRALTVSPDQVLQLTPEKIAML--PQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRA 113 DV+RA+ ++P +V LT +I +L P W +GT +L + +PAL+ L+ Sbjct: 62 DVIRAMQINPREVCALTTNQIKILIIPSEFSYYCWWIGTKVSNNLNSICLTTPALSILKC 121 Query: 114 NPTARAALWQQI 125 + A+ LW+QI Sbjct: 122 DIHAKRDLWRQI 133 >UniRef50_C9PMP3 DNA polymerase III subunit psi n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PMP3_9PAST Length = 138 Score = 131 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ++GITQW L+ P L+G + I + H+RL++V + A L+ DVL +L+ Sbjct: 2 NRRDLMLQEMGITQWQLKHPERLKGVVNIVLSEHIRLIIVCDSEIASNSALLKDVLLSLS 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTD-------EPLSLEGAQ-VASPALTDLRAN 114 ++ + + + ++ L N W L + L + + + + Sbjct: 62 LNEQEYICVDFQQAQHLKPTQKLNYWLLSENHEKIDRTLSLCHQANSIWQTTDWQQFKQD 121 Query: 115 PTARAALWQQICT 127 A+ LW+QI T Sbjct: 122 HQAKRQLWKQIQT 134 >UniRef50_B0UW01 DNA polymerase III psi subunit n=2 Tax=Histophilus somni RepID=B0UW01_HAES2 Length = 134 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ++GI+QW LR P L+G + +++ ++RL+M++ P + D+ R+L Sbjct: 2 NRRDKLLQEMGISQWKLRHPEILKGLVNVSVAKNIRLIMISEQPVLKEQPFLQDIFRSLE 61 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGA-------QVASPALTDLRANP 115 + + L + + + L W L D+ S L L+ +P Sbjct: 62 LMKEDCLCIDFDFLPYLQVEHEVIYWLLTNDQQKIDRTLSDKQYMPCWKSNELERLKQSP 121 Query: 116 TARAALWQQIC 126 + WQQI Sbjct: 122 QEKRQFWQQIQ 132 >UniRef50_P43750 DNA polymerase III subunit psi n=17 Tax=Pasteurellaceae RepID=HOLD_HAEIN Length = 134 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 9/133 (6%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD LQ++GI+QW L RP LQG + I++ ++RL+ V+++ + PL++DVL +L Sbjct: 2 NRRDLLLQEMGISQWELYRPEVLQGSVGISVAENIRLITVSDENISS-SPLLADVLLSLN 60 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEP--------LSLEGAQVASPALTDLRAN 114 + + L L ++I + W L + SP+ ++N Sbjct: 61 LKKENCLCLNYDQIQHMECKQPIRYWLLSENSDQIDRTLPFCKQAEQVYRSPSWQQFQSN 120 Query: 115 PTARAALWQQICT 127 A+ ALWQQI Sbjct: 121 HQAKRALWQQIQQ 133 >UniRef50_A5F922 DNA polymerase III, psi subunit n=30 Tax=Vibrio RepID=A5F922_VIBC3 Length = 135 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 3/126 (2%) Query: 7 WQLQQLGITQWSLRRPGALQGEIA--IAIPAHVRLVMVANDLPALTD-PLVSDVLRALTV 63 L + I QW L P L G + RL++VAN P + L+ +L++ + Sbjct: 6 HYLSAMDIQQWELIHPERLAGFQPRTQTLDHDCRLLLVANQPPQGAEILLLERILKSFQL 65 Query: 64 SPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQ 123 V + P +++ L W G D Q+ SP L+D+ N R ALWQ Sbjct: 66 ELSMVRYIAPIQLSQLAYTGLEWIWFAGCDPLSHQAQKQLHSPRLSDIDGNTQYRRALWQ 125 Query: 124 QICTYE 129 QIC ++ Sbjct: 126 QICAHQ 131 >UniRef50_A1SZK3 Putative DNA polymerase III, psi subunit n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SZK3_PSYIN Length = 131 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQGEIA---IAIPAHVRLVMVANDLPALTDPLVSDV 57 M ++ LQ++GIT+W +R+P + I + H +L++VA+ PL+ + Sbjct: 1 MKHQQALYLQEMGITRWQVRKPDLFPLSLNLCTIDLS-HYKLLLVASTA-DFAHPLMPSI 58 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTA 117 L A + +V + ++ L W + + S L L A+ A Sbjct: 59 LNAFNLKLSEVYCCSTDQFENLQGQLPELIWSTLGEINQPHGHKLLTSSTLVQLAADANA 118 Query: 118 RAALWQQICTYEH 130 + ALW+Q C + Sbjct: 119 KKALWKQFCAFNQ 131 >UniRef50_B3GZF2 DNA polymerase III psi subunit protein n=9 Tax=Pasteurellaceae RepID=B3GZF2_ACTP7 Length = 140 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 3 SRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALT 62 +RRD L ++ I QW L +P L+G+ I + V+LV+V + L D+LR L Sbjct: 2 NRRDLLLNEMNIPQWVLTKPQVLKGDAQIRLDNAVKLVVVCEE-NHQASGLFLDILRTLQ 60 Query: 63 VSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQ------VASPALTDLRANPT 116 + P+Q L E+ L H W + ++ + + DL N T Sbjct: 61 LQPNQYQWLDAEQARRLAFEHHPIFWLIQSELQAVEIAKKFANQTAWQHSSWKDL-TNVT 119 Query: 117 ARAALWQQICTYEHDFFPRND 137 + LW+Q+ + F +D Sbjct: 120 TKRQLWRQMAAFCQHFEENHD 140 >UniRef50_C6APC7 DNA polymerase III subunit psi n=2 Tax=Aggregatibacter RepID=C6APC7_AGGAN Length = 150 Score = 125 bits (315), Expect = 3e-28, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 8/131 (6%) Query: 4 RRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTV 63 RRD LQQ+GI+QW LRRP L G I IA+P H+RL++V+ L P+V DVLR+LT+ Sbjct: 14 RRDVLLQQMGISQWQLRRPDLLLGAINIAVPEHIRLIIVSQQ-NLLQQPVVQDVLRSLTL 72 Query: 64 SPDQVLQLTPEKIAMLPQGSHCNSWRLGTDE-------PLSLEGAQVASPALTDLRANPT 116 + +QVL +T E++ L + W L + PL S L + + NP Sbjct: 73 NSEQVLNITFEQLTYLQVNHEVSYWLLSKNTSKNDRTLPLQQPLNVWQSDDLEEFKQNPQ 132 Query: 117 ARAALWQQICT 127 A+ WQ I Sbjct: 133 AKRQFWQTIQQ 143 >UniRef50_A6F6D4 DNA polymerase III, psi subunit n=1 Tax=Moritella sp. PE36 RepID=A6F6D4_9GAMM Length = 133 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 1 MTSRRDWQLQQLGITQWSLRRPGALQ----GEIAIAIPAHVRLVMVANDLPALTDPLVSD 56 M++ + LQQ+GIT W +P IA+P H +++++AND A + Sbjct: 1 MSNFSRYYLQQMGITLWQCHKPEQFPHLASQAEKIALPKHCQILIIANDKLAPHSQFIKQ 60 Query: 57 VLRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPT 116 +LR L + +Q +T E++ Q W +G + Q++SP L L + Sbjct: 61 ILRTLQLELNQSHIITEEELKYYYQT-PKWIWTIGCKQSDLAAKQQLSSPHLDVLLHSAQ 119 Query: 117 ARAALWQQICTYEH 130 A+ LWQQI +Y Sbjct: 120 AKKQLWQQIVSYMQ 133 >UniRef50_Q7VQL8 DNA polymerase III, psi subunit n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VQL8_BLOFL Length = 135 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Query: 4 RRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTV 63 D L++L IT W +R P L+ ++ + ++R ++++ +L DP V DV+RA+ V Sbjct: 2 NVDVVLKRLDITLWKIRYPAILKKSESVQLLINLRFLIISGLFISLDDPFVQDVIRAMRV 61 Query: 64 SPDQVL--QLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAAL 121 +V + +LP W +G + G + + +L L+ + + Sbjct: 62 KNIEVYIININEINNLILPVKVLNYCWWVGVEVLCDFGGISLCTESLNVLKYDMKGKQDF 121 Query: 122 WQQICT 127 W QI Sbjct: 122 WYQIYR 127 >UniRef50_Q1ZHY6 DNA polymerase III subunit psi n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHY6_9GAMM Length = 132 Score = 116 bits (292), Expect = 1e-25, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 1 MTSRRDWQLQQLGITQWSLRRPG---ALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDV 57 M ++ LQ++GIT+W LR LQ ++ + + +L+++ + PL+ ++ Sbjct: 1 MQHKKALYLQEMGITRWLLRNGQGFTYLQTKLPLVLS-TCQLLIICAEQ-DRVAPLLMNI 58 Query: 58 LRALTVSPDQVLQLTPEKIAMLPQGSHCNSW-RLGTDEPLSLEGAQVASPALTDLRANPT 116 L+A + +QV T + L W LG + + SP L+ L + Sbjct: 59 LKAFNIKAEQVYYCTMSEFLQLKADLPALIWSTLGAIDENITGSHVLTSPPLSQLCLDAN 118 Query: 117 ARAALWQQICT 127 + LW+Q C Sbjct: 119 KKKQLWKQYCD 129 >UniRef50_A6D233 DNA polymerase III subunit psi n=1 Tax=Vibrio shilonii AK1 RepID=A6D233_9VIBR Length = 143 Score = 114 bits (286), Expect = 8e-25, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 16/136 (11%) Query: 9 LQQLGITQWSLRRPGALQ--GEIAIAIPAHVRLVMVANDLPALTDPLV-SDVLRALTVSP 65 LQ +G+ W L P + ++++ RL+ V++ P + L +L+A+ + Sbjct: 7 LQLMGVQTWELTHPERIPVRSSPSLSLRPDCRLLFVSSVKPQGDNVLFYQKILKAMKLDL 66 Query: 66 DQVLQLTPEKIAML-PQGSHCNSWRLGTDEPLSLEGA------------QVASPALTDLR 112 + L + PE++ L Q W G ++ ++ SP L+++ Sbjct: 67 SETLHIVPEQLLSLDGQHIPEWIWFAGEEQANERFAQLTQQYQFTSSPRKLVSPQLSNID 126 Query: 113 ANPTARAALWQQICTY 128 N R ALW QI +Y Sbjct: 127 GNDMERRALWNQIRSY 142 >UniRef50_C0N9N5 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9N5_9GAMM Length = 162 Score = 93.0 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 28/151 (18%) Query: 1 MTSRRDWQLQQLGITQWSLRRP-------------GALQGEIAIAIPAHVRLVMVANDLP 47 ++ R+ + L +L I W LR + I + + L+M + ++ Sbjct: 3 LSKRQHFFLAELDIPVWELRETSLSTDAKIDDESTEYTPPALDIDLSPAIWLLMASTEMN 62 Query: 48 ALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSHCN-SWRLGTDEPLSLEGAQVASP 106 L +L+AL +S V + + L N + + L + P Sbjct: 63 DSEARLFDAMLKALKLSRRAVAVIDFQTFEALAGRDTDNKILLVMGETSLMPAALSLTQP 122 Query: 107 --------------ALTDLRANPTARAALWQ 123 +L D+ P +A +WQ Sbjct: 123 TLIQQNDSRWIATYSLQDMLQQPALKATVWQ 153 >UniRef50_A4SJ12 Putative uncharacterized protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SJ12_AERS4 Length = 169 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 50/138 (36%), Gaps = 31/138 (22%) Query: 5 RDWQLQQLGITQWSLRRPGALQGEIA-------------IAIPAHVRLVMVANDLPALTD 51 R L ++GI W LRRP L G + +P +L + A LP Sbjct: 37 RQHILARIGIQGWQLRRPQLLAGSRDEAAQTGQPDPRPHVDLP-TGKLWVRAPALP--DT 93 Query: 52 PLVSDVLRALTVSPDQVLQL--TPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALT 109 L+ D+ + L ++P +V L PE+ A W D SP Sbjct: 94 ALLHDICQLLGIAPHEVSLLQEMPEQAA------PPLLWLTEPDPRWPEALICPLSP--- 144 Query: 110 DLRANPTARAALWQQICT 127 + + ALWQQ+ Sbjct: 145 ----DAPHKRALWQQLRQ 158 >UniRef50_Q487A6 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q487A6_COLP3 Length = 125 Score = 48.3 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 11/126 (8%) Query: 1 MTSRRDWQ--LQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVL 58 M+ + L ++GI+ W R + A P H + + + L +D+L Sbjct: 1 MSINQHQFEQLSEMGISLWQ-HRTCDTPKDTVQAQPEHY---IDIDLKYLASQQLFNDIL 56 Query: 59 RALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEP-LSLEGAQVASPALTDLRANPTA 117 A+ +S ++ + L G + + + + Q+ +P +T+L +P Sbjct: 57 LAIGLSIGEINH----QSDHLDLGLFNWYFTATSSQNGIKWVEQQLFTPPITELSKSPAL 112 Query: 118 RAALWQ 123 + LWQ Sbjct: 113 KKQLWQ 118 >UniRef50_A9L016 Putative uncharacterized protein n=11 Tax=Shewanella RepID=A9L016_SHEB9 Length = 121 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 21/126 (16%) Query: 4 RRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPAL--TDPLVSDVLRAL 61 + L + +T W +R +++ ++ L +PL+ VL+ + Sbjct: 2 NKSAYLTAMNVTTWRVRDTKVKP------------YLVIWDENGELPEAEPLIDAVLKLI 49 Query: 62 TVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAAL 121 V ++ P W L + + S L DL A++AL Sbjct: 50 DVKREEC------DFDCEPHTGKQIVWDLRRHKVRPRTAW-LVSEPLADLLVGWQAKSAL 102 Query: 122 WQQICT 127 WQQI Sbjct: 103 WQQIYQ 108 >UniRef50_Q087L7 Putative uncharacterized protein n=2 Tax=Shewanella RepID=Q087L7_SHEFN Length = 124 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 18/121 (14%) Query: 8 QLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQ 67 L + IT+W ++ P LV+ D + DVLR L V DQ Sbjct: 6 FLDAMNITRW-----------LSADKPLKPYLVLHDLDADLSDQMFIHDVLRLLNVDIDQ 54 Query: 68 VLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQICT 127 + W + + V S LTDL A + LWQQI Sbjct: 55 C------EFDCEMIKGPQVIWDMRKTKVRPRVAWVV-SAPLTDLHALADEKRHLWQQISQ 107 Query: 128 Y 128 + Sbjct: 108 H 108 >UniRef50_A8H7D7 Putative uncharacterized protein n=3 Tax=Shewanella RepID=A8H7D7_SHEPA Length = 115 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 19/126 (15%) Query: 5 RDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLP-ALTDPLVSDVLRALTV 63 ++ L +GIT+W P A + V+V + P++ VL ++ Sbjct: 3 KNAYLDAMGITRWKKAIPQ-----------ADIMTVLVNPLRIKDVDSPIIGIVL---SL 48 Query: 64 SPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQ 123 V A + W + + +S +V S + +L ++ A+ ALW Sbjct: 49 IGADVNHCRFAVRAEVGSRV---IWDMRGKQAVS-GVDRVVSAPINELESSVEAKRALWA 104 Query: 124 QICTYE 129 + Y Sbjct: 105 NMQAYM 110 >UniRef50_C4LBW9 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBW9_TOLAT Length = 117 Score = 41.0 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 10/123 (8%) Query: 8 QLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQ 67 L+ + IT W LR P L + + V DLP + D+ L ++ Q Sbjct: 5 ILRHMHITDWQLRCPEVLPHAPSALRSKAGPVCWVVGDLP----GWIDDLCLVLHLADYQ 60 Query: 68 VLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEGAQVASPALTDLRANPTARAALWQQICT 127 L P + + G L ++ +A+ LW QIC Sbjct: 61 -HVLQPADLP-VSLDEGDWILWSGESVTPEN----YPHAHQLSLSSSASAKQQLWHQICQ 114 Query: 128 YEH 130 YE+ Sbjct: 115 YEN 117 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.153 0.469 Lambda K H 0.267 0.0470 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 937,884,624 Number of Sequences: 3077464 Number of extensions: 36023694 Number of successful extensions: 97851 Number of sequences better than 1.0e-01: 40 Number of HSP's better than 0.1 without gapping: 77 Number of HSP's successfully gapped in prelim test: 29 Number of HSP's that attempted gapping in prelim test: 97652 Number of HSP's gapped (non-prelim): 107 length of query: 137 length of database: 1,040,396,356 effective HSP length: 102 effective length of query: 35 effective length of database: 726,495,028 effective search space: 25427325980 effective search space used: 25427325980 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 87 (37.9 bits)