15/01/2012 07:40:31 : INFO  : Run start: Sun Jan 15 07:40:29 GMT 2012
15/01/2012 07:40:39 : INFO  : Initialised job
15/01/2012 07:40:41 : INFO  : Renaming log file 'phyre2_20120115_074028.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/7c6b5cecef2d4229/phyre_20120115_074028.log'
15/01/2012 07:40:43 : INFO  : Initialised job:
Sequence
>batch____
MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQAVLEAIRPHQHEFDLIV
ATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMYSALQDAGISPAKRVFIGE
QWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTLLLLHHHPLPAGCSWLDQHSL
RNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLLATPSTCVQFKPHCSNFTLDTIA
PGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY

15/01/2012 07:40:45 : INFO  : Checked sequence
15/01/2012 07:40:50 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 07:40:52 : INFO  : PSI-BLAST 3 iterations
15/01/2012 07:42:29 : INFO  : PSI-BLAST 5 iterations
15/01/2012 07:44:41 : INFO  : Finished PSI-BLAST
15/01/2012 07:44:45 : INFO  : Running Buildali to generate a3m file
15/01/2012 07:58:58 : INFO  : Converting to HMM
15/01/2012 07:59:04 : INFO  : Calibrating HMM
15/01/2012 07:59:20 : INFO  : Searching HMM database
15/01/2012 08:04:35 : INFO  : Finished buildali
15/01/2012 08:04:37 : INFO  : Predicting secondary structure
15/01/2012 08:04:45 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 08:04:47 : INFO  : Predicting Disordered regions
15/01/2012 08:04:51 : INFO  : Predicted Disorder (Disopred)
15/01/2012 08:04:53 : INFO  : Running memsat_svm check
15/01/2012 08:08:54 : INFO  : Globular protein
15/01/2012 08:08:55 : INFO  : Predicted Transmembrane (memsat_svm) ID '7c6b5cecef2d4229'
15/01/2012 08:08:57 : INFO  : Initialising fold library search
15/01/2012 08:09:01 : INFO  : Initialised search input
15/01/2012 08:09:03 : INFO  : Building Ensemble models
15/01/2012 08:09:07 : INFO  : Building hh.c3ib7A_.model.1.pdb
15/01/2012 08:09:24 : INFO  : Building hh.d3d03a1.model.2.pdb
15/01/2012 08:09:38 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7c6b5cecef2d4229/hh.d3d03a1.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7c6b5cecef2d4229/d3d03a1.2.pdb
15/01/2012 08:09:42 : INFO  : Building hh.c2hy1A_.model.3.pdb
15/01/2012 08:09:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7c6b5cecef2d4229/hh.c2hy1A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7c6b5cecef2d4229/c2hy1A_.3.pdb
15/01/2012 08:10:00 : INFO  : Building hh.d2hy1a1.model.4.pdb
15/01/2012 08:10:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7c6b5cecef2d4229/hh.d2hy1a1.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7c6b5cecef2d4229/d2hy1a1.4.pdb
15/01/2012 08:10:21 : INFO  : Building c3ib7A_.1.pdb
15/01/2012 08:10:38 : INFO  : Building d3d03a1.2.pdb
15/01/2012 08:10:54 : INFO  : Building c2hy1A_.3.pdb
15/01/2012 08:11:10 : INFO  : Building d2hy1a1.4.pdb
15/01/2012 08:11:27 : INFO  : Building d2nxfa1.5.pdb
15/01/2012 08:11:42 : INFO  : Building c2xmoB_.6.pdb
15/01/2012 08:12:00 : INFO  : Building c3av0A_.7.pdb
15/01/2012 08:12:17 : INFO  : Building c3auzA_.8.pdb
15/01/2012 08:12:32 : INFO  : Building c3t1iC_.9.pdb
15/01/2012 08:12:48 : INFO  : Building c2q8uA_.10.pdb
15/01/2012 08:13:04 : INFO  : Building c3qg5D_.11.pdb
15/01/2012 08:13:21 : INFO  : Building d1ii7a_.12.pdb
15/01/2012 08:13:40 : INFO  : Building d1utea_.13.pdb
15/01/2012 08:13:55 : INFO  : Building d2yvta1.14.pdb
15/01/2012 08:14:11 : INFO  : Building c3qfnA_.15.pdb
15/01/2012 08:14:27 : INFO  : Building d1uf3a_.16.pdb
15/01/2012 08:14:42 : INFO  : Building c1qhwA_.17.pdb
15/01/2012 08:15:02 : INFO  : Building d1qhwa_.18.pdb
15/01/2012 08:15:21 : INFO  : Building d1xzwa2.19.pdb
15/01/2012 08:15:39 : INFO  : Building d2qfra2.20.pdb
15/01/2012 08:17:13 : INFO  : Finished HH model building
15/01/2012 08:17:15 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 08:18:20 : INFO  : html domain output complete ID '7c6b5cecef2d4229'
15/01/2012 09:18:16 : INFO  : Run end  : Sun Jan 15 09:18:15 GMT 2012
