Phyre 2 Results for P0AEW4

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Email | l.a.kelley@imperial.ac.uk
Description | P0AEW4
Date | Thu Jan 5 11:24:25 GMT 2012
Unique Job ID | 7c6b5cecef2d4229

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3ib7A_
Top template information
PDB header:hydrolase Chain: A: PDB Molecule:icc protein; PDBTitle: crystal structure of full length rv0805
Confidence and coverage
Confidence: | 100.0% | Coverage: | 90%
247 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | E | S | L | L | T | L | P | L | A | G | E | A | R | V | R | I | L | Q | I | T | D | T | H | L | F | A | Q | K | H | E | A | L | L | G | V | N | T | W | E | S | Y | Q | A | V | L | E | A | I | R | P | H | Q | H | E | F | D | L | I | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | T | G | D | L | A | Q | D | Q | S | S | A | A | Y | Q | H | F | A | E | G | I | A | S | F | R | A | P | C | V | W | L | P | G | N | H | D | F | Q | P | A | M | Y | S | A | L | Q | D | A | G | I | S | P | A | K | R | V | F | I | G | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | Q | W | Q | I | L | L | L | D | S | Q | V | F | G | V | P | H | G | E | L | S | E | F | Q | L | E | W | L | E | R | K | L | A | D | A | P | E | R | H | T | L | L | L | L | H | H | H | P | L | P | A | G | C | S | W | L | D | Q | H | S | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | R | N | A | G | E | L | D | T | V | L | A | K | F | P | H | V | K | Y | L | L | C | G | H | I | H | Q | E | L | D | L | D | W | N | G | R | R | L | L | A | T | P | S | T | C | V | Q | F | K | P | H | C | S | N | F | T | L | D | T | I | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | .
Sequence |  | P | G | W | R | T | L | E | L | H | A | D | G | T | L | T | T | E | V | H | R | L | A | D | T | R | F | Q | P | D | T | A | S | E | G | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3ib7A_ |

### PDB 3ib7 chain A

Region: 12 - 259
Aligned: 247
Modelled: 248
Confidence: 100.0%
Identity: 29%
PDB header:hydrolase
Chain: A: PDB Molecule:icc protein;
PDBTitle: crystal structure of full length rv0805

Phyre2
2 |
| d3d03a1 |

### PDB 3d03 chain A domain 1

Region: 15 - 265
Aligned: 250
Modelled: 251
Confidence: 100.0%
Identity: 21%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: GpdQ-like

Phyre2
3 |
| c2hy1A_ |

### PDB 2hy1 chain A

Region: 12 - 258
Aligned: 219
Modelled: 230
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: A: PDB Molecule:rv0805;
PDBTitle: crystal structure of rv0805

Phyre2
4 |
| d2hy1a1 |

### PDB 2hy1 chain A domain 1

Region: 12 - 258
Aligned: 219
Modelled: 230
Confidence: 100.0%
Identity: 31%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: GpdQ-like

Phyre2
5 |
| d2nxfa1 |

### PDB 2nxf chain A domain 1

Region: 12 - 269
Aligned: 246
Modelled: 248
Confidence: 100.0%
Identity: 20%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: ADPRibase-Mn-like

Phyre2
6 |
| c2xmoB_ |

### PDB 2xmo chain B

Region: 9 - 262
Aligned: 238
Modelled: 239
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:lmo2642 protein;
PDBTitle: the crystal structure of lmo2642

Phyre2
7 |
| c3av0A_ |

### PDB 3av0 chain A

Region: 14 - 275
Aligned: 250
Modelled: 252
Confidence: 100.0%
Identity: 13%
PDB header:recombination
Chain: A: PDB Molecule:dna double-strand break repair protein mre11;
PDBTitle: crystal structure of mre11-rad50 bound to atp s

Phyre2
8 |
| c3auzA_ |

### PDB 3auz chain A

Region: 14 - 275
Aligned: 250
Modelled: 261
Confidence: 100.0%
Identity: 12%
PDB header:recombination
Chain: A: PDB Molecule:dna double-strand break repair protein mre11;
PDBTitle: crystal structure of mre11 with manganese

Phyre2
9 |
| c3t1iC_ |

### PDB 3t1i chain C

Region: 10 - 265
Aligned: 238
Modelled: 251
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: C: PDB Molecule:double-strand break repair protein mre11a;
PDBTitle: crystal structure of human mre11: understanding tumorigenic mutations

Phyre2
10 |
| c2q8uA_ |

### PDB 2q8u chain A

Region: 13 - 267
Aligned: 236
Modelled: 244
Confidence: 99.9%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease, putative;
PDBTitle: crystal structure of mre11 from thermotoga maritima msb8 (tm1635) at2 2.20 a resolution

Phyre2
11 |
| c3qg5D_ |

### PDB 3qg5 chain D

Region: 16 - 268
Aligned: 238
Modelled: 253
Confidence: 99.9%
Identity: 16%
PDB header:hydrolase
Chain: D: PDB Molecule:mre11;
PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair

Phyre2
12 |
| d1ii7a_ |

### PDB 1ii7 chain A

Region: 15 - 268
Aligned: 242
Modelled: 254
Confidence: 99.9%
Identity: 18%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: DNA double-strand break repair nuclease

Phyre2
13 |
| d1utea_ |

### PDB 1ute chain A

Region: 12 - 266
Aligned: 248
Modelled: 255
Confidence: 99.9%
Identity: 17%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: Purple acid phosphatase-like

Phyre2
14 |
| d2yvta1 |

### PDB 2yvt chain A domain 1

Region: 13 - 257
Aligned: 216
Modelled: 217
Confidence: 99.9%
Identity: 9%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: TT1561-like

Phyre2
15 |
| c3qfnA_ |

### PDB 3qfn chain A

Region: 15 - 262
Aligned: 215
Modelled: 236
Confidence: 99.9%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate

Phyre2
16 |
| d1uf3a_ |

### PDB 1uf3 chain A

Region: 16 - 260
Aligned: 208
Modelled: 217
Confidence: 99.9%
Identity: 13%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: TT1561-like

Phyre2
17 |
| c1qhwA_ |

### PDB 1qhw chain A

Region: 14 - 266
Aligned: 246
Modelled: 253
Confidence: 99.9%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:protein (purple acid phosphatase);
PDBTitle: purple acid phosphatase from rat bone

Phyre2
18 |
| d1qhwa_ |

### PDB 1qhw chain A

Region: 14 - 266
Aligned: 246
Modelled: 253
Confidence: 99.9%
Identity: 17%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: Purple acid phosphatase-like

Phyre2
19 |
| d1xzwa2 |

### PDB 1xzw chain A domain 2

Region: 8 - 265
Aligned: 239
Modelled: 245
Confidence: 99.9%
Identity: 15%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: Purple acid phosphatase-like

Phyre2
20 |
| d2qfra2 |

### PDB 2qfr chain A domain 2

Region: 10 - 265
Aligned: 238
Modelled: 238
Confidence: 99.9%
Identity: 17%
Fold: Metallo-dependent phosphatases
Superfamily: Metallo-dependent phosphatases
Family: Purple acid phosphatase-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3ib7A_ |
|  | 100.0 | 29 | PDB header:hydrolase Chain: A: PDB Molecule:icc protein; PDBTitle: crystal structure of full length rv0805
2 | d3d03a1 |
|  | 100.0 | 21 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:GpdQ-like
3 | c2hy1A_ |
|  | 100.0 | 31 | PDB header:hydrolase Chain: A: PDB Molecule:rv0805; PDBTitle: crystal structure of rv0805
4 | d2hy1a1 |
|  | 100.0 | 31 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:GpdQ-like
5 | d2nxfa1 |
|  | 100.0 | 20 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:ADPRibase-Mn-like
6 | c2xmoB_ |
|  | 100.0 | 21 | PDB header:hydrolase Chain: B: PDB Molecule:lmo2642 protein; PDBTitle: the crystal structure of lmo2642
7 | c3av0A_ |
|  | 100.0 | 13 | PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s
8 | c3auzA_ |
|  | 100.0 | 12 | PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese
9 | c3t1iC_ |
|  | 100.0 | 17 | PDB header:hydrolase Chain: C: PDB Molecule:double-strand break repair protein mre11a; PDBTitle: crystal structure of human mre11: understanding tumorigenic mutations
10 | c2q8uA_ |
|  | 99.9 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:exonuclease, putative; PDBTitle: crystal structure of mre11 from thermotoga maritima msb8 (tm1635) at2 2.20 a resolution
11 | c3qg5D_ |
|  | 99.9 | 16 | PDB header:hydrolase Chain: D: PDB Molecule:mre11; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair
12 | d1ii7a_ |
|  | 99.9 | 18 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DNA double-strand break repair nuclease
13 | d1utea_ |
|  | 99.9 | 17 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Purple acid phosphatase-like
14 | d2yvta1 |
|  | 99.9 | 9 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like
15 | c3qfnA_ |
|  | 99.9 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate
16 | d1uf3a_ |
|  | 99.9 | 13 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like
17 | c1qhwA_ |
|  | 99.9 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:protein (purple acid phosphatase); PDBTitle: purple acid phosphatase from rat bone
18 | d1qhwa_ |
|  | 99.9 | 17 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Purple acid phosphatase-like
19 | d1xzwa2 |
|  | 99.9 | 15 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Purple acid phosphatase-like
20 | d2qfra2 |
|  | 99.9 | 17 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Purple acid phosphatase-like
21 | c3rl4A_ |
| not modelled | 99.9 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:metallophosphoesterase mpped2; PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant
22 | c1kbpB_ |
| not modelled | 99.9 | 16 | PDB header:hydrolase (phosphoric monoester) Chain: B: PDB Molecule:purple acid phosphatase; PDBTitle: kidney bean purple acid phosphatase
23 | d1s3la_ |
| not modelled | 99.9 | 16 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like
24 | c1s3mA_ |
| not modelled | 99.9 | 16 | PDB header:phosphodiesterase Chain: A: PDB Molecule:hypothetical protein mj0936; PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase
25 | c1xzwB_ |
| not modelled | 99.9 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:purple acid phosphatase; PDBTitle: sweet potato purple acid phosphatase/phosphate complex
26 | d2a22a1 |
| not modelled | 99.9 | 19 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like
27 | d1z2wa1 |
| not modelled | 99.9 | 15 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like
28 | d1nnwa_ |
| not modelled | 99.8 | 10 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Phosphoesterase-related
29 | c1su1A_ |
| not modelled | 99.8 | 20 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli
30 | d1su1a_ |
| not modelled | 99.8 | 20 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like
31 | c3rqzC_ |
| not modelled | 99.8 | 21 | PDB header:hydrolase Chain: C: PDB Molecule:metallophosphoesterase; PDBTitle: crystal structure of metallophosphoesterase from sphaerobacter2 thermophilus
32 | d3ck2a1 |
| not modelled | 99.8 | 19 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like
33 | c2kknA_ |
| not modelled | 99.8 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of themotoga maritima protein tm1076:2 northeast structural genomics consortium target vt57
34 | d1xm7a_ |
| not modelled | 99.6 | 16 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Hypothetical protein aq 1666
35 | d1usha2 |
| not modelled | 99.6 | 10 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
36 | c1oidA_ |
| not modelled | 99.6 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:protein usha; PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c)
37 | d2z1aa2 |
| not modelled | 99.4 | 15 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
38 | c3qfkA_ |
| not modelled | 99.4 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: 2.05 angstrom crystal structure of putative 5'-nucleotidase from2 staphylococcus aureus in complex with alpha-ketoglutarate
39 | c2z1aA_ |
| not modelled | 99.3 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:5'-nucleotidase; PDBTitle: crystal structure of 5'-nucleotidase precursor from thermus2 thermophilus hb8
40 | c3ivdA_ |
| not modelled | 99.3 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:nucleotidase; PDBTitle: putative 5'-nucleotidase (c4898) from escherichia coli in2 complex with uridine
41 | d1g5ba_ |
| not modelled | 99.2 | 14 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase
42 | c2wdfA_ |
| not modelled | 99.1 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:sulfur oxidation protein soxb; PDBTitle: termus thermophilus sulfate thiohydrolase soxb
43 | d1t71a_ |
| not modelled | 99.1 | 12 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DR1281-like
44 | c3gveB_ |
| not modelled | 99.1 | 16 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yfkn protein; PDBTitle: crystal structure of calcineurin-like phosphoesterase yfkn from2 bacillus subtilis
45 | c3zu0A_ |
| not modelled | 99.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:nad nucleotidase; PDBTitle: structure of haemophilus influenzae nad nucleotidase (nadn)
46 | d3c9fa2 |
| not modelled | 99.0 | 14 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
47 | c3jyfB_ |
| not modelled | 98.9 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- PDBTitle: the crystal structure of a 2,3-cyclic nucleotide 2-2 phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor3 protein from klebsiella pneumoniae subsp. pneumoniae mgh 78578
48 | d2z06a1 |
| not modelled | 98.7 | 15 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TTHA0625-like
49 | c3c9fB_ |
| not modelled | 98.6 | 13 | PDB header:hydrolase Chain: B: PDB Molecule:5'-nucleotidase; PDBTitle: crystal structure of 5'-nucleotidase from candida albicans sc5314
50 | d1t70a_ |
| not modelled | 98.3 | 14 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DR1281-like
51 | c2qjcA_ |
| not modelled | 98.0 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:diadenosine tetraphosphatase, putative; PDBTitle: crystal structure of a putative diadenosine tetraphosphatase
52 | c2dfjA_ |
| not modelled | 97.4 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:diadenosinetetraphosphatase; PDBTitle: crystal structure of the diadenosine tetraphosphate2 hydrolase from shigella flexneri 2a
53 | c3e0jG_ |
| not modelled | 97.2 | 20 | PDB header:transferase Chain: G: PDB Molecule:dna polymerase subunit delta-2; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta
54 | c2zbmA_ |
| not modelled | 97.1 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine-phosphatase; PDBTitle: crystal structure of i115m mutant cold-active protein2 tyrosine phosphatase
55 | d1jk7a_ |
| not modelled | 96.9 | 16 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase
56 | d3c5wc1 |
| not modelled | 96.8 | 14 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase
57 | d1s70a_ |
| not modelled | 96.6 | 16 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase
58 | c2jogA_ |
| not modelled | 96.4 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: structure of the calcineurin-nfat complex
59 | d1s95a_ |
| not modelled | 96.3 | 16 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase
60 | c3icfB_ |
| not modelled | 96.1 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:serine/threonine-protein phosphatase t; PDBTitle: structure of protein serine/threonine phosphatase from saccharomyces2 cerevisiae with similarity to human phosphatase pp5
61 | c1auiA_ |
| not modelled | 95.8 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine phosphatase 2b; PDBTitle: human calcineurin heterodimer
62 | d1auia_ |
| not modelled | 95.8 | 14 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase
63 | c2p6bC_ |
| not modelled | 95.6 | 14 | PDB header:hydrolase/hydrolase regulator Chain: C: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: crystal structure of human calcineurin in complex with2 pvivit peptide
64 | d2p6ba1 |
| not modelled | 95.6 | 14 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase
65 | c1wao4_ |
| not modelled | 94.6 | 14 | PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure
66 | c3floG_ |
| not modelled | 91.5 | 9 | PDB header:transferase Chain: G: PDB Molecule:dna polymerase alpha subunit b; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit
67 | c3lmaC_ |
| not modelled | 41.3 | 20 | PDB header:membrane protein Chain: C: PDB Molecule:stage v sporulation protein ad (spovad); PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6.
68 | d1zhxa1 |
| not modelled | 27.6 | 16 | Fold:Oxysterol-binding protein-like Superfamily:Oxysterol-binding protein-like Family:Oxysterol-binding protein
69 | d1gg4a1 |
| not modelled | 20.4 | 16 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
70 | d1s1da_ |
| not modelled | 17.8 | 40 | Fold:5-bladed beta-propeller Superfamily:Apyrase Family:Apyrase
71 | c3menC_ |
| not modelled | 14.7 | 16 | PDB header:hydrolase Chain: C: PDB Molecule:acetylpolyamine aminohydrolase; PDBTitle: crystal structure of acetylpolyamine aminohydrolase from burkholderia2 pseudomallei, iodide soak
72 | c3q9cF_ |
| not modelled | 8.6 | 15 | PDB header:hydrolase Chain: F: PDB Molecule:acetylpolyamine amidohydrolase; PDBTitle: crystal structure of h159a apah complexed with n8-acetylspermidine
73 | c2gx8B_ |
| not modelled | 8.4 | 12 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3
74 | c3ew8A_ |
| not modelled | 7.9 | 8 | PDB header:hydrolase Chain: A: PDB Molecule:histone deacetylase 8; PDBTitle: crystal structure analysis of human hdac8 d101l variant
75 | d1heya_ |
| not modelled | 7.7 | 10 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
76 | c3ngoA_ |
| not modelled | 7.7 | 11 | PDB header:hydrolase/dna Chain: A: PDB Molecule:ccr4-not transcription complex subunit 6-like; PDBTitle: crystal structure of the human cnot6l nuclease domain in complex with2 poly(a) dna
77 | d2gx8a1 |
| not modelled | 7.1 | 12 | Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like
78 | c2y1hA_ |
| not modelled | 7.1 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyribonuclease tatdn3; PDBTitle: crystal structure of the human tatd-domain protein 3 (tatdn3)
79 | c3o0dF_ |
| not modelled | 7.0 | 30 | PDB header:hydrolase Chain: F: PDB Molecule:triacylglycerol lipase; PDBTitle: crystal structure of lip2 lipase from yarrowia lipolytica at 1.7 a2 resolution
80 | d1dz3a_ |
| not modelled | 6.7 | 9 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
81 | c3h02F_ |
| not modelled | 5.9 | 11 | PDB header:lyase Chain: F: PDB Molecule:naphthoate synthase; PDBTitle: 2.15 angstrom resolution crystal structure of naphthoate synthase from2 salmonella typhimurium.
82 | c2nydB_ |
| not modelled | 5.6 | 18 | PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388
83 | c3g7nA_ |
| not modelled | 5.4 | 30 | PDB header:hydrolase Chain: A: PDB Molecule:lipase; PDBTitle: crystal structure of a triacylglycerol lipase from2 penicillium expansum at 1.3
84 | d1tiaa_ |
| not modelled | 5.2 | 35 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases
85 | d3tgla_ |
| not modelled | 5.1 | 20 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases
86 | c3rsiA_ |
| not modelled | 5.1 | 10 | PDB header:isomerase Chain: A: PDB Molecule:putative enoyl-coa hydratase/isomerase; PDBTitle: the structure of a putative enoyl-coa hydratase/isomerase from2 mycobacterium abscessus atcc 19977 / dsm 44196

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0