BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (433 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 689 0.0 UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=13... 574 e-162 UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81... 417 e-115 UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 ... 398 e-109 UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36... 384 e-105 UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14... 375 e-102 UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 ... 367 e-100 UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10... 330 5e-89 UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolum... 329 1e-88 UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marin... 316 9e-85 UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 316 1e-84 UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 315 2e-84 UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 313 1e-83 UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=N... 311 4e-83 UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22... 310 5e-83 UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chrom... 310 5e-83 UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25... 305 2e-81 UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 ... 303 1e-80 UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(... 299 1e-79 UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase ... 299 1e-79 UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 298 2e-79 UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19... 296 8e-79 UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 294 5e-78 UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 293 6e-78 UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58... 291 3e-77 UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 290 1e-76 UniRef50_A3WPS3 SAM-dependent methyltransferase n=1 Tax=Idiomari... 283 7e-75 UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protei... 283 7e-75 UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenel... 282 2e-74 UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 T... 281 4e-74 UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=B... 279 1e-73 UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 278 3e-73 UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gamma... 277 5e-73 UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18... 276 1e-72 UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococ... 275 2e-72 UniRef50_B6BUM1 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=B... 267 5e-70 UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 266 8e-70 UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 263 8e-69 UniRef50_Q1QX18 RNA methyltransferase, TrmA family n=1 Tax=Chrom... 262 2e-68 UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingell... 259 2e-67 UniRef50_A1VQF1 23S rRNA (uracil-5-)-methyltransferase rumA n=8 ... 258 2e-67 UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12... 258 4e-67 UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=g... 256 1e-66 UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comam... 254 4e-66 UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Vario... 252 2e-65 UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 ... 251 3e-65 UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 249 1e-64 UniRef50_C8NCJ6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 245 2e-63 UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 T... 244 4e-63 UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 T... 238 2e-61 UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine ... 238 2e-61 UniRef50_A6GQJ2 23S rRNA (Uracil-5-)-methyltransferase (Fragment... 238 4e-61 UniRef50_A0LDR0 RNA methyltransferase, TrmA family n=1 Tax=Magne... 236 1e-60 UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter... 232 2e-59 UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 228 3e-58 UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA ... 226 9e-58 UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=... 224 4e-57 UniRef50_UPI0000E0E6C1 23S rRNA (uracil-5)-methyltransferase, re... 223 2e-56 UniRef50_Q2NVP1 Putative RNA methyltransferase n=1 Tax=Sodalis g... 221 3e-56 UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 221 3e-56 UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfo... 221 5e-56 UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geoba... 217 6e-55 UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desul... 213 2e-53 UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n... 211 5e-53 UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntr... 208 4e-52 UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammon... 206 1e-51 UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicy... 206 1e-51 UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veill... 205 3e-51 UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdema... 203 9e-51 UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clost... 203 1e-50 UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethi... 202 3e-50 UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 ... 201 4e-50 UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacil... 197 7e-49 UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desul... 197 8e-49 UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 196 2e-48 UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 194 4e-48 UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachl... 190 1e-46 UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desul... 190 1e-46 UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 189 2e-46 UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=... 188 3e-46 UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpe... 188 3e-46 UniRef50_C1F225 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=A... 188 3e-46 UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopisciu... 188 4e-46 UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Therm... 188 4e-46 UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bact... 187 6e-46 UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=De... 187 7e-46 UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1... 187 8e-46 UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 187 9e-46 UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=2... 187 9e-46 UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halot... 186 1e-45 UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 186 2e-45 UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdema... 186 2e-45 UniRef50_A4BBK4 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=R... 184 6e-45 UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacte... 184 8e-45 UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostri... 182 2e-44 UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyro... 181 3e-44 UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 181 3e-44 UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=... 181 4e-44 UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=... 181 4e-44 UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2... 181 4e-44 UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desul... 180 7e-44 UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 ... 180 1e-43 UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 179 1e-43 UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natra... 178 3e-43 UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moore... 178 4e-43 UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 177 8e-43 UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n... 177 8e-43 UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 176 1e-42 UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdema... 176 1e-42 UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillac... 176 1e-42 UniRef50_Q1D5V4 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 176 2e-42 UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desul... 176 2e-42 UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=... 175 3e-42 UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteri... 174 8e-42 UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=... 173 1e-41 UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicu... 173 1e-41 UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clost... 172 2e-41 UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonel... 172 2e-41 UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=... 172 3e-41 UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostri... 172 3e-41 UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodo... 171 7e-41 UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydro... 170 7e-41 UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 170 8e-41 UniRef50_D2LHX8 (Uracil-5)-methyltransferase n=1 Tax=Rhodomicrob... 169 3e-40 UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA ... 169 3e-40 UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacil... 168 3e-40 UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 168 4e-40 UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 167 6e-40 UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Corio... 167 8e-40 UniRef50_C6QG14 (Uracil-5)-methyltransferase n=1 Tax=Hyphomicrob... 166 1e-39 UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae Rep... 166 2e-39 UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=... 166 2e-39 UniRef50_B2UQE8 RNA methyltransferase, TrmA family n=4 Tax=Verru... 165 3e-39 UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desul... 165 3e-39 UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaer... 164 4e-39 UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptoco... 164 4e-39 UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Therm... 164 4e-39 UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus Rep... 164 6e-39 UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n... 164 7e-39 UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1... 164 7e-39 UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevot... 164 8e-39 UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candi... 163 9e-39 UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synec... 163 1e-38 UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Therm... 163 1e-38 UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostri... 163 1e-38 UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Ta... 162 2e-38 UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 162 2e-38 UniRef50_A9HRW8 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 162 2e-38 UniRef50_C8PMC8 tRNA (Uracil-5-)-methyltransferase family protei... 162 2e-38 UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1... 162 2e-38 UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bactero... 162 3e-38 UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 161 5e-38 UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=P... 161 5e-38 UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacil... 161 5e-38 UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus ... 160 6e-38 UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=D... 160 7e-38 UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 ... 160 7e-38 UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotom... 159 1e-37 UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n... 159 1e-37 UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein ... 159 2e-37 UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chlor... 159 2e-37 UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopo... 159 2e-37 UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=1... 159 2e-37 UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=S... 159 2e-37 UniRef50_C6WAK7 Deoxyribonuclease/rho motif-related TRAM n=1 Tax... 159 2e-37 UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna R... 158 4e-37 UniRef50_Q6MGU3 Uncharacterized RNA methyltransferase Bd3828 n=1... 158 4e-37 UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase Ru... 157 6e-37 UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Rosei... 156 1e-36 UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petro... 156 1e-36 UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacte... 156 2e-36 UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 155 2e-36 UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 ... 155 2e-36 UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinel... 155 4e-36 UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 155 4e-36 UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 ... 155 4e-36 UniRef50_C7LUG8 Deoxyribonuclease/rho motif-related TRAM n=1 Tax... 154 5e-36 UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 ... 154 6e-36 UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desul... 154 8e-36 UniRef50_Q2WAJ3 SAM-dependent methyltransferase related to tRNA ... 154 9e-36 UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spiro... 153 1e-35 UniRef50_Q73JF6 Uncharacterized RNA methyltransferase TDE_2619 n... 153 1e-35 UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desul... 153 1e-35 UniRef50_Q0BSI6 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Granu... 152 2e-35 UniRef50_Q0F1X5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=M... 152 2e-35 UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacte... 152 2e-35 UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzym... 151 4e-35 UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=... 151 5e-35 UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=unculture... 150 9e-35 UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collins... 150 1e-34 UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmo... 149 2e-34 UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 149 2e-34 UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desul... 149 2e-34 UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=... 149 2e-34 UniRef50_A6DJC1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lenti... 149 2e-34 UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepI... 147 9e-34 UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=1... 146 1e-33 UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n... 146 2e-33 UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA ... 146 2e-33 UniRef50_B8C918 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 145 2e-33 UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna R... 145 2e-33 UniRef50_B9XDW9 RNA methyltransferase, TrmA family n=1 Tax=bacte... 145 3e-33 UniRef50_Q9A8M7 Uncharacterized RNA methyltransferase CC_1326 n=... 145 4e-33 UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacte... 144 7e-33 UniRef50_A3UJK5 Possible hypothetical RNA methyltransferase n=1 ... 144 8e-33 UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Achol... 144 9e-33 UniRef50_C8QZ82 RNA methyltransferase, TrmA family n=1 Tax=Desul... 144 9e-33 UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacte... 143 1e-32 UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1... 143 1e-32 UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 143 1e-32 UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 143 1e-32 UniRef50_A6G9S9 RNA methyltransferase n=1 Tax=Plesiocystis pacif... 142 2e-32 UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavo... 142 3e-32 UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcu... 141 5e-32 UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 141 6e-32 UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttle... 140 7e-32 UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclass... 140 8e-32 UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=... 140 8e-32 UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4R... 140 1e-31 UniRef50_C5SKB7 (Uracil-5)-methyltransferase n=3 Tax=Caulobacter... 140 1e-31 UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6... 140 1e-31 UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Rosebur... 140 1e-31 UniRef50_Q6NB80 Uncharacterized RNA methyltransferase RPA0948 n=... 139 2e-31 UniRef50_A0NR20 RNA methyltransferase putative, TrmA family prot... 139 2e-31 UniRef50_A7HR73 23S rRNA (Uracil-5-)-methyltransferase RumA n=4 ... 139 3e-31 UniRef50_B9R3Z1 tRNA (Uracil-5-)-methyltransferase superfamily n... 138 5e-31 UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitu... 137 5e-31 UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteri... 137 7e-31 UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protei... 137 7e-31 UniRef50_Q0FDP2 23S rRNA (Uracil-5-)-methyltransferase rumA n=2 ... 137 8e-31 UniRef50_D2BIA5 RNA methyltransferase, TrmA family n=5 Tax=Dehal... 137 9e-31 UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzym... 135 2e-30 UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protei... 135 2e-30 UniRef50_C8X3P2 (Uracil-5)-methyltransferase n=1 Tax=Desulfohalo... 135 2e-30 UniRef50_Q8YFM4 Uncharacterized RNA methyltransferase BMEI1496 n... 135 2e-30 UniRef50_Q2CJR9 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 ... 135 3e-30 UniRef50_A5FVX5 (Uracil-5)-methyltransferase n=1 Tax=Acidiphiliu... 135 3e-30 UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaer... 135 3e-30 UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 135 4e-30 UniRef50_B9KPS4 23S rRNA (Uracil-5-)-methyltransferase RumA n=11... 134 9e-30 UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsoni... 133 1e-29 UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycop... 133 2e-29 UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clost... 132 2e-29 UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacte... 132 2e-29 UniRef50_Q89RW4 Uncharacterized RNA methyltransferase bll2648 n=... 132 2e-29 UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimo... 132 3e-29 UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1... 132 3e-29 UniRef50_C7JBP0 Ribosomal RNA large subunit 23S/tRNA (Uracil-5-)... 132 3e-29 UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 131 5e-29 UniRef50_Q28WA9 (Uracil-5)-methyltransferase n=24 Tax=Rhodobacte... 131 6e-29 >UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Enterobacteriaceae RepID=RUMA_ENTS8 Length = 432 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/431 (75%), Positives = 369/431 (85%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MAQFYSAKRR TTR+IITV+ + LD+FGQGVARH+GK LFI GLLP E AEV ++EDKKQ Sbjct: 1 MAQFYSAKRRVTTREIITVTTDGLDAFGQGVARHHGKALFIAGLLPGERAEVVLSEDKKQ 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI 120 +AR V +RLS+SPERETPRCPHFGVCGGCQQQHASV LQQRSK+ AL R+MK +V EVI Sbjct: 61 FARGDVKKRLSESPERETPRCPHFGVCGGCQQQHASVALQQRSKAQALCRMMKREVDEVI 120 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + WGYRRRARLSLN+ P+ LQMGFRKAGS+D+VDV +CP+L P+LEALLPK+R CL Sbjct: 121 SGPAWGYRRRARLSLNFTPRKPGLQMGFRKAGSNDLVDVHRCPVLVPRLEALLPKLRDCL 180 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 SL +RHLGHVELV TSG LM+LRH PLS+ADREKLE FSHSEG+ LYLAP S+ LE Sbjct: 181 SSLDGVRHLGHVELVDVTSGPLMVLRHLKPLSAADREKLECFSHSEGVALYLAPQSDTLE 240 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 ++GEMPWY+S+GLRLTFSPRDFIQVN VNQ+MVARALEWL++QP +RVLDLFCGMGNF Sbjct: 241 HLNGEMPWYESDGLRLTFSPRDFIQVNDAVNQQMVARALEWLEIQPGERVLDLFCGMGNF 300 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 TLPLA +A SVVGVEGV ALVEKG NA LN L+NVTF+ NLEEDVT+QPWA+ GFDKV Sbjct: 301 TLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQPWAQQGFDKV 360 Query: 361 LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 LLDPARAGAAGVMQ I+KL+P R+VYVSCNPATL RDSE LL AGY RLAMLDMFPHT Sbjct: 361 LLDPARAGAAGVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHT 420 Query: 421 GHLESMVLFSR 431 GHLESM LF R Sbjct: 421 GHLESMALFER 431 >UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=131 Tax=Enterobacteriaceae RepID=RUMA_PECCP Length = 449 Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust. Identities = 274/440 (62%), Positives = 338/440 (76%), Gaps = 11/440 (2%) Query: 1 MAQFYSAKRRTTTRQII-----TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVT 55 MAQFYS RR TTR+ I TV+V LD FGQGVARH GKT+F+ G+LP E AEV +T Sbjct: 1 MAQFYSPNRRVTTRKAIPAKNLTVTVTSLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLT 60 Query: 56 EDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD 115 EDK+Q++ AK+ R L+ SP+R P+CPHF CGGCQQQHA + LQQ SK+AAL RLM + Sbjct: 61 EDKRQFSHAKLKRLLTHSPQRVEPQCPHFTRCGGCQQQHADITLQQSSKTAALMRLMTRE 120 Query: 116 V------SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQL 169 + +IA P+ YRRRARL+L + K Q+L MG+R++ S D+VD+K CP+L P+L Sbjct: 121 TGAELPDASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPEL 180 Query: 170 EALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD 229 EALL +R CL L+A++ LGHVELVQA +G L++LRH PL AD + L F+ +G+ Sbjct: 181 EALLQPLRDCLSRLKAVKRLGHVELVQAENGPLLVLRHLDPLHPADEQALRDFAEQQGVS 240 Query: 230 LYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 +YLAPD++ L + G+ P Y GL L FSPRDFIQVN VNQ+MVA+AL WLDVQP+DR Sbjct: 241 VYLAPDADSLTCLHGDEPVYLVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDR 300 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 +LDLFCGMGNFTLPLA +AASVVGVEGV ALVEKG++NAR N L NVTF+H+NLE+DVT+ Sbjct: 301 ILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQ 360 Query: 350 QPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 QPW GFDK+LLDPARAGAAGVM+QI +L P R+VYVSCN TLARDS+ LL AG+T+ Sbjct: 361 QPWVAQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLV 420 Query: 410 RLAMLDMFPHTGHLESMVLF 429 +AMLDMFPHTGHLESM LF Sbjct: 421 NVAMLDMFPHTGHLESMALF 440 >UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81 Tax=Gammaproteobacteria RepID=RUMA_VIBSL Length = 442 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 216/443 (48%), Positives = 281/443 (63%), Gaps = 14/443 (3%) Query: 1 MAQFYSAKRRT---TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTED 57 MA+F+ K++T T Q +V V +D G G+A K +FI G LP E + +TE Sbjct: 1 MARFFQPKKKTQLETKHQ--SVLVERMDHNGAGIAYQKNKPVFIDGALPGEKVVIQLTES 58 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-KHDV 116 K +++RAK+++ L S R P C HF CGGC QH Q KS +L LM K+ Sbjct: 59 KSKFSRAKLIKLLQPSELRLKPFCKHFNQCGGCHLQHLGYSSQVEHKSQSLTHLMSKYQT 118 Query: 117 SEVIADVPW-----GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 + +P GYRRRAR+SL KTQ LQ GFRK S I ++ C +L P+L Sbjct: 119 ANTEVALPIVGDESGYRRRARISLFVDKKTQLLQFGFRKKQSKQIENITDCAVLDPRLNV 178 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADRE---KLERFSHSEGL 228 LLPK+++ L + ++ LGHVELV +G +M+LRH PL D + L + EG Sbjct: 179 LLPKLKSLLNTFSSLTSLGHVELVLGDTGPVMVLRHLKPLVEKDEQALMTLMTLAKEEGA 238 Query: 229 DLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 LY P+++ L + G+ P Y G+ L F P FIQVN VNQ+MVA+A+EWL+ Q ++ Sbjct: 239 TLYSMPETDKLVRLVGDAPSYSETGVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADE 298 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 RVLDLFCG+GNF+LP+A Q+A VVGVEGV +V++ NA LN L N FY NLEED++ Sbjct: 299 RVLDLFCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLS 358 Query: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 Q WAK FDKVLLDPARAGA+G++ QI L R+VYVSCNPATLARDSE+L K GY + Sbjct: 359 SQLWAKEKFDKVLLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQL 418 Query: 409 ARLAMLDMFPHTGHLESMVLFSR 431 A+L MLDMFPHT HLESM LF + Sbjct: 419 AKLGMLDMFPHTSHLESMALFIK 441 >UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 Tax=Shewanella RepID=RUMA_SHEPA Length = 445 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 203/442 (45%), Positives = 283/442 (64%), Gaps = 14/442 (3%) Query: 1 MAQFYSAK--RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58 MAQF+ AK R +++ V LD G G+A H+GK +FI G LP E V +TE K Sbjct: 1 MAQFFKAKPNRSKQLSSKLSLKVTQLDHLGAGIAHHDGKIVFINGALPDETVSVQLTEQK 60 Query: 59 KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---- 114 K+++R K+++ S ER TP CPHF CGGC QH ++ Q++ K+ L L+ Sbjct: 61 KKFSRGKLLKIEKRSTERVTPPCPHFDKCGGCDLQHLDIEAQRKHKANTLVDLVNKFAQT 120 Query: 115 DVSEVIADVP---WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 SEV A + W YRRRARL+ + T+ + +GFR + SSD+V+++ C +LA L A Sbjct: 121 QASEVCAPLSGDAWHYRRRARLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSA 180 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L+P + L L + LGHVEL QA +G ++LR T LS D+ +L F++ + + Sbjct: 181 LIPDLAFMLNQLSGKKALGHVELTQADNGNFVVLRVTKVLSDKDKARLVEFANKHEVIVL 240 Query: 232 LAPDSEILETV--SGEMPWYDSNG--LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 L D E + +GE P+Y +G ++L FSP +FIQVN VNQ MV++A+EWL + Sbjct: 241 LQDDDAQCEHLNGAGEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAG 300 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 +RVLDLFCG+GNF+LPLA A V+GVEGV A+VE+ + NA+ +GL V FYH +L D+ Sbjct: 301 ERVLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLSADL 360 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 +K+PW DK+L+DPARAGA MQ + KL+P +VYVSCNPA+LARDSE +LK GY Sbjct: 361 SKEPWL-GKVDKMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQ 419 Query: 408 IARLAMLDMFPHTGHLESMVLF 429 + ++ ++DMFP T HLESM LF Sbjct: 420 LKKIGLIDMFPQTHHLESMALF 441 >UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36 Tax=Bacteria RepID=RUMA_MANSM Length = 440 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/422 (44%), Positives = 273/422 (64%), Gaps = 8/422 (1%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + DLD G GVA+ GKT F+ LP E + + E+K+Q+ A + L S +R Sbjct: 18 MEVEILDLDYQGLGVAKIQGKTWFVENALPGEKVRIKIKEEKRQFGLATTKKILEASAQR 77 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP------WGYRRR 130 +TP+C + CGGCQ QH V++Q+ +K AL R + E I +P +GYRRR Sbjct: 78 QTPKCQYASRCGGCQNQHIPVEMQREAKQKALFRRLLKLQPEGIEFMPMIVGEAFGYRRR 137 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 RLS+ + K ++L++GFR+ S+ IV ++QC ++ P L +L K+ A L ++LG Sbjct: 138 VRLSMLFDGKLKRLEIGFRQKNSAQIVHIEQCEVIEPALNKILSKLTALLSRFSQPKNLG 197 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYD 250 H+ELV A +G M+LR++ L+ DR L F+ E L L+L D E E + G+ P+Y Sbjct: 198 HIELVAADNGVAMLLRYSGKLTENDRTLLLDFAVREELMLFLQ-DDEKTEQIYGQPPFYQ 256 Query: 251 -SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 ++ L+L F RDFIQVN+ +NQ+M+ AL+WLDVQ +D VLDLFCGMGNFTLPL+ + Sbjct: 257 LADNLQLQFDIRDFIQVNSLLNQRMITAALDWLDVQKQDHVLDLFCGMGNFTLPLSRRVK 316 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 S VG+EG+ A+VEK + NA N QNV FY +L+++ + WA F+K+LLDP R GA Sbjct: 317 SAVGIEGISAMVEKAKANAERNQCQNVQFYRADLDQNFADEVWATEPFNKILLDPPRTGA 376 Query: 370 AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 A + + +L+ +I+YVSCNPATL RD+E LL + Y + ++AM+DMFPHTGHLES+ LF Sbjct: 377 AFALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVAMIDMFPHTGHLESITLF 436 Query: 430 SR 431 + Sbjct: 437 EK 438 >UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14 Tax=Shewanella RepID=RUMA_SHEDO Length = 468 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/466 (42%), Positives = 281/466 (60%), Gaps = 39/466 (8%) Query: 1 MAQFYSAKRRTTTRQI---ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTED 57 MAQF+ K ++Q+ ++++V LD G G+A+H GK +FIP LP E V +T+ Sbjct: 1 MAQFFKEKA-NKSKQLSPKLSLNVTQLDHLGAGMAQHQGKVVFIPQALPGERVSVQLTDQ 59 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-KHDV 116 KK +A+AK+++ SPER CPH+G CGGC QH ++D QQ K +L LM K Sbjct: 60 KKSFAKAKLIKIEQQSPERADASCPHYGHCGGCDLQHLALDAQQNHKQQSLNELMVKFSG 119 Query: 117 SEVI---------ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAP 167 S VI PW YRRRARL+ + + L++GFR S IV +KQCP+LA Sbjct: 120 SPVIDPQVQAAPLVSPPWHYRRRARLATYFNNNDKSLKLGFRALSSKQIVPIKQCPVLAE 179 Query: 168 QLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEG 227 L AL+ L L+A LGH+EL QA +GT +LR T L +AD L F+ ++G Sbjct: 180 PLSALINPFSLLLARLKAKASLGHLELTQADNGTFAVLRVTKVLPAADIRALASFALTQG 239 Query: 228 LDLYLAPDSEILETVSGEMPWYDSNGLRLT-------------------FSPRDFIQVNA 268 ++L L DS L V P D ++ F+P +F+QVNA Sbjct: 240 INLLLQDDSGALTDVMTMAPAEDEGATQVEQSALTLPEYALSQGQVSCQFTPGNFVQVNA 299 Query: 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAAS-----VVGVEGVPALVEK 323 VNQ+MV +A+ WLD+Q +RVLDLFCG+GNF+L LA + + V+GVEGVP +V++ Sbjct: 300 EVNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQ 359 Query: 324 GQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIR 383 ++NA+ N L N++FYH +L D++ + W DK+LLDPARAGA +Q + K++P + Sbjct: 360 ARENAKRNNLANLSFYHADLSADLSNEKWL-GKIDKLLLDPARAGAFESLQWLQKMKPKK 418 Query: 384 IVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 +VYVSCNPA+LARDS LL GY + +L+M+DMFP T H+E+M LF Sbjct: 419 VVYVSCNPASLARDSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALF 464 >UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 Tax=Psychromonas RepID=RUMA_PSYIN Length = 444 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/446 (43%), Positives = 275/446 (61%), Gaps = 19/446 (4%) Query: 1 MAQFYSAKRRTTTRQII--TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58 MAQF+ A + + I + V LD G+G+A K LFI G L E EV + E K Sbjct: 1 MAQFFKAAPTNSIKNHILKNIKVEKLDHRGRGLAYFQNKPLFIDGALAGELLEVQIVESK 60 Query: 59 KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE 118 K+Y++ K+ + + S R T CPH+ CGGC QH + Q + KS L L + + Sbjct: 61 KRYSKGKIKKIIKASELRITAACPHYQECGGCDLQHLNQAAQIQIKSDGLLSLFQRFAKK 120 Query: 119 V-------IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 V I D W YRR AR L + K +QL+MG R+A S++++D K CP+L P+LE Sbjct: 121 VPQQLEKPIIDKAWEYRRTARFGLQFDKKNKQLKMGLRRAQSNELIDQKVCPVLLPELEC 180 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L+P ++ L SLQ HLGHVEL+ A G +++LRH L+S D + + FS + ++ + Sbjct: 181 LIPPLKILLNSLQCKAHLGHVELLYADQGAVVLLRHMKTLTSPDLQLITAFSALQKVNFF 240 Query: 232 LAPDSEILETVSGE------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 S ++GE +P +D + L+F+P DF+QVN+ +N+KMV++A++WL ++ Sbjct: 241 GQASSNQSVCLAGEANLSYRLPEWDCS---LSFTPTDFLQVNSDINKKMVSQAMQWLALE 297 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE- 344 D VLDLFCG+GNFTLP+A Q SVVG+EGV +V++ NA+LN LQN FY +L Sbjct: 298 KNDSVLDLFCGLGNFTLPIARQVESVVGIEGVQQMVDRATANAQLNNLQNARFYQADLSG 357 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 E++ +Q WA F+KVLLDPARAGA + I + +P I+YVSC+P TLARDS+ LL Sbjct: 358 ENLIEQEWANQNFNKVLLDPARAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDK 417 Query: 405 GYTIARLAMLDMFPHTGHLESMVLFS 430 GY + +L +LDMFP T H+ESM LF+ Sbjct: 418 GYKLDKLGLLDMFPQTAHMESMALFT 443 >UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10 Tax=Gammaproteobacteria RepID=RUMA_MARAV Length = 449 Score = 330 bits (847), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 174/446 (39%), Positives = 250/446 (56%), Gaps = 26/446 (5%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 +R+ ++ + + L G+G+AR +GKT F+ G LP E + + ++ + Sbjct: 5 RRKVLPKEPVRCEIETLSHDGRGIARADGKTQFVDGALPGETVMAKMVRTRSRFDELRTT 64 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--------VSEV 119 L +P+R+ P C +CGGC QH S D Q R K L H V+ + Sbjct: 65 EVLEAAPDRQQPPCEFADLCGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPM 124 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 + GYRR+ARL + Y+ + + +GFR+ +S + D+ +C +L P++ + +R Sbjct: 125 RSPDSLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLREL 184 Query: 180 LGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEIL 239 L + A + VE+ M+ R+ L DREKL F + L +YL P Sbjct: 185 LHGMAAFDRIAQVEVACGDDTAAMVFRNMDDLVPDDREKLIAFGQAHDLHIYLQPKGP-- 242 Query: 240 ETVSGEMPWYDSNG--------------LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 +TV W +S G L + F P DF QVNAG+N+ MV RA+EWLDVQ Sbjct: 243 DTV--HRIWPESGGRDDERLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQ 300 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 P +RVLDLFCG+GNFTLPLA + VVGVEG A+V +G++NARLN L NV F+ +L Sbjct: 301 PGERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADLHG 360 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG 405 D T Q WAK GFDK+L+DP R+GA + + + RIVYVSCNPATLARD+ +++ G Sbjct: 361 DFTGQSWAKEGFDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNG 420 Query: 406 YTIARLAMLDMFPHTGHLESMVLFSR 431 Y + + ++DMFPHT H+ES+ LF R Sbjct: 421 YRLVQAGVMDMFPHTTHVESIALFER 446 >UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBR5_TOLAT Length = 440 Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 177/440 (40%), Positives = 247/440 (56%), Gaps = 10/440 (2%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M QF+ K + Q + +++++LD GV R+ GK F+ G+LP E V +TE KKQ Sbjct: 1 MVQFFQPKPKALPTQAVEITIDNLDHHLTGVGRYQGKACFVEGVLPGEKVSVQITEQKKQ 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH----DV 116 YA A++ + + S +R P CP F CGGC Q +Q ++K + RL + D+ Sbjct: 61 YAHARLRQVIEPSADRCEPFCPAFKQCGGCNAQMMPQAMQCQAKQQGVQRLFRQLAKIDL 120 Query: 117 SE---VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + + P YRR RL++ Y + + +GFR+ S +V++ CP+L L AL+ Sbjct: 121 PAPLWIESSAPQAYRRVCRLAVKYDKNKRCVLVGFRQKQSQALVEINSCPVLTAALSALI 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 +R + L + R +GH+EL + SG M+LRH D+E L F+ LYL Sbjct: 181 VPLRTLINELSSARDVGHIELYETESGLAMLLRHNGRPPVKDKELLLAFALQHDCALYLQ 240 Query: 234 PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 + +Y +GLRL F P DF+QVN VNQ++V EWL D VLDL Sbjct: 241 TTGYPEPLADVKPSFYQLDGLRLYFQPGDFLQVNPQVNQRLVNYVREWLAPTATDNVLDL 300 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE--DVTKQP 351 FCG+GNFTLPLA +AASV G+EGV +V++ NA N L N F+ +L + + Sbjct: 301 FCGIGNFTLPLAREAASVTGIEGVDEMVQRATHNAEQNQLVNTGFHRADLTKMAEYANAG 360 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 W + +D VLLDP R GA VM + K RIVYVSCNP T ARD ALL+ GYT+ + Sbjct: 361 WQQQCYDLVLLDPGRTGAEAVMPWLAKSGARRIVYVSCNPVTAARDC-ALLQPGYTLKQW 419 Query: 412 AMLDMFPHTGHLESMVLFSR 431 +LDMFPHTGH+ES+ LF R Sbjct: 420 GLLDMFPHTGHVESLFLFER 439 >UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marinomonas RepID=A6VUQ2_MARMS Length = 440 Score = 316 bits (810), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 169/423 (39%), Positives = 253/423 (59%), Gaps = 8/423 (1%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I T V+ L +GVAR GK FI G LP E E V + +++ A +V + S Sbjct: 21 IQTFEVDGLTHEAKGVARLQGKVTFIEGALPGETVEAQVNKAGRRFDEAVLVNIIEPSVY 80 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS----EVIADVPWGYRRRA 131 R P C HF +CGGC QH + + Q +K+ L +++ ++ E ++D P GYRRRA Sbjct: 81 RVEPSCQHFNLCGGCSFQHLANEQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRA 140 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGH 191 RL+++ K ++ +GFR S +I+ + QC +L P L++ ++ L LGH Sbjct: 141 RLAIDI--KKGRMVLGFRGKASKEIISIDQCVVLTPNLQSTFLLLKLKLLENDLAGVLGH 198 Query: 192 VELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL-APDSEILETVSGEMPWYD 250 VEL++ T G + R T+P+S + E ++ + LY AP E +M +YD Sbjct: 199 VELLEDTKGVSALFRLTSPISDELKNAWEDWAEKGRVALYWQAPKVGKAEVALEKMRYYD 258 Query: 251 SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAAS 310 LRL + P+DFIQVNA +NQKMV +A++WL+ +D +LDLFCG+GNF+LPLA A + Sbjct: 259 LGDLRLKYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDVILDLFCGVGNFSLPLAVHAQA 318 Query: 311 VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA 370 V+GVE +VE ++NAR+NG N++F +L + V + + K KVLLDP RAGA Sbjct: 319 VIGVEVQETMVEAARENARVNGFDNLSFVAADLTKPVNNELF-KQTITKVLLDPPRAGAF 377 Query: 371 GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 + IIK+ P +I+YVSCN +TLARD+E L+ GY + R++++DMFP T H+E+M+L Sbjct: 378 EFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLMDMFPQTSHVETMMLLQ 437 Query: 431 RVK 433 + K Sbjct: 438 KKK 440 >UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Colwellia psychrerythraea 34H RepID=RUMA_COLP3 Length = 469 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 171/468 (36%), Positives = 260/468 (55%), Gaps = 38/468 (8%) Query: 1 MAQFYSAKRR-TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59 MA ++ A + T+ Q +TV+V+ LD G GVAR K +FI G+LP E +V V E K Sbjct: 1 MANYFKAAVKPKTSNQRLTVTVDKLDMNGVGVARWQNKPIFIAGVLPDEIVDVKVIEQKS 60 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE- 118 +YARAK++ S R P+C HFG+CGGC Q +++ Q K + L S Sbjct: 61 KYARAKLISIDKQSASRVIPQCQHFGLCGGCDLQMLALEEQLLFKQQKITDLFSRSFSTQ 120 Query: 119 ---------------VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCP 163 I PW YRR+AR+ + + K Q +GFR+ ++ + +K CP Sbjct: 121 NITPEINTAHLPWQAAIKSSPWHYRRKARIGVQF-DKNAQATIGFRQKSTNQLAAIKSCP 179 Query: 164 ILAPQLEALLPKVRACLGSLQAMRHLGHVELVQA----TSG---------TLMILRHTAP 210 +L L A+ P ++ L L +GH+E++QA TS ++++R P Sbjct: 180 VLVEPLSAIFPLLKKLLAQLTVKSAIGHIEVIQADISDTSSADKIQKDNQVVVVVRQLKP 239 Query: 211 LSSADREKLERFSHSEGLDLYL------APDSEILETVSGEMPWYDSNGLRLTFSPRDFI 264 ++ D + ++ + + P ++I S E+ + ++ ++ FS DFI Sbjct: 240 MNDTDIGLWQLYAQRHCWHVIIDDGNKQLPLADIKGGDSFELSYELTDTSKVYFSSNDFI 299 Query: 265 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 Q+N VN M+++AL WL++ D VLDLFCG+GNF+L LA A VVGVEG+ +V+K Sbjct: 300 QINHQVNNAMISQALAWLNILATDNVLDLFCGLGNFSLALAKHAKRVVGVEGMQTMVDKA 359 Query: 325 QQNARLNGLQNVTFYHENLEEDVTKQPWAKNG-FDKVLLDPARAGAAGVMQQIIKLEPIR 383 QN+ +NGL N FY +L +PW + FDKVLLDPARAGA + QI +L+ Sbjct: 360 TQNSLVNGLDNCQFYQADLNSHWLLEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIPC 419 Query: 384 IVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 ++YVSC+PATLARDS L+ GY + +++++DMF T H+E+M+LF+ Sbjct: 420 VLYVSCDPATLARDSAILVSKGYKLEKISLMDMFSQTKHVETMILFTH 467 >UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Rickettsiella grylli RepID=A8PP31_9COXI Length = 443 Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 163/439 (37%), Positives = 248/439 (56%), Gaps = 16/439 (3%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 ++ + ++ + + + G+G+A NGK FI LP E + T+ ++ Y A+ + Sbjct: 5 KKYSYKETTPIFITGISHEGRGIAHINGKITFIENALPGERVSIVYTKKRRAYDEARATQ 64 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV----SEVIADV- 123 L+ S +R P+CPHF CGGC QH + Q + K L + H + ++A V Sbjct: 65 ILNASTDRIQPQCPHFNQCGGCNLQHLNHQAQLQHKEKILVNQLTHVAKTKPTSLLAPVM 124 Query: 124 --PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 WGYRRRARL + Y+ K Q + +GFR+ + ++ C L +++ LL ++ + Sbjct: 125 ATGWGYRRRARLGVKYVAKKQAVLVGFREKNGHYLAQIQTCKTLDFRVDRLLIPLQQLIQ 184 Query: 182 SLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSE-ILE 240 SL A + +E+ ++ RH PL+++D L+ F+ + LYL P +E Sbjct: 185 SLNAFHDIPQIEVALGDEILGLVFRHLVPLNNSDVLALKNFAKKYSVQLYLQPGNEKTTH 244 Query: 241 TVSGEMPWYDS--------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 + E P S L F P FIQ+NA +NQ M+ A+E L DR+LD Sbjct: 245 CIWPENPQLLSYRLQNKAHRSLEFFFEPHHFIQINATINQAMIQHAIELLSPHFSDRILD 304 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 LFCG+GNF+LPLA + SVVG+EG ALVE+ + NAR N + N FY +L + K+ W Sbjct: 305 LFCGLGNFSLPLALRCQSVVGIEGHSALVEQAKINARHNAINNTQFYTADLTGSILKEVW 364 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 A+ F+K+LLDP R+GA V+QQI + + ++VY+SCNPATLARDSE L+K GY + R Sbjct: 365 AQQTFNKILLDPPRSGALEVIQQIARWKVEKMVYISCNPATLARDSEELIKQGYHLERAG 424 Query: 413 MLDMFPHTGHLESMVLFSR 431 ++DMFP T H E++ LF++ Sbjct: 425 IMDMFPQTHHSEAICLFTQ 443 >UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Alteromonadales RepID=RUMA_PSEHT Length = 441 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 153/440 (34%), Positives = 248/440 (56%), Gaps = 9/440 (2%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MAQ + A ++ +Q + + + +D G+G+A+HN K F+ LP E + T+ DK + Sbjct: 1 MAQIFKATKKPLKQQSLVLDITAMDHHGRGIAKHNNKVCFVSNALPNEQVKATIIADKAR 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--DVSE 118 Y+ A+ + L S R P C H+ CGGCQ QH Q K A+++L + + E Sbjct: 61 YSEAQTHKVLQASEYRVAPFCEHYNQCGGCQLQHLDSSQQVVEKQIAVSKLFEKFAKLDE 120 Query: 119 VIADVPW-----GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + P YRR ARL++ + K +++ +G+R +GS I+ + +CP+L+ + Sbjct: 121 LNWQAPLLSKATHYRRSARLAVMFDKKAKKMHVGYRASGSKSIISINECPVLSEVFANVF 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 + +A+ + H++L Q +I+RHT P+S + + + + + L Sbjct: 181 TVFDNLINQHKALHSVSHLQLCQGDEQNFVIIRHTKPISEDIKALVAQSAAEQQWQLVWQ 240 Query: 234 PDSEILETVSGEMPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 +SE++E MP+Y + GL+ F +FIQVNA VNQ M+ +A WL ++ ++ VL Sbjct: 241 SESEVIEHSHLAMPFYALEELGLKFEFGLNNFIQVNASVNQAMLKQAQNWLALKGDENVL 300 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DLFCG+GNF+L LA QA +V+GVEGV + V QNA N + N F +L + Sbjct: 301 DLFCGIGNFSLVLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLTNKIETAS 360 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 W D ++LDP+R GA V++Q+ + I+YVSC+P TLARDS + +AG+ + ++ Sbjct: 361 WFNKNLDVLVLDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKI 420 Query: 412 AMLDMFPHTGHLESMVLFSR 431 +++MFPHTGH+E+M LF R Sbjct: 421 GLMNMFPHTGHIETMALFQR 440 >UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHH5_9GAMM Length = 449 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 161/435 (37%), Positives = 247/435 (56%), Gaps = 9/435 (2%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 S K + + T+ + L +G+A+HNGKT+F+ G L E +++ +++ A+ Sbjct: 15 SPKSKASMDYPETLEIIGLSHEARGIAKHNGKTIFVTGALTGETVRYEISKKHRRFDEAE 74 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHD---VSE 118 V ++ SP R P C ++G CGGC QH Q ++K + L RL K + + Sbjct: 75 CVEVITPSPNRVEPFCQYYGQCGGCDLQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTP 134 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 ++ YRR R+ +N L + +GFR+ GSS ++ V CPIL + +L K++A Sbjct: 135 PLSGSDQEYRRSCRIGINQLMRDGTPIIGFRRRGSSKLLQVDNCPILINPINKILGKLKA 194 Query: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI 238 L + + + H EL M LR PL + L++ + LY +I Sbjct: 195 VLSEADSCKEITHAELSMGDQQGAMTLRIKKPLPESLSSSLQKLAEDNEFRLYFDNGQQI 254 Query: 239 LETVSGEMPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 Y + + ++ F P DFIQVNA VN +M+ RA++WLD++ DRVLDLF G Sbjct: 255 NAFGDEADLSYQLEKSETQIGFKPGDFIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSG 314 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +GNF+LPLAT+A SV+GVEGV +V++ Q NA+ GL N FY +L +D+ PW K G Sbjct: 315 VGNFSLPLATKAGSVIGVEGVEDMVQRAQNNAKQAGLNNCEFYRADLSKDLKALPWYKQG 374 Query: 357 FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 F K+L+DP R GA V++Q+ + + +I+YVSCNP+ LARD L++ GY ++ ++DM Sbjct: 375 FSKILIDPPRTGALEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDM 434 Query: 417 FPHTGHLESMVLFSR 431 FPHT H+ES+VLF + Sbjct: 435 FPHTSHVESLVLFEK 449 >UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22 Tax=Gammaproteobacteria RepID=RUMA_XANC8 Length = 444 Score = 310 bits (795), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 171/448 (38%), Positives = 248/448 (55%), Gaps = 34/448 (7%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNG---KTLFIPGLLPQENAEVTVTEDKKQYARAK 65 R R ++ DL G+GVAR +G K FI G LP E T + + AK Sbjct: 5 RNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAK 64 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP- 124 V L SP+R PRCPHFGVC GC QH L++ + A R++ ++ + P Sbjct: 65 TVEVLQASPQRVAPRCPHFGVCAGCVLQH----LEESQQIVAKQRVLMDNLERIGHVTPQ 120 Query: 125 ----------WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLP 174 WGYRR+ R S+ + K + +GFR+ + D+ C + PQ+ +P Sbjct: 121 TVLPALVGDTWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIP 180 Query: 175 KVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 ++ A + + R + +E + + +RH PLS+ D + L F+ + ++L P Sbjct: 181 QLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQP 240 Query: 235 ---DS-------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 DS E+ +S +P +D + L F P DFIQVNA +NQKM+A AL LD Sbjct: 241 GGVDSVHPLWPQEV--PLSFRLPKWD---VELAFRPLDFIQVNASLNQKMIAHALALLDA 295 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 +P+DRVLDLFCG+GNFTLPLA VVGVEG LV + ++NA+ NGL N FY +L Sbjct: 296 KPDDRVLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLT 355 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-K 403 +D + W + GFDK+LLDP R+GA V+QQ+ + RIVYVSC+P +LARD+ L+ + Sbjct: 356 QDQRQTAWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNE 415 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSR 431 G+++ +DMFPHT H+ES+ +F + Sbjct: 416 QGFSLLSAGAMDMFPHTAHVESIAVFEK 443 >UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chromatiales RepID=D0L0T9_HALNC Length = 442 Score = 310 bits (795), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 165/423 (39%), Positives = 237/423 (56%), Gaps = 20/423 (4%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+GV+ +GK FI LP E T KK + V SP+R TP CPHF C Sbjct: 22 GRGVSHIDGKATFIGRALPGETVRFIYTNRKKHFDEGDTVAVEQTSPDRITPPCPHFDQC 81 Query: 88 GGCQQQHASVDLQQRSKSAAL-------ARLMKHDVSEVIADVPWGYRRRARLSLNYLPK 140 GGC QH + + Q +K AL ++ V +A WGYRR+ARL + Y+ K Sbjct: 82 GGCSMQHLTSEKQLATKEQALLDQLQRIGKVSPATVLPALARANWGYRRKARLGVKYVQK 141 Query: 141 TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSG 200 ++ +GFR+ + + D++ C +L P++ L ++ + SL+A + +E+ Sbjct: 142 KGRVIVGFRERHTHFLSDLQNCRVLDPRVGERLTEIGEIIHSLEARERIPQIEVACGDDR 201 Query: 201 TLMILRHTAPLSSADREKLERFSHSEGLDLYLAP---------DSEILETVSGEMPWYDS 251 ++ R+ PLS +D+EKL F EG D+YL P D + ++ P +D Sbjct: 202 VALVFRNLDPLSQSDKEKLRNFGTQEGFDIYLQPGSNDSVHPLDKAHVAPLTYAHPSFD- 260 Query: 252 NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASV 311 + + F+P DFIQ+N VN+ M+ +ALEWLDVQP D VLDLF G+GNFTLP+A +AA V Sbjct: 261 --VSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDHVLDLFAGLGNFTLPIARKAAKV 318 Query: 312 VGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG 371 VE +V++G Q+A NG+ N NL E W + +D+VLLDP RAGA Sbjct: 319 TAVELDEHMVKRGAQSAAANGITNTEHVIGNLFEPDPTHLWMQQTYDRVLLDPPRAGAEA 378 Query: 372 VMQQIIKLEPIRIVYVSCNPATLARDSEALLKA-GYTIARLAMLDMFPHTGHLESMVLFS 430 +M I + P RIVYVSC+P +LARD+ L++ GY + ++DMFPHT H+ESM +F Sbjct: 379 MMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIAAGVMDMFPHTSHIESMAVFE 438 Query: 431 RVK 433 R K Sbjct: 439 RAK 441 >UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25 Tax=Pseudomonadaceae RepID=RUMA_PSEPF Length = 461 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 177/420 (42%), Positives = 243/420 (57%), Gaps = 10/420 (2%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 +S+ L + G+G+A GKT F+ G L E E V + A+ R S S R Sbjct: 29 LSIERLANDGRGIAFFEGKTWFVLGALAGEEVEARVLGAHGKVVEARTERVFSASELRRP 88 Query: 79 PRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADVP---WGYRRRA 131 C H G CGGC QH + L+QR + L+R+ + E A + +GYRRRA Sbjct: 89 APCQHAGRCGGCSVQHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRA 148 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGH 191 R+++ + K ++L++GFR AGS DIV + +CP+L L+ ++ ++ L L + LGH Sbjct: 149 RIAVRWDSKAKKLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRRLSKPQALGH 208 Query: 192 VELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY-- 249 VEL +S ++LRH APLS AD L+ F L+L + E + Y Sbjct: 209 VELFSGSS-LAVLLRHMAPLSEADLTILKDFCAFHEAQLWLHGEGEPQPVDDAQSLGYHL 267 Query: 250 DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 + L+L + P DFIQVNAGVN+ MVA+ALEWL ++RVLDLFCG+GNF LPLA A Sbjct: 268 EQWDLQLAYRPGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCGLGNFALPLAKAAR 327 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 VV VEGV +V++ NA N L N F+ +L + +T W NGF VLLDP R GA Sbjct: 328 EVVAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQPLTDAEWIGNGFSAVLLDPPRDGA 387 Query: 370 AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 V++++ L R+VYVSCNPATLARD+ L+K GY + R +LDMFP T H+E+M LF Sbjct: 388 FEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQTAHVEAMALF 447 >UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 Tax=Legionella RepID=RUMA_LEGPL Length = 444 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 157/433 (36%), Positives = 245/433 (56%), Gaps = 22/433 (5%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 T + +L G+G+AR NGK FI G LP E E T KK + K++ + S R Sbjct: 14 TARIVNLSHDGRGIARINGKATFIQGALPGEVVEFQYTRVKKDFDEGKLLSIVEPSTLRV 73 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-------HDVSEVIADVPWGYRRR 130 P+CPH+ +CGGC QH S + Q R K + L L+ V + PW YR + Sbjct: 74 EPKCPHYQMCGGCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNK 133 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSD-IVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 ARLS ++ K Q +GFR+ + I ++ QCPIL +++ + +R + +++ + + Sbjct: 134 ARLSTRFVEKKQSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMEDKQCI 193 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD----------SEIL 239 +E+ + +I R+ PL+ D K+ +F+ ++L P S+ Sbjct: 194 AQIEVAAGDNEVALIFRNLTPLTEQDESKIRKFAQQFQYKVFLQPGGLDSVFCFYPSDAH 253 Query: 240 ETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN 299 +S E+P Y + F P DF QVNA +N+KMV +A++ ++++ D VLDLFCG+GN Sbjct: 254 AYLSYELPDYQ---ITFQFHPNDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGN 310 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 359 F+LP+A + V+GVEG +VE+ NA+ N + NV FY NL++ + + F K Sbjct: 311 FSLPMAKHCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSK 370 Query: 360 VLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYTIARLAMLDMFP 418 VL+DP R+GA +++QI ++P RIVYVSCNP TLARD++ L+ + GY + ++DMFP Sbjct: 371 VLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFP 430 Query: 419 HTGHLESMVLFSR 431 HT H+ES+ LF + Sbjct: 431 HTAHVESIALFQK 443 >UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) n=3 Tax=Acinetobacter RepID=C0VPT5_9GAMM Length = 463 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 243/455 (53%), Gaps = 28/455 (6%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARH----------NGKTLFIPGLLPQENAEVTV 54 + AK+R + I T V G+G+A + GK +FI L E + + Sbjct: 3 HKAKQRQAHQPIYTFKVEAFSHEGRGIAHYGTHPDHPKEKQGKKVFIRNALVGETVQAKI 62 Query: 55 TEDKKQYARAKVVRRLSDSPE-RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK 113 T + A++++ ++ R P CPHFG+CGGC QH D Q K L ++ Sbjct: 63 THQTTRLEEAEMLKLEGEAATGRVEPICPHFGICGGCSLQHIHPDEQILLKQNVLQSHLQ 122 Query: 114 HDVS-------EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 H I YRRRAR+ + Y+P+ +L MGFR+ S+ + + QC +L Sbjct: 123 HFAGLQPEQWLTPIRSSKIDYRRRARIGVRYIPRQDRLVMGFREHHSNHLTTIHQCKVLD 182 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE 226 L +P++R CL L A H+GHVEL +++RH L+ +D L +F+ Sbjct: 183 QTLSDAIPELRKCLEGLMAKAHIGHVELAMGDHEVALLIRHLEELNVSDVNHLRQFALQR 242 Query: 227 GLDLYLAP---DS-EILETVSGEMPWY---DSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 LYL P DS ++ V M + D +R FSP DF QVN+ VN +M+ A Sbjct: 243 QWQLYLQPRGADSLHRVDDVQAPMRLHYHLDDFDIRFAFSPLDFTQVNSAVNARMIQLAC 302 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNGLQNV 336 E L ++ +RVLDLFCG+GNF+LPLA V+GVE +V + +NA+ N L Sbjct: 303 ELLQLKEGERVLDLFCGLGNFSLPLARCVGDTGQVIGVEASDEMVLRATENAKANSLNQA 362 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLAR 396 F+ ++L +D + PWAK GFD +L+DP R+GA VMQ + RIVYVSCNP+TLAR Sbjct: 363 IFFSQDLTKDFSHHPWAKQGFDALLIDPPRSGAFEVMQYVPSFGANRIVYVSCNPSTLAR 422 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 D+ L + GY + + A++DMF HT H+ES+ LF + Sbjct: 423 DAGVLAQHGYQLKKAAVMDMFTHTEHVESIALFEK 457 >UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase protein n=1 Tax=Xanthomonas albilineans RepID=D2U9R4_XANAL Length = 467 Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 168/440 (38%), Positives = 240/440 (54%), Gaps = 20/440 (4%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNG-KTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 R R + DL G+GVAR G K F+ G LP E T + + A+ + Sbjct: 31 RNRLDRTPFQTEIADLSHDGRGVARREGDKVAFVAGALPGEIVLAEPTARNRHFDEARTL 90 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---HDVSEVI---- 120 + L S +R PRCPHFGVC GC QH + D Q +K L ++ H +V+ Sbjct: 91 QVLQASSQRVAPRCPHFGVCAGCVLQHLAEDQQILAKQQVLTDNLERIGHVTPQVVLPAL 150 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + WGYRR+ R S+ + K + +GFR+ + D+ C + PQ+ + + + Sbjct: 151 SGASWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSVCHTVIPQVGLKVAALAELV 210 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP---DS- 236 L A R + +E + + + RH PLS D++ L F+ + ++L P DS Sbjct: 211 ERLDAKRDIPQIEFIAGDATVALTFRHMQPLSEHDQDALIAFAQAHDFAIFLQPAGVDSV 270 Query: 237 ----EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 +S +P +D + L F P DFIQVNA +NQ+M+A AL LD Q DRVLD Sbjct: 271 HPLYPQAAPLSFRLPQWD---VELAFRPLDFIQVNAVLNQQMIAHALALLDAQSGDRVLD 327 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 LFCG+GNFTLPLA VVGVEG LV + ++NA+ NGL N F+ +L +D + PW Sbjct: 328 LFCGLGNFTLPLARTVREVVGVEGDAGLVTRARENAQRNGLDNAQFFAADLTQDQRQAPW 387 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA-GYTIARL 411 + GFDK+LLDP R+GA V+QQ+ + RIVYVSC+P +LARD+ L+ G+ + Sbjct: 388 MRQGFDKLLLDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVLKAA 447 Query: 412 AMLDMFPHTGHLESMVLFSR 431 +DMFPHT H+ES+ +F R Sbjct: 448 GAMDMFPHTAHVESIAVFER 467 >UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Acinetobacter junii SH205 RepID=D0SQB6_ACIJU Length = 469 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 167/457 (36%), Positives = 248/457 (54%), Gaps = 28/457 (6%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARH----------NGKTLFIPGLLPQENAEVTV 54 + AK+R I T + G+G+A + +GK +FI L E + + Sbjct: 3 HKAKKRPVHHPIYTFDIEAFSHEGRGIAHYGTHPDHPKEKHGKKVFIRYALVGETVKAKI 62 Query: 55 TEDKKQYARAKVVRRLSDSPE-RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK 113 T + A+++ SD+ E R P C HFGVCGGC QH D Q K L ++ Sbjct: 63 TNQTTRLEEAEMITLESDASEQRVAPVCAHFGVCGGCSLQHIHPDQQIVLKQNVLKSHLE 122 Query: 114 H-------DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 H + I V YRRRAR+ + Y+PK +L MGFR+ S+ + D++QC +L Sbjct: 123 HFAGLQPEEWLAPIRSVKTDYRRRARIGVRYIPKQNRLVMGFREHHSNHLTDIQQCKVLD 182 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE 226 L L +++ L SL H+GH+EL +++RH L+ +D +L +F+ + Sbjct: 183 QVLSDSLVELKTLLESLTGKAHIGHIELAMGDDEVSLLIRHLDELNVSDVNQLRQFTLLK 242 Query: 227 GLDLYLAPDS-EILETVSGEMP------WYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 G LY + L V E + ++ FSP DF QVN+ VN +MV A Sbjct: 243 GWQLYFQSKGIDSLHRVDDEHAPMRLHYSLEDFKVKFAFSPLDFTQVNSHVNARMVQLAC 302 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNGLQNV 336 E LD++ +RVLDLFCG+GNF+LPLA + V+GVE +VE+ +NA+ N L Sbjct: 303 ELLDLKEGERVLDLFCGLGNFSLPLARCVGETGRVIGVEASDEMVERATENAQANYLTQA 362 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLAR 396 +F+ ++L +D + WAK GFD +L+DP R+GA VMQ + RIVYVSCNP+TLAR Sbjct: 363 SFFSQDLTKDFSHHSWAKQGFDALLIDPPRSGAYEVMQYVPNFGAKRIVYVSCNPSTLAR 422 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 D+ L + GY + + A++DMF HT H+ES+ LF +++ Sbjct: 423 DAGVLAQYGYQLKKAAVMDMFTHTEHVESIALFEKIE 459 >UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19 Tax=Proteobacteria RepID=RUMA_PSYCK Length = 513 Score = 296 bits (759), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 171/477 (35%), Positives = 255/477 (53%), Gaps = 57/477 (11%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARH--------------NGKTLFIPGLLPQENAEVT 53 +RR + + +++ L G+GVA + +GK +F+ LP E+A V Sbjct: 40 RRRLKDAEPLPFTIDGLSHDGRGVAVYGNGFGETDGHITDKHGKKIFVSFALPGESALVK 99 Query: 54 VTEDKKQYARAKVVRRLSD-SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM 112 +T + + VR ++ +PER P CPHFGVCGGC QH D Q K + LA ++ Sbjct: 100 ITNSRTSFEEGDAVRITANPNPERVVPPCPHFGVCGGCNLQHWQPDAQITFKQSVLAEML 159 Query: 113 KHDVSEVIADVPW---------GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCP 163 H + +A W GYR +ARL + Y+ K + +GFR+ S+ + ++ +C Sbjct: 160 VHQAN--VAPDHWLEPVVGDRLGYRTKARLGVRYVVKKETALVGFRERSSNFLAELNECH 217 Query: 164 ILAPQLEALLPKVRACLGSLQAMRHLGHVELV---------QATSGTLMILRHTAPLSSA 214 IL P++ + ++ + +L + + +EL +I+R+ PLS Sbjct: 218 ILDPRIGFEIENLKTLISTLDSRDKIAQLELAMGEHLPELPDGDQPVALIVRNLEPLSDG 277 Query: 215 DREKLERFSHSEGLDLYLAP------------DSEILETVSG----EMPWYDSNGLRLTF 258 D +KL+ F + LYL D++ L G ++P YD L F Sbjct: 278 DIDKLKVFFAARNWQLYLQSKGADSIQRIALRDTDDLSEQFGRLYYQLPEYD---LTFEF 334 Query: 259 SPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA---TQAASVVGVE 315 P DF QVN VN++M A + LD++ +RVLDLF G+GNF+LPLA + SVVGVE Sbjct: 335 IPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGSVVGVE 394 Query: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQ 375 G A+ + NAR NG+ N FY ++L D T +PWA GFD +L+DP R+GA +MQ Sbjct: 395 GSEAMTARAADNARRNGINNTEFYSQDLTHDCTDKPWANQGFDALLIDPPRSGAWEIMQY 454 Query: 376 IIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + K RIVYVSCNPATLARD++ALL+ GY + ++DMF HTGH+ES+ F ++ Sbjct: 455 LPKFNAERIVYVSCNPATLARDTKALLEQGYRLTHAGVMDMFCHTGHVESIARFEKI 511 >UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Gammaproteobacteria RepID=RUMA_FRAT1 Length = 449 Score = 294 bits (752), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 156/436 (35%), Positives = 239/436 (54%), Gaps = 19/436 (4%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I + L G+G+A+ +GKT FIP LP E + T K ++ AKVV + S Sbjct: 14 IFEAEITALSHDGRGIAKVDGKTTFIPFTLPGEVVKFEYTFTKAKFDEAKVVEYVKKSSN 73 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIAD--VP-------WG 126 R P C HF +C GC QH S D Q K L +K+ + V + +P G Sbjct: 74 RVNPPCDHFQICRGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEG 133 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR +ARL + Y+ K ++ +GFR+ + D+ +C +L P + + ++ + + +L Sbjct: 134 YRNKARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIY 193 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL---APDSEILETVS 243 +H+ +E+ + MI+RH P ++ D EKL F+ +YL PD+ Sbjct: 194 QHIAQLEIAIDDTRPAMIVRHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQ 253 Query: 244 GE-----MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 G+ + + + G+ + F P DF QVN +N+KM+ RA+E LD+ D ++DLFCG+G Sbjct: 254 GDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLG 313 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN-GF 357 NFTLP++ A +V+GVEG P +V++ ++ A N + NV FY NL E + W N + Sbjct: 314 NFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEY 373 Query: 358 DKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA-GYTIARLAMLDM 416 +K+LLDP RAGA V I K RIVYVSC+ A LARD+ L+ GY + ++DM Sbjct: 374 NKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDM 433 Query: 417 FPHTGHLESMVLFSRV 432 FPHT H+ES+ +F ++ Sbjct: 434 FPHTMHVESIAVFEKI 449 >UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31DJ1_THICR Length = 407 Score = 293 bits (751), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 168/421 (39%), Positives = 235/421 (55%), Gaps = 44/421 (10%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + +TV + L G+GV R NGK +F+ +P + AE+ +T + Y AK+VR + S Sbjct: 2 KTVTVKIETLSHDGRGVGRLNGKAIFVEEAVPGDVAEIRITGRQPSYEEAKIVRLIDSSE 61 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADV---PWGY 127 +R CPH+ CGGCQ QH S+D Q++ K++ AL++ + ++ A + Y Sbjct: 62 DRVEAFCPHYETCGGCQLQHLSIDAQRKWKASHFYTALSKAVNMKACQIEAPLVGHDHAY 121 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQL-EALLPKVRACLGSLQAM 186 RRRARL L ++ + GFR GS++IVD++QCP+L P L EAL K A L A Sbjct: 122 RRRARLVLGKNKTDKEARFGFRAKGSNEIVDIEQCPLLTPALNEALNQKRTAVLP--HAS 179 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEM 246 R L + +V A +G F + +D S Sbjct: 180 RALKEISVVDADNGI--------------------FWSDQAVD-------------SSTW 206 Query: 247 PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT 306 P Y NGL L F + F+QVNA +N++MV +AL+WLD+ E RVLDLFCG+GNFTLP+A Sbjct: 207 PSYGVNGLTLNFPAQGFVQVNAEMNEQMVNKALDWLDLNKEQRVLDLFCGVGNFTLPIAQ 266 Query: 307 QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW-AKNGFDKVLLDPA 365 Q VVG+EG LV+ Q NA + TFY +L +DVT Q W K +D+VLLDP Sbjct: 267 QVKEVVGIEGETDLVQMAQHNASRAHCEQATFYQADLFKDVTPQNWFRKQKYDRVLLDPG 326 Query: 366 RAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES 425 R GA + + + +L+ +IVYVSCN +TL RD + L K GY + + M+DMFPHT H E Sbjct: 327 RQGAYQLCKGLGQLKADKIVYVSCNASTLIRDVKELEKQGYQLKKAIMVDMFPHTSHTEV 386 Query: 426 M 426 M Sbjct: 387 M 387 >UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58 Tax=Betaproteobacteria RepID=RUMA_BORA1 Length = 476 Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 171/437 (39%), Positives = 247/437 (56%), Gaps = 31/437 (7%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + + LD +G+AR +GK +F+ G LP E K Y A+V L+ S +R Sbjct: 5 VLKIESLDLEARGIARRDGKVVFVEGALPGERVYAATVRRKPSYEIARVETVLTPSSQRV 64 Query: 78 TPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADV---PWGYRRR 130 PRCPHFGVCGGC QH + V ++QR+ + K V+ + WGYR R Sbjct: 65 EPRCPHFGVCGGCAMQHLEPTSQVAIKQRALEDTFWHVGKIRPQRVLPPLHGPTWGYRYR 124 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 ARLS+ +PK + +GF + SS + D+++C +L + LL +RA + +L + Sbjct: 125 ARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLLPLRAMIAALSRPERIP 184 Query: 191 HVELVQATSGTLMILRHTAPLSSAD---------REKLERFSHSEGLDLYLAPDSEILET 241 +E+ T ++LRH PL+ D R ++ + S+G D D +T Sbjct: 185 QIEVALGEGVTALVLRHIEPLNDHDITVLRDFAARHNVQWWLQSKGPDTVHPLDPAHGDT 244 Query: 242 VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 ++ MP + GLR+ + P DF QVN +N+ MV+RAL+ L+VQP DRV DLFCG+GNFT Sbjct: 245 LAYTMPEF---GLRMPYRPTDFTQVNHAINRSMVSRALKLLEVQPTDRVADLFCGLGNFT 301 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT-FYHENL-EEDVTKQPWAK--NGF 357 LPLATQ VGVEG AL ++ + A +GL+ T F NL E DV+ W + F Sbjct: 302 LPLATQGREAVGVEGSKALTDRALEAAARHGLEGRTRFATLNLFEVDVS---WLRGLGYF 358 Query: 358 DKVLLDPARAGAAGVMQQIIKLEPI----RIVYVSCNPATLARDSEALL-KAGYTIARLA 412 D++L+DP R GA V Q + +L P RIVYVSCNPATLARD+ ++ + GY + Sbjct: 359 DRMLIDPPREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVHEGGYVLKAAG 418 Query: 413 MLDMFPHTGHLESMVLF 429 +++MFPHTGH+ES+ +F Sbjct: 419 VINMFPHTGHVESIAVF 435 >UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Methylococcus capsulatus RepID=RUMA_METCA Length = 443 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 162/444 (36%), Positives = 241/444 (54%), Gaps = 20/444 (4%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 + KR+ + I + G+G+A +G+ +F+ G LP E+ TE K+ YA Sbjct: 3 HRGKRKPLPAEPIAAHIESFAHDGKGIAHVDGRVVFVDGALPGEDVTFVYTEIKRDYAAG 62 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK-SAALARLMKHDVSEVIADV 123 +VV ++ SP+R RC HF +CGGC Q+ S D Q K L + + E A Sbjct: 63 RVVEIVTASPDRVPARCRHFALCGGCSLQYLSEDAQIALKEDLLLDQFRRIGKVEPAAQF 122 Query: 124 P------WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 P WGYR RARL Y+ K + +GFR+ S+ IVD+ CP+L P L + Sbjct: 123 PPLRGPHWGYRSRARLGARYVAKKGRELVGFREHASAKIVDMTDCPVLHPALGERIQAFA 182 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS- 236 + L L +E T ++ R ++ D +L RF +GLD+Y+ + Sbjct: 183 ELIEGLSLRERLPQIEAAVGEERTALVFRVLEDPTAEDFARLARFGKDQGLDVYIQREGR 242 Query: 237 --------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 E +S +P ++ + F P DF QVN +N++M+ + ++ LD QPE+ Sbjct: 243 DSVAPVYPETAHDLSYSLPEWE---VTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEE 299 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 RVLDLFCG+GNFTLPLA +A V GVEG V + +NA NG+ NV F+ +L + + Sbjct: 300 RVLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPES 359 Query: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYT 407 WA + KVLLDP+R+GA ++Q + + RIVYVSCNP+TLARD+ L+ + GY Sbjct: 360 CGSWAGREYHKVLLDPSRSGALEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGYR 419 Query: 408 IARLAMLDMFPHTGHLESMVLFSR 431 + + ++DMFPHT H+ES+ +F R Sbjct: 420 LLKAGVMDMFPHTAHVESIAVFER 443 >UniRef50_A3WPS3 SAM-dependent methyltransferase n=1 Tax=Idiomarina baltica OS145 RepID=A3WPS3_9GAMM Length = 446 Score = 283 bits (725), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 180/455 (39%), Positives = 254/455 (55%), Gaps = 33/455 (7%) Query: 1 MAQFYSAK--RRTTTRQIITVSVNDLDSFGQGVAR----HNGKTLFIPGLLPQENAEVTV 54 MAQF+ K +++T+ ++T + + LD G+GV R + F+P +LP E A+ V Sbjct: 1 MAQFFKPKGRKKSTSNYVLTGTADALDHQGRGVVRLSKQGKNRVYFVPQVLPGETAQFKV 60 Query: 55 TEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK- 113 T + +++ R + S ER CP++ CGGC QH + Q+R K + L Sbjct: 61 TGQQN----TELLARQNASEERRQAPCPYYEDCGGCDLQHINETHQRRHKQQVVTELFAK 116 Query: 114 ----------HDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCP 163 H+ +IAD W YRR+ARL++ + +++GFR S IVD+ QC Sbjct: 117 MAGVRDELPWHET--LIAD-DWQYRRKARLAIYQRNTAEPMRLGFRAHSSKHIVDIPQCV 173 Query: 164 ILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFS 223 +L L +L +R+ L Q LGH+EL++A L LR T LSS + L FS Sbjct: 174 VLDSALNRVLDDLRSILYEAQIGPKLGHIELIKARDVHL-CLRITQSLSSEQEKCLRAFS 232 Query: 224 HSEGLDLYLAPDSEILETVSGEMPWYDS--NGLRLTFSPRDFIQVNAGVNQKMVARALEW 281 L+L D + + +++ ++ +D +G RL F P +FIQVNA VNQ+MV +AL W Sbjct: 233 SDSQCTLWL-DDGQQITSLAEDVVCFDETIDGDRLVFMPGNFIQVNAKVNQQMVKQALNW 291 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 L Q ED +LDLF G+GNFTLPLA + SV VEGV A+ + NA L NV Sbjct: 292 LAPQAEDEILDLFAGIGNFTLPLARRVKSVTAVEGVSAMTTQLAANAAAADLSNVHAQTF 351 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE----PIRIVYVSCNPATLARD 397 +L D + K GF +VLLDPARAGA V Q I +LE P++IVYVSC+P TLARD Sbjct: 352 DLSTDQVSR-LLKKGFQRVLLDPARAGAEKVCQGIAQLEADKQPVQIVYVSCSPDTLARD 410 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 S LL GY I ++++DMF T H+E+MV F +V Sbjct: 411 SRWLLDNGYEITHISLVDMFVQTHHIETMVSFKKV 445 >UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC40A Length = 486 Score = 283 bits (725), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 153/429 (35%), Positives = 239/429 (55%), Gaps = 17/429 (3%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 TV++ DLD G GV R N +F+ G L E ++ V KK+ A+ S S R+ Sbjct: 57 TVTIEDLDWMGNGVVRGN-PMVFVEGALVGETCDIEVVSSKKKVINARATNIHSPSDARQ 115 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV--IADVPWG-----YRRR 130 P CP F CGGCQ QH D + AL +M+ +S + P YRR+ Sbjct: 116 APFCPVFDACGGCQLQHIKPDAALEQRDRALKVMMERQLSMKPHVWQAPLAGPRPQYRRK 175 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 ARL+++ Q+++GFR+A SS++++ + CPIL L L+ +R L ++ RH+G Sbjct: 176 ARLAIDAR-NPNQIKLGFREANSSNVINAETCPILVDPLSKLIGPLRDALTGFESARHIG 234 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSHSE------GLDLYLAPDSEILETVS- 243 H+ L+ + + ++++HT L + + + ++ G++L L + +V Sbjct: 235 HISLIAGDNTSHLVIKHTKALEAELIDAVSELVNTSSSVGVCGIELKLENKQAQIRSVGR 294 Query: 244 -GEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 +M N ++ S DFIQ+N VN+KMV +A+ WL+ +P +RV D F G+GNFTL Sbjct: 295 GTDMVMNTVNSCSISPSANDFIQINKVVNEKMVNQAIGWLNPEPNERVADWFSGLGNFTL 354 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 P+A A V VEGV +V + + NA+ G++NV + H +L + + + GFDKVLL Sbjct: 355 PIAKLGAKVQAVEGVAEMVRRAKDNAQQQGIENVEWLHLDLADKTNVEASLQLGFDKVLL 414 Query: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 DP+R GA V ++K P IVYVSCNP+T +RD++ L+ GY + + + +MFP T H Sbjct: 415 DPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLIDGGYEMEKAGVAEMFPFTHH 474 Query: 423 LESMVLFSR 431 +E M LF+R Sbjct: 475 MEMMALFTR 483 >UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DVS0_EIKCO Length = 430 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 173/434 (39%), Positives = 234/434 (53%), Gaps = 31/434 (7%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 T +++ +D G+GVAR +GKT FI G LPQE +T KK + A+ R L+ SP R Sbjct: 3 TATIHSIDHEGRGVARIHGKTTFITGALPQETVAYQITRSKKHHDEAQATRILTPSPYRI 62 Query: 78 TPRCPHFGVCGGCQQQHASVDLQ----QRSKSAALARLMKHDVSEVIADV---PWGYRRR 130 P CPH+ CGGC QH ++Q QR L RL K ++ + WGYR R Sbjct: 63 APACPHYSQCGGCTLQHVHSNVQVAYKQRILEDQLQRLGKVRPQYLLPPIYGQAWGYRYR 122 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-L 189 ARLS ++ + +GF+ S IVD++QCPILAPQL L RA L L + + Sbjct: 123 ARLSAHH--SQGRTTLGFQSRSSHRIVDIRQCPILAPQLANQLSNTRALLQQLNRLHTPV 180 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY------------LAPDSE 237 +EL + + + L HT L A R L + + S + + L PDS Sbjct: 181 RTIELHHSPAANSLTL-HTEHLPKAARAHLIQHAQSLPANWHIWLQTPHRPAQPLLPDSP 239 Query: 238 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 L S +P Y L L + P DF QVN N +VARA++ L QP +R+ DLFCG+ Sbjct: 240 QL---SYSLPEY---ALTLPYRPGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGL 293 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG- 356 GNF+LP+A A V+G+EG P L E+ QNARLN L +H T+ A G Sbjct: 294 GNFSLPIAAAGAQVIGIEGSPELTERASQNARLNHLAERAQFHSADLFQTTEHTVAGWGY 353 Query: 357 FDKVLLDPARAGAAGVMQQI-IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 FDK+LLDP R+GA ++Q + P RIVYVSCNPAT ARD+ L+ GY +++ Sbjct: 354 FDKILLDPPRSGAYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVN 413 Query: 416 MFPHTGHLESMVLF 429 MFP T H+E++ F Sbjct: 414 MFPQTAHVETVGCF 427 >UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RXM8_ALTMD Length = 482 Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 157/427 (36%), Positives = 242/427 (56%), Gaps = 19/427 (4%) Query: 18 TVSVNDLDSFGQGVARHNGKTL-FIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 +++ +LD GQGVAR G T+ F+ G LP E ++ V KK+ AK + S R Sbjct: 59 AITIQELDWMGQGVAR--GATMYFVEGALPGETCDIEVVSSKKKVVSAKTISIQGPSELR 116 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWG---------Y 127 + P CP F CGGCQ QH D + AL +M+ +S I W Y Sbjct: 117 QPPFCPVFEACGGCQLQHIDADAALAYRDNALKIMMERQLS--IGSGVWQAPLVGPRPQY 174 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 RR+ARL+++ +++GFR+A S+ +V++ CPIL L + +R L + R Sbjct: 175 RRKARLAIDAR-NPDNIKLGFREANSNKVVNLDTCPILVNPLSTAIGPLRNALEGYDSAR 233 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE-- 245 H+GH+ L+ + ++++HT L A E ++ F+ + GLD+ L L +V GE Sbjct: 234 HIGHISLIAGDNRAQVVIKHTKALEDALIETVDAFAKALGLDVVLENKQGRLRSV-GEAQ 292 Query: 246 -MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 + + +G ++ S DFIQ+N VN+KM+ +AL WLD +P +R+ D F G+GNFTLP+ Sbjct: 293 GLIMHTVDGCSISPSANDFIQINKVVNEKMINQALVWLDPRPNERIADWFSGLGNFTLPI 352 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A + A V +EGV +V + + NA+ G++NV + H +L + + GFDKVLLDP Sbjct: 353 AKKGALVQAIEGVAEMVLRAKDNAQQQGIENVEWLHLDLANKANVEASLQQGFDKVLLDP 412 Query: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 +R GA V ++K P IVYVSCNP+T +RD++ L+ GY + + + +MFP T H+E Sbjct: 413 SREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLINGGYEMEKAGVAEMFPFTHHME 472 Query: 425 SMVLFSR 431 M LF++ Sbjct: 473 MMALFTQ 479 >UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Bermanella marisrubri RepID=Q1MXP1_9GAMM Length = 448 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 158/436 (36%), Positives = 249/436 (57%), Gaps = 20/436 (4%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 KR + ++ T+ V+DL + QGVAR + +FI G LP E E ++E ++++A AK+ Sbjct: 17 KRSSGPGELKTLVVHDLSNEAQGVARDDDGVVFIEGALPDEKVEALISEQRRRFALAKIK 76 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPW-- 125 R + S R P C H+ CGGCQ QH S Q K L + I PW Sbjct: 77 RIVEASANRVEPLCRHYQRCGGCQLQHLSSQHQIPYKQNNLQHEFASKLK--IDSAPWQT 134 Query: 126 -------GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 GYRRRAR+ + Y KT ++ +GFR+ +S + D+ +CP+L +L+ L+P +++ Sbjct: 135 PITGDAYGYRRRARIGIRYRHKTGEVIVGFREQQNSHLTDISECPVLVSELQNLIPSLKS 194 Query: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI 238 L +Q + + +L+ +++ LR L +D++ L ++ SE + L + D I Sbjct: 195 VLKKVQKVEVVTQAQLLAGDDLSVVSLRAIKSLPQSDKQILIEWAKSEAVQLDIQGDDAI 254 Query: 239 LETV---SGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 ET+ + + W++ G+R+ F+ FIQ N VN++MV AL+WL+V+ + VLDLF Sbjct: 255 -ETLFQPNDKTLWFNVAGMRIHFASNSFIQANGRVNEQMVQTALQWLNVKAHETVLDLFA 313 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE-DVTKQPWAK 354 G+GNFTLPLA A V VE +V Q NA+ N L NV NL+ D ++ A Sbjct: 314 GLGNFTLPLAQHAKRVCAVELDKKMVADLQHNAQRNELSNVDVQLGNLDNLDAVERLSAA 373 Query: 355 NGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 D ++LDP RAGAA +M + K + R++YV+C P++L RD+ L+++G+ + ++ +L Sbjct: 374 ---DVIVLDPPRAGAAVIMPWVAK-QKSRVLYVACEPSSLIRDAAVLVESGFKLDKVVVL 429 Query: 415 DMFPHTGHLESMVLFS 430 DMFP T H+E+M LFS Sbjct: 430 DMFPQTKHVETMALFS 445 >UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Proteobacteria RepID=RUMA_RALPJ Length = 450 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 167/446 (37%), Positives = 241/446 (54%), Gaps = 36/446 (8%) Query: 19 VSVNDLDSFGQGVARHN------GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + + LD +G+ R GK +F+ G LP E K Y +A VV L Sbjct: 7 LDIVSLDGEARGIGRLTNEDGTPGKVVFVEGALPGERVMYRSHRVKPSYEQAGVVNILRQ 66 Query: 73 SPERETPRCPHFGVCGGCQQQH----ASVDLQQR---SKSAALARLMKHDVSEVIADVPW 125 S R TP+C FGVCGGC QH A V ++QR LA+L V IA W Sbjct: 67 SASRVTPQCKFFGVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDW 126 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 GYR RARL++ ++ + +GF + SS + D+ C +L P + ALL +R +G L Sbjct: 127 GYRYRARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSI 186 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSE-------- 237 ++ + +EL T ++LR+ P+++ D +L F+ + +L P Sbjct: 187 VQRMPQIELAVGQDVTALVLRNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYP 246 Query: 238 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 + T++ +P + G+ + F P DF QVN +N+ +++RAL+ LD QP DR+LDLFCG+ Sbjct: 247 LDRTLTYTLPEF---GITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGI 303 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT-FYHENLEEDVTKQPWAKNG 356 GNFTLP+AT+A V+G+EG AL + NA+ NGL T F NL E A Sbjct: 304 GNFTLPMATRAREVMGIEGSEALTTRALANAQHNGLHTKTSFACRNLFEVSADDVAALGK 363 Query: 357 FDKVLLDPARAGAAGVMQQIIKLE----------PIRIVYVSCNPATLARDSEALL-KAG 405 FD+ L+DP R GA V + + +L P RI+YVSCNPATLARD+ L+ +AG Sbjct: 364 FDRWLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAG 423 Query: 406 YTIARLAMLDMFPHTGHLESMVLFSR 431 Y +A +++MFPHT H+ESM +F R Sbjct: 424 YRLAGAGVVNMFPHTSHVESMAVFER 449 >UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gammaproteobacteria RepID=A5CXB2_VESOH Length = 439 Score = 277 bits (709), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 154/441 (34%), Positives = 238/441 (53%), Gaps = 22/441 (4%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 +RR + +++ G+G+A K +F+ LP E T ++ A Sbjct: 3 RRRKLEHKTYKLNIESFSHEGRGIAHFEDKIIFVSDALPGELVIANRTFSCAKFEEADAK 62 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS-------EVI 120 L + R P+C FG+CGGC Q+ S + Q + KS L ++ + + Sbjct: 63 EILKPADNRMKPKCDVFGICGGCSFQNLSSEDQIQIKSRWLKKVFARQAKVEPETWLKSL 122 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 WGYRR+ARL + Y+ K ++ +GFR+ SS I ++ +C +L P + L + C+ Sbjct: 123 QFQSWGYRRKARLGIRYVAKKDKVLIGFRERKSSFITNMSRCEVLHPSIGEHLEVLANCI 182 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLER---------FSHSEGLDLY 231 L + E+V + SG +ILRH LS D + L ++ S GLD Sbjct: 183 ERLSIKSSIPQFEVVISESGIALILRHLESLSVKDEKILADCAQELNITFYTQSGGLDSV 242 Query: 232 LAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 D + T S + + + + F P DF+QVN +NQ+MV+ A+E L++ D+V+ Sbjct: 243 KPLDEPTILTYS-----HSNYNIIMEFLPTDFVQVNFKLNQQMVSLAVELLELNESDKVI 297 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DLFCG+GNFTLP+A A VVG+EG LVE+ + NA N + NV FY +L ++V Sbjct: 298 DLFCGLGNFTLPIARYAKYVVGIEGDLGLVERAKYNAEKNSINNVDFYRSDLCKEVVGFE 357 Query: 352 WAK-NGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIAR 410 W K ++K L+DP+R+GA +++ + KL R+VYVSCNPATLARD+ L+K G+T+ Sbjct: 358 WFKGKTYNKALIDPSRSGAIEIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLET 417 Query: 411 LAMLDMFPHTGHLESMVLFSR 431 ++DMFP T H+ES+ LF + Sbjct: 418 AGVIDMFPQTSHVESIALFVK 438 >UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18 Tax=Proteobacteria RepID=RUMA_ACIAC Length = 491 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 178/461 (38%), Positives = 242/461 (52%), Gaps = 47/461 (10%) Query: 19 VSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + V +D QGVAR +GK +FI G LP E + K + +A + +SP+R Sbjct: 31 LEVTSMDMDAQGVARRPDGKVVFIDGALPFEWVSASTHRKKNNWEQASLTAIHRESPQRV 90 Query: 78 TPRCPHFGV----CGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADV---PWG 126 P CPHFG+ CGGC+ QH A V ++QR L L K V+ + WG Sbjct: 91 RPGCPHFGLHAGACGGCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWG 150 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR RARL++ ++ K ++ +GF + S I D++ CP+L P + A+L +RA + S+ A Sbjct: 151 YRYRARLAVRHVEKKGKVLVGFHERKSRYIADMEVCPVLPPHVSAMLLPLRALIASMDAR 210 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL---APDSEILETVS 243 +EL T ++LRH PLS AD +L F+ + G+ +L PD+ L Sbjct: 211 DTCPQIELACGDDVTALVLRHLEPLSEADLGRLRSFAAAHGVQWWLQPKGPDTVHLLDEG 270 Query: 244 GEMPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 G Y G+ + F P DF QVN +N+ +V RAL LD DRV+D FCG+GNFT Sbjct: 271 GPQLNYALPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLDAGRTDRVIDWFCGLGNFT 330 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLN--------GLQNVTFYHENLEEDVTKQPWA 353 LP+ATQA VVG+EG ALV + ++N R N L TF NL E + A Sbjct: 331 LPIATQAREVVGIEGSEALVARSRENYRKNQDDRPQGQALAPATFVARNLFEMTPEMLIA 390 Query: 354 KNGFDKVLLDPARAGA-------AGVMQQIIKLE--------------PIRIVYVSCNPA 392 DK L+DP R GA A + Q I E P RIVYVSCNPA Sbjct: 391 DGVADKWLVDPPREGAFALAKALADIHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPA 450 Query: 393 TLARDSEALL-KAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 TLARD+ L+ +AGY +++MFPHT H+ESM +F RV Sbjct: 451 TLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFERV 491 >UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BS02_9GAMM Length = 450 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 157/439 (35%), Positives = 239/439 (54%), Gaps = 15/439 (3%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 +RR +Q + V+ L G+G+A GK F+ G L E + T+ +Q+ K++ Sbjct: 5 RRRRLPQQPLEAEVSALSHEGRGIAHVEGKITFVRGALAGERVRLRYTKRHRQWDEGKLL 64 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH----DVSEVIADV 123 L +PER P C HFGVCGGC QH + Q K + ++H + S +A + Sbjct: 65 EVLRPAPERVEPGCIHFGVCGGCALQHLTPQQQLTFKETVVREKLRHMGGVEPSTWLAPL 124 Query: 124 ---PWGYRRRARLSLNYLP-KTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 WGYRR+ARL++ Y+ K ++ +GFR+ S+ + D+ C +L P++ A +P++ Sbjct: 125 GSPAWGYRRKARLAVKYVAGKDDRVLVGFRETHSTLVADLASCRVLDPRIGAHIPQLAET 184 Query: 180 LGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP-DSEI 238 + L + +E+ ++ R+ AP + D L F+ +Y P D Sbjct: 185 IRCLSIFDRVPQIEVAAGDQAVGLVFRNLAPFTVEDYRLLSAFARQYDFYVYEQPGDKAS 244 Query: 239 LETVSGEMPWYD----SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 + + P + + + F P DF QVN VN +V RA+ L +QP+DRVLDL+ Sbjct: 245 VRPIWPRAPQLSYALPDHAVSVFFEPTDFTQVNPAVNHALVERAIALLALQPQDRVLDLY 304 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-QPWA 353 CG+GNF +A Q ASVVG+EG ALVE+ ++NA N + NV F +L + + Sbjct: 305 CGLGNFAFCIARQVASVVGLEGDDALVERARENAARNAITNVVFQRADLSRGIAELAHLQ 364 Query: 354 KNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYTIARLA 412 ++G +VLLDP R+GAA V+ I L RIVYVSC P+TLARD+ L+ + GY +A Sbjct: 365 RDGVSRVLLDPPRSGAAEVLADIAALRAERIVYVSCGPSTLARDAGRLVHEYGYRLAAAG 424 Query: 413 MLDMFPHTGHLESMVLFSR 431 ++DMFPHT H+E + LF R Sbjct: 425 VMDMFPHTAHVECITLFVR 443 >UniRef50_B6BUM1 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Betaproteobacteria RepID=B6BUM1_9PROT Length = 437 Score = 267 bits (683), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 160/429 (37%), Positives = 231/429 (53%), Gaps = 25/429 (5%) Query: 23 DLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCP 82 D+D G+GVA+ KT FI L E E + + KK + SP R P CP Sbjct: 10 DIDHEGRGVAKKEEKTFFIHNALIDEKVEYKILKKKKNIFFGIATHIENPSPVRADPSCP 69 Query: 83 HFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWG--------YRRRARLS 134 H+ VCGGC QH Q K+ A + +KH V +V+ + YR +ARL Sbjct: 70 HYNVCGGCSMQHFKHSSQIEFKNNAFFQTLKH-VGKVVPESQIEPIFLEFSEYRHKARLR 128 Query: 135 LNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVEL 194 Y+ K ++ +GF + + + D+ C +L ++ + L ++++ + +L + +E Sbjct: 129 AKYVDKKDKVLVGFNERLTHFLTDMDSCEVLPGRISSCLGEIKSLIKNLSIYNRMPQIEY 188 Query: 195 VQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSN-- 252 + I R PLS D +KL FS++ ++++ S+ ETV P DS Sbjct: 189 ASNGDRDIFIFRILDPLSIEDIKKLSEFSNARNIEIWTQ--SKGPETVKPLFPERDSEII 246 Query: 253 -------GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 L L F+P FIQ+N +NQ M+ +ALE L++ P+D V+D F G+GNFTLP+A Sbjct: 247 SYPIAKYELNLEFNPSGFIQINPYINQLMIDKALELLNLNPQDEVVDFFSGLGNFTLPIA 306 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL-EEDVTKQPWAKNGFDKVLLDP 364 A SV+G+EG LV GQ+NA LN L NV+F + NL E DV KN +K LLDP Sbjct: 307 KYAHSVIGIEGSEDLVNLGQKNAGLNNLNNVSFQYSNLFEVDVDFVNSLKNK-NKWLLDP 365 Query: 365 ARAGAAGVMQQIIK--LEPIRIVYVSCNPATLARDSEALLK-AGYTIARLAMLDMFPHTG 421 R GA +++ I K + P IVYVSCNPATLARD+ L+ GY +L+MFPHT Sbjct: 366 PRDGAMQLLELISKDTMLPETIVYVSCNPATLARDANILVNDKGYKYQSAGILNMFPHTS 425 Query: 422 HLESMVLFS 430 H+ES+ LF+ Sbjct: 426 HIESISLFT 434 >UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W3B9_NEICI Length = 461 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 158/440 (35%), Positives = 246/440 (55%), Gaps = 33/440 (7%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 ++ ++ LD G+GVA+ GKT+FI G LP E +T+ KKQ+ A+ V S Sbjct: 15 EVNVAEISALDYEGRGVAKVGGKTVFIKGALPSERVGFQITKQKKQFDEAETVAIFKVSD 74 Query: 75 ERETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADV---PWGY 127 ER P+C +F CGGC QH A V +QR L R+ K +++ + W Y Sbjct: 75 ERTVPQCRYFERCGGCSLQHISPTAQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHY 134 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R RAR S++ L K+ +L++GF+ ++D+V + C ++ + LP +R L L Sbjct: 135 RDRARFSVS-LDKSCRLKLGFQAKKTNDVVGISSCMLIPKPVSDKLPAIRELLQDLAEGG 193 Query: 188 HLGHV-ELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEM 246 + E + + T++ + + L D ++ ++ SE L+ D +I + G++ Sbjct: 194 SIARFAEFYRGSEITVLNIAFKSKLRQNDESRIRQWFDSE-----LSDDWQIWLQIEGKV 248 Query: 247 --PWYDSN-----------GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 P+Y G+ + F P DF Q+N N+ MV+RA++ LD++ +RV DL Sbjct: 249 SEPFYPQKDTILKYTLPEFGIEMPFRPGDFTQINTDTNRLMVSRAIKMLDIRQGERVADL 308 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT-FYHENLEE--DVTKQ 350 FCG+GNF+LP+A ASVVGVEG LV + +QNARLNG T F NL + + T Sbjct: 309 FCGLGNFSLPIAKSGASVVGVEGAENLVGRARQNARLNGCGGQTDFIAANLFDCTENTVA 368 Query: 351 PWAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 W K FDK+L+DP R+GA V++ + P +IVYVSCNP+TLARD+ L++ GY + Sbjct: 369 SWGK--FDKMLIDPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYILG 426 Query: 410 RLAMLDMFPHTGHLESMVLF 429 ++ +++MF HT H+ES+ +F Sbjct: 427 QVGIMNMFAHTSHVESIAVF 446 >UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Pseudomonadaceae RepID=B3PL62_CELJU Length = 485 Score = 263 bits (673), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 163/428 (38%), Positives = 232/428 (54%), Gaps = 23/428 (5%) Query: 24 LDSF---GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 +D F G+G+A +GKTLF+ G + E + ED ++A A+V + SP+R P Sbjct: 55 IDRFSHDGRGLASLDGKTLFVDGAIAGETVTARLLEDHPRFAEARVEDVILASPDRVEPP 114 Query: 81 CPHFGVCGGCQQQHASVDLQQRSKSAALAR-------LMKHDVSEVIADVPWGYRRRARL 133 C H+ CGGCQ QH + Q K + L V + GYR RARL Sbjct: 115 CAHYATCGGCQLQHLKPEAQLLMKQQVVLEQVHRWGGLTPKRVLPPLRSESLGYRSRARL 174 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 + Y + + +GFR+ + +++ C +L P L L+ +R L + A + + H+E Sbjct: 175 GVWYEADSS-VTLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQWLQARVANKAVTHIE 233 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD-SEILETVSGE----MPW 248 LV A SG +I+RHT PL + R+ L + E ++L P+ ++ L + G Sbjct: 234 LVAAQSGPAVIVRHTKPLVALQRQALAELAQRESCQVWLEPNGNQGLTDLEGSPVDPHLV 293 Query: 249 YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA 308 D GL L F P+DF QVN VN +MV +ALE L D VLD FCGMGNFTLP+A++ Sbjct: 294 LDVAGLPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLVLDFFCGMGNFTLPMASRV 353 Query: 309 ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE-DVTKQPWAKNGFDKVLLDPARA 367 A V+G+E V +V + Q NA GL N+ F +L + D + + +LLDP R Sbjct: 354 ARVIGLEVVEPMVTRAQANATRLGLDNLEFLKADLSQMDSPRLRQLCSQASAILLDPPRD 413 Query: 368 GAAGVMQQII------KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 GA ++ Q+ +L RIVYVSCNPATLARD+ L +AGY + L ++DMFPHT Sbjct: 414 GAKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAEAGYGLDALGVMDMFPHTS 473 Query: 422 HLESMVLF 429 H+ESM LF Sbjct: 474 HVESMALF 481 >UniRef50_Q1QX18 RNA methyltransferase, TrmA family n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX18_CHRSD Length = 475 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/428 (39%), Positives = 231/428 (53%), Gaps = 21/428 (4%) Query: 19 VSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 +S+ L G+GVAR +GKT+F+ LP E V V +K++ A VV RL+ SPER Sbjct: 35 LSIERLAHDGRGVARDPHGKTVFVDQALPGERVRVAVHRQRKRFDEAHVVERLATSPERA 94 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD-----VSEVIADVPWGYRRRAR 132 TP C ++G CGGC QH ++ Q+ K L L EV+A YRRRAR Sbjct: 95 TPPCAYYGRCGGCDLQHLDLEAQREHKRRTLDELFTRQGLTLPEIEVLAGEGLAYRRRAR 154 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHV 192 L + + +GFR GS ++D+ C +L P L L+ +RACL L+A R +GH+ Sbjct: 155 LGVKCDAEGTP-HLGFRARGSEHLIDIDSCVVLEPVLSRLIAPLRACLVQLEAPRRVGHI 213 Query: 193 ELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL-----APDSEILETVSGEMP 247 EL+ G +++R + D + RF+ + L AP L GE Sbjct: 214 ELIATAEGACVVVRQLREVPG-DEARWRRFAAEHDVTLAWRVGREAPTLRWLHAPRGEAL 272 Query: 248 W----YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 D L L P DF+Q+NA VN ++V AL WL + E+RVLDLF G+GNFTL Sbjct: 273 HVTLVLDDTTLSLGCVPGDFLQINADVNARLVRTALAWLAPRGEERVLDLFAGVGNFTLA 332 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA + AS+ G+EG PA+VE+ NAR GL V +L V + D V++D Sbjct: 333 LAPRVASITGIEGSPAMVERLADNARRAGLHQVGAQQSDLATQVPE----VAAVDWVIMD 388 Query: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 P R GA + + + ++YVSC+PA LARD+ L++ GY I R A+ DMFPHT HL Sbjct: 389 PPRGGAEALCRALADSPVTTLLYVSCDPAALARDAARLVQGGYRIQRAALADMFPHTAHL 448 Query: 424 ESMVLFSR 431 ESM+L +R Sbjct: 449 ESMLLLTR 456 >UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHC6_9NEIS Length = 437 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 156/433 (36%), Positives = 226/433 (52%), Gaps = 22/433 (5%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 + LD +GVA+ NGKT+F+ LPQE A++ +T+DK +A A+V + + SP R P Sbjct: 6 ITSLDYESRGVAKLNGKTIFVNNALPQEIAQIRITQDKAHFAEAQVEQIVQPSPYRRAPA 65 Query: 81 CPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADV---PWGYRRRARL 133 CPH+G CGGC QH A V ++QR L R+ K ++ V PW YR R RL Sbjct: 66 CPHYGDCGGCTMQHVEFTAQVAMKQRVFEEQLQRIGKVQPESLLPPVYGTPWHYRSRTRL 125 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 ++ + ++ +G++ S IV + QC +L + L + L + ++ + Sbjct: 126 AV-HTSANGKVVLGYQAKRSHKIVGINQCLLLPEHVSGCLGIIHDALQDMVNVQPKVGIR 184 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSN- 252 V+ + G + + L S ++ + + P S Sbjct: 185 SVEISVGEGVTAVNIVSQKRQPENVLCALSGCLNRGAGGKTVWQVWQQIGNAKPQAVSPH 244 Query: 253 ------------GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 GL + F DF Q+N +N+ MVARA+ +LD QP +R+ DLFCG+GNF Sbjct: 245 DAPPLVFRLPEFGLTMPFQLGDFTQINLPLNEIMVARAVRYLDPQPHERIADLFCGLGNF 304 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 TLPLA +AA VVG+EG AL ++ NAR NGL N F +L + A FDK+ Sbjct: 305 TLPLAKRAAEVVGIEGSAALTQRAVANARANGLPNAQFASADLFAATPETLAALGRFDKM 364 Query: 361 LLDPARAGAAGVMQQI-IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 LLDP RAGA V+Q + P RIVY+SCNPATLARD+ L GY A M+++FP Sbjct: 365 LLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLARDAAVLASKGYRFATAGMMNLFPQ 424 Query: 420 TGHLESMVLFSRV 432 T H+E++ +F RV Sbjct: 425 TSHVEAIGVFERV 437 >UniRef50_A1VQF1 23S rRNA (uracil-5-)-methyltransferase rumA n=8 Tax=Burkholderiales RepID=RUMA_POLNA Length = 490 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 171/474 (36%), Positives = 245/474 (51%), Gaps = 62/474 (13%) Query: 16 IITVSVNDLDSFGQGVA-RHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 I ++V LD QG+A R +GK +FI G LP E V K + +A + +S Sbjct: 22 IDLLTVESLDIEAQGIAHRADGKVVFIEGALPFEQVTANVYRKKSSFEKATLTAIYRESS 81 Query: 75 ERETPRCPHFGV----CGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADV--- 123 +R TP CPHFG+ CGGC+ QH A V ++QR L + K ++ + Sbjct: 82 QRVTPACPHFGMHTGACGGCKMQHLHIGAQVAVKQRVLEDNLRFIGKVKADNLLRPIEGP 141 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 W YR RARLS+ Y+ K +GF + S+ + D+ +C ++ + +L +R + S+ Sbjct: 142 AWHYRYRARLSVRYVRKKGTALVGFHERKSAYVADMTECHVVPQHVSDMLVPLRGLISSM 201 Query: 184 QAMRHLGHVELVQATSGTLMILRHTAPLSSADREK----------LERFSHSEGLDLYLA 233 A + +EL T M+LRH PLS AD + L+ + S GLD Sbjct: 202 DARETIPQIELACGDDLTAMVLRHMEPLSVADLARLRAFAAANAGLQWWVQSGGLDTVKL 261 Query: 234 PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 D+++ E G +P + G+ + F P DF QVN +NQ +V+RAL L VQP +RV+D Sbjct: 262 LDAQVAELSYG-LPEF---GITMPFKPTDFTQVNPHINQVLVSRALRLLGVQPTERVIDW 317 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN--------GLQNVTFYHENLEE 345 FCG+GNFTLPLAT+A V+G+EG LV + ++N N L+ F NL E Sbjct: 318 FCGLGNFTLPLATRAREVLGIEGSEVLVARSRENYERNKASSHVRPALEATKFVARNLFE 377 Query: 346 DVTKQPWAKNG-FDKVLLDPARAGAA---------------------GVMQQIIKL---- 379 +T K+G +K L+DP R GA G+ QQ + L Sbjct: 378 -MTPAMLVKDGAAEKWLVDPPREGAFELFKSLAALHQQVVTGVPCDDGIHQQSLALGGWT 436 Query: 380 EPIRIVYVSCNPATLARDSEALLK-AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 P RIVYVSCNPATLARD+ L++ GY +++MFPHT H+ESM +F R+ Sbjct: 437 PPSRIVYVSCNPATLARDAGVLVEGGGYRCTAAGVVNMFPHTAHVESMAVFERL 490 >UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12 Tax=Burkholderia cepacia complex RepID=RUMA_BURCM Length = 465 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 162/445 (36%), Positives = 230/445 (51%), Gaps = 37/445 (8%) Query: 19 VSVNDLDSFGQGVARH------NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + + LD +GV R GK +F+ G LP E + K Y +A VV L Sbjct: 25 LEIESLDMEARGVGRTVTEDGTPGKVIFVEGALPGERVTYSSYRRKPSYEQATVVDILRP 84 Query: 73 SPERETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADV---PW 125 S R P+C FG CGGC QH A V ++QR L L K V A + W Sbjct: 85 SVLRTQPKCAFFGTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETVFAPIHGPSW 144 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 GYR RARL++ + K + +GF + SS + D+ C +L P + A+L +R + L Sbjct: 145 GYRYRARLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSI 204 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 + +EL + T ++LR P+++ D L F+ + +L P +TV+ Sbjct: 205 RDRMPQIELAVGSQVTALVLRVLEPINADDEALLRAFADEHKVQFWLQPKGP--DTVT-- 260 Query: 246 MPWYDSN----------GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 P+Y + G+R+ F P DF QVN +N+ +V RAL L +DRVLDLFC Sbjct: 261 -PFYPLDVPLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFC 319 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAK 354 G+GNFTLPLA + V+G+EG L + NAR NG+ + TF NL E A Sbjct: 320 GIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRAL 379 Query: 355 NGFDKVLLDPARAGAAGVMQQIIKLE-------PIRIVYVSCNPATLARDSEALL-KAGY 406 FDK L+DP R GA V + + ++ P RIVYVSCNP+TLARD+ L+ +AGY Sbjct: 380 GAFDKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGY 439 Query: 407 TIARLAMLDMFPHTGHLESMVLFSR 431 + +++MFP+T H+ES+ LF R Sbjct: 440 RLKGAGVVNMFPNTSHVESIALFER 464 >UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSQ3_9GAMM Length = 452 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 162/455 (35%), Positives = 242/455 (53%), Gaps = 27/455 (5%) Query: 1 MAQFYSAKRRTTTRQI-----ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVT 55 M + +R+ +RQ + + + L G+G+A+ GKT F+ G LP E +T Sbjct: 1 MRRHPKKHQRSPSRQSPPPVELELDIERLSFEGRGIAQSQGKTCFVEGALPNERVRAKLT 60 Query: 56 EDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL------- 108 E ++++ + + SP+R TP CPH+ CGGC QH S Q K +L Sbjct: 61 EQRRRFNAGYTLDVIKASPQRVTPPCPHYQQCGGCDLQHLSPQAQTEHKRQSLLDTLARQ 120 Query: 109 ARLMKHDV--SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 A + H S V+ GYR RARL+ + + QQ +GFR+AGS I + QCPIL Sbjct: 121 ANIRPHRCLDSAVLNRDGLGYRSRARLACWFDSRRQQYHLGFRRAGSHTIEPISQCPILV 180 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVE--LVQATSG---TLMILRHTAPLSSADREKLER 221 + L+P +R L + + LGH++ L ++ SG L + + APL + L Sbjct: 181 EPINRLIPHLRDALPQWRLKKRLGHIDAFLNESPSGPQVALCLRLNQAPLDDSKAVMLN- 239 Query: 222 FSHSEGLDLYLAPDSEILETVSGE--MPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARA 278 F+ + L D + ET+ G+ + +Y +G L+L+ +F Q N G+N++MV A Sbjct: 240 FAQQHNITLAWRDDHRV-ETLHGDSDLTYYLLDGELKLSLGWGEFSQANRGLNREMVRTA 298 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 +E L V P VLD FCG+GNF+L LA A V+G+EG +VEK + NAR NG + F Sbjct: 299 VEQLHVPPGAHVLDAFCGVGNFSLALANGGAKVLGLEGSDNMVEKARHNARDNGFELCEF 358 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEP--IRIVYVSCNPATLAR 396 NL +G LLDP R GA+ + Q++ + EP R++Y+SCNPAT +R Sbjct: 359 KTMNLMHSDGIGRHTLDGIHHALLDPPRDGASELCQRLAR-EPELQRVLYISCNPATFSR 417 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 D+E L+ G+T+ + + D+FPHT H E M LF R Sbjct: 418 DAEHLVNGGFTLDTVQLWDLFPHTHHSEVMGLFVR 452 >UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J1B5_COMTE Length = 519 Score = 254 bits (649), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 162/471 (34%), Positives = 237/471 (50%), Gaps = 58/471 (12%) Query: 19 VSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + V +D QGVAR +GK +FI G L E K + A + +S +R Sbjct: 48 LEVLSMDMDAQGVARKPDGKVVFIDGALTGEIVSANTHRKKNNWEAATLTEIHRESSQRV 107 Query: 78 TPRCPHFGV----CGGCQQQH----ASVDLQQR---SKSAALARLMKHDVSEVIADVPWG 126 TP CP+FG+ CGGC+ QH A V ++QR LA++ + I WG Sbjct: 108 TPGCPNFGLHAGACGGCKMQHLHVAAQVAIKQRVLEDNLWHLAKVKPETLLRPIEGPAWG 167 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR R+RLS+ Y+ K ++ +GF + S I D++ C IL P ++A+L +RA + S+ A Sbjct: 168 YRFRSRLSVRYVAKKGKVLVGFHERKSRYIADMEVCKILPPHVDAMLMPMRALIASMDAR 227 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL---APDSEILETVS 243 +E+ T ++LRH PLS AD+++L F+ + + +L PD+ L Sbjct: 228 ETCPQIEVACGDHVTALVLRHLEPLSDADKQRLRDFAAEQNVQWWLQPKGPDTVHLMEEG 287 Query: 244 GEMPWYD--SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 G Y G+ + F P DF QVN +N+ +V R+L LD + ++RV+D FCG+GNFT Sbjct: 288 GTQLSYGLPDFGITMPFKPTDFTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFT 347 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNG--------LQNVTFYHENLEEDVTKQPWA 353 LP+AT A V+G+EG LV++ +N N L + +F NL E A Sbjct: 348 LPIATMAREVLGIEGSETLVKRSHENYAANNVTRSEDDKLASTSFVARNLFEMTPAMLIA 407 Query: 354 KNGFDKVLLDPARAGAAGVMQQIIKLE--------------------------------P 381 DK L+DP R GA + + + + P Sbjct: 408 DGNSDKWLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFP 467 Query: 382 IRIVYVSCNPATLARDSEALL-KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 RIVYVSCNPATLARD+ L+ +AGY +++MFPHT H+ESM +F R Sbjct: 468 KRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 518 >UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Variovorax paradoxus S110 RepID=C5CUM3_VARPS Length = 482 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 170/461 (36%), Positives = 245/461 (53%), Gaps = 54/461 (11%) Query: 19 VSVNDLDSFGQGVARHN--GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V LD QGVA HN G +FI G LP E + V K + + V +S +R Sbjct: 23 LKVESLDLDAQGVA-HNAEGMVVFIEGALPFEEVQFNVHRRKNNWEQGTVTAIRRESSQR 81 Query: 77 ETPRCPHFGV----CGGCQQQH----ASVDLQQRSKSAALARLMK---HDVSEVIADVPW 125 P CPHFG+ CGGC+ QH A V ++QR+ L L K +V + W Sbjct: 82 VRPGCPHFGLHTGACGGCKMQHLDEAAQVAVKQRALEDNLWHLGKVRPDNVLRPLEGPAW 141 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR RARLS+ ++ K + +GF + S + D++ CP+L Q+ +L +RA +GSL A Sbjct: 142 HYRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQVSDMLMPLRALIGSLDA 201 Query: 186 MRHLGHVELV------QATSGTL-MILRHTAPLSSADREKLERFS-HSEGLDLYL---AP 234 +EL + GT+ ++LRH PLS+AD +L+ F+ + G+ +L P Sbjct: 202 RETCPQIELACGDAPGTTSLGTIALVLRHLEPLSNADIGRLKAFAAQNAGVQWWLQAKGP 261 Query: 235 DS-EILET----VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 D+ ++LE +S E+P + G+ + F P DF QVN +N+ +V +AL LDVQ ++R Sbjct: 262 DTVKLLEEGGMPLSYELPQF---GVTMPFKPTDFTQVNPHINRALVGKALRLLDVQADER 318 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN--------GLQNVTFYHE 341 V+D FCG+GNFTLPLA++A V+G+EG LV + N N L F Sbjct: 319 VIDWFCGLGNFTLPLASRAREVLGIEGSDTLVARASDNFSKNQPATSARRALSATRFVAR 378 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE------------PIRIVYVSC 389 NL E A DK L+DP R GA + + + L P RIVYVSC Sbjct: 379 NLFEMTPAMLVADGSADKWLVDPPREGAFALAKAMADLHLQPELRTDGWTPPKRIVYVSC 438 Query: 390 NPATLARDSEALL-KAGYTIARLAMLDMFPHTGHLESMVLF 429 NP+TLARD+ L+ +AGY +++MFPHT H+ES+ +F Sbjct: 439 NPSTLARDAGLLVHQAGYRCTFAGVINMFPHTAHVESIAVF 479 >UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU44_9GAMM Length = 440 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 162/433 (37%), Positives = 237/433 (54%), Gaps = 27/433 (6%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 V + LD G GVAR +GK LF+ G LP E V E +Y RA+VV S +R T Sbjct: 15 VHITGLDGEGTGVARVDGKVLFVAGALPGECVRVRRYEGTPRYDRARVVEVERASSQRVT 74 Query: 79 PRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADV---PWGYRRRA 131 P C H GVCGGC QH A + ++QR L + + + ++ + YR +A Sbjct: 75 PPCAHAGVCGGCSLQHLEPGAQIAVKQRHLEDQLQHIGRVRPARILPPIQGPSLHYRSKA 134 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGH 191 RLS+ +PKT+ +GFR+ SS + ++ CP+L P++ + +RA + LQ + Sbjct: 135 RLSVR-VPKTRGALVGFREYHSSFVAAMESCPVLDPRVGERILDLRALVARLQRPAAIPQ 193 Query: 192 VELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL-APDSEILETVSGE----- 245 E+ + ++ILRH LS +D L+ F+ + GL + L E L+ + GE Sbjct: 194 WEIACTDAHAVLILRHLDALSRSDLRLLQGFADAHGLRILLQGGGPESLQALPGEDVPEL 253 Query: 246 ---MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 +P +D LRL F P FIQVN +N +V RA+ L +P + ++DLFCG+GNFTL Sbjct: 254 EYALPEFD---LRLRFQPLGFIQVNPWINPVLVRRAMALLAPEPGEEIVDLFCGLGNFTL 310 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVL 361 P+A A +GVEG LV + + NA LNGL F +L + G K+L Sbjct: 311 PMARLGARALGVEGDTRLVAQARFNAELNGLAARAHFIAADLTQTALADLPGAAGVRKML 370 Query: 362 LDPARAGAAGVMQQIIKLEPI--RIVYVSCNPATLARDSEALL-KAGYTIARLAMLDMFP 418 +DP R+GA +++ I P R+VYVSCNP TLARDS L+ + G+ + +++MFP Sbjct: 371 IDPPRSGAIEILKGI---GPALRRLVYVSCNPDTLARDSAYLVQQQGFRLEAAGIVNMFP 427 Query: 419 HTGHLESMVLFSR 431 HT H+ES+ LF+R Sbjct: 428 HTAHVESVALFTR 440 >UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Neisseria RepID=D0WBI8_NEILA Length = 443 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 152/434 (35%), Positives = 239/434 (55%), Gaps = 33/434 (7%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 ++ LD G+GV + GKT+FI G LP E +T+ KKQ+ A+ V S ER P+ Sbjct: 10 ISALDYEGRGVTKVGGKTVFIKGALPSERVGFQITKQKKQFDEAEAVAIFKVSDERTVPQ 69 Query: 81 CPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADVPWGY----RRRAR 132 C +F CGGC QH A V +QR L R+ K +++ + +GY R RAR Sbjct: 70 CRYFERCGGCSLQHISPAAQVAFKQRMMEEQLERIGKVRPQQILPPI-YGYARHYRDRAR 128 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHV 192 S++ L K +L++GF+ ++D+VD+ C +L + LP +R G LQ + G V Sbjct: 129 FSVS-LDKLCRLKLGFQAKKTNDVVDISSCMLLPKPVSDKLPAIR---GLLQDLAEEGSV 184 Query: 193 ----ELVQATSGTLMILRHTAPLSSADREKLERFSHSE---GLDLYLAPDSEILE----- 240 E + + T++ + + L + ++ ++ SE G ++L + + + Sbjct: 185 ARFAEFYRGSEITVLNIAFKSKLRQNEENRIRQWFDSELSDGWQVWLQIEGGVSQPFYPK 244 Query: 241 ---TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 T+ +P + G+ + F P DF Q+N N+ MV+RA++ LD++ +R+ DLFCG+ Sbjct: 245 TDKTLKYTLPEF---GIEMPFRPGDFTQINTDTNRLMVSRAVKMLDIRQGERIADLFCGL 301 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT-FYHENLEEDVTKQPWAKNG 356 GNF+LP+ A VVG+EG LV + QNARLNG T F NL + K + Sbjct: 302 GNFSLPMVKSGADVVGIEGAENLVRRAWQNARLNGCDGQTDFIAANLFDCTEKTVASWGR 361 Query: 357 FDKVLLDPARAGAAGVMQQI-IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 FDK+L+DP R+GA V++ + P +IVYVSCNP+TLARD+ L++ GY ++ +++ Sbjct: 362 FDKMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSGAGIMN 421 Query: 416 MFPHTGHLESMVLF 429 MF T H ES+ +F Sbjct: 422 MFAQTSHTESVAVF 435 >UniRef50_C8NCJ6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCJ6_9GAMM Length = 430 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 160/437 (36%), Positives = 230/437 (52%), Gaps = 29/437 (6%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + +T++++ D +GVARH+GKT+F+ G LP E +T DKK++ V+ L SP Sbjct: 2 KTLTLTIDGFDYNARGVARHDGKTVFVSGALPGERVVARITADKKRFLETDAVQILEPSP 61 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMK---HDVSEVIADVPWGY 127 R TP C ++ CGGC QHA Q R K LAR+ K V I+ PW Y Sbjct: 62 ARITPACAYYDDCGGCALQHADDAAQHRLKETVWLEQLARIGKIAPETVLPAISGEPWHY 121 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R RARL+ + Q +GFR SS +V++++C L + A LP +RA L Sbjct: 122 RSRARLAWD----DAQQALGFRGRASSRVVNLERCLTLPAAISARLPDIRALCARLAQQT 177 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADR---EKLERFSHSEG--LDLYLAPDSEILE-- 240 L V++ + S T++ +R + DR E + R++ S ++L E + Sbjct: 178 TLHGVDISEGDSVTVLRIRLQKAVG--DRLAAETVARWNESAAQPWQIWLQNGRETRKHP 235 Query: 241 ----TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 ++ +P YD L + ++P DF QVN +N+++V +AL L V P RVLD FCG Sbjct: 236 ADAPALAYTLPAYD---LTMPYAPDDFTQVNKALNRELVTQALAALQVPPGARVLDFFCG 292 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKG-QQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 +GNFTLPLA A V+G+EGV +V + A F +L KQ A Sbjct: 293 LGNFTLPLARSGADVLGLEGVEEMVVRATANAAAHGLAARCQFRRADLFTVTAKQLKAWG 352 Query: 356 GFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 ++ LLDP RAGA + + + K P RIVYVSCNP TLARD+ L + GY +A +L Sbjct: 353 KAERWLLDPPRAGAQALCEALDGKHAPARIVYVSCNPGTLARDAGILAQKGYRMASGRLL 412 Query: 415 DMFPHTGHLESMVLFSR 431 MF T H+ES+ +F R Sbjct: 413 HMFAQTAHVESLAVFVR 429 >UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEE5_9DELT Length = 466 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 169/456 (37%), Positives = 245/456 (53%), Gaps = 48/456 (10%) Query: 18 TVSVNDLDSFGQGV--ARHNGK--TLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 T + LD G+GV A +G+ F+ LP E + + A V+ L S Sbjct: 16 TAVIETLDRKGRGVVPAGEDGRPRQAFVHATLPGERVHFQRRDREGPSDVAGVLEVLESS 75 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-HDVS-----EVIADVPWGY 127 P R PRC H+GVCGGC H D Q K LA + H ++ E + PW Y Sbjct: 76 PLRVEPRCAHYGVCGGCSLMHLDPDEQVALKQRWLASDFEGHGLAPERWLEPLRAEPWAY 135 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLE-ALLPKVRACLGSLQAM 186 RRRARL ++ ++ +GFR+ I +++ C +LA + AL+PK+ + L Sbjct: 136 RRRARLGAKWVAGKDKVVVGFREQDKRFIANLEGCEVLAGRHGGALIPKLSELIAGLSLA 195 Query: 187 RHLGHVELVQA--TSG--TLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETV 242 + VE+ A T G T ++ R P + DRE+L F+ +EGL ++L S+ L+TV Sbjct: 196 TKIPQVEVSVADDTDGAVTALVFRVLEPPTDEDRERLRAFAAAEGLRVFL--QSKGLDTV 253 Query: 243 S----------GE-----------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEW 281 + GE +P ++ L L F P DF+QVNA +N+ M+ARA+E Sbjct: 254 ALFADERGQTEGEGFEDARELSYALPEFE---LDLRFRPTDFVQVNAAINRSMIARAVEL 310 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 L ++PE RVLDLFCG+GNF+L LA +A +V GVEG LV + NA NGL N F Sbjct: 311 LALEPEHRVLDLFCGLGNFSLALARRAGAVFGVEGDAGLVARAAANAERNGLSNARFEVR 370 Query: 342 NLEEDVTKQPW-AKNGFDKVLLDPARAGAAGVMQQIIKL----EPIRIVYVSCNPATLAR 396 +L V + W D+VLLDP R+GA +++ I ++ +P R+VYV+C+P TLAR Sbjct: 371 DLYTQVGELEWLGGQPVDRVLLDPPRSGALAIVEHIDRIAWAGKP-RLVYVACSPETLAR 429 Query: 397 DSEALLKA-GYTIARLAMLDMFPHTGHLESMVLFSR 431 D+ L+ GY ++ ++DMFPHT H+ES+ LF R Sbjct: 430 DAAVLVGTHGYRLSAAGVMDMFPHTAHVESIALFER 465 >UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU49_9GAMM Length = 439 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/428 (33%), Positives = 229/428 (53%), Gaps = 15/428 (3%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + DL G+GV R +GK FI G LP E E K+ Y A V+ ++ SP R Sbjct: 14 LICEIVDLIHDGRGVGRPDGKACFIDGALPGETVEFRRHNQKRNYDEAHVINIVAASPSR 73 Query: 77 ETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALAR--LMKHDVSEVIADVPWGYRRR 130 P C HF CGGC QH A + +Q+ +L R L + ++ WGYRRR Sbjct: 74 VEPLCKHFPRCGGCTLQHLDHGAQIAFKQQQLLDSLQRVDLSPEIILPALSAPQWGYRRR 133 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 ARL++ K Q+ +GFR AGS I + +C +LA L ++ + + + + L Sbjct: 134 ARLAVQR-AKDGQIIVGFRNAGSRRIEPITECHVLAEPLPEIVAALPGWMVNFPSGIRLS 192 Query: 191 HVELVQATSGTLMILRHTAPLSSADREK-LERFSHSEGLDLYLAPDSEILETVSG---EM 246 +EL+ A + + + + S+++RE L + ++ + + + G + Sbjct: 193 EIELLSADNAVAIAIEASRVPSASEREAMLAELTFTDAQLWWKTEKQTAFKRIDGGDQAL 252 Query: 247 PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRV---LDLFCGMGNFTLP 303 ++ + L P F+QVN+ +N++M+ + L+ + +R +DLFCG GNF+LP Sbjct: 253 HVVLNDRIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCGSGNFSLP 312 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA Q V+G+EG+ LV K Q+NA+ N + N F +L + T K D VLLD Sbjct: 313 LAAQFDRVIGIEGLSELVGKAQENAQRNNVSNAEFVVSDLS-NWTGMRKIKGKVDLVLLD 371 Query: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 P R+GAAGVM ++K + ++VY+SC+P+T+ RD + L++AGY + ++DMFPHT H+ Sbjct: 372 PPRSGAAGVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEAGYKMIAAGVMDMFPHTAHV 431 Query: 424 ESMVLFSR 431 E++ L + Sbjct: 432 EAIALLEK 439 >UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBC1_9GAMM Length = 458 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 151/454 (33%), Positives = 230/454 (50%), Gaps = 28/454 (6%) Query: 1 MAQFYSAKR-----RTTTRQIIT----VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAE 51 MA+F S + + R +I+ + V L G+G+A NGK +F+ G L E Sbjct: 1 MAKFRSKNKPLRVFKPQQRSVISGQHLIPVASLADDGRGIAAINGKNVFVTGALAGETVS 60 Query: 52 VTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL 111 K + A VV +SP R P C +F CGGC QH Q + K L++L Sbjct: 61 ARYVASHKTHDEAVVVSVSKNSPHRVKPLCEYFDQCGGCDLQHLDYPSQTQHKWDRLSQL 120 Query: 112 ----MKHDVSEVIADV---PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPI 164 + +D V+ + PW YR RAR +++ +GFR+A S +VD+ +C I Sbjct: 121 FSPWLDNDDRLVMGSITGDPWSYRHRARFAVD--ASKHSCNIGFRQARSHKVVDITRCSI 178 Query: 165 LAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMI-LRHTAPLSSAD-----REK 218 + + L VR + SL+ + V + + +SG + I + T PLS++D Sbjct: 179 VFDGINDALATVRRLVKSLKNRSVINEVSITEDSSGNIGIAIFCTRPLSASDIAAVSEHA 238 Query: 219 LERFSHSEGLDLYLAPDSEILETVSGEMPW-YDSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 + H E A E S + + DS + + ++ DF QVN +N ++VA Sbjct: 239 ITHDCHIEVRSSATATQCMFPEDRSVALSYTLDSYDVVIPYTVDDFTQVNPAINHRLVAL 298 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 ++WL + +D V D FCG+GNF+LP++T A VG E V ++V+K + NA N + N Sbjct: 299 TIKWLQLGEKDIVADFFCGIGNFSLPISTFVARTVGFEWVASMVDKARSNAVFNHIDNCE 358 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARD 397 F +L D + F+K LLDP RAGA + +Q+ + + RIVY+SCNP TLARD Sbjct: 359 FKVIDLTAD---RLVIDEDFNKALLDPPRAGAEKICKQLAESKLERIVYISCNPRTLARD 415 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 S+ L + Y + L++ DMFP T H E + LF+R Sbjct: 416 SKILTQGNYQLTELSLADMFPQTVHSEVVALFTR 449 >UniRef50_A6GQJ2 23S rRNA (Uracil-5-)-methyltransferase (Fragment) n=1 Tax=Limnobacter sp. MED105 RepID=A6GQJ2_9BURK Length = 401 Score = 238 bits (606), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 206/378 (54%), Gaps = 20/378 (5%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V++ +D G+ +GK FI G + E +T K Y++ + ++ L+ R Sbjct: 17 VQVAIESIDLDANGIGHVDGKVHFIDGAITGETVVAEITRVKPSYSKGRTLQVLNSVSTR 76 Query: 77 ETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADVP---WGYRR 129 TP+CPH+GVCGGC QH A V ++ R+ L R+ + +++ + WGYR Sbjct: 77 TTPKCPHYGVCGGCAMQHIEPNAQVAIKNRALEDLLQRIGRQTPEQMMPPIYGSFWGYRH 136 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 RARLS ++ K + +GF + SS + D++ C +L + ++ + L +L + Sbjct: 137 RARLSTRFVIKKDRFFVGFHEKSSSYVADMQVCHVLPKHVSNMIVPLGNMLVTLSIFMRV 196 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP---------DSEILE 240 +EL T M+LRH PLS +D + L F + G+D +L P +++ Sbjct: 197 PQIELAVGDGVTAMVLRHLEPLSESDLDTLRAFGNEWGVDWWLQPGGPATAHRLEADKPV 256 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 ++ +P S G+R+ F P DF QVN +N M++RA+ LD++PEDRVLDLFCG+GNF Sbjct: 257 DLTYRIP---SFGIRMRFRPTDFTQVNHMINDAMISRAVSLLDLKPEDRVLDLFCGLGNF 313 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG-FDK 359 +LPLAT+++ V G EG LV + +NA NGL + T +H +V W G FDK Sbjct: 314 SLPLATKSSYVKGFEGSQDLVSRAGENAEFNGLADKTEFHVRNLFEVETPEWESWGQFDK 373 Query: 360 VLLDPARAGAAGVMQQII 377 +L+DP R GA + + I+ Sbjct: 374 LLVDPPRDGALEICKAIV 391 >UniRef50_A0LDR0 RNA methyltransferase, TrmA family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LDR0_MAGSM Length = 424 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 145/428 (33%), Positives = 227/428 (53%), Gaps = 19/428 (4%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + ++++ L S G G+ H+G +F+P P + E+ + +K++A A++++ + SP R Sbjct: 1 MQITIDKLASGGSGLGFHDGMAIFVPNTAPGDLVEIEIKTKRKRHAHAELIKIIQASPNR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVP-WGYR 128 P CP + CGGCQ QH + + K+A + ++H + + + P GYR Sbjct: 61 CEPICPVYHQCGGCQLQHVNQTTRNTFKAAVVKEALQHIGKFENPPMQPLQSAQPETGYR 120 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 RR L + ++ +GF + S IVD+ CPIL P+L+AL+ +R + L Sbjct: 121 RRCGLKIYWV--RDHAVVGFYQTASKRIVDLPNCPILHPKLDALIHPIRTLVSELSVRER 178 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD-LYLAP--DSEILETVSGE 245 L V+L G MIL LS+ D+E L F+H+ +D L++ ++ +S E Sbjct: 179 LPQVDLSCGDEGVGMILHLLRKLSAKDKEILTTFAHTHKIDQLWIQSGRKEDLTPFISQE 238 Query: 246 MPWYDSNGL-RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 Y +G +L F P DF Q + N+++V + L W + RVLDLF G+GNFTLPL Sbjct: 239 PLRYSPDGKSQLKFMPGDFTQAHFEQNRQLVEQVLAW--IGQGQRVLDLFSGLGNFTLPL 296 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A Q V G E V++G+ N L+ +VTF +L + + N D +++DP Sbjct: 297 ARQFTRVTGYESYEPAVKRGRSNTTLH--PSVTFKTMDLFSETALKTLPLNQVDAMVVDP 354 Query: 365 ARAGAAGVMQQIIKL-EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 R GA + +QI P IV+VSC+PAT ARD+ L GYT+ ++ LDMFP T H+ Sbjct: 355 PRDGAVNLAKQIKDAGGPATIVWVSCDPATFARDAAILCAGGYTMEQVKPLDMFPMTSHV 414 Query: 424 ESMVLFSR 431 E + LF R Sbjct: 415 EVVALFKR 422 >UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXR9_DICNV Length = 424 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 157/426 (36%), Positives = 223/426 (52%), Gaps = 21/426 (4%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 V+V DLD G+GVA+ +G+ +FI G LP E T KKQ+ A V + SP+R Sbjct: 6 AVTVFDLDYQGRGVAKIDGQVVFIEGALPDETVTFCKTSAKKQFIEAVVDEIIEPSPQRV 65 Query: 78 TPRCPHFGVCGGCQQQHASVDLQ----QRSKSAALARLMKHDVSEVI---ADVPWGYRRR 130 PRCP + CGGC QH Q Q+ L RL V+ A W YRRR Sbjct: 66 APRCPFYDRCGGCALQHWHSQEQLLGKQKLWLTQLQRLGGAQPEHVLLPLAGKEWRYRRR 125 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 ARL+++Y + + +GF+ S D+V V C IL L A LP + L +L ++ Sbjct: 126 ARLAVHY--ENDVIAVGFKAKRSHDVVAVNDCLILQEHLAAALPLLPDFLRALLPVK--- 180 Query: 191 HVELVQATSG----TLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEM 246 V+ + T+G L + LS A EK +++ G L + L ++ Sbjct: 181 -VDEILLTAGEKVAALTLRTKKRALSPAWGEK---WANLAGAHWQLWENDRCLFGEPNDL 236 Query: 247 PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT 306 + +G+ L F+P DFIQVNA VN+ ++ L WL + VLDLF G+GNF+LPLA Sbjct: 237 YYQPISGVTLHFTPDDFIQVNASVNEALIQTVLAWLAPLEKSEVLDLFSGLGNFSLPLAY 296 Query: 307 QAASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 + A V VEGV A+V++G + A L + + +L Q + LLDP Sbjct: 297 KGARVTAVEGVRAMVQRGAKMAAEQQLSSRLEMQCMDLFSVSAAQMKSWQSAKSWLLDPP 356 Query: 366 RAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES 425 RAGA V+Q + K P +IVYVSCNPATLARD L G+ + R +++MF H+ H+ES Sbjct: 357 RAGAHAVVQALPKKFPEKIVYVSCNPATLARDVAILQSKGFHLERGQVVNMFAHSAHIES 416 Query: 426 MVLFSR 431 ++L +R Sbjct: 417 VILMTR 422 >UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APX5_PELPD Length = 446 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 137/431 (31%), Positives = 212/431 (49%), Gaps = 18/431 (4%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 +S++ L G GV R +GK F+P P + V +T +K+ Y A+++ ++ +R T Sbjct: 10 ISIDRLAFGGSGVGRIDGKVCFVPFACPGDELLVRITAEKRSYLTARIISIVTPGQDRIT 69 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV---SEVIADV---PWGYRRRAR 132 P CP FG CGGC QH + Q K A + E++ADV P Y R+R Sbjct: 70 PPCPLFGSCGGCSWQHIAYHRQLEEKRRIFADALWRGARAPGELVADVVASPLTYGYRSR 129 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQ-CPILAPQLEALLPKVRACLGSLQAMRHLGH 191 + L++GF + G+ + D Q CPI P + +L +R L + + Sbjct: 130 VQFKLHGAGPNLRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPDPTKIPQ 189 Query: 192 VELVQATSGTLMILRHTAP----LSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMP 247 + L A G ++I+ + + RE+ + + L L S + + ++ Sbjct: 190 INLECAEKGAVVIVNYIGDDHQGAKAFFRERAAQLEQATALYLQTGRKSTLQKVFGDDLL 249 Query: 248 WYDSNG-------LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 Y G LT+ P F QVNA N ++ E+ D + +D++LDL+CG GNF Sbjct: 250 QYSQEGESSTAPACSLTYRPGGFAQVNAAQNSALLRLVREFADCRRDDQILDLYCGNGNF 309 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 +LPLA A+V G+E + + NARLNG+ NV F + K F + Sbjct: 310 SLPLARGVAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAGKLMGDGRRFPTI 369 Query: 361 LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 +LDP R+GAA +++ I +L +I+Y+SC+P+TLARD L GYT+ +DMFP T Sbjct: 370 ILDPPRSGAADLLEHIPRLGADKIIYISCDPSTLARDCGVLFGKGYTVVSSVPVDMFPQT 429 Query: 421 GHLESMVLFSR 431 HLES+ L R Sbjct: 430 FHLESVTLLRR 440 >UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Idiomarina loihiensis RepID=Q5R111_IDILO Length = 450 Score = 226 bits (577), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 158/455 (34%), Positives = 233/455 (51%), Gaps = 31/455 (6%) Query: 1 MAQFYSA-KRRTTTRQIITVSVNDLDSFGQGVARHNGK---TLFIPGLLPQENAEVTVTE 56 MAQF+ KR + + + V+ LD + V R K T FI G LP E E T Sbjct: 1 MAQFFKPQKRNKSVSKTLKGQVSALDHQARAVVRAAVKGQSTRFIMGALPGEVIEYK-TA 59 Query: 57 DKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD- 115 K +++ SD RE P C ++ CGGC QH Q K + L + Sbjct: 60 GKHSGHLERILEPSSD--RREVP-CEYYASCGGCDFQHIDEQKQLAHKRQVVEELFQKFG 116 Query: 116 -VSEVIADVPWG---------YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPIL 165 + + +PW YRRR RL+ +L K Q+L +GFR+A S IV ++ C + Sbjct: 117 VFNPQTSSLPWQEPLVSEPMRYRRRVRLATRWLGKEQKLLIGFREAQSHHIVPIEDCLVA 176 Query: 166 APQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHS 225 L + + L + LGH+E + T+ +++LR T L + L+ + Sbjct: 177 DEILLHCVNTLYPLLNTSTVASKLGHIEAIN-TNTPVILLRITEALPGDAMQALQEWQTV 235 Query: 226 EGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 +++L ++++ MP+ S +G +L F P DF+QVN G+NQ+MV +A++WL Sbjct: 236 NKTNIWLQSENDLQPLAGAAMPFDTSIDGDKLYFQPGDFLQVNGGINQRMVQQAMDWLKP 295 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + RV D F G+GNF+LPLA +A SV+ VEGV + E+ + NA NG+ N++ +L Sbjct: 296 EKTQRVYDFFAGIGNFSLPLARRAQSVLAVEGVYRMAEQTRINAESNGMDNLSSLSADLN 355 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE----PIRIVYVSCNPATLARDSEA 400 E +T K D LDPAR GA GV++ + KL+ P RI+YVSC P TLARD Sbjct: 356 E-ITASDLGKPA-DLWCLDPARPGAEGVVKLLHKLKPEHRPQRILYVSCAPDTLARDIAG 413 Query: 401 LLK----AGYTIARLAMLDMFPHTGHLESMVLFSR 431 +L Y I L+ +DMFP T H+E+MV R Sbjct: 414 MLTESKGCNYRIIGLSTVDMFPQTHHIETMVCLER 448 >UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=6 Tax=Geobacter RepID=Y1748_GEOSL Length = 438 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 144/434 (33%), Positives = 210/434 (48%), Gaps = 23/434 (5%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + L G G R GK F+P P + + V DK Y + + L SP+R Sbjct: 6 IRIESLAFGGAGFGRLEGKACFVPFTAPGDLVRIRVAVDKPSYLEGETLEILEPSPDRIA 65 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAAL-------ARLMKHDVSE-VIADVPWGYRRR 130 P CP FG+CGGC QH D Q +K R+ + V+ +AD P+GYR R Sbjct: 66 PPCPVFGICGGCSWQHLRYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVADNPFGYRCR 125 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDV-KQCPILAPQLEALLPKVRACLGSLQAMRHL 189 A+ + + +L MGF + GS ++D +C I P + L +R L + Sbjct: 126 AQFKIRW--SGGRLHMGFYRRGSHYVIDAPAECVICDPAINLTLRDLRLVLPDFSEPDKI 183 Query: 190 GHVELVQATSGTLMILRHTA---PLSSAD--REKLERFSHSEGLDLYLAPDSEIL----- 239 ++ G ++++ H P +AD R + G+ L I+ Sbjct: 184 PQIDAATGEDGHVLLVVHYIGDNPGRAADFFRSIQPHLASVTGIHLQCGRKDSIMHVWGV 243 Query: 240 ETVSGEMPWYDSNG--LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 +++S +P G L L+F F QVN N+ +V++AL V P RVLDLFCG Sbjct: 244 DSLSYTVPGLGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGVGPGRRVLDLFCGN 303 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF 357 GNF+LPLA+ A +VGVE ++ ++NA NG+ +V F + + + A F Sbjct: 304 GNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGEHF 363 Query: 358 DKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 D V+LDP R GA + ++ L P RIVYVSC+P TL RD L KAGY + +DMF Sbjct: 364 DTVILDPPRTGARDAVGEVAILAPERIVYVSCDPPTLGRDLGVLRKAGYRVVGSHGVDMF 423 Query: 418 PHTGHLESMVLFSR 431 P T H+ES+ L R Sbjct: 424 PQTYHIESVTLLIR 437 >UniRef50_UPI0000E0E6C1 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E6C1 Length = 484 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 141/489 (28%), Positives = 232/489 (47%), Gaps = 63/489 (12%) Query: 1 MAQFYSAKRRTTTRQ-----IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVT 55 MAQF+ + + +++ ++T+ ++ GQG+ + + + + G LP E V +T Sbjct: 1 MAQFFKPQHKASSKAKRQLPVVTLEISGFTLNGQGICKSHSPVVIVSGALPGETVIVQIT 60 Query: 56 EDKKQYARAKVVRRLSDSPERETPRCPHFGV-----------------CGGCQQQHASVD 98 KKQ V+ ++ +R CP F V CGGCQ Sbjct: 61 AQKKQVWLGSVISVITSHAQRIAAPCP-FAVGAQRDNKVLPTQLAMPTCGGCQLSFVEPS 119 Query: 99 LQQRSKSAALARLMKHDVSEVIADVPW--------GYRRRARLSLNYLPKTQQLQMGFRK 150 K AL + + + ++PW YRR+ARL+++ K Q +++GFR+ Sbjct: 120 ALLALKQTALDEYVHQHIGAI--ELPWRAPVLSAPQYRRKARLAIDARDK-QAIKVGFRQ 176 Query: 151 AGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAP 210 + ++ + QC +L L+ +L + + H+GH+ L+++ ++ P Sbjct: 177 TSAKTVMSIPQCEVLEGALQPVLNAIHTSSAQWHWLIHVGHITLLESRDQIVVAFNTQQP 236 Query: 211 LSSADREKLERFSHS-------------------------EGLDLYLAPDSEILETVSGE 245 LS L+ FS + + L L+ A D++ + VS Sbjct: 237 LSKQALAALQAFSQAHEVLIAVTVKGVPKGVPSLPHNDDAKWLTLHWADDNDAMN-VSLA 295 Query: 246 MP--WYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 P W S + + DFIQVNA +NQ M+ +++ L + P+DRV+DLFCG GNF++ Sbjct: 296 QPDLWLTSIDECQYPVGLDDFIQVNASLNQAMIYTSIDLLALAPDDRVVDLFCGSGNFSV 355 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 P+A Q V+G+EGV A+V++ Q A +G+ NVTF H +L +K+LL Sbjct: 356 PIAKQTEYVLGIEGVEAMVQQANQGAVASGVDNVTFLHADLTTSEAMHAIKAAKCNKLLL 415 Query: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 DP+R GA ++ Q+ + RIVYVSCNP + D + LL AG+ DMF T H Sbjct: 416 DPSREGAKAILAQVDLQQFERIVYVSCNPQSWVHDIQLLLDAGFACQHTQFFDMFAGTTH 475 Query: 423 LESMVLFSR 431 E + +F+R Sbjct: 476 TELVSVFTR 484 >UniRef50_Q2NVP1 Putative RNA methyltransferase n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NVP1_SODGM Length = 262 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 126/281 (44%), Positives = 166/281 (59%), Gaps = 24/281 (8%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MAQFYSA RR TR+ +TVS + +D+FGQG+ARH GK +FIPGLLP E EV +TEDK+Q Sbjct: 1 MAQFYSANRRVATRERVTVSCDQMDAFGQGLARHRGKVMFIPGLLPGEQVEVRLTEDKRQ 60 Query: 61 YARAKVVRRLSD--SPERETPRCPHFGVCGGCQQQHASVDLQQ-RSKSAALARLMKHDVS 117 Y+R +V+RRL+D S R R + + R + +AR V Sbjct: 61 YSRGEVIRRLNDPLSGSRPAVRIMACAAAVSSISASRCSSVPRPRCWLSFIAREQPGAVP 120 Query: 118 EV--IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPK 175 +V I + YRRR RL L Y PK L MG+R+A SS++VD+ CPIL P+LE L+ Sbjct: 121 DVAQIGSSAYCYRRRTRLGLVYRPKGCHLSMGYRQAKSSELVDIHACPILRPELEQLIAP 180 Query: 176 VRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD 235 +RACL L+A+ HLGHVEL A +G L+++RH PL DR +L Sbjct: 181 LRACLEGLRAVAHLGHVELAAADNGPLVVVRHLQPLGEEDRRRL---------------- 224 Query: 236 SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA 276 L+ + GE P+Y L L FSPRDFIQ+N VN++MVA Sbjct: 225 ---LDCLRGEPPFYRIAALTLRFSPRDFIQINDEVNRQMVA 262 >UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4B1_PELCD Length = 434 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 148/438 (33%), Positives = 209/438 (47%), Gaps = 32/438 (7%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I + + L G GV R+ GK +F+P +P ++ + + KK+Y A+ R L S Sbjct: 8 IDDLHIESLAYGGSGVGRYAGKVVFVPLTVPGDHVQCRIVRQKKRYIEARAERVLVASEH 67 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSEVIADVP----WGY 127 R P CP FG CGGCQ H Q K L R + D V VP WGY Sbjct: 68 RIAPACPAFGQCGGCQWLHLPYAEQCHWKETIFRDFLVRKLDVDSELVRPIVPSPQQWGY 127 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R R +L PK +GF + GS ++ V CPIL P L +R+ + + + + Sbjct: 128 RSRVQLKCLNTPKG--FLVGFYRRGSHYVIPVDHCPILHPLLNQAKDLLRSWIENTRWSQ 185 Query: 188 HLGHVEL-------VQATSGTLM-----ILRHTAPLS-SADREKLERFSHSEGLDLYLAP 234 + ++L V+A L + H P + SA+ + L P Sbjct: 186 FVSQIDLAVDDQERVRAVVHCLANDVDDFVTHLKPGALSANMGLFVQTGRKHNLQHVCGP 245 Query: 235 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 ++E D+ LRL + P F Q+N N+ MV + L P RVLDLF Sbjct: 246 VELLIEV--------DTPELRLGYGPGGFAQINLPQNRAMVREVVGTLVSNPPGRVLDLF 297 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 CGMGNF+LP+A A VVGVE +E + NARLN ++NV+F+ T+ A Sbjct: 298 CGMGNFSLPVARLAQEVVGVEAYLQSIEMARLNARLNEIENVSFFAREAYGAATEYG-AD 356 Query: 355 NGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 D V++DP R+GA V ++++ + P RI+YVSC+P TL RD LL GY + Sbjct: 357 GAIDLVIMDPPRSGAYDVARELVTVRPARILYVSCDPPTLVRDLLPLLHNGYRLVWSRPF 416 Query: 415 DMFPHTGHLESMVLFSRV 432 D+FPHT H ES+ RV Sbjct: 417 DLFPHTHHTESITFLERV 434 >UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfotalea psychrophila RepID=Q6ANA2_DESPS Length = 444 Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 144/454 (31%), Positives = 233/454 (51%), Gaps = 61/454 (13%) Query: 19 VSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 +++ + + G G+ + + GK + IPG LP E + T+ +DKK YA K+ + ++ R Sbjct: 4 LTIEKVINGGYGLTKTDEGKIVLIPGTLPGEEIQTTIHQDKKGYATGKIKKIVTAHDGRI 63 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADV--------PW 125 TP CP+ CGGC QHA+ +LQ K A +L R K ++++ A + + Sbjct: 64 TPPCPYIRNCGGCNLQHATAELQLEIKEAIVKESLTRSGKPELAKASALIQAPIASPQDF 123 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR+R RL ++ + +MGFR+ S DI+ +K+C + +PQ+ +L + Sbjct: 124 FYRQRIRLHID-----EYGRMGFRQHQSHDIIAIKKCLLASPQINEVLTALE-------- 170 Query: 186 MRHLGHVELVQATSGTLMIL--------------RHTAPLSSADREKLERFSHS-EGLD- 229 H H E+ Q S +IL R + P AD + +R +D Sbjct: 171 -EHEEHGEICQLASQLELILNPATEQVQLVYLLKRKSRP---ADTNRAKRLGEKIASVDC 226 Query: 230 LYLAPDSEILETVSGEMPWYDSNGLRLTFSPR--------------DFIQVNAGVNQKMV 275 +Y ++ L++ + P + L L + P+ F QVN N +M+ Sbjct: 227 IYFIGENFPLQSAYCKTPE-EGKVLSLDYKPQALAGKKISMQWEVNGFCQVNIKQNVQMI 285 Query: 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335 L + D++ E+ VLDLFCGMGNF++PLA QA +V G EG + + ++NA NGL N Sbjct: 286 ETVLAFADIRDEESVLDLFCGMGNFSIPLACQAKAVTGFEGQGSAIRSAKKNALNNGLDN 345 Query: 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLA 395 +FY + + + + K +D V++DP R GA + Q+ KL R++Y+SC+PATL Sbjct: 346 CSFYQKPVHKACAELIADKRVYDCVIIDPPRQGAPELAGQLAKLCQKRLIYISCDPATLT 405 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 RD L K G+ I ++ +DMFP T H+E++VL Sbjct: 406 RDLAELSKQGFQIKKIQPIDMFPQTYHIENVVLL 439 >UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M217_GEOSF Length = 437 Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 138/436 (31%), Positives = 218/436 (50%), Gaps = 24/436 (5%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V++ L + G G R +GK F+P P + A V +T +KK YA +++ +S S R Sbjct: 4 VEVAIEKLANGGAGFGRCDGKAFFVPFTAPGDVARVRITCEKKSYAEGELIELVSSSALR 63 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV---SEVI-----ADVPWGYR 128 P CP FG+CGGC QH Q K+ A L+ E + A P+GYR Sbjct: 64 VKPPCPVFGICGGCNWQHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYGYR 123 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDV-KQCPILAPQLEALLPKVRACLGSLQAMR 187 R +L +NY + + ++GF + S +VD+ C I + L +R + Sbjct: 124 SRVQLKVNY--QGGKTRLGFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPDPG 181 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDL----YLAPDSEILETVS 243 ++ +++ + ++ ++ + A S A+ + H E DL ++ + Sbjct: 182 NISQIDIARGDDESISVIVNHAGASVAEVSEY-LLQHREISDLIGSMFIRHKNSTTSIFG 240 Query: 244 GEMPWYDSNG--------LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 E Y +G L FS F Q+N N +++ ++ + +++VLDL+C Sbjct: 241 AEHLSYRISGNTLPGGSEKTLFFSKDAFSQINYQQNMQLIRVVSDFAALTGKEKVLDLYC 300 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G GNF++PLA +AA V G EG + ++NA NG+ N++F+ + V K A+ Sbjct: 301 GNGNFSIPLADKAAHVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKKLAAARE 360 Query: 356 GFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 FD V+LDP R GAA VM I L RI+YVSC+PATLARD L K G+ + + +D Sbjct: 361 TFDVVVLDPPRNGAAEVMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQVINIQGVD 420 Query: 416 MFPHTGHLESMVLFSR 431 MFP T HLES+ L ++ Sbjct: 421 MFPQTYHLESVTLLTK 436 >UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0F7_DESAC Length = 424 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 144/437 (32%), Positives = 223/437 (51%), Gaps = 35/437 (8%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 +I ++V L G G+ H+GK +F+ G +P + + ++KK+YARA++++ + S + Sbjct: 1 MIELTVTTLAHGGAGLGHHDGKAVFVFGAIPGDRILCQIVQNKKRYARAELIKVIEPSDQ 60 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA-RLMKHDVSE--VIAD-VP----WGY 127 R+ P C HFG CGGC Q S + Q R K ++H + VI D VP +GY Sbjct: 61 RQEPACSHFGDCGGCDWQQLSYEQQCRWKQQIFVDSCVRHGRIDQGVIRDLVPAPQEFGY 120 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL-GSLQAM 186 R R + P Q +GF + GS +++DV+ CP++A + A + R GS+ A Sbjct: 121 RSRVQFKCYNSP--QGFILGFYRRGSHNVIDVRHCPVIALPIAAQMTAWRTLFDGSVYA- 177 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEM 246 V + G+ LR A+ E + + LD A D +L + Sbjct: 178 ---SGVSQIDVAVGSDDALRTIVHYRGAETEAFCAWL-AGCLD---AVDGAVLVQTGRKN 230 Query: 247 PWY------------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 P D + L + P F QV+ N+++VAR +E +V +D VLDL+ Sbjct: 231 PQILLQGQVDLAIRVDEPPMELHYGPGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLY 290 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 CGMGNF+LPLA +A +VVGVE + +N GL N TF+ ++E + + W + Sbjct: 291 CGMGNFSLPLARRAGAVVGVEDYAPSISYADRNRDTLGLTNATFHACSVETFLGR--WRR 348 Query: 355 NGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 D ++LDP R+GA + +++ P RIVYVSC+ TL RD AL ++ YT+ + L Sbjct: 349 TA-DVIVLDPPRSGAREAVAGMMRCRPRRIVYVSCDQQTLMRDLTALAQS-YTVTSIQAL 406 Query: 415 DMFPHTGHLESMVLFSR 431 DMFP T H E + + R Sbjct: 407 DMFPQTCHTEVLAVLDR 423 >UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n=176 Tax=Firmicutes RepID=Y363_BACC1 Length = 460 Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 141/453 (31%), Positives = 229/453 (50%), Gaps = 40/453 (8%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + I V DL G GVA+ G +F+ LP E A++ + + KK +A ++++ ++SP Sbjct: 13 EFIDVVFEDLTHDGAGVAKVKGYPIFVKNGLPGEEAQIKIIKVKKNFAFGRLMKLHTESP 72 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP---------- 124 R+ CP + CGGCQ QH + + Q ++K + +M+ ++DVP Sbjct: 73 YRKDAECPVYNQCGGCQLQHLTYEGQLQAKEKQVRDVMQRIGG--LSDVPVHPVLGMKNP 130 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKV-RAC---- 179 W YR +A++ + + L GF + G+ DI++++ C I A + + L+ +V R C Sbjct: 131 WVYRNKAQVPIG--EREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHG 188 Query: 180 LGSLQAMRHLGHVELVQATSG------TLMILRHTAPLSSAD---REKLERFSHSEGLDL 230 + + R+ G + V A G L+ + TA L + E +F + + Sbjct: 189 ISAYNEERNKGTLRHVMARYGQVTGEIMLVFITRTAELPNKKAIIEEIATKFPEVKSIVQ 248 Query: 231 YLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + P + + G YD G ++ S R F QVN + + + LE+ Sbjct: 249 NVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAK 308 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + + V+D +CG+G+ +L LA +A V GVE VP +E ++NA LN + N F Sbjct: 309 LDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVG-- 366 Query: 344 EEDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 E +V W K G D +++DP R G ++ II ++P R+VYVSCNPATLARD + Sbjct: 367 EAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKV 426 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L + GY + +DMFPHT H+E +VL SRV+ Sbjct: 427 LEEGGYKTQEVQPVDMFPHTTHVECVVLMSRVE 459 >UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUT8_SYNWW Length = 419 Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 142/438 (32%), Positives = 221/438 (50%), Gaps = 47/438 (10%) Query: 20 SVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETP 79 S+ ++ G+GVAR GK +F+P LP E E+ +T+++ ++ARA++V+ L SP R TP Sbjct: 4 SIERINHQGEGVARVGGKVVFVPQALPGEVVEIVITDNRARFARAQLVQLLEASPYRLTP 63 Query: 80 RCPHFGVCGGCQQQHASVD----LQQRSKSAALARLMKHDVSEVIADV-----PWGYRRR 130 CPH+ CGGC QHA + L+++ A+ R+ K ++ V+ V PW YR + Sbjct: 64 LCPHYYECGGCAYQHAKYEEELVLKRQVVKDAIQRIAK--IATVVEPVLSMPEPWHYRNK 121 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 + K Q+ +GF + S ++ + C +++ ++ L +V+A L Sbjct: 122 VTWHMAATGK-QEPVLGFFREASRQLLPISHCRLISEKMNCLTARVKALL---------- 170 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL-------DLYLAPDSEIL---- 239 L+Q +G+ + LR SS D + + +G +L DS ++ Sbjct: 171 --PLIQPATGSEITLRE----SSLDHSTMLIWKGLQGWPAPEIWAELSAISDSVVVIEKN 224 Query: 240 --ETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 +SG D G ++ SP F QVN ++M+ L +D + VLD FCG Sbjct: 225 TCHYISGPQRLLDKLGQVKFALSPGAFFQVNHCQAEEMIRLILSLVDFSGKT-VLDAFCG 283 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +G+ L LA QA V+GVE + + NA G+ NV F H E V + Sbjct: 284 VGSIALNLARQAERVIGVESYEPAIHDARSNAIEAGIYNVEFIHGFCERVVAR---IDEP 340 Query: 357 FDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 D ++LDP R+G ++Q ++ P IVYVSCNPATLARD + GY + +D Sbjct: 341 IDVIVLDPPRSGCKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPID 400 Query: 416 MFPHTGHLESMVLFSRVK 433 MFP T H+E++VL SRVK Sbjct: 401 MFPRTYHVETVVLMSRVK 418 >UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7X4_AMMDK Length = 436 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 147/439 (33%), Positives = 219/439 (49%), Gaps = 29/439 (6%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q I + + DL+ G+GV R +G +FIP LP E VTE KK YARA++ LS S Sbjct: 5 QQIVLEITDLNHAGEGVGRFSGLVVFIPFALPGERVRARVTEMKKSYARARLEEILSPSS 64 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA-------LARLMKHDVSEVIA-DVPWG 126 R P CP FG CGGCQ H + Q K+ L +L + +V ++ + PW Sbjct: 65 GRVLPPCPSFGSCGGCQLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGMENPWH 124 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDI---VDVKQCPILAPQLEA-------LLPKV 176 YR + RL + + + ++ +G S I +D C IL QL A L+ K Sbjct: 125 YRNKVRLHVAW--EGRKPVLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGLIKKH 182 Query: 177 RACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS 236 L L A+ + L AT T+++L + S + ++ + + + + + Sbjct: 183 AEMLAGLTAVS----LRLAAATGETMVVLEGASEHYSRWKRLVDELTAAVPVTTVVRVGA 238 Query: 237 EILETV-SGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 E V GE DS +GL S F QVN ++ + LE+ + +RV+D + Sbjct: 239 RGKEEVLYGEGHITDSLDGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGRERVIDAY 298 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 CG+G TL LA +AA V+G+E P V NA NGL +V+F + E+V + A+ Sbjct: 299 CGVGTITLFLARKAAQVIGIEISPEAVALASVNAAQNGLSHVSFV-KGAAEEVLPELLAR 357 Query: 355 NG-FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 G FD V+LDP R G ++ +++ + R++YVSCNPATLARD L GY + + Sbjct: 358 EGMFDLVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATLARDLGFLSAQGYRVQEVQ 417 Query: 413 MLDMFPHTGHLESMVLFSR 431 +DMFPHT H+E + R Sbjct: 418 PVDMFPHTYHVECVAYLCR 436 >UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTJ5_ALIAD Length = 449 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/425 (30%), Positives = 218/425 (51%), Gaps = 23/425 (5%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G GVA G T+FIP LLP E A V + + +K++ARA+++ R +D+P+R PRCP F C Sbjct: 26 GDGVAAIGGMTVFIPFLLPGERARVRIEQVEKRFARARLLARANDAPDRVEPRCPVFARC 85 Query: 88 GGCQQQHASVDLQQRSKSAALARLMKHDVSEV-------IADVPWGYRRRARLSLNYLPK 140 GGCQ QH + Q K A + R+ + E + P+ YR + ++ + + Sbjct: 86 GGCQVQHMAYAAQAAWKEARIRRMAERLGLEAGVVRPIETSHTPYRYRNQVQMPVRWNAT 145 Query: 141 TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQAT-- 198 Q+++MGF + GS D+ + C ++ ++ +L + R L SL + H +V+ + Sbjct: 146 AQRVEMGFFELGSHDMAVTETCLLVPEAMDDVLRRARWFLTSLGSTAQFVHHVIVRQSHA 205 Query: 199 SGTLMILRHTAPLSSADREKLERFSHSEGLDL-----------YLAPDSEILETVSGEMP 247 +G + ++ A + + + RF + + + +E+++ G Sbjct: 206 TGDMAVVFALATDDPSVKRSVGRFHAPQVVQVAVTVQPRAHGPVWGDGAEVMK--GGSHL 263 Query: 248 WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ 307 + GLR+ +SPR F+QV A + ++M + ++V+ D V+D +CG+G TL LA+ Sbjct: 264 EENLCGLRVRWSPRSFLQVQADMAERMYHHVVRAVEVRETDVVIDAYCGIGAMTLLLASH 323 Query: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA 367 AA VGVE V + + NA+LN ++N F + +E + + A N D ++ DP R Sbjct: 324 AARAVGVEEVEDAIADARANAKLNRVRNAEFVVDRVERWLPRFVEAGNRADVLVFDPPRK 383 Query: 368 GAAGVMQQIIKLEPI-RIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 G + + R+VYVSCNPATL RD L G+ + + DMFP T H+E + Sbjct: 384 GVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLAARGFYVTDIQPFDMFPQTSHVECV 443 Query: 427 VLFSR 431 V R Sbjct: 444 VTMRR 448 >UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veillonellaceae RepID=D1BLZ0_VEIPT Length = 457 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 145/451 (32%), Positives = 220/451 (48%), Gaps = 42/451 (9%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V+++ + S G+GV R T+F+P LP E +V++T KK YA +++ ++ +P R Sbjct: 12 VLVTIHGIGSSGEGVGRVEDFTVFVPFTLPGETVKVSITMVKKTYATGRLLEIVTIAPNR 71 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---HDVSEVIADV-----PWGYR 128 P C +G CGGCQ QH + + Q K+ + +++ H +++ PW YR Sbjct: 72 IDPHCDLYGFCGGCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYR 131 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM-- 186 + ++ + +QMGF GS DIV CPI Q E +AC + Sbjct: 132 NKMQMPVG--GTKGDIQMGFYAMGSHDIVQGTNCPI---QDEGNNIIAQACYQIAKEFDI 186 Query: 187 ----RHLG-----HVELVQATSGTLMIL-RHTAPLSSADR--EKL-ERFSHSEGL----- 228 H G HV SG ++IL T L ++ EKL ER E + Sbjct: 187 EPYDEHTGKGVLRHVIGRIGQSGWMIILVTATEHLPHQEKWVEKLTERVPQVETIVHNVN 246 Query: 229 ----DLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 ++ L P + +L G+ D LR T SP F QVN + +AL + D Sbjct: 247 GKRTNVILGPKNSVL---YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYAD 303 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 ++ + V+D +CG G +L LA +A V+G+E V + ++NAR NG N F + Sbjct: 304 LKGTEIVIDAYCGTGTISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADA 363 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 ++ K A D ++ DP RAG V+ +EP RIVYVSCNPAT+ARD E L Sbjct: 364 AVEIPKLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILT 423 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 GY + + +DMFP T H+E++ L +R K Sbjct: 424 HYGYELKEVQPVDMFPMTAHVEAVALLTRSK 454 >UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDP0_9FIRM Length = 453 Score = 203 bits (517), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 137/451 (30%), Positives = 231/451 (51%), Gaps = 26/451 (5%) Query: 7 AKRRTTTRQ--IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 +RR ++ + T + D G GV RH G F+ LL E+AE+ VT KK Sbjct: 5 GERRMALKKNDVFTAAAVDYTFDGLGVVRHEGLCFFVKDLLKGESAEIGVTAVKKNVGYG 64 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQ---QRSKSAALARLMKH---DVSE 118 +V+RRLS+SP+R PRCP CGGCQ Q +LQ +R + A + + H +V Sbjct: 65 RVIRRLSESPQRIEPRCPVARQCGGCQLQIMEAELQAEFKRHRVADCFQRIGHLDVEVQP 124 Query: 119 VIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 V++ + PW YR + ++ + + + ++ G+ ++ S DIVD +C + + +L +R Sbjct: 125 VLSMEFPWNYRNKVQVPVG-VNRDGKVISGYYRSHSHDIVDFDECCLHSELENQILRSLR 183 Query: 178 ACL---GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFS--HSEGLDLYL 232 + + G +RHL + ++++ + L D E +ER + + + + L Sbjct: 184 SWIEEAGDPAQLRHLLIKHAFKTGQVMVVLIAKSENLKGKD-ELIERLTAAYPQIRSIIL 242 Query: 233 APDSEILETVSGE---MPWYDSN------GLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + + G+ + W ++ GLR S + F Q+N + + +A+E Sbjct: 243 NVNGREDNVILGDREIVLWGSASIEEELLGLRFQISAKSFYQINPVQTEVLYTKAIELAG 302 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + E+ V+D++CG G L A +A V+G+E VP+ VE ++NA NG+ N F + Sbjct: 303 LTGEETVIDVYCGTGTIGLSAARKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGDA 362 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 + + D ++DP R G G + ++K+ P RIVYVSC+PATLARD L Sbjct: 363 GVCTAQLLERRIQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCAVLN 422 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 + GY + + +DMFP T H+E++VL S+V+ Sbjct: 423 ERGYGVEVVQPVDMFPQTTHVETVVLMSKVR 453 >UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clostridiales RepID=D2RLZ0_ACIFE Length = 458 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 135/450 (30%), Positives = 235/450 (52%), Gaps = 37/450 (8%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 ++ I +++ L S G+GV + +G T F+PG LP E + VT KK Y +A++++ L S Sbjct: 11 KENIELTITGLGSSGEGVGKVSGFTFFVPGALPGERIQAQVTLLKKSYGQARLLKLLVPS 70 Query: 74 PERETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARL---MKHDVSEVI-ADVPW 125 P+R P CP + CGGCQ QH A + L++++ A+ R+ K V E + A+ PW Sbjct: 71 PDRVKPPCPVYAQCGGCQLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQETLGAEDPW 130 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ- 184 YR + ++ + L +G G+ ++DVK C I ++ VR+ + + Sbjct: 131 HYRNKMQVPAAQ-GRNHTLAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVRSWMEKYRI 189 Query: 185 ----------AMRH-LGHVELVQATSGTLMI-----LRHTAPLSSADREKLERFS----- 223 +RH +G V + +++ + H L++ R+++ F+ Sbjct: 190 PALEEDARRGIVRHIMGRVGVQTGEVMAVLVTNEPQVPHLKDLTALLRQEIPGFTTLVQN 249 Query: 224 -HSEGLDLYLAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEW 281 ++ ++ + P +++ + G +D G T SP F QVN +K+ AL++ Sbjct: 250 LNTRHTNVIMGPKNKV---IWGPGVIHDRLGKFTFTISPHSFFQVNTLQAEKLYETALQY 306 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 + +++V+D +CG G TL LA +A +G+E V + +QNAR N + NV F Sbjct: 307 AALTGKEKVIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCG 366 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + +++ + + D V+LDP RAG V++ I K+ P R+VYVSCNPA+LARD+ Sbjct: 367 DAAKEMPELVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDAAI 426 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 L G+ + ++ +DMFPHT H+E++ L + Sbjct: 427 LRDKGFVVRKVQPVDMFPHTSHVETVCLLT 456 >UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCA6_9FIRM Length = 455 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 145/449 (32%), Positives = 221/449 (49%), Gaps = 37/449 (8%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q + + ++ L+ G+GV R+ G T+F+P +P + V +K YARA + ++ SP Sbjct: 11 QQVELEIHSLNHDGEGVGRYQGFTIFVPDAVPGDTVNAKVISVQKSYARALLQSVITSSP 70 Query: 75 ERETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADV----PWG 126 R P C H CGGCQ QH + L+Q S L R+ D+ V+A + PW Sbjct: 71 TRIAPSCEHAAQCGGCQLQHLQYEEQLKLKQNIVSDTLKRIGGIDIP-VLATMGMQDPWR 129 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL--- 183 YR +A++ + T ++ GF + S +I+D+K C I P + ++ VR L L Sbjct: 130 YRNKAQVPVGLENGT--VRAGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRNILQQLSVP 187 Query: 184 --QAMRHLGHVELVQA-----TSGTLMILRHTAPLSSADREKLERFSHS--EGLDLYLAP 234 + H G V + A T L+ + +E +++ S + Sbjct: 188 VYREREHKGLVRHILARTSFTTEEVLVAIVTNGRQLPKKQEVVQQLKDSIPNLCGIVQNI 247 Query: 235 DSEILETVSGE-------MPWYDSN--GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 ++ T+ G PW L S R F QVN + + +ALE+ ++ Sbjct: 248 NTRKGNTILGNEELTLLGRPWLREKLGNLHFHVSARSFFQVNPLQTEVLYNKALEYANLS 307 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 + V DL+CG+G +L LA +AA VVGVE V A V ++NA +N ++N F H E Sbjct: 308 GTETVFDLYCGIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEF-HTGTAE 366 Query: 346 DVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 V + + K G+ D V++DP R G ++ I + P RIVYVSCNPATLARD + L Sbjct: 367 TVVPRLF-KQGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLARDLKYLQ 425 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + GY +DMFPHT H+E++VL R Sbjct: 426 QNGYNPIEAQPVDMFPHTSHVETVVLLER 454 >UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDG7_HELMI Length = 490 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 152/484 (31%), Positives = 224/484 (46%), Gaps = 66/484 (13%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I T S+ + G+GVAR G LFIP +P E + +T+ KK +ARA+++ L +PE Sbjct: 6 IDTFSIERMTLQGEGVARPGGMALFIPECMPGERVKARITQVKKNFARAELLEVLEAAPE 65 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAA-------LARLMKHDVSEVI-ADVPWGY 127 R P C F CGGCQ Q Q R K+ L RL V E++ A PW Y Sbjct: 66 RVEPPCRVFSRCGGCQLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVGAANPWRY 125 Query: 128 RRRARLSLNYLPKT--QQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 R R ++ L + LQMG+ + S ++V+ +CP+L +L +R L + Sbjct: 126 RNRVQMHLRREAGAPGKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHLPEIDP 185 Query: 186 MRHLG--HVELVQAT----SGTLMILRHTAPLSSADREKLERFSH--------------- 224 L HV L T +G +M++ + SA R+ + + Sbjct: 186 AGELPIRHVVLKTTTPLERAGEMMLILVFSAWRSAWRKAVGDLAKRLMGEGATGEGATGE 245 Query: 225 -------------SEGL--------DLY-----------LAPDSEILETVSGE--MPWYD 250 EGL LY L PD + G+ + Y Sbjct: 246 GATGEGATGEGATGEGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKERLTDYL 305 Query: 251 SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAAS 310 GL++ P F QVN + + E + + ++D +CG G +L LA A Sbjct: 306 PGGLQIEVGPASFTQVNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLARDCAR 365 Query: 311 VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA- 369 V+G+E VP VE Q+NA NG+ NV F +E+ + D ++LDP R G Sbjct: 366 VIGIEEVPMAVEDAQKNAEQNGITNVEFLTGKVEDLLPSLLERACVPDVIVLDPPRRGCH 425 Query: 370 AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 A V++ I + P RIVYVSC+PA+LARD+ L G+ + ++ +DMFP TGH+E++VL Sbjct: 426 ARVIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVETVVLM 485 Query: 430 SRVK 433 SRVK Sbjct: 486 SRVK 489 >UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacilli RepID=C6CV49_PAESJ Length = 465 Score = 197 bits (500), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 137/460 (29%), Positives = 222/460 (48%), Gaps = 51/460 (11%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + L G+GV R +G TLFI G LP E V + KK Y A++ L S +R Sbjct: 11 VVVDIIGLTHDGEGVGRADGYTLFIQGALPGERVRAKVMKVKKAYGYARLQELLDASADR 70 Query: 77 ETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVS-------------EV 119 P C + CGGCQ QH A ++ +++ AL R+ K ++ V Sbjct: 71 VVPVCGIYDKCGGCQLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASGITVHPTV 130 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 + PW YR +A++ + +L GF GS I+D QC I + + ++ V+A Sbjct: 131 GMNDPWRYRNKAQVPVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEVVRIVKAI 190 Query: 180 LGSLQA-----------MRHL--------GHVELVQATSG------TLMILRHTAPLSSA 214 L +RH+ G + +V T+G L + R A L Sbjct: 191 GRELGVSAYDEESGKGLLRHVMTRTGFVSGEIMVVLVTNGRKLPQAELWVERIRAALPEV 250 Query: 215 DREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKM 274 + + + ++ ++ ++++L E+ + + +G+R S R F QVN ++ Sbjct: 251 --KSIVQNVNTRDTNVIFGDETKVLW--GSEVIYDELDGIRFAISARSFYQVNPSQTIEL 306 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 A+++ + ++ V+D +CG+G +L LA +A V GVE VP +E ++NA LNG+ Sbjct: 307 YRTAVDYAQLTGKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGIS 366 Query: 335 NVTFYHENLEEDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNP 391 N +F E +V W + G D +++DP R G ++ I+K++P R+VYVSCNP Sbjct: 367 NASF--EAGPAEVVIPRWREEGIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCNP 424 Query: 392 ATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +TLARD L GY + +DMFP T H+E +V R Sbjct: 425 STLARDLRTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVR 464 >UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FPA8_DESHD Length = 446 Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 138/443 (31%), Positives = 220/443 (49%), Gaps = 36/443 (8%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 K+ T + IT+ L S G GV H GK F+ GLLP E ++ + E+KK + R +++ Sbjct: 13 KKSADTHRPITIECLRLSSDGSGVGYHEGKATFVSGLLPGETGQIRIVEEKKNWQRGQLL 72 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIA-- 121 S ER P C FG CGGCQ QH ++ ++R AL R+ K + +V Sbjct: 73 SLCKTSAERIEPPCSVFGRCGGCQLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHP 132 Query: 122 ----DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 D PW YR +ARL + + +G+ + S V C +++ + + + Sbjct: 133 TLGMDEPWRYRNKARLH-----RGEGNTLGYYQEKSKATVPFTDCLLISESMNRWVREAE 187 Query: 178 ACLGSLQA--MRHLGHVELVQATSGT-LMILRHTAPLSSAD-REKLERFSHS-EGLDLYL 232 A LG L + + + G ++IL + AD ++ +HS G++ Sbjct: 188 AILGQQDKNLFPDLNALTFRENSQGEGMLILDSLKDVRQADVWSEMGGGTHSVWGINSSG 247 Query: 233 APDSEILETVSGEMPWY-DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 P E ++G+ + D G R SP F+QVN +K+ + L+W ++ E V Sbjct: 248 EP-----ERIAGQKEFTEDVLGARFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEKVVW 302 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY---HENLEEDVT 348 DL+CG+G TL LA +A V G+E P VE ++NA+ N + NV F E+ + + Sbjct: 303 DLYCGIGTITLALAAKAKKVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQQIG 362 Query: 349 KQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 P V+LDP RAGA V++ +++L+P +I+YVSC+ TLARD L GY Sbjct: 363 DYP------HIVVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYR 416 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 + + +DMFP T +ES+++ + Sbjct: 417 VVEVQPVDMFPWTVSVESIIVMT 439 >UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD26_CARHZ Length = 441 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 139/440 (31%), Positives = 217/440 (49%), Gaps = 39/440 (8%) Query: 23 DLDSFGQGVARHNGKTLFIPG-LLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRC 81 DL G GV + + F+ G + + +V VT +K+ + + L++SP R+ PRC Sbjct: 9 DLTEEGLGVGKKEKRVYFVSGDVTVGDVVKVKVTSEKRGVILGEALEILTNSPYRDVPRC 68 Query: 82 PHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIADVPWGYRRRARLSL 135 PHFG CGGC Q+ + Q K + +MK ++ V+ + + YR R ++ Sbjct: 69 PHFGYCGGCSLQNLDYEQQLVLKKTKVYNIMKKIGRIDAPINSVLPNFAF-YRYRQKVHF 127 Query: 136 NYLPKTQQLQMGF--RKAGSSDIVD--------VKQCPILAPQLEALLPKVRACLGSLQA 185 + +L +G+ RK + D V+ + L+A K++A Sbjct: 128 TFGSSQNKLAIGYFDRKNNWFPVTDCLIADKSLVEVAHYVTEILDAF--KLKAYFNDAGV 185 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADRE---KLERFSHSEGLDLYLAPDSEILETV 242 +RHL V +T+G + ++ L+ +E K+ + L + P Sbjct: 186 LRHL--VVRKSSTTGEIQVVITAVKLNFNVKEIAAKILLNPEIQSLTFHENPKKTREVFG 243 Query: 243 SGEMPWYDSN-------GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 G + + G+ +P F Q+N +K+ AL++LD+ D V D + Sbjct: 244 KGTAVTFGTRYITEELLGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGYS 303 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW-AK 354 G+G+ TLP A AASVVGVE + VE + NA+LNG+ NV F+ +EE K PW K Sbjct: 304 GVGSLTLPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEE---KLPWLLK 360 Query: 355 NG--FDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 G F+K++LDP R G V+++IIKL P RIVYVSCNPAT ARD + L + GY + Sbjct: 361 KGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYPVEI 420 Query: 412 AMLDMFPHTGHLESMVLFSR 431 +DMF T H+E++VL + Sbjct: 421 TPVDMFSQTMHVENVVLLKK 440 >UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8Z2_9FIRM Length = 455 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 135/432 (31%), Positives = 223/432 (51%), Gaps = 37/432 (8%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G GV + +G LF+ G+ E E+ VT+ +K + K+ R + S R P CP C Sbjct: 32 GHGVVKIDGFPLFVKGMCEHEEGEIIVTQVRKGFGFGKLWRLMKKSEARVEPFCPVAKQC 91 Query: 88 GGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIA-DVPWGYRRRARLSLNYLPK 140 GGCQ QH S Q R K + +MK +V +VI + P YR + ++ + K Sbjct: 92 GGCQLQHVSYAEQLRFKKQKVIDVMKRIAQIDVEVLDVIGMENPTFYRNKGQIPVGITNK 151 Query: 141 TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQA-TS 199 Q+ GF + S+ I+D+ C I + ++ +L ++ L Q H+ + A S Sbjct: 152 --QVVTGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLLNKYQNADLFRHLLIKDAFAS 209 Query: 200 GTLMI--LRHTAPLSSAD---REKLERFSHSEG--LDLYLAPDSEIL----ETVSGEMPW 248 G +M+ + ++ LS + +E +E + + +++ D+ IL + G Sbjct: 210 GEVMVVWIVRSSKLSHKEEMCKELVENLPYIKSVIINVNTREDNVILGKEEHVLYGNSYI 269 Query: 249 YDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ 307 D+ + L S R F QVN +++ +ALE+ + ++ V+DL+CG+G ++ LA + Sbjct: 270 TDAIHDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEVIDLYCGVGTISMFLAQK 329 Query: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTF-------YHENLEEDVTKQPWAKNGFDKV 360 A V+GVE V A + + NA+LN + N+ F Y + LE+ K+P D V Sbjct: 330 AKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKLEKQ-GKKP------DVV 382 Query: 361 LLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 ++DP R G + + I+K++P RIVYVSC+PATLARD + L + GY + +DMFP Sbjct: 383 VVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQVVQPVDMFPF 442 Query: 420 TGHLESMVLFSR 431 + H+ES+VL + Sbjct: 443 SFHVESIVLLQK 454 >UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4G9_9CHLA Length = 449 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 135/448 (30%), Positives = 209/448 (46%), Gaps = 44/448 (9%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 Q I + + L SFG+GV + G T F+ G LP E + +TE KK Y R K+++ L+ S Sbjct: 6 HQQIDLFIRSLGSFGEGVGSYEGLTFFVEGALPDETVSIQITELKKNYGRGKLLKILTPS 65 Query: 74 PERETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARL--MKHDVSEVIADVPWGY 127 P+R TP CP F CGGCQ H ++++++ AL R+ +K+ + P Sbjct: 66 PDRATPPCPIFRQCGGCQLMHLGYPKQLEMKRQIVLNALERIGHLKNISIDPCVSSPQEL 125 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ--- 184 R ++ L + K L +G S I+ V C I Q E + V L Sbjct: 126 EYRNKIQLPVMMKPDGLTVGLYARNSHTIIPVDHCLIHCEQGENVYQSVLKLLKQSDIAP 185 Query: 185 --------AMRHLGHVELVQATSGTLMIL----RHTAPLSSADREKLERFSHSEGL--DL 230 +RHL +Q TS +L+IL L + ++ ++ +G+ ++ Sbjct: 186 YDERTGKGVLRHLLIKSALQ-TSESLVILVTSQEKCTSLQALAQQIMQACPEVKGVIQNI 244 Query: 231 YLAPDSEILETVSGEMPWYDSNGL----------RLTFSPRDFIQVNAGVNQKMVARALE 280 D+ IL T W+ G SP F QVN + + L Sbjct: 245 NRKRDNVILGT-----DWHTLAGKSYIREMICDHHFHISPSAFFQVNPAQAESIYQHVLS 299 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 D+ LD FCG+G TL A QA +G+E VP +E NA+LN + N FY Sbjct: 300 LADLDKTKTFLDAFCGVGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYC 359 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSE 399 ++ E + + D V L+P R G ++ ++ ++P I+Y+SC+PATLARD + Sbjct: 360 DHAESKI----QSLKDIDVVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLK 415 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMV 427 L++ GY I ++ DMFP T H+E++V Sbjct: 416 ILVQHGYQIEQVTPFDMFPQTAHVETVV 443 >UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYI0_DESAD Length = 465 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 134/457 (29%), Positives = 219/457 (47%), Gaps = 45/457 (9%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 II + L G+G+ R+ G TLF+ G++P + +T+ KK++A A+ LS E Sbjct: 13 IIETKIESLAFGGKGIGRYEGLTLFVEGVVPGQTVRCEITKLKKRFAEARRTEILSHVEE 72 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP----------- 124 +TP C +FG CGGC Q Q K + ++ + ++ D P Sbjct: 73 EQTPTCEYFGSCGGCLHQDIKYPAQTFWKGRQVCETLER-IGKIGPDTPGMGEEALPSPL 131 Query: 125 -WGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLG- 181 +GYR + S + + L++GF++ GS +D++++ CP+L Q + VR Sbjct: 132 EYGYRNKMEFSFHGI--GDSLKLGFKRRGSETDVLNISSCPLLPEQCADIPALVRDYCAH 189 Query: 182 -SLQAMRHL--GH----VELVQATSGTLMILRHTAPLSSADREK------------LERF 222 ++ A RH G+ V SG +MI T P S K L+ F Sbjct: 190 TNIGAYRHNRGGYWRKLVVRFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDNIPQLKSF 249 Query: 223 SHSEGLDLYLAPDSEILETVSGE------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA 276 HS E L +V+G+ + D + + +P F Q N+ + + Sbjct: 250 VHSTRKGRADLATGERLISVTGQEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYR 309 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 ++ E + +D V DLFCG G + +A ++G+E V+ + NA LNGL+N Sbjct: 310 KSSELAAPKADDVVWDLFCGSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENT 369 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLA 395 + NL + P D V++DP R+G +Q++I+L P +I+Y+SCNP+TLA Sbjct: 370 QYIVGNLASE-KGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLA 428 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 RD+ A ++ Y + R A +DMFPHT H+ES+ L ++ Sbjct: 429 RDA-AKMEGRYKLERFAAVDMFPHTAHVESIALLTKT 464 >UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MPE3_9FIRM Length = 442 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/435 (29%), Positives = 204/435 (46%), Gaps = 19/435 (4%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 V ++ + G +A+ + LFIPGLL E A V +T+ KK YA A+V+ L S +R Sbjct: 8 VVEISGYTTEGFALAKLDSFVLFIPGLLRGEKARVALTKVKKTYAFARVIEILEVSEKRV 67 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-ARLMKH--DVSEV--IADVPWGYRRRAR 132 P C +CGGCQ QH + Q K + ++H D++ + I P R R + Sbjct: 68 KPSCSIARLCGGCQLQHMAYQEQLSLKQEIVQIHFLRHQLDLNRIHPILPSPKQERYRNK 127 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS---LQAMRHL 189 + + K Q+GF + S D+V + C + + + V+ L R+L Sbjct: 128 VQVPIQEKDGLAQLGFYRNHSHDVVVYEDCMVETEESNQITHFVKRFLNQHHLTSNFRYL 187 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLE---RFSHSEGLDLYLAP-------DSEIL 239 + Q +M + P + + LE F + P D I Sbjct: 188 FIRHIHQRNEVMVMPIVREYPFEKSKKLALELVKEFPNITSFSYLKNPKETNVILDGPIF 247 Query: 240 ETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN 299 E + G+ S + F QVN + + +ALE D+ ED V+DL+CG G Sbjct: 248 EVIGPLFLEESLLGMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTVVDLYCGTGT 307 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 359 + A A V+G+E VP ++ + NA+LN N+ F+ + ++ K K D Sbjct: 308 IGILAAKIAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKIVETKESIDV 367 Query: 360 VLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 V++DP R G + +Q I K+EP ++VY+SC+P+TLARD E L G+ + + +D+FP Sbjct: 368 VIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVETVQPVDLFP 427 Query: 419 HTGHLESMVLFSRVK 433 T H+E + L RVK Sbjct: 428 QTVHVECIALIQRVK 442 >UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=5 Tax=Cyanobacteria RepID=Y942_THEEB Length = 449 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 133/447 (29%), Positives = 213/447 (47%), Gaps = 42/447 (9%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 I + ++ L G+GV R + +F+ +P + V +T K+QYA KV+ + S +R Sbjct: 10 IELRIDSLSHTGEGVGRWQDRVVFVADTVPGDRLRVRLTHVKRQYAHGKVLEVVQPSGQR 69 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVI----ADVPWGYR 128 P C CGGCQ Q + Q +K A+AR+ + + A P+GYR Sbjct: 70 VRPNCIVADKCGGCQWQRVAYATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGYR 129 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ---- 184 + L + + G+ + GS +V++ QCP+ P+L LL ++ L Sbjct: 130 NKVTYPLGR--RHGAVVAGYYQKGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPIYRE 187 Query: 185 -----AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLE--------------RFSHS 225 RHLG + + Q T L+ L PL + + E F+H Sbjct: 188 QTHEPGFRHLG-LRIGQRTGEQLITLVLAGPLPAGLAAEAEGWLQRFQGVIGVCVNFNHH 246 Query: 226 EGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 G ++ ++++L W + G+R + F QVN +++V +W+ Sbjct: 247 VGNRIF-GDETQVL--AGRPYLWEEMAGVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPT 303 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 ++R++DL+CG+G +LPLA A V+GVE A V++ NA+ NG+ N F EE Sbjct: 304 GQERLVDLYCGVGTLSLPLAGAVAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEE 363 Query: 346 DVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 + P D ++LDP R G V+ I+ P R++YVSC+PATLARD L Sbjct: 364 WL---PRYDQAVDVLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCST 420 Query: 405 G-YTIARLAMLDMFPHTGHLESMVLFS 430 G Y +A++ LDMFP T H+E++ L + Sbjct: 421 GTYQLAKIQPLDMFPQTAHVETIALLT 447 >UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AW25_HERA2 Length = 423 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 132/428 (30%), Positives = 210/428 (49%), Gaps = 28/428 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD-SPE 75 + +++ L G GV R+ G+ +F+ LP E V +TE + +AR ++ S+ + E Sbjct: 10 LDTTIDGLAQGGDGVGRYAGRPVFVAAALPGEQVRVRLTERRNGWARGVLLEPPSNPAAE 69 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGYR 128 R TP CP + CGGC Q+ ++ Q+++K LA ++ +V+ A PW YR Sbjct: 70 RVTPACPVYQRCGGCDWQYQMIESQRQAKQTILAEQLRFVAQTDHAEVAATAAGEPWHYR 129 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 AR+ ++ ++GF AG IV+ QC I+ P+L A + +++ L L +R Sbjct: 130 SVARVHVD------GQRVGFYAAGGRQIVEFDQCLIIDPRLNATIERLKPLL-PLIGLRE 182 Query: 189 LGHVELVQATSGTL---MILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 + + T GT+ +I + + S R + + G+ + E ++G Sbjct: 183 ISL--RLSTTDGTIHGHLIGQGQSAWRSWARRWMSADATIAGVS---SATREGWMALAGA 237 Query: 246 MPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 Y+ G +RL +P F Q N + ++ + +L + R+LD FCG+G F LPL Sbjct: 238 EYLYEQLGDVRLRIAPTSFFQANVERARAVLQQIECFLPLNNTTRLLDGFCGVGTFLLPL 297 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A G+E PA + Q +A+ N L NVT +E + P K FD ++DP Sbjct: 298 AHNIGHGWGIEEHPAAIRDAQASAKANQLSNVTLKTGKVEAIL---PQLKQQFDLAIVDP 354 Query: 365 ARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 R G + +I +P I YVSC+P TLARD + L GYTI D FP T H+ Sbjct: 355 PRRGVEPAALNALIAAQPTMIAYVSCHPGTLARDIKLLQAGGYTIQHAQPHDFFPQTSHV 414 Query: 424 ESMVLFSR 431 ES+VL S+ Sbjct: 415 ESLVLLSK 422 >UniRef50_C1F225 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F225_ACIC5 Length = 427 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 145/423 (34%), Positives = 203/423 (47%), Gaps = 37/423 (8%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G G+ARH GK +F+ LP E E + DK Y+ A+V L S ER CP++G C Sbjct: 12 GAGLARHEGKAVFVERSLPGELVEAEIVTDKASYSEARVTEVLEPSAERVAAPCPYYGAC 71 Query: 88 GGCQQQHASVDLQQRSKSAAL------ARLMKHDVSEVIADVPWGYRRRARLSLNYLPKT 141 GGCQ QHAS D Q R K+A L ARL +VIA PWGYR R RL + +T Sbjct: 72 GGCQYQHASEDEQLRMKAAILQETLERARLKDLPEIQVIAGEPWGYRNRIRLHV----ET 127 Query: 142 QQLQMGFRKAGSSDIVDVKQCPILAPQL-EALLPKVRACLGSLQAMRHLGHVELVQATSG 200 + +G+R+ S + V++C I AP L A+ V C +L VEL + Sbjct: 128 KPFALGYRREQSHVTLPVEECRIAAPALVRAMQVLVEQCEAALAGWAR--EVELFTDDAT 185 Query: 201 TLMILRHTAPLSSAD-REKL----ERFS----HSEGLDLYLAPD----SEILETVSGEMP 247 L+++ A ++A +E+L ER + G + P + + T G Sbjct: 186 ELLLISVYADAATAKMQERLDALWERLQGALPEAAGCAAFALPAGKGFARRVATAGGPSL 245 Query: 248 WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ 307 Y + GL+ S F QVN + +MVA E + DL+ G+G F L + Sbjct: 246 TYGAGGLQYRVSAGAFFQVNRFLVDRMVAAVCE---ARAGATAWDLYAGVGLFAKALVPR 302 Query: 308 AASVVGVEGVPALVEKGQQN---ARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 V VE P V + N AR+ + F + +E + K D V+ DP Sbjct: 303 FEHVTAVEAAPESVADLRVNAPGARVVAATTLDFLRKAAQEAGKR----KAAPDLVVADP 358 Query: 365 ARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 RAG V + K+ P I YVSC+PATL+RD ALL++GY L +LDMFP T H+ Sbjct: 359 PRAGLGKDVTALLGKIRPRHITYVSCDPATLSRDLFALLQSGYRFRSLHLLDMFPQTFHV 418 Query: 424 ESM 426 E++ Sbjct: 419 ETI 421 >UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01B5 Length = 446 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 135/444 (30%), Positives = 216/444 (48%), Gaps = 38/444 (8%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 V V D+++ G GVA++ G +FIPG +P + A+V + + K YA K++ + S R Sbjct: 9 VEVIDINANGGGVAKYEGMAVFIPGAVPGDVAKVKIIKVAKSYAVGKLLELVEASEHRAE 68 Query: 79 PRCPHFGVCGGCQQQHASVDLQ----QRSKSAALARLMKHDVSEVIADV----PWGYRRR 130 P C + CGGC QH + Q Q+ L R+ K EV+ + P YR + Sbjct: 69 PPCVYAAKCGGCVAQHIKYEFQLKYKQKQVKDCLERIGKIREVEVLPTIAMENPIHYRNK 128 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA----- 185 A+ + + ++Q+GF A S +VD++ C I + A++ +R + Sbjct: 129 AQYPIREV--DGKIQIGFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXKISIYNE 186 Query: 186 ------MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL-----AP 234 RHL + + ++ + L A ++ +ER G+ L A Sbjct: 187 ATHKGLARHLVIRNSINFDEAMVCLVINGKKLPHA-QDLVERLRAIPGITGILLNHNTAK 245 Query: 235 DSEIL----ETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 + IL T+ G D G L S F QVN + + AL + + Sbjct: 246 GNVILAEQTTTLDGRDYIMDKIGELTFKISLLSFFQVNPVQTKVLYDIALGVAALTGSET 305 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 VLD +CG+G +L LA +A VVGVE +P V +NA++NG+ NV F N E+ V Sbjct: 306 VLDAYCGIGTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDVVLG 365 Query: 350 QPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 + FD V++DP R G ++ I+ P ++VY+SC+PATLARD + + + GY + Sbjct: 366 EK-----FDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYENGYVV 420 Query: 409 ARLAMLDMFPHTGHLESMVLFSRV 432 ++ +DMFP+T H+E+ VL SR+ Sbjct: 421 NKVQPVDMFPYTSHVETCVLLSRL 444 >UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BA92_THEAS Length = 457 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 136/455 (29%), Positives = 218/455 (47%), Gaps = 42/455 (9%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 ++ + ++ S G+GV R F+PG L E V++ K+ YAR++++ LS SP+ Sbjct: 7 VLDLDISSTGSSGEGVGRIGDFVTFVPGALSGERVRVSLETVKRTYARSRLLEVLSPSPD 66 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQ----QRSKSAALARLMKHDVSEV----IADVPWGY 127 R P CP FG CGGCQ QHA LQ +R A+ R+ + V ++ + WGY Sbjct: 67 RRDPPCPLFGCCGGCQLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEPCEMSPLQWGY 126 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL--------PKVRAC 179 R +A + + + + MGF + S ++V ++ CP+++ ++ ++ P++R Sbjct: 127 RNKAIVPVR--SQGRGWGMGFYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPRIRGG 184 Query: 180 LGS--LQAMRHLGHVELVQATSG--------TLMILRHTAPLSSADREKLERFSHSEGL- 228 L S + R G + V G +L++ + +D E L R G+ Sbjct: 185 LLSPYREGDRPSGSLREVVVRHGMRTGELLVSLVMRQDPRGRLLSDLEGLFRLLEGLGVV 244 Query: 229 ---------DLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 D D + + + W G+RL++ F QVN ++M + Sbjct: 245 GLSVFRNRRDANFVWDGDFAWGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMFQHVV 304 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 + LD VL+L+ G+G+ T +A VV VE P+ VE ++N ++NG+ VT Sbjct: 305 DLLDETGARDVLELYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPL 364 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDS 398 EDV F V+LDP R G V++ ++ ++YVSCNPATLARD Sbjct: 365 L-GAAEDVLGD--LGGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLARDL 421 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L + GY + R+ DMFP T H+E + L SRVK Sbjct: 422 MLLSQGGYVLRRVRPFDMFPQTCHVECVTLMSRVK 456 >UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bacteria RepID=A9KR80_CLOPH Length = 468 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 231/457 (50%), Gaps = 43/457 (9%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 +++ +++ D+ + G+G+ + +G TLF+ + + V V + KK Y A++ + ++ SP Sbjct: 11 EVVPITIEDIGADGEGIGKVHGFTLFVKDAVVGDELLVKVMKTKKTYGYARIEQIVTPSP 70 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIA-DVPWG 126 R PRC CGGCQ Q S + Q R K + +K + ++ + P+ Sbjct: 71 YRVNPRCEIASKCGGCQIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPMEPIVGMENPYY 130 Query: 127 YRRRARLSLNYLPKTQ-QLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS--- 182 YR +A+ + +T ++ +GF + I+D +C I E L+ +R L Sbjct: 131 YRNKAQFPVG--KRTDGEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQENI 188 Query: 183 --LQAMRHLG---HVEL-VQATSGTLMI--LRHTAPLSSADREKLERFSHSEGL------ 228 H G H+ L V T+ LMI + + L ++D+ +++ L Sbjct: 189 SIYDEESHQGLVRHILLRVGFTTKELMICVVINGKELPASDK-LIKQILACPNLPKDFRV 247 Query: 229 -DLYLAPDSEILETVSGE--MPWY------DSNG-LRLTFSPRDFIQVNAGVNQKMVARA 278 + L +++ + GE +P Y D G ++ SP F QVN +K+ A Sbjct: 248 TSICLNKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELA 307 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 L++ D+ + V DL+CG+G +L LA +A V GVE +P +E + NA+LN + N F Sbjct: 308 LDYTDLTGNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEF 367 Query: 339 YHENLEEDVTKQPWAKNG---FDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATL 394 + EE + KQ G D +++DP R G +++ I+ +EP RIVYVSC+PATL Sbjct: 368 FVGAAEEVLPKQYQLSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPATL 427 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 ARD + L++ GY + ++ +D FPH+ H+ES+ L +R Sbjct: 428 ARDLKYLIEHGYDLKKVRPVDQFPHSVHVESVTLLTR 464 >UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM76_9BACT Length = 454 Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 143/453 (31%), Positives = 221/453 (48%), Gaps = 45/453 (9%) Query: 17 ITVSVNDLDSFGQGVA-RHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 IT++V D++S GQGVA +GK +F+ G LP E V++ DKK Y+ AK++ S Sbjct: 5 ITLTVRDVNSRGQGVAVGEDGKVVFLDGGLPSEVVRVSLETDKKNYSTAKILDIEVPSEH 64 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVI---ADVPWGYR 128 R TPRCP +G+CGGCQ QH S DLQ K+ A+ R+ + V ++ + + WGYR Sbjct: 65 RITPRCPWYGLCGGCQLQHGSYDLQLEIKAKSVRDAMERIGRMRVDRLVCHPSPMQWGYR 124 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEAL--------LPKV-RAC 179 +A + ++GF ++GS + + CP+L P +E L +P++ R Sbjct: 125 NKASFPVR---SENGGEIGFFRSGSHKLAPIDGCPVLMPHVEKLYVDFRDTVMPELKRNG 181 Query: 180 LGSLQAMRHLG---HVELVQATSGTLMILRHTAPLSSA-DREKLER----------FSHS 225 + RH G H+ G+L+ L L +E LER S S Sbjct: 182 VPFYDERRHKGLLRHMVFRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQTSFS 241 Query: 226 EGLDLYLAPDSEILETVSGEMPWYDS------NGLRLTFSPRDFIQVNAGVNQKMVARAL 279 + + + IL S + W D + L++ F QVN +++ RA Sbjct: 242 GVWNENSSRGNRILGERSSTI-WGDGVITEKISNYDLSYDGTAFFQVNPFQAERLFLRAS 300 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 + + V++L+ G+G T+ LA A +V+ VE +E+ +N NGL NV Sbjct: 301 S-IVAERGGAVVELYAGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGI 359 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDS 398 E+ V AK D +++DP R G A V+ + + +VYVSCNP+TLARD Sbjct: 360 CNRAEDTVRTMVEAKP--DVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTLARDG 417 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+ G+ +A L D+FP T H+E++ F R Sbjct: 418 AKLVSDGWELATLECFDLFPQTVHVETLASFKR 450 >UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1776 n=56 Tax=Firmicutes RepID=Y1776_LISMF Length = 453 Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 135/448 (30%), Positives = 218/448 (48%), Gaps = 40/448 (8%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q I +++ DL G GV + +G LFIP LP E + + K Y A++ + S Sbjct: 10 QSIELTIEDLTHDGSGVGKIDGYPLFIPNTLPGEKVTAKIIKLNKNYGFARMENIETVSA 69 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIA-DVPWGY 127 +R P C + CGGC QH S D Q K + MK +V E + + PW Y Sbjct: 70 DRVEPPCAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRY 129 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA-- 185 R ++++ + ++ +L GF + S I+D+ C I Q + + K R L Sbjct: 130 RNKSQVPVGFV--NGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEP 187 Query: 186 ---------MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY----- 231 +RH+ + T+G LMI+ T +E++ R E L+L Sbjct: 188 YDEQTGKGDIRHI--MTRFAHTTGQLMIVLVTTKERMPFKEEIVR-ELVEQLELTSIVQN 244 Query: 232 LAPD------SEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + P + +T+ G+ D+ +G+R S R F QVN + + +A++ ++ Sbjct: 245 INPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDAAEL 304 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 E+ V+D +CG+G+ +L LA +A V GVE V ++ + NA LN L N TF E Sbjct: 305 TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAE 364 Query: 345 EDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E + W K G D +++DP R G +++ I+ ++P ++VYVSCNP TLARD + L Sbjct: 365 EVIP--AWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKIL 422 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLF 429 GY ++ +DMFP T H+E++ + Sbjct: 423 TDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8C0_9BACT Length = 541 Score = 187 bits (474), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 143/449 (31%), Positives = 216/449 (48%), Gaps = 44/449 (9%) Query: 21 VNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETP 79 ++ ++S GQG+ R +G+T+F+ G LP E A + V ++KK Y +A+V R + +PER P Sbjct: 6 IDRMNSAGQGIGRAADGRTVFVEGALPGETAVIAVRQEKKSYIQARVERVVEANPERREP 65 Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADVP----WGYRRRA 131 C + CGGCQ QHA LQ + K+ AL R+ ++ I VP W YR +A Sbjct: 66 SCRWYRSCGGCQLQHAEYTLQCQIKAMLAADALRRIGGFEIDGEIPCVPSRNEWRYRNKA 125 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR--------ACLGSL 183 S + + +GF K GS +IV V +CP++ + L V+ C Sbjct: 126 --SFPVRARGRAGDVGFFKRGSHEIVPVDRCPVICDRANKLYAVVKNMINYGRFCCYDEK 183 Query: 184 QAMRHLGHVELVQATSGT--LMILRHTAPLSSADREKL--------ERFSHSEGLDLYLA 233 L HV + A G L+IL A E L ERF GL + + Sbjct: 184 SNSGWLRHVVIRSARDGEELLLILVAAARPEGGALESLERLYDHLKERFPELRGLVVNVN 243 Query: 234 PDSEILET------VSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQP 286 PD + V GE + G RL + F Q N G +++ A A + Q Sbjct: 244 PDEGNVIIGAESVLVKGEDRLTERLGNFRLDYDGTSFFQANPGQAEQLFAYAASLAEGQ- 302 Query: 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 +L+L+CG+G T L+ +A ++ VE + V ++N N ++ +T E Sbjct: 303 --NLLELYCGVGALTAFLSRKAKTIRAVEVWASAVALARENGESNRIEGLTVLQGAAENV 360 Query: 347 VTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPI-RIVYVSCNPATLARDSEALLKAG 405 V P G D V++DP RAG + + I + R++Y+SCNPATLARD+ L AG Sbjct: 361 VA--PADLEGIDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCNPATLARDAALLRDAG 418 Query: 406 YTI--ARLAMLDMFPHTGHLESMVLFSRV 432 Y + L + DMFP T H+E++ L S++ Sbjct: 419 YVLDMDSLKVFDMFPQTCHVETVCLLSKL 447 >UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=23 Tax=Firmicutes RepID=Y768_OCEIH Length = 459 Score = 187 bits (474), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 220/449 (48%), Gaps = 45/449 (10%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 +I T++ DL G GVA+ G LF+P +LP E A+V V + K + K++ S Sbjct: 11 NEIYTLTFEDLTHEGNGVAKIEGYPLFVPEVLPDEQAKVKVVKVNKNFGFGKLLELTKTS 70 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIA-DVPW 125 R P C H CGGCQ QH S DLQ + K + +MK V ++ + P Sbjct: 71 SHRVEPTC-HVH-CGGCQLQHMSYDLQLQMKQGQVHNVMKKVAHLDQVPVHPILGMEEPS 128 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIV-DVKQCPILAPQLEALLPKVRACLGS-- 182 YR + ++ + K ++ +GF + S I+ + C I + +LP R + Sbjct: 129 HYRNKVQIPVG--EKNGEVIVGFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMNKYG 186 Query: 183 LQAM---RHLGHVELVQATSG------TLMILRHTAPLSSADR---EKLERFSHSEGL-- 228 +QA H G + + G ++ + T+ DR E E+F + + Sbjct: 187 IQAYDEKSHRGQLRHIMVRVGHYTKDIMIVFVTKTSKFPEKDRIIKELTEQFPQVKSIVQ 246 Query: 229 -------DLYLAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALE 280 ++ L +++L GE YD G L SP+ F QVN + + +ALE Sbjct: 247 NVNDQRTNVVLGKKTKVL---WGENYIYDKIGDLTFAISPKSFFQVNPVQTKVLYDKALE 303 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + ++ +D V+D +CG+G+ +L LA +A V G+E VP +E + NA +NG+ NV F Sbjct: 304 YANIDKDDVVIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSV 363 Query: 341 ENLEEDVTKQPWAKNGFDK--VLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARD 397 E+ + K W + G D +++DP R G ++ +I ++P RIVYVSCNP+TLARD Sbjct: 364 GQAEKVMPK--WKEQGLDPDVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLARD 421 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESM 426 L G+ ++ +DMFP T H+E + Sbjct: 422 LRILEDGGFETKQVQPVDMFPSTNHVECV 450 >UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1I4_HALOH Length = 453 Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 133/446 (29%), Positives = 218/446 (48%), Gaps = 39/446 (8%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 +I + ++ L G+ + R+ G +F+P +P E V + E KK YAR ++ L+ +PE Sbjct: 7 LIELKLDTLGHGGEAIGRYRGLVVFVPEGIPGEKVRVKIKERKKNYARGEIKEILTPAPE 66 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQ----QRSKSAALARLMKHD---VSEVI-ADVPWGY 127 R+ P C FG+CGGC Q LQ Q+ L R+ + V+EVI AD PW Y Sbjct: 67 RKEPECEVFGLCGGCHLQQMDYSLQLLHKQKIVKDTLERIGGFEEVRVNEVIGADHPWIY 126 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ--- 184 R +A+ L ++ GF + G+ +V +QC I P + + K + L + Sbjct: 127 RNKAQFPLGS-DNEGRVITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNNYDLTV 185 Query: 185 --------AMRHLGHVELVQATSGTLMIL----RHTAPLSSADREKLERFSHSEGLDLYL 232 +RHL V + T+ L+I + L R+ + +G+ + Sbjct: 186 YDEKTHTGLLRHL-VVRVGICTNQALLIFVTRDKKFKELQEIARKLMTEIPELKGVLQNI 244 Query: 233 AP--------DSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 P D +L + G + D G +R SP F QVN +++ ++ Sbjct: 245 NPRRTNVIMGDKTLL--IKGNDYYIDYIGSIRYAISPHSFFQVNTLQTERLYNTVRKYAG 302 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + ++ V+D +CG G+ + LA +A +V G+E V + +E ++NA LNG+ N F + Sbjct: 303 LSGQETVVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKV 362 Query: 344 EEDVTKQPWAKN-GFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E+ + + K D ++ DP R G M ++++ P +IVYVSCNPATLARD + Sbjct: 363 EDKLPELVDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLKE- 421 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMV 427 +KA Y I + +D+FP T H+E +V Sbjct: 422 IKACYDINEVQPVDLFPQTYHVECVV 447 >UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6H3_COPPD Length = 438 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 215/447 (48%), Gaps = 45/447 (10%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLL-PQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + + DL G GVA+ +G F+ G++ P + + +T + Y A+ V + SP R Sbjct: 4 LEITDLTVEGFGVAKSSGLVYFVKGVVAPGDVVKAVITSQHRNYVEAEFVELVQPSPYRI 63 Query: 78 TPRCPHFGVCGGCQQQHASVD--LQQRSKSAA-----LARLMKHDVSEVIADVPWGYRRR 130 P CPHF CGGCQ QH S LQ +S A+ LAR +V V +D+ +GYR + Sbjct: 64 EPLCPHFSQCGGCQLQHISYQEQLQWKSNFASQNLWKLAREKVDNVHIVPSDLLYGYRAK 123 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 A + + L +G+ + S + CPIL L V + L + Sbjct: 124 AHFTFG--EENNILNIGYF-SKSDKWFALTTCPILKETLWVTAQDVLSVLRKHDLKSYF- 179 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSH-------------SEGLD-LYLAPDS 236 ++GTL L+ L + +++ L F+ S G+ L L ++ Sbjct: 180 ------TSNGTLRHLQVRVSLLTGEKQVLVTFTQFPKNFENVAEEILSAGISSLALHQNT 233 Query: 237 EILETVSGE-MPWYDSN--------GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 +TV G+ Y+ N G +P F Q+N +K+ + AL++L+ QPE Sbjct: 234 AQNKTVIGKGATLYNGNQYVQEQLMGKVYNITPVSFFQINPVQAEKLFSIALDYLEPQPE 293 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 D V + + G+G FTL A + +V+ EGV V++ +NA LN + NV F + +EE Sbjct: 294 DIVFEGYSGVGAFTLLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAA 353 Query: 348 TKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGY 406 + +KV++DP R G + + +L+P RIVY+SC+P+TLARD GY Sbjct: 354 GS---LQQKINKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGY 410 Query: 407 TIARLAMLDMFPHTGHLESMVLFSRVK 433 ++ + +DMFP T H+E + L + K Sbjct: 411 SLNHIQAIDMFPQTTHVECVALLIKEK 437 >UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR7_9FIRM Length = 458 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 134/445 (30%), Positives = 212/445 (47%), Gaps = 52/445 (11%) Query: 24 LDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR-----RLSDSPERET 78 LD+ G+G+ + + + I LLP E E+ +Y R + VR RL+DSP R Sbjct: 26 LDASGKGLVKIKDEKVLIENLLPGEEVEL-------EYTRGRGVRVVSAVRLTDSPLRVK 78 Query: 79 PRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMK-HDVSEVIADVPWGYRRRARL 133 PRC F CGGCQ QH A +D ++ L R + HDV + PW YR + Sbjct: 79 PRCRVFDRCGGCQLQHVDYPAQLDWKKEKVQQLLGRYGRVHDVLGMAE--PWAYRNKVIA 136 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA-------- 185 + + L K ++ G + S +V C I P E +L V + L+ Sbjct: 137 TFS-LSKKGKVIAGIYEEDSHQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQR 195 Query: 186 ---MRH----LGHVELVQATSGTLMILRHTAPLSSADREKLERFS--HSEGLDLYLAPDS 236 +RH +GHV + L+ L +P+ A ++ ++R H E + + +S Sbjct: 196 TGLVRHCLIRVGHV-----SREVLVCLVCASPIFPARKQLIQRLRQRHPEITTIVMNVNS 250 Query: 237 EILETVSGEMPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 V G + GL+ + + + F Q+N+ + + +A+E ++ + Sbjct: 251 RNTSVVLGSQERVLVGTGKIQDELCGLKFSIAAKSFYQINSVQTEVLYGKAMELANLTGK 310 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 +RVLD +CG+G+ +L A A VVGVE P V +NAR+N L+N F + + Sbjct: 311 ERVLDAYCGIGSISLVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFM 370 Query: 348 TKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGY 406 + +D V +DP RAGA ++ + +L P RIVY+SCNP+T ARD L GY Sbjct: 371 EQAAREGQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGY 430 Query: 407 TIARLAMLDMFPHTGHLESMVLFSR 431 + + +D+FP T H+E++VL R Sbjct: 431 QVRTIVPVDLFPMTSHVETIVLLQR 455 >UniRef50_A4BBK4 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBK4_9GAMM Length = 414 Score = 184 bits (467), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 130/440 (29%), Positives = 217/440 (49%), Gaps = 40/440 (9%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 + +K ++ + +++ L G+G+ +G+ + + LP E E + + + + Sbjct: 4 FQSKPKSRIPSTVELTIERLSHDGRGIGHVDGRVVMVDNALPGEVIEAGIDQGNTRLWQG 63 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA------RLMKHDVSE 118 V R LS S +R+ P C +G CGGCQ QH S Q K A+ RL ++ Sbjct: 64 HVRRYLSVSEQRQEPVCHLYGQCGGCQLQHLSATDQLALKQQAVQDHFHRNRLPAIGFTD 123 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR- 177 + P GYR RAR L ++ +GF A ++ V+QCP++ +L+ALL +VR Sbjct: 124 PLVSAPVGYRHRARFHL-----SKSGTLGFHGARGRQVIPVEQCPVITTELQALLDRVRR 178 Query: 178 -ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS 236 A L LQ + EL +G S + R+ E++ +++ Sbjct: 179 EAPLKGLQQL------ELTVDDAGKAGA--RAVKASDSARQAFEQWQNAQ---------- 220 Query: 237 EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + ++ E+ Y + +T P DF QVN +NQ+M+ + +WL + +DR+LDLFCG Sbjct: 221 ---DWLTEELT-YQAGTQVVTARPGDFTQVNREINQQMLKQIRQWLQPREDDRLLDLFCG 276 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV--TKQPWAK 354 GN +L + + A+++G+E +E + A + F +L + A+ Sbjct: 277 NGNISLAMLDEVAAILGLESSGPAIEAAK--AAVKHHPKAQFLEADLFTSCLQVRPQVAE 334 Query: 355 NGFDKVLLDPARAGAAGVMQQIIKLEPI-RIVYVSCNPATLARDSEALLKAGYTIARLAM 413 +LDP RAGA V+Q + +L + R+VYVSC+PATLARD L + + + + Sbjct: 335 FAPTIAVLDPPRAGAEQVVQWLSELPSLTRLVYVSCDPATLARDLAQLTADHWHLRKAGL 394 Query: 414 LDMFPHTGHLESMVLFSRVK 433 +DMFP T H+E+MVL + K Sbjct: 395 IDMFPQTRHIETMVLLKKNK 414 >UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacteria RepID=A4XGR8_CALS8 Length = 452 Score = 184 bits (466), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 225/451 (49%), Gaps = 46/451 (10%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 V ++ L+ QG+AR +G +F+ +L E ++ + E KK+YA+A ++ L SP R+ Sbjct: 10 VKIDTLNHQAQGIARIDGFVVFVDNVLIDEVVKIKIEEVKKEYAKANLIEILEKSPYRKE 69 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADV-----PWGYRR 129 P CP++ +CGGC HA Q + K A R+ K +S I DV P+ YR Sbjct: 70 PECPYYYLCGGCHLMHAKYQHQLKLKKLLVEDAFRRIGK--LSPRINDVIGMENPFRYRN 127 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ----- 184 + L + ++ Q+GF + + DIVD+ C I + ++ ++ + + Sbjct: 128 KTALPVG--GDYKKPQIGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKHKIEVYD 185 Query: 185 ------AMRHLGHVELVQATSGTLMILRHTA---PLSSADREKLERFSHSEGLDLYLAP- 234 +RH+ V A ++IL T L + ++ L FS + L L L P Sbjct: 186 EKKHKGVLRHIV-VRNSFAFDEMMIILVCTKVPENLETIKKDILNNFSKIKSLYLNLNPK 244 Query: 235 -------DSEILETVSGEMPWYDSNGLRLTF--SPRDFIQVNAGVNQKMVARALEWLDVQ 285 D +IL + G D G LTF SP+ F QVN+ + + ++ +++L Sbjct: 245 RTNVILGDEDIL--IWGSSTIKDRIG-NLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNI 301 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 + V D++ G+G ++ +A V +E V VE +++++ NG+ N+ F E Sbjct: 302 DAEIVFDVYSGIGTISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRAEI 361 Query: 346 DVTKQPWAKNGF--DKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 ++ K KNG V+LDP R+G +++ +I+ + I+YVSCNP+TLARDS L Sbjct: 362 EIPK--LLKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILF 419 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 GY I + +DMFP T H+E +VL + VK Sbjct: 420 SNGYEILEVQPVDMFPQTFHVECVVLMTNVK 450 >UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD9_9CLOT Length = 460 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 218/451 (48%), Gaps = 39/451 (8%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 +I + + + G GV R +G +F+PG + +V + + K YA K+ + S Sbjct: 8 EIAVIEITGYTAEGNGVGRLDGMAVFVPGAAVGDTLQVRIVKILKNYAFGKIEELVVPSK 67 Query: 75 ERETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHD---VSEVIADVPWG- 126 +R P CP F CGGC +H A ++ ++R A+ R+ D V V+ Sbjct: 68 DRIIPDCPCFSQCGGCSFRHISYKAELEAKRRRVEDAIQRIGGFDRFPVPPVVGAAKINR 127 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR +A+L + + + MGF S IV ++ CP+ + V+ + + Sbjct: 128 YRNKAQLPIGADRDGRGI-MGFYALHSHRIVPIEDCPLQPKMFAQAVASVKQWMEEYKVP 186 Query: 187 RH--------LGHVELVQAT-SGTLMI--------LRHTAPLSSADREKLERF------S 223 + L H+ L +A+ +G LM+ L H+ L RE L S Sbjct: 187 VYHEESHSGLLRHLYLREASATGALMVCLVGNGDELPHSGELVKRLREDLPCLESVVFNS 246 Query: 224 HSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + E ++ L + L G + GL SP F QVN + + A E+ Sbjct: 247 NREKTNVILGKRCQALWGKDGIVDHL--CGLSFFLSPLSFYQVNRDQAEILYRLAGEYAS 304 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 +Q ED VLDL+CG G + +A++A V+GVE VP +E + NA NG++N+ F + Sbjct: 305 LQKEDTVLDLYCGTGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDS 364 Query: 344 EEDVTKQPWAKNGFDK--VLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + V Q K G V++DP R G V++ I+++ P +I+YVSC+PATLARD + Sbjct: 365 AQAV--QMLRKRGERPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLKL 422 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+KAGY + LA +D+FP T H+E++ L + Sbjct: 423 LVKAGYCLQTLAPVDLFPRTAHVETVALLEK 453 >UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9N7_9PORP Length = 493 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 149/484 (30%), Positives = 224/484 (46%), Gaps = 63/484 (13%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKV 66 A++R R + V + + + GQ VA K LF+P P + + V K+ Y + Sbjct: 2 ARKRKEPRYLDDVLIERMGAEGQCVAHVEDKVLFVPYAAPGDRCRIRVGRSKRSYMLGTI 61 Query: 67 VRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARL----MKHDVSE 118 L SP R PRC FG CGGC+ Q D Q R KS A+ R+ ++H Sbjct: 62 EELLEPSPLRVEPRCEVFGACGGCKWQQLPYDEQLRGKSQQAADAMTRIGHIAIEHTEPI 121 Query: 119 VIADVPWGYRRRARLS-----------LNYLPKTQQLQ----MGFRKAGSSD-IVDVK-- 160 V + PW YR + + L LP+ Q +GF KAG D ++D+ Sbjct: 122 VGCEDPWHYRNKVEFTFSKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHGV 181 Query: 161 QCPILAPQLEALLPKVR-ACLGSLQ------------AMRHLGHVELVQATS-GTLMILR 206 C I P + + CL + MR L L++ T+ G LM+L Sbjct: 182 TCQIADPIASEIRDYLNDYCLARWEEYPYYDQRAHEGVMRTL----LIRTTTLGGLMVLI 237 Query: 207 HTAPLSSADREKL-----ERFSHSEGLDLYLAPDSEILETVS-------GEMPWYDSN-- 252 A + R +L ERF L Y +++ ++++ P+ + N Sbjct: 238 AFAEGTEELRVQLLEALRERFPQITSL--YYMVNTKFNDSLADLPAQLYSGAPYIEENMH 295 Query: 253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVV 312 GLR P+ F Q N+ +++ + E+ ++ ++ V DL+ G G LA SV+ Sbjct: 296 GLRYRIGPKSFYQTNSRQAERLYEKVREYAQLKGDEVVYDLYTGAGTIANYLAQSCRSVI 355 Query: 313 GVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL-DPARAGA-A 370 G+E VP VE N NG+ N TFY +++ +T A +G VL+ DP RAG A Sbjct: 356 GIEYVPEAVEDAFVNRDQNGITNATFYAGDMKAILTDDFVAAHGRPDVLVTDPPRAGMDA 415 Query: 371 GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLF 429 V++ I++ P RIVYVSCNPAT ARD L+ G Y + +DMFPHT H+E++ L Sbjct: 416 PVVEVILRAAPQRIVYVSCNPATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALL 475 Query: 430 SRVK 433 S++ Sbjct: 476 SKLN 479 >UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRD2_9SYNE Length = 483 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 135/453 (29%), Positives = 218/453 (48%), Gaps = 49/453 (10%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + + V++ DL + G GV R + +F+P P + V +T+ K + K +S SP Sbjct: 40 ETLKVTITDLSNSGDGVGRWEDRVVFVPNTAPGDEMLVKLTKAKPTHGFGKPAGIVSPSP 99 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEV----IADVPWG 126 +R P C CGGCQ Q + + Q +K ALAR+ K V A+ G Sbjct: 100 KRVRPACIVADKCGGCQWQQVNYEEQLAAKHRLVVDALARIGKLSNVRVDPVLAAEEQLG 159 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ-- 184 YR +A L P T+ ++ G+ + GS +V++ QCP+ +L+ LL V+ + + + Sbjct: 160 YRNKATYPLGLSP-TKDVKAGYYQKGSHRLVNLNQCPVQDERLDPLLAAVKKDIQAREWK 218 Query: 185 ---AMRHLGHVELVQATSG-------TLMILRHTA--PLSSADREKLERFSHSEGL---- 228 H GH++ + G ++ R T + ++ +ER+ G+ Sbjct: 219 IYDERSHKGHIKHLALRIGRRTGQILVTLVSRSTKLKGIHEQAQQWMERYPEVVGVLVNL 278 Query: 229 -----DLYLAPDSEILETVSGEMPWYDSNGLRLTF--SPRDFIQVNAGVNQKMVARALEW 281 + P++ ++ S + + LTF P F QVN ++++ Sbjct: 279 NWKKTNAIFGPETFLIAGSS----YLEEKFANLTFHIQPATFFQVNTTQAERLLDEIQTE 334 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 L + ++ ++D +CG+G FTLPLA Q +G+E V + Q+NA LNG++NV F Sbjct: 335 LALTGDEVIVDAYCGVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENVGFRIG 394 Query: 342 N---LEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARD 397 + L D+ +P D +LLDP R G V++ I+ ++P RIVYVSCNPATLARD Sbjct: 395 DVAALLPDLDVKP------DILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARD 448 Query: 398 SEALLK-AGYTIARLAMLDMFPHTGHLESMVLF 429 L + GY + R+ D FP T H+E V Sbjct: 449 LRVLSETGGYRVTRVQPADFFPQTAHVECAVFL 481 >UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=64 Tax=Staphylococcus RepID=Y1582_STAES Length = 456 Score = 181 bits (460), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 132/461 (28%), Positives = 220/461 (47%), Gaps = 60/461 (13%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 ++ T V DL G GV + + +FIP L E + + + KK +A K++ +S+S Sbjct: 8 EVKTGKVIDLTHEGHGVVKVDRYPIFIPNALIDEEIKFKLIKVKKNFAIGKLIEVISESD 67 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD-------VSEVIADV-PWG 126 +R TP C ++ CGGCQ QH + Q K + L + E I V PW Sbjct: 68 DRVTPPCIYYAKCGGCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWR 127 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA- 185 YR ++++ + + Q+ MGF + S DI+D+ C I Q + ++ +V+ L L Sbjct: 128 YRNKSQIPVGQ-SNSNQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNIS 186 Query: 186 ----------MRHL--------GHVELVQATSGT------LMI--LRHTAPLSSADREKL 219 +RHL + ++ T+G L++ L+ P ++ ++ + Sbjct: 187 IYNEKTKTGLIRHLVVRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNI 246 Query: 220 ERFSHS------EGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQK 273 SHS + + LY + +E E+ ++ S F Q+N+ +K Sbjct: 247 NN-SHSNVIMGRQSMTLY---GKDKIEDQLSEVTYH--------ISDLSFYQINSSQTEK 294 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + +AL + + ++ VLD +CG+G L +A A V GVE VP ++ + NA N L Sbjct: 295 LYQQALNYAQLTGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQL 354 Query: 334 QNVTFYHENLEEDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCN 390 +N TF E+ + W G D V++DP R G + ++KL P RIVY+SCN Sbjct: 355 KNTTFECGKAEDVIL--TWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCN 412 Query: 391 PATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 P+T RD++ +L Y + + +DMFP T H+E++ LF R Sbjct: 413 PSTQQRDAQ-ILAEQYELVEITPVDMFPQTTHIETVALFVR 452 >UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=20 Tax=Cyanobacteria RepID=Y1967_SYNY3 Length = 463 Score = 181 bits (460), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 136/450 (30%), Positives = 214/450 (47%), Gaps = 37/450 (8%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 ++ +++ L+ G+G+ R N + +F+P P + EV + + K+ YA A++++ L S + Sbjct: 18 VVELTITGLNHQGEGIGRFNERVVFVPDTAPGDRLEVRLVKVKRNYALAQLLKILEPSVQ 77 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDV--SEVIADVP--WGY 127 R P C CGGCQ QH Q SK AL R+ E + P GY Sbjct: 78 RTRPSCIVADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGY 137 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL---- 183 R +A L+ KT Q+Q G+ + GS +V++ QCP+ +L LL +V+ + + Sbjct: 138 RNKATYPLSR-SKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSI 196 Query: 184 -------QAMRHLGHVELVQATSGTLMIL----RHTAPLSSADREKLERFSHSEGLDLYL 232 +RHL + + Q T L+ L + L E LER+ G+ L + Sbjct: 197 YDEEKKQGKLRHLS-LRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNI 255 Query: 233 APD-------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 P+ E + + L + F QVN+G + ++ R + L++Q Sbjct: 256 QPEPNNRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQ 315 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 + ++D + G+G FTLPLA Q + +E V +GQ+NA +N + NV F +E Sbjct: 316 GAELLVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVE- 374 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 T P D +LLDP R G A V+++II+ P +I Y+SC P TLARD + L Sbjct: 375 --TVLPTLSEIPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAE 432 Query: 405 G-YTIARLAMLDMFPHTGHLESMVLFSRVK 433 G Y I + D FP T H+E V+ V Sbjct: 433 GFYGITWVQGCDFFPQTAHVECAVILKAVN 462 >UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2 Tax=Aquificaceae RepID=Y257_AQUAE Length = 425 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 126/437 (28%), Positives = 212/437 (48%), Gaps = 43/437 (9%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + ++V L G G +R NGK +F+ P+E E V ++KK Y A V + L SP R Sbjct: 6 LKLTVEKLVYGGYGFSRLNGKAVFVRFASPKELVEAKVVKEKKDYTEAVVTKVLISSPAR 65 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADVPWGYRRRAR 132 CP++G CGGCQ QH + + Q RSK +L R+ K I +VP+ ++ Sbjct: 66 RKAPCPYYGECGGCQIQHLNYEEQLRSKKDILLESLERIGK------IKEVPYEGEIPSK 119 Query: 133 LSLNYLP----KTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR- 187 NY K Q+ ++GF + ++VDV++C + ++ L+P +R L ++ ++ Sbjct: 120 KEFNYRVRVQFKIQENRVGFYRWDVKEVVDVEECLLAHERINELIPHIREVLKVIKDLQE 179 Query: 188 -HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHS------EGLDLYLAPDSEILE 240 H+ + + + + HT D + L+ + G+ Y + +++ Sbjct: 180 VHVNYSPTRDEATLKFVTITHT------DEKLLQNILENVLPEWVVGIGDYGKVGNSLVK 233 Query: 241 --TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 V E + D + S F QVN + + + L++ + + LDL CG+G Sbjct: 234 RYKVGREHIFMDVGKWQYRVSNDSFFQVNYTLWEDFLKEVLDF--SESYKKGLDLHCGVG 291 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 FT+PL+ Q + G + P+ ++ + NA++N NV F E+ T K Sbjct: 292 FFTIPLSEQGNFIEGADANPSAIKDAEYNAKINNRDNVIF------EEATAFKHLKRRIG 345 Query: 359 KVL----LDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 +V+ +DP R+G ++K +P +IVY+SCNP T ARD + L K GY + RL + Sbjct: 346 EVINLVVVDPPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKL 405 Query: 414 LDMFPHTGHLESMVLFS 430 +D FP T H+ES+ L Sbjct: 406 IDNFPQTYHIESIALLE 422 >UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J6R9_DESRM Length = 457 Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 136/459 (29%), Positives = 219/459 (47%), Gaps = 50/459 (10%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 T I+ + ++ L G+GV R+ +F+PG L E V + + KK +AR ++V L Sbjct: 6 TVGDIVDLEIHGLGHSGEGVGRYQKLAVFVPGALIGERVRVRINQVKKSFARGQLVEILK 65 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADV---- 123 + R P C + VCGGCQ QH Q K +AL ++ EV+ + Sbjct: 66 QTTARIVPNCESYQVCGGCQLQHLDYQEQLTYKRSVVESALFKIGGLKGVEVLPTLGMRN 125 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI---VDVKQCPILAPQLEALLPKVRACL 180 PW YR + L + ++++GF GS ++ + + C ++ ++ ++ + + Sbjct: 126 PWHYRNKIHLQVK--EAKGRIKLGFYAEGSYELAAGLAGQSCLLVQKEINQVIAILEELI 183 Query: 181 GSLQAMRH--------LGHVELVQA-TSGTLMILRHTAPLSSADREKLER---------- 221 S + + L HV + Q SG M++ T+P R Sbjct: 184 NSYKLTPYHWGEKRGLLRHVMIRQGFHSGQCMVVLVTSPEEWQAENAFSRALVARQPKIV 243 Query: 222 -----FSHSEGLDLYLAPDSEIL---ETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQK 273 + + G + L ++ ++ E + E+ NGL S F QVN ++ Sbjct: 244 SVIRNINRNPG-RIVLGEENRVMYGKEYIVDEL-----NGLNFNISANSFYQVNTLQTEE 297 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + +A E+ +Q +RV+D +CG+G L LA VVG+E VP V ++NARLNG+ Sbjct: 298 LYQKAKEFAQLQGHERVIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGI 357 Query: 334 QNVTFYHENLEEDVTKQPWAKN-GFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNP 391 N F+ +E+ + + AK+ D V+LDP R G V+ I + + RIVYVSC+P Sbjct: 358 TNTKFFQGAVEKLLPRM--AKDLKPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDP 415 Query: 392 ATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 ATLARD L K GY ++ +DMFP T H+E +VL S Sbjct: 416 ATLARDLGVLDKLGYQTLQVQPVDMFPWTYHVECVVLMS 454 >UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Bacteria RepID=B9KXM9_THERP Length = 406 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 128/428 (29%), Positives = 200/428 (46%), Gaps = 57/428 (13%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 T + + + + D+ G + R +G+ +F +P E+ V + +D+K ++ +V+ + Sbjct: 12 TLRTVPLHLEDMAYQGAAIGREDGRIVFAEYGIPGEDVLVAIEKDRKDHSLGRVIEVRTA 71 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSEVIADV----P 124 SPER P CP+FG+CGGCQ QH + Q K A L R+ K D V+ V P Sbjct: 72 SPERVDPPCPYFGICGGCQWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVPSPQP 131 Query: 125 WGYRRRARLSLNYLPKTQQLQMGF--RKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 +GYR AR S++ + +G+ R + + +C I+ P + +L + Sbjct: 132 YGYRNHARFSVD-----GKGNLGYISRPGHGYRFLRIDRCLIMHPAINEVLRR------- 179 Query: 183 LQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD-SEILET 241 LQ H+ H +V+ T +L H PD S I T Sbjct: 180 LQERAHVKHQLMVRYGVNTGELLVH--------------------------PDVSAIDPT 213 Query: 242 VSGEMPWYDSN--GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN 299 + P Y + G R S F Q N V ++++ LE + + V+D + G+G Sbjct: 214 IPSGQPAYHESLLGHRFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVGT 273 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 359 F LA + A V+G+E P+ V Q N L+ NV + +E + K D Sbjct: 274 FAAFLAPRVARVIGIEESPSAVSDAQVN--LDPFDNVEYVQAKVEHVLGKLAVRP---DV 328 Query: 360 VLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 V+LDP R G A + ++ L P R++YVSC+PATLARD L+ GY + + LDMFP Sbjct: 329 VILDPPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMFP 388 Query: 419 HTGHLESM 426 T H+ES+ Sbjct: 389 QTYHIESV 396 >UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01U84_SOLUE Length = 389 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 132/408 (32%), Positives = 204/408 (50%), Gaps = 38/408 (9%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G G+ R G+ +F P +LP E ++K RA+++ L+ +P+R + CP FG C Sbjct: 8 GDGLGRLEGRVVFAPFVLPGERIRAQAEKEKPGMVRARMLEVLAAAPDRVSAPCPVFGRC 67 Query: 88 GGCQQQHASVDLQQRSKSAALA----RLMKHDVSEVIADV---PWGYRRRARLSLNYLPK 140 GGC QHA + Q +K A LA RL K + E IA V P+GYR R +L + Sbjct: 68 GGCHYQHAPYEYQLATKQAILAEEMRRLGKIEPPEEIAVVSSEPFGYRNRVQLHV----- 122 Query: 141 TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSG 200 ++ ++G+R+A S + V QCP+ +P++EA + + + R + +E+ + Sbjct: 123 -EESRIGYREARSHKLCAVGQCPVGSPKIEAAIRALNEMARDSRWPRFMKSIEVFSDENQ 181 Query: 201 TLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSP 260 + + T +R RF G +I V G + D G R S Sbjct: 182 VQLNVLET------ERPVARRFFDWCG--------EKIPGMVEGAL---DYEG-RFRVSS 223 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 F QVN + ++V A+E + D LDL+ G+G +LPLA + V VE Sbjct: 224 NSFFQVNRFLIDRLVEVAIEGAE---GDTALDLYAGVGLLSLPLARKFREVTAVESGAGA 280 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKL 379 V Q NA NGL NV + EE + A D V+LDP R G V++++ +L Sbjct: 281 VRDLQFNAERNGLANVRALPKTAEEYLLALEAAP---DLVVLDPPRTGLGKTVVKRLSEL 337 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 P ++ V+C+PATLARD L+ AGY + ++ ++D+FP T HLE++V Sbjct: 338 RPRQVTIVACDPATLARDLAGLVAAGYRVEKMTLVDLFPQTYHLETVV 385 >UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5X0_NATTJ Length = 454 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 122/460 (26%), Positives = 212/460 (46%), Gaps = 49/460 (10%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 R + +T++++DL+ G+GV ++ +F+P LP E +T+TE KK YAR +V++ Sbjct: 5 RPVKKEEKLTLTIHDLNHQGEGVGKYRNFAIFVPFALPGEKVRITITEVKKNYARGQVLQ 64 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--------HDVSEVI 120 S +R P CP F CGGCQ QH S Q + K +A MK + + Sbjct: 65 HQDRSSQRVKPPCPFFQECGGCQLQHLSYKGQLQYKENLVANQMKKVAGLKNPRVLPAIG 124 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + PW YR + ++ + P + ++G + S ++V++ C I +L K+R + Sbjct: 125 MESPWYYRNKFQIPVK--PIGGKPRLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLV 182 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD---LYLAPDSE 237 S + + ++ + + G D+ +L + SE +D + L P Sbjct: 183 DSYEKEFYNCELKHIISRVG-----------DKTDQVQLTFVTGSEKIDNKQMILEPLKN 231 Query: 238 ILETVSG------------------EMPW---YDSNGL---RLTFSPRDFIQVNAGVNQK 273 + + G + W Y + L + S F QVN + Sbjct: 232 GMANLVGIVQNINKKPRGNVLGDRFKTLWGREYLMDNLLDKKFRVSAGAFYQVNPSQTEV 291 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + + E ++ + V+D++CG+G +L A A+ VVG+E V+ N +NG Sbjct: 292 LYQKVFELCKLKGVENVMDIYCGIGTISLLAAENASKVVGIEIAEEAVKDANINKNINGQ 351 Query: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPA 392 +N FY E++ T+ + V++DP R G ++ + + P +I YVSCNPA Sbjct: 352 ENAWFYQARAEDEKTESIIQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPA 411 Query: 393 TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 TLARD L++ GY +DMFP T H+E + + +++ Sbjct: 412 TLARDVGKLIEFGYYPELFQPVDMFPQTTHIEVICILTKI 451 >UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH77_MOOTA Length = 473 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 143/475 (30%), Positives = 211/475 (44%), Gaps = 72/475 (15%) Query: 18 TVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 +++ L+ G G+ +G+ +F+PG LP E V V K+ YAR ++V + SP+R Sbjct: 4 AITIIGLNHEGAGIGHLQDGRVIFVPGALPGEQVLVEVVSVKRNYARGRLVEVVEASPDR 63 Query: 77 ETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADV----PWGYR 128 P CP CGGC QH A + ++R AL RL V+ + PWGYR Sbjct: 64 VLPPCPEAASCGGCDLQHLDYRAQLHWKRRLVIDALQRLGHLRDIPVLPVLGMANPWGYR 123 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR- 187 + RL + ++ ++GF + GS ++ CP+L P LL RA + L + Sbjct: 124 NKVRLHV------RRGRLGFYRPGSHELAPFSCCPLLPP---GLLKAARAIVRLLPELPP 174 Query: 188 HLGHVELVQA-TSGTLMILRHTAPLSSADREKLE----RF-------SHSEGLDLYLAPD 235 L HV L Q +G L+++ P DRE E RF S + G P Sbjct: 175 GLQHVTLRQGLATGELLVVLEALPGWQGDRELAEKLAGRFPELVGVVSLAGGGRSRSGPK 234 Query: 236 SEILETVSGEMPWYDSNG------------------------------------LRLTFS 259 E W + G LR S Sbjct: 235 DFAGEPALECSGWVKTGGKEARRARYQEGFVPRRLGGRPFTLYGRDYLEERLGDLRFYIS 294 Query: 260 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 F QVN+ + + +A + +Q + VLD +CG G L L+ QA V GVE VP Sbjct: 295 ATTFFQVNSAQAEVLYNKAATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGVEVVPE 354 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQI 376 + ++N+ LN L NV F E + + A G+ + ++LDP RAG V+ + Sbjct: 355 AIVDARRNSILNNLANVHFRTGAAEAVLPR--LAGKGYRPEVIILDPPRAGCDRRVLAAV 412 Query: 377 IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +EP R+VY+SCNP+TLARD L +AG+ + +DMFPHT H+E + Sbjct: 413 ATMEPRRVVYISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVK 467 >UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Cyanobacteria RepID=Q2JP08_SYNJB Length = 464 Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 135/461 (29%), Positives = 215/461 (46%), Gaps = 58/461 (12%) Query: 16 IITVSVNDLDSFGQGVARH----NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 ++ + V L G G+A G+ +F+ +P + +TE K+ Y ++ +S Sbjct: 18 LLALEVTALTPQGDGIAHTVGLGQGRVVFVSQAVPGDQVVAQITEIKRNYLVGRIRSLIS 77 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARL----MKHDVSEVIADV 123 SP+R P C CGGCQ QH S Q +K AL R+ + V + + Sbjct: 78 PSPQRVRPACIVADKCGGCQWQHVSYAQQLATKQQILRDALERIGGLTLPQPVPILGSQQ 137 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL--- 180 P YR + + P+ Q L+MG+ + GS +V++ QCP+ +L+ L +++ L Sbjct: 138 PLRYRNKVTYPMAK-PEGQPLRMGYYQRGSHRLVNLNQCPVQDERLDVFLREIKRDLQET 196 Query: 181 --GSLQAMRHLGHVE-----LVQATSGTLMIL----RHTAPLSSADREKLERFSHSEGLD 229 RH GH+ + + T L+ L R L S ++R+ G+ Sbjct: 197 GWSVYDESRHQGHLRHLGLRIGRRTREVLLTLVSCSRRLPHLESWAERWMQRYPDLVGVC 256 Query: 230 LYL---------APDSEIL-------ETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQK 273 L L P++E++ E +G W DS F QVN + Sbjct: 257 LNLNSARTNAIFGPETEVIAGRGSLREEFAGFSLWIDST---------SFFQVNTEQAEA 307 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + L+++ E+ +LD +CG+G TL LA +A +GVE +P V + + NA+ NG+ Sbjct: 308 FFTWIADQLNLRGEETILDAYCGIGTLTLLLAQRAKRAMGVEALPEAVAQARYNAQFNGI 367 Query: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVSCNPA 392 + F+ +E+ + P A D V+LDP R G + + +KL P RIVY+SC+PA Sbjct: 368 ASAQFFQGTVEQVLPTLPPA----DIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPA 423 Query: 393 TLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSRV 432 TLARD + LL G Y + + D FP TGH+E + RV Sbjct: 424 TLARDLQILLAEGSYRLTQWRAADFFPQTGHVEGVAFLERV 464 >UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n=14 Tax=Cyanobacteria RepID=Y1228_SYNPX Length = 465 Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 137/442 (30%), Positives = 219/442 (49%), Gaps = 36/442 (8%) Query: 23 DLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCP 82 DLD G G+AR G + +PGLLP E A+V + + +K +++ RL SP R P C Sbjct: 26 DLDRDGHGLARWQGWVVVVPGLLPGERAKVQLQQRQKSRWLSRISERLDSSPTRRRPPCI 85 Query: 83 HFGVCGGCQQQHASVDLQQRSKSAALARLM------KHDVSEVIADV-PWGYRRRARLSL 135 CGGC QH Q+ K L + M H + + D GYR R + L Sbjct: 86 LAQDCGGCTLQHLEESAQRNWKQNQLHQTMLRLGGIDHPQAPALTDQRGLGYRNRGLIPL 145 Query: 136 NYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-----------LQ 184 + +L+MG+ + GS IV++ +CP+L P+L+AL+ ++ L + Q Sbjct: 146 RR-GEDDRLRMGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTSGLSADHDLSHSQ 204 Query: 185 AMRHLGHVELVQATSGTLMILRHTAPLSSADR---EKLERFSHSEGLDLYLAP--DSEIL 239 +RHLG + + T L+ + + L + R + +ER+ +G+ L L P ++IL Sbjct: 205 GLRHLG-LRIGHHTGEVLITVVSSQQLPALQRLAQQWIERWDPVKGVTLNLQPRRTNQIL 263 Query: 240 ---ETVSGEMPWYDS--NGLRLTFSPRDFIQVNAGVNQKMVARALEWLD-VQPEDRVLDL 293 TV P GL+L S F Q+N +++VA + WL + ++D Sbjct: 264 GATTTVLAGAPTIRELFCGLQLQLSTTTFFQINTPQAERIVACIVSWLSQAELAGPIVDA 323 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 +CG+G +LPLA Q VVG+E P +++ + NA NGL T + ++ K+ A Sbjct: 324 YCGIGTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQAGDVANLLKETLA 383 Query: 354 KNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK--AGYTIAR 410 +++DP R G + V++ I+ P + Y+SC+ AT ARD + LL+ Y + + Sbjct: 384 T--CSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKRLLQPEGPYRLEQ 441 Query: 411 LAMLDMFPHTGHLESMVLFSRV 432 L +D FP T HLE++ RV Sbjct: 442 LQPVDFFPQTTHLENLAFLRRV 463 >UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG03_THEYD Length = 389 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 114/424 (26%), Positives = 205/424 (48%), Gaps = 54/424 (12%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 I +++ + G+ + +HNGK +F+P +P E + + +D+K Y RA+++ + S R Sbjct: 4 IEITLTGIAHLGEAIGKHNGKVVFVPYAIPGETVKAKIIKDEKDYCRAEILDIIEPSFFR 63 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--------HDVSEVI--ADVPWG 126 E P C FG+CGGC QH + Q + K + +K D + + A+ P+ Sbjct: 64 ENPSCKLFGICGGCSFQHVAYSYQIKLKEIVVMEQLKRIGGFENPEDFTNLTLKAESPYN 123 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR RA S+N +Q +GF+ G+ + V+ C I+ ++ +L Sbjct: 124 YRNRADFSIN-----RQNLLGFKIRGTHKFLHVECCHIMHDKINKMLS------------ 166 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEM 246 +L+ P + + R+ + G L + P+ + +E +G+ Sbjct: 167 -----------------LLQGKKPKRKSHNITI-RYGINTGTWL-IQPEMDTVEIETGQK 207 Query: 247 PWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 +Y+ G S F QVN +K++ L ++ Q + V+D + G+G FT+ LA Sbjct: 208 FYYERLLGKDFIISAPSFFQVNTYQAEKLIQTVLNYI-TQEDKTVIDAYAGVGTFTVFLA 266 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 +A V+ +E + + Q N + N+T+ + EE + + NG D +++DP Sbjct: 267 QKAEKVIAIEESRSAYKDAQIN--IKNFDNITYLCKKTEEALFESKI--NG-DAIVIDPP 321 Query: 366 RAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R G V+Q I + + +++YVSC P+TLARD + L + GY + + +DMFP T H+E Sbjct: 322 RVGCMKEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLKEIQPVDMFPQTYHIE 381 Query: 425 SMVL 428 ++ L Sbjct: 382 NVAL 385 >UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDZ7_9FIRM Length = 484 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 133/447 (29%), Positives = 226/447 (50%), Gaps = 41/447 (9%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 +TV+ + G+G+A GK +F+ LLP E AE+ + + + +YA+ +VV+RL+DSP+R Sbjct: 9 VTVTAKKIGINGEGIAYLEGKPVFVDQLLPGETAEIVLLDSQLRYAKGQVVKRLNDSPQR 68 Query: 77 ETPRCPHFGVCGGCQ----QQHASVDLQQRSKSAAL---ARLMKHDVSEVIADVPWGYRR 129 P+CP G C GC + A + +++ AL A L + V VIA P G Sbjct: 69 VKPQCPVQGRCSGCPLMILKPEAQLQVKRELVQEALIKYAGLSRDKVQPVIAS-PSGLGY 127 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R + L + +L G + GS+ ++ + C I P LEAL ++ A L L Sbjct: 128 RNQCKLPIREERGRLVNGLFEEGSNRVMPIAHCLIHDPDLEALRKQILA----LANQFRL 183 Query: 190 GHVELVQATSGTLMILR-----HTAPLSSAD----REKLERFSHSEGLDLYLA---PDSE 237 + + T ++LR + L S + + +E+ EG+ + PD Sbjct: 184 KAYDPKKGTGLRTLVLRGFEGQYQCVLVSGEDSLPKGFIEKLKAIEGMTCIMQNINPDKR 243 Query: 238 ILETVSGEMPWYDSNG----------LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + S W G +RL+ S F Q+N +M+ A ++P Sbjct: 244 TRQLFSNR--WSLLAGEDRLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASL--IEPC 299 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 D +++ + G+G +L L +A +++G+E VP VE ++NARLN +NV F + +++ Sbjct: 300 DTLVEAYSGVGGISLMLKEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEM 359 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVM-QQIIKLEPIRIVYVSCNPATLARDSEALLKAGY 406 K+ + D V++DP R G G M + + + +P +IVY+SCNPATL ++ + L+ Y Sbjct: 360 -KKIIRRTKIDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKE-LRDLY 417 Query: 407 TIARLAMLDMFPHTGHLESMVLFSRVK 433 + + DMFP+T H+E++VL S++K Sbjct: 418 EVKTVIPFDMFPNTPHVETVVLLSKLK 444 >UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillaceae RepID=A4IK46_GEOTN Length = 463 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 145/471 (30%), Positives = 215/471 (45%), Gaps = 67/471 (14%) Query: 14 RQIITVSVNDLDSFGQGVA----RHNGK----TLFIPGLLPQENAEVTVTEDKKQYARAK 65 +Q + LD G G A GK L IP LP E V + K++ A A+ Sbjct: 6 KQSFITDIEQLDKKGAGQAVVWQEEEGKRKKLKLTIPSTLPGEKVRVLIDRPKRRKANAR 65 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD------VSEV 119 + + PER P CPHF CGGC QH + Q R K+ + L++ V E Sbjct: 66 LEEVIEAHPERLEPPCPHFDRCGGCVWQHWQYEGQLRHKTEHVKALLEQHGFDPNIVRET 125 Query: 120 IA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQL-EALLPKV 176 I + PW YR + + + P+ +G + G+ I+ ++ C I ++ +A + Sbjct: 126 IGMEHPWHYRNK--MEFTFSPEGL---LGLHEQGNFRQIISLETCLIAGERIVKAAMEVA 180 Query: 177 RAC----LGSLQAMRHLG---HVELVQA-TSGTLMI--LRHTAP---LSSADREKLERFS 223 R L H G HV + ++ +G +M+ AP L A + ER + Sbjct: 181 RWARDHQLPGYHKDTHEGLLRHVMVRESFATGEVMVALFATEAPEGELKQAADDLTERIT 240 Query: 224 HS----------EGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQ 272 + E +E ++G YD G R F Q N Sbjct: 241 KALPEVKSLLWLENRAWADRIQAEQTHVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAA 300 Query: 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG 332 K+V ALE QP ++++DLFCG+G F+LP A + ++ G+E V +E ++NA+ NG Sbjct: 301 KLVELALEMGKPQPHEKMIDLFCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNG 360 Query: 333 LQNVTFYHENLEEDVTKQPWAKNGFDKVL----------LDPARAGAAG-VMQQIIKLEP 381 + N F + A+ G D+VL LDP R+GA G VM++I + +P Sbjct: 361 IDNTYFLARD----------ARRGIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQP 410 Query: 382 IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 RIVYVSCNP T A D L+ GYT+ + +DMFPHT H+E + L SRV Sbjct: 411 ERIVYVSCNPETFAADIAELVPFGYTLKTVQPVDMFPHTAHVELVALMSRV 461 >UniRef50_Q1D5V4 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Cystobacterineae RepID=Q1D5V4_MYXXD Length = 431 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 134/429 (31%), Positives = 203/429 (47%), Gaps = 22/429 (5%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 I +++ L G+GVA G+T+FIPG P + V + E + + R + + +S P+R Sbjct: 9 IELTIERLGQLGEGVASWQGRTVFIPGTFPGDTVRVHL-ETQGRVLRGILRQVVSPGPDR 67 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEV----IADVPWG 126 C + CGGC + Q+ +K + ++H D V +A WG Sbjct: 68 RDAPCVYASDCGGCDWLALAEPAQRSAKQEIVLSTLEHLGHLARDSFTVRPLLVAPRDWG 127 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YRRRA L + +G+ S + V V+ C L P L AL K+ L L Sbjct: 128 YRRRAVLH-----PAGKGALGYFGRRSHERVPVEVCGALTPVLTALPGKLAPLLKPLA-- 180 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEM 246 + V L+ + + P+++ E E + L+ + E + G+ Sbjct: 181 KDAEEVLLLAEGDKAAFAVNLSGPVTARHLEAAEAAVRALRLEGAVLTPKEGSARLLGKP 240 Query: 247 PWYDSNGLR----LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 + LR L P F Q +A N +V A+ L + D VL+L+ G GNFT Sbjct: 241 ALRSYSPLRPEVPLYLRPDAFAQAHAEANVGLVTSAVYELGARESDTVLELYSGNGNFTF 300 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 PLA AASV+GVE P VE Q++A G+ NV F + + + FD L Sbjct: 301 PLAGTAASVLGVESSPVGVELAQRSAHEGGVTNVRFIQGDARKVCDGLVAEQRRFDVCLA 360 Query: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 DP RAGA G+ + + L R+VYV+C+PA+LARD+ L+ AGY L ++DMFP T H Sbjct: 361 DPPRAGAPGLAKWMTALGVRRVVYVACDPASLARDAAGLVAAGYKPLALQVVDMFPQTHH 420 Query: 423 LESMVLFSR 431 +E+++ F R Sbjct: 421 VEAVMSFER 429 >UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desulfuromonadales RepID=Q3A1Z9_PELCD Length = 489 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 211/449 (46%), Gaps = 34/449 (7%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 RR + ++I V+++ L+ G G+ R+ GK + + G LP E V V + ++ + R Sbjct: 32 RRKPSAELIEVTIDQLNDDGIGIGRYQGKEVLVAGSLPGEKVCVAVEHEGQRRIIGQFRR 91 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHAS----VDLQQ---RSKSAALARLMKHDVSEVIA 121 L+ SP R+ CP C GC +D +Q R A +L D+S ++A Sbjct: 92 LLTKSPARKPSPCPSLRDCQGCSLMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILA 151 Query: 122 -DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA-- 178 + P GYR A+L++ + ++ +G + GS ++ D+ CP+ P + ++ VR Sbjct: 152 AEEPLGYRTSAKLAVAR--RNGRIVIGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEI 209 Query: 179 -----CLGSLQAMRHLGHVELVQAT--SGTLMIL---------RHTAPLSSADREKLERF 222 L + R L L++ + +G M+ R TA R+ E Sbjct: 210 ARQDIYLYNPVTRRGLLRYLLIKVSPATGKAMVTFVTAQREYKRITALAKWVARKIPEVV 269 Query: 223 SHSEGLDLY---LAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARA 278 S + ++ + E L V G+ +D G +RL SP F QVN ++ A Sbjct: 270 SVQQNVNASSGNVIMGRETLRMV-GQPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALV 328 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 W ++ + LDL+CG+G L LA A V+GVE V V QQNA +N L N F Sbjct: 329 RRWAALESHEFALDLYCGIGGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRF 388 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARD 397 + E + +L+P R+G V+Q + +L+P I+YVSCNP TLARD Sbjct: 389 LAGDTAELLQDLIVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARD 448 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESM 426 L K GY A + +DMFP T H+ES+ Sbjct: 449 LAELQKLGYRTAEIQPVDMFPQTAHVESV 477 >UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=72 Tax=Bacteria RepID=Y1095_PORGI Length = 465 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 221/463 (47%), Gaps = 51/463 (11%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + DL + G + R + +F+P P + V V + K+ + + ++V S SP R+ Sbjct: 1 MEITDLAAEGNALCRIDDMVMFVPFAAPGDRCTVQVVKKKRNFMQGRIVSIESPSPIRKG 60 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVI----ADVPWGYRRR 130 P C HF VCGGC+ QH ++Q R+K + AL RL K +V E+ ++ YR + Sbjct: 61 PFCTHFTVCGGCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNK 120 Query: 131 ARLSLN----YLPKTQQ-----------LQMGFRKAGSSD-IVDVKQCPILAPQLEALLP 174 + + LP+ Q +GF G D ++D+++C + A + + Sbjct: 121 LEFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRL 180 Query: 175 KVRA-CLG--------SLQAMRHLGHVELVQATS-GTLMILRHTAPLSSADREKL----- 219 +R C+ L+ L +++ TS G LM++ A RE L Sbjct: 181 FIREYCMQDPERYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVA 240 Query: 220 ERFSHSEGLDLYLAP--------DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVN 271 ERF L LY+ D E+L E + GL+ + F Q N+ Sbjct: 241 ERFPQITSL-LYVINTKCNDTIGDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQA 299 Query: 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN 331 ++ A E+ + ++ V DL+ G G +A QA V+G+E VP +E + N+ LN Sbjct: 300 YQLYRIAREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLN 359 Query: 332 GLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSC 389 G++N FY ++++ +T ++G D V+ DP RAG V+ I+ P RIVYVSC Sbjct: 360 GIENTLFYAGDMKDILTNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYVSC 419 Query: 390 NPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSR 431 NPAT ARD L+ G Y + +DMFPHT H+E++VL R Sbjct: 420 NPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVR 462 >UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B1C3C0_9FIRM Length = 449 Score = 174 bits (440), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 122/439 (27%), Positives = 220/439 (50%), Gaps = 41/439 (9%) Query: 23 DLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCP 82 DL GQGV + + T F+ G+L E ++ V + K YA A+++ + S R P+CP Sbjct: 13 DLTHDGQGVVKVDNFTYFVKGMLVGETGKLKVIKVLKNYAIARLIELDNVSKYRVEPKCP 72 Query: 83 HFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSE-VIADVPWGYRRRARLSL 135 F CGGCQ QH + + Q K+ + ++ +V++ ++ + PW YR + ++ + Sbjct: 73 VFKPCGGCQLQHLNQEGQMLFKTKRVKDCLERIGNCFVEVNDCLMMEDPWYYRNKVQMPI 132 Query: 136 NYLPKTQQLQMGFRKAGSSDIVDVKQCPI-------LAPQLEALLPKVRACLGSLQAMRH 188 K +L GF K S++I+ +C I + +++ L+ K + + + H Sbjct: 133 G--VKGNRLVTGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKYK--IYPYDKLSH 188 Query: 189 LGHVELVQATSG------TLMILRHTAPLSSADR---EKLERFSH--------SEGLDLY 231 G+++ + G L+++ + +++ D+ E + FS + +D Sbjct: 189 QGNIKHILTKHGYHSNEIMLVLISYLDKINNVDKLVAEITKEFSMIKTVIQNINHRIDNV 248 Query: 232 LAPDSEILETVSGEMPWYDSNGL--RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 + D EI+ + G+ YD N L R S + F QVN +K+ +A+E+ + +D Sbjct: 249 ILGDKEII--LFGDGFIYD-NLLDNRYKISLKSFYQVNPIQVEKLYQKAIEFAKLSNDDV 305 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 VLD +CG+G L LA V GVE V + + NA+LN ++NV F ++ + + + Sbjct: 306 VLDAYCGIGTIALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKYMIE 365 Query: 350 QPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 D V +DP R G + + +I+ +P +I+Y+SC+ AT ARD + L + Y + Sbjct: 366 LVNNNIHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEFNYQV 425 Query: 409 ARLAMLDMFPHTGHLESMV 427 +DMFPHT H+E+++ Sbjct: 426 DMCQPVDMFPHTTHIENII 444 >UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=9 Tax=Thermotogaceae RepID=Y1094_THEMA Length = 439 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 129/438 (29%), Positives = 213/438 (48%), Gaps = 39/438 (8%) Query: 19 VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 V + + + G G+A NGK + + G P E + +K+ ++ KVV L +S +R Sbjct: 5 VRIQKMVNGGYGLAHLSNGKVVLVEGAYPGEEVLIKTYREKRDFSFGKVVSLLKESEDRI 64 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL-----MKHDVSEVI-ADVPWGYRRRA 131 P C +FG CGGC + Q R K L L +K +V +V +D+ + YR + Sbjct: 65 KPPCRYFGRCGGCHWMDVKYETQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTKM 124 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH--- 188 Q ++G +K S ++D+K C + +L V+ + L + Sbjct: 125 EFHF------QGRKLGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWE 178 Query: 189 -----LGHVELVQA-TSGTLMILRHTAPLS-----SADREKLERFSHSEGL-DLYLAPDS 236 L H+ + A ++ M++ T S R L+RF + + + DS Sbjct: 179 TRKGVLKHLVIRYAFSTDQFMVIFVTKTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDS 238 Query: 237 EIL----ETVSGE-MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 +L +T+ GE + + + R P F Q N + K++ +Q + VL Sbjct: 239 VVLRGPYKTLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVL 298 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DL+ G+G F++ + AA V+ VE V+ G+ NA +N +N+ E +E+DV Sbjct: 299 DLYAGIGTFSVRTSFSAARVISVESSRVAVKAGKANANINSRKNI----EYVEQDVLDFL 354 Query: 352 WAKNG-FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 +G D+++LDP R+GA VM++I +L P RIVYVSC+P+TL RD + L++ GY+I Sbjct: 355 KNYSGRADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGYSIV 414 Query: 410 RLAMLDMFPHTGHLESMV 427 R+ DMFP T H+E+ V Sbjct: 415 RVKPFDMFPQTYHVETAV 432 >UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C5ELW2_9FIRM Length = 475 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 136/472 (28%), Positives = 213/472 (45%), Gaps = 57/472 (12%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q TV++ D++ G GV + +G FI + + + KK Y A+++ L S Sbjct: 5 QEFTVTIEDMNEDGAGVGKLDGYIWFIKDTVIGDVVRAKAMKMKKSYGFARLMEVLEPSA 64 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSEVIA------DVP 124 R P CP CGGCQ Q S + Q R K L R+ K E+ + P Sbjct: 65 GRVEPPCPVSRQCGGCQLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMGMENP 124 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL--GS 182 W YR +A+ K ++ GF + DI+ C + + + +L ++ + Sbjct: 125 WRYRNKAQFPFGR-NKDGEIIAGFYAGRTHDIIGNDDCLLGVEENQEILGIIKGFMKENG 183 Query: 183 LQAMRHLGHVELVQAT-------SGTLMI----------------LRHTAPLSSADREK- 218 L+ H LV+ +G LM+ LR + S AD Sbjct: 184 LEPYDENAHKGLVRHVLIRKGFKTGELMVCLVVNGRTLGGRLEDGLRDSRADSLADNSAD 243 Query: 219 ------LERFSHSEGL-DLYLAPDSEILETVSGEM------PWYDSN---GLRLTFSPRD 262 +E+ +G+ + + + E + G+ P Y ++ ++ SP Sbjct: 244 RLAGCLVEKLCQVKGMTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYIGDVQYQISPLS 303 Query: 263 FIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322 F QVN +K+ ALE+ D+ + V DL+CG+G +L LA +A V GVE +P +E Sbjct: 304 FYQVNPVQTEKLYGTALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQAIE 363 Query: 323 KGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF--DKVLLDPARAGAAGV-MQQIIKL 379 ++NA LNG+ NV F+ EE V + + KN D +++DP R G V + I+K+ Sbjct: 364 DARRNAALNGMDNVEFFVGKAEE-VLPEQYEKNQIHADVIVVDPPRKGCDTVCLDTILKM 422 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 P ++VYVSC+ ATLARD L GY + ++ DMFP T H E +V R Sbjct: 423 RPEKVVYVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCR 474 >UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clostridium RepID=A3DG93_CLOTH Length = 453 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 124/449 (27%), Positives = 218/449 (48%), Gaps = 36/449 (8%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 ++ T+ + + GQGV R + T+F+ G + E E+ + + KK YA K+++ L S Sbjct: 8 EVYTIDITGMTHEGQGVGRIDNFTVFVDGPVEGEKVEIKIIKVKKSYAIGKLLQVLEPSS 67 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKS----------AALARLMKHDVSEVIADVP 124 +R P CP + CGGC QH + + R K+ L ++ HD V + P Sbjct: 68 DRTEPFCPSYKRCGGCSLQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDT--VGMEQP 125 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPI---LAPQLEALLPKV--RAC 179 YR +A+ + ++ GF S +I+D C I ++ ++ A++ + + Sbjct: 126 VNYRNKAQYPIGRY--KDGIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNN 183 Query: 180 LGSLQAMRHLGHVELVQA----TSGTLMILRHTAPLSSADREKL-ERFSH------SEGL 228 + + + G V + +G +M++ + ++KL +R S L Sbjct: 184 ISTYDEITGEGLVRHIMTRVGFKTGEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSVVL 243 Query: 229 DLYLAPDSEILE----TVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 ++ + IL V G D G + SP F QVN + + +AL++ Sbjct: 244 NVNTKRTNVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDYAQ 303 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + ++ V DL+CG+G +L L+ +A + GVE V A V+ +NA++NG++N F Sbjct: 304 LTGKETVFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEA 363 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E+ + + D V++DP R G V++ ++ ++P RIVYVSCNPATLARD + L Sbjct: 364 EKVIPEMYEKGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKYLA 423 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + G+ + + +DMFP T H+E + L + Sbjct: 424 EGGFEVREVQPVDMFPWTYHVECVALIEK 452 >UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FXL7_9FIRM Length = 499 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 140/461 (30%), Positives = 215/461 (46%), Gaps = 43/461 (9%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKV 66 AK+ Q+ V DL GQGV + G F+ G++P E + V + K + A++ Sbjct: 44 AKQVFKKNQVHQGQVVDLTHEGQGVVKIEGYPFFVEGVIPGEQVAIKVLKVGKSFGFARL 103 Query: 67 VRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVI-- 120 L+ SP+R P G QH + Q ++K A +RL K S + Sbjct: 104 EEVLTPSPDRVEITDPIGRQIGTMTLQHMAYPAQLKAKQALVKQVFSRLGKFPESLEVRP 163 Query: 121 ---ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 D PW YR +A++ + + QL+ GF + S +V V+ I P ++ + R Sbjct: 164 TYGMDHPWQYRNKAQIPVRTV--KGQLETGFFRKNSHQLVPVENFHIQDPAIDQAILVTR 221 Query: 178 ACLGSLQ-----------AMRHL--------GHVELVQATSGTLMIL--RHTAPLSSA-- 214 L L +RH+ G V L+ +G + + L+ A Sbjct: 222 DILRQLGYSAYDEESRKGQIRHIIVKRGHYSGQVMLILVVNGKGLPAEDKLIKALTKAIP 281 Query: 215 DREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQK 273 + L SH++ ++ + P + +L G+ + D GL + SP F QVN + Sbjct: 282 NLVSLVLNSHTQANNVIMGPTNRLL---WGQPVYQDQMLGLDFSISPHSFYQVNTPQAEA 338 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + ALE D+ + VLD +CG+G +L LA QA V +E VP ++ + NA NGL Sbjct: 339 LYRYALEAADLSGSETVLDAYCGIGTISLALARQAGQVYAMEIVPEAIDMARANAEANGL 398 Query: 334 QNVTFYHENLEEDVTKQPWAKNG--FDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCN 390 NVTF EE + W G FD ++DP R G ++ +I+L P +IVYVSCN Sbjct: 399 SNVTFQAGKAEEVLPA--WQAEGIHFDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCN 456 Query: 391 PATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 PAT ARD + L +AGY + + +D+FP T H+E + L R Sbjct: 457 PATCARDCQLLAQAGYELQWVQPVDLFPKTAHIEVVGLLER 497 >UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=1 Tax=Gloeobacter violaceus RepID=Y3134_GLOVI Length = 457 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 131/454 (28%), Positives = 216/454 (47%), Gaps = 49/454 (10%) Query: 15 QIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 Q +TV + L + G G+AR +G+ LF+ G +P + E + KK + K+++ + S Sbjct: 15 QTVTVPITALAAGGDGIARLTDGRVLFVAGAVPGDTVEARLVHLKKDHGFGKILQIVQAS 74 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADV-PW 125 P R CP CG CQ Q Q +K + ++H V VIA P+ Sbjct: 75 PHRIEAPCPVAERCGSCQWQWIDYPFQLEAKQRQVREALEHLGGFAEPPVEPVIAQPRPF 134 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS--- 182 GYR ++ + + + + +G+ + S IV + CP+ +L+ LL R + + Sbjct: 135 GYRNKSTFPIGRDARGEPV-IGYYQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQGW 193 Query: 183 --------LQAMRHLGHVELVQATSGTLMIL----RHTAPLSSADREKLERF-------- 222 A+RHLG + + + T L+ + + + A + ++RF Sbjct: 194 SIYDEKHHRGALRHLG-LRIGERTGQRLLTFVVNGQTLSGIKPAAQALMDRFADLVGVCL 252 Query: 223 -SHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQV---NAGVNQKMVARA 278 +H+E + P + L + +G R P F Q+ A + ++VAR Sbjct: 253 NTHTERGNTIFGPQTRCL--AGQDFIEEVLDGFRFRIEPTTFFQICTSQAEILARLVARG 310 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 D E V+D +CG+G +LPLA A +VVG+E VE+ +QNAR+NG++N F Sbjct: 311 A---DATAEQTVVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIENCRF 367 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARD 397 +E + P + D V++DP R G V++ I+ P+R+VYVSCNPATLARD Sbjct: 368 LAGTVEALL---PDLRA--DIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARD 422 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + L+ GY + + +D+F T H+E + R Sbjct: 423 LKRLVAGGYCLVGVQPVDLFAQTHHVECVATLER 456 >UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT87_9CLOT Length = 506 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 126/470 (26%), Positives = 215/470 (45%), Gaps = 59/470 (12%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 V++ D+ G G+ R +G FI + + V + KK Y A+++ + S +R Sbjct: 26 FVVAIEDMSEDGAGIGRVDGYIWFIKDTVIGDVVRAGVMKMKKTYGFARLIEVVEPSKDR 85 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---------------------- 114 PRCP CGGCQ Q + Q R K + +K Sbjct: 86 VEPRCPVARQCGGCQLQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECGSEDEGAG 145 Query: 115 -------DVSEVI-------ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK 160 D +++ + PW YR +A+ + K ++ GF + I++ + Sbjct: 146 TGERAGADGRKIVRMEPIMGMEEPWRYRNKAQFPFG-MSKDGRVITGFYAGRTHSIIENE 204 Query: 161 QCPILAPQLEALLPKVRACLG--SLQAMRHLGHVELVQ--------ATSGTLMILRHTAP 210 C + + +L VR + ++ GH LV+ AT ++ L Sbjct: 205 DCLLGVEENREILRIVREFMEEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMVCLVVNGR 264 Query: 211 LSSADREKLERFSHSEGL-DLYLAPDSEILETVSGEM------PWYDSN---GLRLTFSP 260 D +ER +G+ + L ++E + G+ P Y ++ ++ SP Sbjct: 265 KLPKDEVLVERLRQVDGMTSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGDVKYQISP 324 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 F QVN K+ ALE+ + E+ V DL+CG+G +L LA +A V GVE VP Sbjct: 325 LSFYQVNPAQTVKLYGTALEYAGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQA 384 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPARAGAAGV-MQQIIK 378 +E ++NA++NG++NV F+ EE + ++ K + D +++DP R G V + I+K Sbjct: 385 IEDARRNAKINGIENVEFFVGKAEEVLPREFEEKQIYADVIVVDPPRKGCDEVCLDTIVK 444 Query: 379 LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVL 428 + P R+VYVSC+ ATL RD + L + G+ + R+ DMF +GH+E++++ Sbjct: 445 MGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIM 494 >UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFU4_RHOM4 Length = 466 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 138/445 (31%), Positives = 216/445 (48%), Gaps = 47/445 (10%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+ + R +G LF+ G +P + A V V + KK YA ++V L SP R P C +FG C Sbjct: 19 GKSLTRVDGYVLFVEGGVPGDRARVRVVKRKKNYAEGRIVELLEPSPLRTEPCCRYFGTC 78 Query: 88 GGCQQQHASVDLQQRSKSAALARLMKH-----DVSEVIADVP----WGYRRRARLSLN-- 136 GGC+ QH + Q +K ++ + H DV EV +P +GYR + S + Sbjct: 79 GGCKWQHVRYEAQLEAKRQSVYEALVHHGGFEDV-EVRPTLPSPRLYGYRNKMEFSFSAD 137 Query: 137 -YL---------PKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLGS--- 182 +L P + +G G+ ++D+++C + P LL ++RA + Sbjct: 138 RWLTPEEIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPITVRLLNELRAFFKAKGW 197 Query: 183 --LQAMRHLGHVELVQATSGT----LMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS 236 RH G++ + +GT +M+ T+ A +L F + ++ ++ Sbjct: 198 EPWDIRRHEGYLRHLVIRTGTRTGEVMVNLVTSRYDEARMAELGAFLQEQFPEVTTLVNT 257 Query: 237 -----------EILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 E T+ G +D G R +P F Q N +++ A E + Sbjct: 258 INSRPAQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYEVARELAAL 317 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 +P+D V DL+CG G ++ +A VVGVE V + VE + NA NG+ N TF +L Sbjct: 318 RPDDLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTFVAGDLL 377 Query: 345 EDVTKQPWAKNGF-DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E +T +G D V++DP RAG V+++I +L P R VYVSCNP T ARD + LL Sbjct: 378 EVLTPAFVRTHGRPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQTQARDLK-LL 436 Query: 403 KAGYTIARLAMLDMFPHTGHLESMV 427 + Y I + +D+FPHT H+ES+V Sbjct: 437 RDLYRIEAVQPVDLFPHTDHVESVV 461 >UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6H3_HYDS0 Length = 415 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 125/428 (29%), Positives = 201/428 (46%), Gaps = 35/428 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + L G G+ R K F+P LP E ++ +KK Y+ AK+ + SP R Sbjct: 1 MIVEIEKLVHNGYGMGRFQNKVYFVPFTLPNEKVKIKDIVNKKDYSMAKLEAVVEPSPHR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-------HDVSEVIADVPWGYRR 129 P CP+FG CGGC QH Q KS L +K +++ +I D P+ YR Sbjct: 61 IEPLCPYFGRCGGCHFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRN 120 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R + K + ++GF D V V+ CPI + + L+P ++ + +H Sbjct: 121 RVKF------KVRNKELGFVGV-DEDFVKVEHCPISSKAINDLMPFLK------EFAKHF 167 Query: 190 GHVELVQATSGTLM-ILRHTAPLSSADREKLERFSH----SEGLDLYLAPD----SEILE 240 + S T + A D+EKL++F + + L D +I+ Sbjct: 168 NPSWISVFYSDTQKEYMVKFASYDYIDKEKLKKFKEHLTPKNVVGITLVKDDKREDKIIL 227 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 ++ + + ++ S F QVN V QK++ LE + DRVLD + G+G F Sbjct: 228 SIGTPFTFIELLKIKYRISVNSFFQVNIKVAQKLLQTLLEKENYF--DRVLDDYGGVGLF 285 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 L LA ++ SV + + + + +A++N + NV+FY +N + K + + Sbjct: 286 GLHLARRSGSVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLKKSLYKHANL--L 343 Query: 361 LLDPARAGAAGVMQQIIKL-EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 +LDP R+G + +I L +P I Y+SC P++LARD + LL Y I + M DMFP Sbjct: 344 VLDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLK-LLGKKYQIKEIYMADMFPQ 402 Query: 420 TGHLESMV 427 T H+E+ V Sbjct: 403 TYHIETAV 410 >UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M703_9BACT Length = 454 Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 150/460 (32%), Positives = 218/460 (47%), Gaps = 60/460 (13%) Query: 17 ITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 + + + ++S GQG++ +G+ +F G LP E +T +KK YA A++ P+ Sbjct: 1 MKLEIEGVNSLGQGLSHLPDGRVVFCTGALPGETVVARLTMEKKAYAVAEIETVAVPHPQ 60 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADVP----WGY 127 R P C + CGGCQ QHAS LQ KS +L RL D+ E I+ +P WGY Sbjct: 61 RVKPSCRWYETCGGCQLQHASRSLQLELKSLIVEDSLRRLGGFDLPEKISCLPSPVQWGY 120 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL--GSLQA 185 R +A + + GF K G+ DIV ++ CP++ Q L +R + G A Sbjct: 121 RNKASFPVRRTASGE--TTGFFKMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSA 178 Query: 186 MRH------LGHVELVQAT--SGTLMILRHTAPLSSADRE------KLERFSHS-----E 226 L H+ + +T SG L +L T S D+E L R+ S Sbjct: 179 YDEKTGRGWLRHIVVRASTYGSGLLALLVVT---SKPDQEGMASLRDLWRYLQSRQPALS 235 Query: 227 GLDLYLAPD--SEIL--ET--VSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARAL 279 GL L + P + I+ ET V+G ++ G RL + F QVN AR Sbjct: 236 GLALSINPSRGNRIIGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTA----QAARLF 291 Query: 280 EWLD--VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 ++ V R L+L+CG+G+ T LA ++ +V E P VE ++N N L NV Sbjct: 292 DYASSLVPDGSRTLELYCGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVE 351 Query: 338 FY---HENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIR-IVYVSCNPAT 393 E L D+ + G D +++DP R G G M + I+ IVYVSCNPAT Sbjct: 352 LRLSPAEKLPSDLFE------GQDCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPAT 405 Query: 394 LARDSEALLKAGYTI--ARLAMLDMFPHTGHLESMVLFSR 431 LARD+ L AGY + + + DMFP T H+E++ L R Sbjct: 406 LARDAARLQSAGYQLVTSSVRAFDMFPQTSHVETVALLCR 445 >UniRef50_D2LHX8 (Uracil-5)-methyltransferase n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHX8_RHOVA Length = 443 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 134/427 (31%), Positives = 200/427 (46%), Gaps = 25/427 (5%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + +T+ +N + + G GVAR + IP L E + V K + +V SP Sbjct: 19 ETLTLGINAMGAQGDGVARVGDAPVHIPFTLAGEIVQAEVAGAKGRLIAVEVA-----SP 73 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARL-MKHDVSEVIADVPWGYRR 129 ER P C HFGVCGGC QH + K+ AALA+ ++ E P RR Sbjct: 74 ERVDPVCRHFGVCGGCALQHWAATPYDAWKAGLVEAALAQARVRAPSVETRKTYPISSRR 133 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 RA + L++GF A S D+VD+++CPIL+PQL A LP +RA L A R Sbjct: 134 RAAFTARK--DEGALRLGFNAARSHDLVDIEECPILSPQLAAALPHLRAGLRGAMADRGE 191 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY 249 +++ +G L + L+S+ R LE S + D A + +SG +P Sbjct: 192 AKIQVAAVDNG-LDVAIAGPRLASSARHALE--SELQAADAIRASWNGEALFISG-VPRV 247 Query: 250 DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR--VLDLFCGMGNFTLPLATQ 307 G+R++ F+Q + M A +E LD + V DLF G+G FT P+AT+ Sbjct: 248 GFGGVRVSLPGGAFLQAVEACERDMGAFTVEALDAAGAGKGPVCDLFAGLGAFTFPVATR 307 Query: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA---KNGFDKVLLDP 364 A+ + A+ GL+ V + + D+ + P N F +LDP Sbjct: 308 ASVTAYEDNAAAVAALSAAAKESKGLKPV----KAIRRDLFRSPLGFQELNAFAAAVLDP 363 Query: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R GA + + + + V +SCNPAT ARD+ L + G+ + RLA D F ++ H+E Sbjct: 364 PREGAEAQARALAQSKIPAAVMLSCNPATFARDAAILAEGGFELTRLAAFDQFRYSAHVE 423 Query: 425 SMVLFSR 431 LF R Sbjct: 424 VAALFRR 430 >UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSE5_SYNAS Length = 429 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 125/433 (28%), Positives = 209/433 (48%), Gaps = 50/433 (11%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q + +++ + G G+ R G +F+P + + E+ +TE ++ YA+ ++ R L SP Sbjct: 27 QKVEITIESVAFGGSGIGRFAGLVIFVPFTVDGDRVEIEITEVRQSYAKGRMCRILKPSP 86 Query: 75 ERETPRCPHFGVCGGCQQQHAS----VDLQQRSKSAALARLMKHD---VSEVIAD-VPWG 126 R P C + CGGCQ QH + +++++ A R+ KH V +VIA +P+ Sbjct: 87 FRTVPECSLYERCGGCQYQHIAYTHQLEIKKNQVIDAFERIGKHPAPPVRDVIASPMPYA 146 Query: 127 YRRRARLSLNYLPKTQQLQ-MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR +A +++ K+ +L +G+++A S IV V +C I+ + L +R L ++ A Sbjct: 147 YRGKAEFHISF--KSGRLPVIGYKEAADSRIVPVSRCAIVDESVNRSLTALRGKLNAISA 204 Query: 186 M-RHLGHVE---LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILET 241 R G E ++ + +G + P S R L ++ Sbjct: 205 AGRRGGKKEERVILWSDTGKAAV----DPGVSGGRGGL------------------VMRP 242 Query: 242 VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 V +M LR F + F Q N+ + MV + + ++ VLD +CG G F+ Sbjct: 243 VKEKM-------LRAPF--QGFFQANSALVGSMVDSVIRACALTGKETVLDAYCGSGLFS 293 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN--GFDK 359 L LA+ A + GV+ V +N G+ N F+ ++ E + + + K D Sbjct: 294 LFLASSARQLFGVDADGEAVHCAAENLSKEGISNAEFFAGDVGE-ILRHTFLKTQQSVDI 352 Query: 360 VLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 V+LDP R G + V++ + L P RI+Y+SCNPAT ARD L +GY + L +DMFP Sbjct: 353 VVLDPPRIGCSSDVLEALKSLGPARIIYISCNPATQARDVRRLRDSGYILRDLQPIDMFP 412 Query: 419 HTGHLESMVLFSR 431 T H+E + L R Sbjct: 413 QTKHIEIVGLLER 425 >UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacillales RepID=B1YK40_EXIS2 Length = 461 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 123/440 (27%), Positives = 204/440 (46%), Gaps = 48/440 (10%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+G+A + +FIPGLL E A++ +TE +A AK+++R SP+R TP CP + C Sbjct: 24 GEGIATLERQIVFIPGLLVGETAQIEITEIHNNFANAKILKRDVRSPDRVTPLCPIYSQC 83 Query: 88 GGCQQQHASVDLQQR----------SKSAALARLMKHDVSEVIADVPWGYRRRARLSLNY 137 GGCQ QH S + Q R +KS L + K D+ I W YR +++ ++ Sbjct: 84 GGCQLQHMSYEGQLRYKEDMVRNAFTKSTKL-NVEKSDIRPTIGTTEWEYRNKSQFAVG- 141 Query: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ-----AMRHLGHV 192 + Q+ G A S+ +V + +C + + + V L + + G + Sbjct: 142 -KEGTQIVSGLYSANSNRLVAIDECIVQNKETLRVNKAVTKILNDYNVPVYNSAKQDGVI 200 Query: 193 ELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL--DLYLAP---------DSEILET 241 + +G T + + F EGL D+Y P + ++ Sbjct: 201 RNIVVRTGI-----KTGEIQVVLVAFKDGFKDLEGLSRDIYDIPGVISVALNINDKMTSR 255 Query: 242 VSGEMPWYDSNGLRLT---------FSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 V GE R+ SPR F Q+N ++M ++ + E+RV+D Sbjct: 256 VFGEQTEILRGVERIEEKMGEFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGEERVVD 315 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 + G+G+ L +A A V G+E V VE + + G + + E + + W Sbjct: 316 AYAGVGSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWIPR--W 373 Query: 353 AKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 K G+ D ++DP R+G ++ +I + +I+YVSCNP TLARD + L+KAGY ++ Sbjct: 374 VKEGWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMKAGYKVS 433 Query: 410 RLAMLDMFPHTGHLESMVLF 429 + DMFP T H+E++V+ Sbjct: 434 YIQPYDMFPQTAHVEAIVVL 453 >UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZT5_DESAS Length = 458 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 135/457 (29%), Positives = 213/457 (46%), Gaps = 51/457 (11%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 II + +ND++ G GV R++G +F+P E T+TE KK +A A +V+ L S Sbjct: 13 IIELQINDINHQGAGVGRYHGFAVFVPFTCVGEIILATITEIKKSFAAASLVKVLKSSDN 72 Query: 76 RETPRCPHFGVCGGCQQQHAS----VDLQQRSKSAALARLMKHDVSEVIADV----PWGY 127 R+ C + CGGCQ QH+S + L+++ L R+ + V+ + PW Y Sbjct: 73 RQIHSCSEYMKCGGCQLQHSSYAEQLKLKEKFVRDNLKRISGLPDAVVLPTIGMENPWNY 132 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVD-VKQCPI-------LAPQLEALLPK---- 175 R + L K + +GF GS +V+ C I ++ LE L+ K Sbjct: 133 RNKIHLHAGR--KNNRTVLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLINKYKLE 190 Query: 176 ----------VRACLGSLQAMRHLGHVELVQAT-SGTLMILRHTAPLSSADREKLERFSH 224 +R + L+ G V LV T SG L S+ RE + + Sbjct: 191 PYNKHSKKGLLRGVM--LRKAEATGQVMLVLVTVSGNL------PGQSTFTRELVNQCPD 242 Query: 225 --SEGLDLYLAPDSEILETVSGEMPWYDS------NGLRLTFSPRDFIQVNAGVNQKMVA 276 S ++ +S +L +V+ ++ W L S F Q+N K+ Sbjct: 243 ITSIIRNINNGNNSLLLGSVN-KLIWGKEIIVDKIKDLSFYISANSFYQINPKQTIKLYD 301 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 +ALE+ +++ + VLD +CG+G + + A V G+E + V+ ++NA LN L NV Sbjct: 302 KALEYAELKGNETVLDAYCGIGTIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNV 361 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLA 395 F +E+ + + N D ++LDP R G V++ I K+ +I+YVSCNP TLA Sbjct: 362 EFLCGEVEKLLPEFAERNNNVDIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLA 421 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 RD L K GY I + +DMFP T H+E S++ Sbjct: 422 RDLGLLDKLGYGIIEVQPVDMFPQTSHIEICTFLSKI 458 >UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10VH2_TRIEI Length = 485 Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 130/482 (26%), Positives = 223/482 (46%), Gaps = 70/482 (14%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q++ +++ DL G GV R++ K +F+P + + +T K +YA K+ + L S Sbjct: 10 QLVEITITDLTDSGDGVGRYDEKVVFVPNTVSGDRLLARLTRVKPKYAYGKMHQLLEGSE 69 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEV---IADVP-WG 126 +R P C CGGCQ QH + Q ++K AL R+ + EV +A V +G Sbjct: 70 QRIKPYCIVADKCGGCQWQHVGYEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTFG 129 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL------ 180 YR + L+ + +++ G+ + GS ++++ QCPI + LL +++ + Sbjct: 130 YRNKVTYPLS-ISNEGEVKAGYYQKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKWK 188 Query: 181 -----GSLQAMRHL--------GHVELVQATSGTLMILRHTAPLSSADREK-LERFSHSE 226 + +RHL G + L +G+ P + +K LE +S Sbjct: 189 IYDEHKRIGILRHLSLKIGEKTGEIILTLVVNGSEENPEKLLPGITVQAQKWLEDYSRLV 248 Query: 227 GLDLYLAPDSEILETVSGEMP------WY---DSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 G + L +S+ T+ G+ +Y +GL +P F QVN +K+V Sbjct: 249 G--VCLNYNSKATNTIFGQQTVCVAGRFYVREKFSGLEFQLTPNTFFQVNTKTTEKLVEI 306 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLAT-------------------------QAASVV 312 ++ L + + ++D +CG+G F L LA + + V+ Sbjct: 307 VIQELALSNSEIIVDAYCGVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVI 366 Query: 313 GVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AG 371 G+E +E+ + NA++N L NV FY +E + P + D VLLDP R G Sbjct: 367 GLEVQGVAIEQAKFNAKINHLTNVHFYEGKVERLL---PQLEVKPDIVLLDPPRKGCDRS 423 Query: 372 VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFS 430 V++ ++++ P RIVY+SC PATLARD + L G Y + ++ +D FP T H+E Sbjct: 424 VLETLLEILPERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLI 483 Query: 431 RV 432 ++ Sbjct: 484 KL 485 >UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Coriobacteriaceae RepID=C8WGH7_EGGLE Length = 461 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 141/454 (31%), Positives = 211/454 (46%), Gaps = 49/454 (10%) Query: 18 TVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 T+++ + + V R +GK +F+ G P + A + + EDK +ARA++ R + S R Sbjct: 18 TITIERMGYGSEAVGRLESGKAVFVEGGAPGDVAALEIVEDKPTFARARIARLVKPSELR 77 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHD---VSEVI-----ADVP 124 PRC CGGC QH S D Q +K +AAL R K E++ + Sbjct: 78 VRPRCEAGAACGGCPWQHLSYDAQLEAKRANVAAALERTAKFGRERAEELVRPCLPSKRQ 137 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPI----LAPQLEALLPKVRACL 180 WGYR + L + + Q+GF + G+ DI CP+ +A +AL +R Sbjct: 138 WGYRNKLELGAA-MDERGTFQLGFHREGAHDIASPGACPLAHDAIAKAPKALRGALRFAQ 196 Query: 181 GS--LQAMR-------HLGHVELVQATSGTLMILRHTAPL--SSADREKLERFSHSEGLD 229 GS L R H G +E+ TS H A S+ + R G Sbjct: 197 GSADLGIFRVGVRHSLHTGDLEVALWTSPGSFPRGHIAKTVKSAVKATSIVRVMADPG-- 254 Query: 230 LYLAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ--- 285 A + +ET+ G+ W + G R S F QVN +K++A +E L + Sbjct: 255 --KARKIKGVETLDGKGCWEEQLGDARYLASAPSFFQVNTAQAEKLIACVIEGLGGRMGE 312 Query: 286 --PE--DRVL--DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 PE D +L DL+ G G F++PLA A V+ VE + V ++NA +N + Sbjct: 313 DGPEGLDDLLIADLYAGGGTFSVPLAQAGAEVLAVEAAGSSVRDLRRNADMNRVD----- 367 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDS 398 E + D ++ G D +++DP RAG A GV++ I P R+ YVSCNPAT ARD Sbjct: 368 LEVIGGDAARELPELGGLDALVVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWARDV 427 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY + + +DMFP T H+E + +F R+ Sbjct: 428 ARFESQGYRLTSVQPVDMFPQTYHVEVVSVFERL 461 >UniRef50_C6QG14 (Uracil-5)-methyltransferase n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QG14_9RHIZ Length = 409 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 130/418 (31%), Positives = 197/418 (47%), Gaps = 24/418 (5%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 + L + G GVA G +F+P L E V AR +++R L SP+R P Sbjct: 9 ITRLGAQGDGVAETTGAPVFVPFALAGERVIADV-----DGARGRLLRILQPSPDRIAPV 63 Query: 81 CPHFGVCGGCQQQHASVDLQQRSK-----SAALARLMKHDVSEVIADVPWGYRRRARLSL 135 C HFG CGGC QH S ++ + K SA AR + V +++ P G RRRA LS Sbjct: 64 CRHFGTCGGCVVQHMSSNVYRAWKRDLVVSAFAARGLDVTVGDLVE--PGGKRRRAVLSA 121 Query: 136 NYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELV 195 + +GF +A S +V + +CP+L P++ A +P ++ + L + LG V Sbjct: 122 ER--SDNGVAIGFHEAQSHALVAIAECPVLDPKIVAAIPALKTLIAPL--ISKLGARLTV 177 Query: 196 QATSGTLMILRHTA--PLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG 253 AT L +L L+ R +L + + L + ++ET+ P+ Sbjct: 178 TATKSGLDVLLDGIERKLTPDVRSRLASEASALQLARLAIGNDIVVETLP---PFLTFAT 234 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 + SP F+Q A +MV R L V V DLFCG+G FT PLA +A + Sbjct: 235 ADVVLSPGCFVQAVAEAETEMVRRILAA--VGKVKSVADLFCGVGAFTFPLAARAKVLAF 292 Query: 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVM 373 PA+ + GL+ +T +L + P N D ++ DP RAGA Sbjct: 293 DGNQPAIAALNAAAKKATGLKPITARVRDLFRE-PLSPLELNEHDAIVFDPPRAGAEAQA 351 Query: 374 QQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 Q++ + + +V SCNPATLARD+ L+ GY I + +D F ++ H+E + +F R Sbjct: 352 QRLARSKVKTVVAASCNPATLARDARHLVDGGYKIESVTPIDQFVYSAHVEVVAVFRR 409 >UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae RepID=A4SRV1_AERS4 Length = 456 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 133/443 (30%), Positives = 213/443 (48%), Gaps = 38/443 (8%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + +L G G R + LF+ GLLP E A V +TE K Y KV L S +R Sbjct: 16 IEILELTDKGDGKGRLFDRPLFVEGLLPGEQALVELTEVKPNYLHGKVTELLQPSADRVA 75 Query: 79 PRCPHFGVCGGCQQQH----ASVDLQQRSKSAAL--ARLMKHDVSEVIA-DVPWGYRRRA 131 CP+ CGGCQ + A + L+Q +AL A L V+ ++ + P+ YR +A Sbjct: 76 DFCPNTE-CGGCQVRPLAYPAQLKLKQALVQSALEQAGLGNTTVNPILGMESPFAYRNKA 134 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL-----GSLQAM 186 + ++ ++ GF + S D++ C + L +VR + + + Sbjct: 135 QYAVRGCEAGAEI--GFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEV 192 Query: 187 RHLGHVELVQA----TSGTLMILRHT------------APLSSADREKLERFSHSEGLDL 230 H G V + SG LM++ T A LS L + + E + Sbjct: 193 NHTGCVRNLMTRKGFKSGELMVVLVTLGEALPFEAELLATLSDLPITTLVQNINDERTNR 252 Query: 231 YLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 L ++ +L GE D + L SP F Q N + + ALE+ ++ + Sbjct: 253 ILGANNRVL---LGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNET 309 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 V D++CG+G +L LA +AA VVG+E V + + ++NA LNG+++ F H E + Sbjct: 310 VFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEF-HVGKAEQLMP 368 Query: 350 QPWAKN-GFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 + +A+ D V++DP R G V+Q ++ + P R+VYVSCNP TLARD L+K G+ Sbjct: 369 ELYAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFM 428 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 + + +DMFPH+ H+E++ S Sbjct: 429 LDEVQPVDMFPHSMHVEAVARLS 451 >UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=5 Tax=Geobacter RepID=Y1452_GEOSL Length = 495 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 126/458 (27%), Positives = 205/458 (44%), Gaps = 55/458 (12%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 +I ++V LD G G+ H+G + + G LP E +T K++ A+ V L+ S Sbjct: 22 LIELAVTALDEDGNGIGTHDGTNVHVIGALPDERVRARLTHVGKRHLHAEAVEVLTPSRA 81 Query: 76 R-ETPRCPHFGVCGGC----QQQHASVDLQQRSKSAALARLMKHDVSEVIADVP----WG 126 R P C G C GC ++ ++ + R +EV+A +P Sbjct: 82 RLAQPSCKRAGSCDGCPLIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLH 141 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA- 185 YR A+L ++ ++ +G + S ++D+ CP+ P + ++ V+ + + Sbjct: 142 YRNSAKLVVS--GTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQ 199 Query: 186 ----------MRHLGHVELVQATSGTLM---------------ILRHTAPLSSADREKLE 220 +R+L V + +GT M + +H ++ Sbjct: 200 VYNPRTGSGLLRYL--VVRISERTGTAMAVFVTVERNYNEIHHLAKHLQQSVPQVEVVVQ 257 Query: 221 RFSHSEG------LDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKM 274 + SEG D +L + E + G +R T SPR F QVN+G + + Sbjct: 258 NVNSSEGNVILGQRDYFLTRQHALTEELGG---------IRFTISPRSFFQVNSGGARII 308 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 +W + ++ V+DL+CG+G L LA A V G+E V A V + NARLN + Sbjct: 309 YETVRQWSSLTGKESVVDLYCGIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIH 368 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPAT 393 N +F + E + + D V+L+P R G AGV+ ++ P RIVYVSC PAT Sbjct: 369 NCSFEAGDAAELIEELVEEGERLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPAT 428 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 LARD + L GY R+ +DMFP T H+E++ L + Sbjct: 429 LARDLDILAGLGYATLRVQPVDMFPQTPHVENIALLVK 466 >UniRef50_B2UQE8 RNA methyltransferase, TrmA family n=4 Tax=Verrucomicrobia RepID=B2UQE8_AKKM8 Length = 407 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 122/430 (28%), Positives = 195/430 (45%), Gaps = 49/430 (11%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 + Q + + ++ L + G G+ R +G +F+P LP + + V + + Y+ A +V ++ Sbjct: 15 SYHQELELDIDALSNAGDGIGRVDGWVVFVPFALPGDRVKARVWRNDRNYSSADLVEVIN 74 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD------VSEVIADVPW 125 SP+R P C FG CGGCQ QH S D Q K+ +A L++ V+ +A P Sbjct: 75 PSPDRVEPGCRLFGTCGGCQYQHFSYDRQLLWKTRQVADLLRLQAGLELPVNPAVAS-PR 133 Query: 126 GYRRRARLSLNY-LPKT-QQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLGS 182 Y R++++ ++ PK + +GF KAGS D+VDV QCPI + LP R + Sbjct: 134 QYHYRSKITPHFDRPKEGGKPAIGFLKAGSRRDVVDVPQCPIAMECINEALPLARKSVYQ 193 Query: 183 LQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETV 242 A G L++A+ GT+ +++ + ER Sbjct: 194 AAARFKRGATILLRASEGTV--------ITNNNAVACERVGD------------------ 227 Query: 243 SGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 L F DF Q N + + + E+ ++D +CG G F L Sbjct: 228 -----------LEFHFLAGDFFQNNPFILPLFTDYVAQQASMDGEEFLVDAYCGSGLFAL 276 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 LA + V+GVE + + NAR NG+++ F + + + V++ Sbjct: 277 SLAKKFKKVLGVEVSETSADWARSNARSNGIEHAEFLAADAGAIFARVDFPAEK-TAVVI 335 Query: 363 DPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 DP R G +A + Q+ P ++VYVSCNPAT RD KAGY + + D+FP T Sbjct: 336 DPPRKGCSAEFLAQLFAFGPGKVVYVSCNPATQIRDLAEFDKAGYFVTAVQPFDLFPQTK 395 Query: 422 HLESMVLFSR 431 HLE +V + Sbjct: 396 HLECVVTLKK 405 >UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desulfobacteraceae RepID=A8ZZY9_DESOH Length = 471 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 214/464 (46%), Gaps = 66/464 (14%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q + + + L G+G+AR +G +F+ LP + +T K +A A+++ LS SP Sbjct: 15 QAVDLEIETLAFGGRGLARVDGLAVFVDHTLPGDRVSARITRKKSNFAEARLLEVLSPSP 74 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVI-ADVPWG 126 R P+CP+ G CGGC+ Q D Q K +A ++H V V+ AD WG Sbjct: 75 FRVLPQCPYCGHCGGCRLQILDYDKQLDCKHEQVADALRHIGLVENVPVHPVMPADPVWG 134 Query: 127 YRRRARLSLN----YLPKTQQLQ-------MGFRKAGS-SDIVDVKQCPILAPQLEALLP 174 YR + S LP+ +++ +G G+ ++DV C +L A+L Sbjct: 135 YRNKMEFSFADRRWLLPEEMEMENIDTSFALGLHVPGTFHKVIDVDACLLLPEPGNAILG 194 Query: 175 KVRACLGSLQAMRHLGHVELVQATSG--TLMILRHTAP---------LSSADREKLERFS 223 VRA + G +++ G ++LRH+ ++ DR L+ + Sbjct: 195 DVRA-YARASGVPAYG----LKSHQGFWRFLMLRHSVAHDNWMVNIVTAAEDRRLLQPLA 249 Query: 224 HSEGLDLYLAPDSEILETVS-----------GEM-------PWYDSNGLRLTF--SPRDF 263 DL E++ V+ GE P+ R +F S F Sbjct: 250 -----DLLADRYPEVVSVVNNITARKAGVAQGEYEILLHGAPFISDRLGRFSFDISANSF 304 Query: 264 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK 323 Q N +++ A E+ + V+DL+CG G + L+ A V+G+E + + Sbjct: 305 FQTNTRGAERLYTVAREYAGLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLAD 364 Query: 324 GQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPI 382 N R N + NV F +++E + P D +++DP RAG V++Q++ + P Sbjct: 365 AVNNCRTNNVSNVRFVAGDVKETL---PRLDCRADVLVIDPPRAGMHKDVVEQVLAMAPP 421 Query: 383 RIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 RIVYVSCNPATLARD A+L YT+A + +DMFPHT H+E + Sbjct: 422 RIVYVSCNPATLARDV-AMLSEAYTVAEVQPVDMFPHTPHIECV 464 >UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaerococcus RepID=C7RGV6_ANAPD Length = 415 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 107/416 (25%), Positives = 205/416 (49%), Gaps = 26/416 (6%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+GV + + K FI G E+ ++ + ++KK + A+ V+ S SP P CP++ C Sbjct: 15 GRGVGKKDSKVYFIEGATFGESCDIEIIKEKKNFIEARKVKTTSQSPYYTQPPCPYYYEC 74 Query: 88 GGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIADVPWGYRRRARLSLNYLPKT 141 GGC + D Q + K + + +K D E+I YR + RL ++ Sbjct: 75 GGCTIMDINYDEQIKLKKNLITKAIKKTCAIEIDDLEIITSETLSYRNKIRLQVD----- 129 Query: 142 QQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGH-VELVQATSG 200 ++ ++ + K S+D+V++K C + + L K++ + ++ ++ LG+ + + S Sbjct: 130 KKGRLSYNKKSSNDLVEIKDCLLANEHIIENLGKIQNLVTTI--VKDLGNIIREISIRSN 187 Query: 201 TLMILRHTAPLSSADREKLERFSHSEGLDL---YLAPDSEILETVSGEMPWYDSNGLRLT 257 + IL + + S + EKL ++ DL + + ++T+ + + Sbjct: 188 SCEILLN---IYSKEEEKLYKYLKENHKDLPYNINIINKKKIKTLGKDHLIFKVKDKSFK 244 Query: 258 FSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 S DF QVN + + A ++L + ++LDLFCG G +A ++VG+E Sbjct: 245 VSKDDFYQVNDYQIENLYQNARKYL--EKNKKLLDLFCGSG--ISSIALNDDNIVGIEIN 300 Query: 318 PALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQI 376 + ++ ++NA++N L + F +N + ++ K V +DP RAG +++ + Sbjct: 301 KSAIKDAKENAKINNLTDYKFIDKNANY-IDQKFIEKEKIQTVTVDPPRAGLDKEIIKTL 359 Query: 377 IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 K + I+Y+SCNP TLARD + + GY + + +DMFP T H+E++ L ++ Sbjct: 360 AKTKIKNIIYISCNPQTLARDIKRFMDRGYELKEIKAVDMFPQTMHVEAIALIQKM 415 >UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptococcus uberis 0140J RepID=B9DV28_STRU0 Length = 451 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 120/451 (26%), Positives = 211/451 (46%), Gaps = 40/451 (8%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 +Q I + + + G+G+ + +F+PG L E +T K+ +A AK+++ S Sbjct: 7 KQKIPLKIKRMGINGEGIGFYQKTLIFVPGALKGEEIFCQITSVKRNFAEAKLLKINKAS 66 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---------HDVSEVIA-DV 123 R P+CP F CGGCQ H + Q K + + +K + + I D Sbjct: 67 KNRVVPQCPIFDSCGGCQIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDN 126 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPI-------LAPQLEALLPKV 176 PW Y RA+L + ++ G GS ++ + C + + + LL + Sbjct: 127 PWHY--RAKLQFQTRSFSGKVVAGLYAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQY 184 Query: 177 RACLGSLQAMRHLGHVELVQA-TSGTLMILR------HTAPLSSADREKLERFSHSEGLD 229 + + + + + L + + +A S TL I+ H AP+ D K + L+ Sbjct: 185 KIPIYNERKIEGLRTIMIRKAIASQTLQIIFITSKEVHLAPI-ILDMTKTYPEIKTVALN 243 Query: 230 LYLAPDSEILETVSGEMPWYDSN------GLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + + SE+ + E+ W SPR F Q+N + A+ +E L+ Sbjct: 244 INRSKSSELYGDKT-EIIWGQDTIEEEVLDYHFALSPRAFYQLNPKQTSVLYAQVVEALE 302 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 V D ++D +CG+G A + S+ G++ +P +E ++NA+ G +N T+Y Sbjct: 303 VSESDHIIDAYCGVGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFEN-TYYECGK 361 Query: 344 EEDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 ED+ + W ++G+ D +++DP R G +++ I+ +P ++VYVSCN +TLARD Sbjct: 362 AEDIIPK-WYQDGYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVE 420 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L K YT+ + +DMFPHT E++V R Sbjct: 421 LSKV-YTVDYIQSVDMFPHTARTEAVVKLRR 450 >UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDX4_CLOTS Length = 452 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 209/456 (45%), Gaps = 61/456 (13%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 ++++ GQGV R +G +F+ G L E + E K Y A V + L S ER P+ Sbjct: 14 IDNMAHEGQGVGRLDGIAVFVRGALKGERVLAKIDEKHKNYLNAHVEKILLPSQERIMPK 73 Query: 81 CPHFGVCGGCQQQHAS----VDLQQRSKSAALARLMKHD--VSEVIA-DVPWGYRRRARL 133 C + G CGGC QH S ++ +++ +L+R+ K + V + I D P YR +A Sbjct: 74 CIYAGKCGGCTLQHLSYKGQLEFKKQVVDDSLSRIGKINTIVYDTIGMDNPLYYRDKAEY 133 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQ------------------------- 168 + + ++ GF + S +I+ + C I + Sbjct: 134 PVGI--EDGNIKSGFYASKSHNIIAIDSCMIQSDYSIEAMKTVREWANNYKISIFDEKSG 191 Query: 169 ---LEALLPKVRACLGSLQAMRHLGHV------ELVQATSGTLMILRHTAPLSSADREKL 219 L ++ KV + + + + EL+ + L+ + R +L Sbjct: 192 NGLLRYIITKVGFSTKEVMVILVINGIDIPYKDELINTLKKNIKELKSVVLNINKSRSRL 251 Query: 220 ERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 SE + +Y D I + + + + SP F QVN + + +AL Sbjct: 252 --VMGSENIVIY--GDGYITDYIGDK---------KFEISPLSFFQVNPIQTKVLYEKAL 298 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 E+ D++ ++ V+D++CG+G ++ A V G+E V VE ++NA +NG+ N F Sbjct: 299 EYADLKGDEIVIDVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFI 358 Query: 340 HENLEEDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLAR 396 E V K+ + K G D ++LDP R G V+ + +K+ P +I+Y+SCNP TLAR Sbjct: 359 AGKAEH-VMKRLY-KEGLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLAR 416 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 D GY ++ +DMFP+T H+E +VL SR+ Sbjct: 417 DLRIFEDNGYKTEKVQPVDMFPYTYHVECVVLMSRL 452 >UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus RepID=A8YU02_LACH4 Length = 450 Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 124/452 (27%), Positives = 214/452 (47%), Gaps = 40/452 (8%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 QII + + DL GVA +NG T+F+ LP E + + KK +A AK+ + +SP Sbjct: 5 QIIDLEITDLSYEAMGVAHYNGMTVFVTNALPGEVVSAKILKVKKNFAFAKIEKIKKESP 64 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIAD-VPWGY 127 +R + G H D Q K + L+K +V E +A GY Sbjct: 65 DRVNVKLNQGVQSGLASLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGY 124 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA-- 185 R +A++ + + QL++GF + S D++ + P+++ +L VR L + Sbjct: 125 RNKAQVPVREV--NGQLEIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPA 182 Query: 186 ---MRHLGHVELVQA----TSGTLMILR-------HTAPLSSADREKLERFS------HS 225 + + G V ++ ++G +M++ P +A+ ++ S + Sbjct: 183 YDEINNNGEVRYLEVRRSKSTGEMMVILVCLHKDFMQLPNVAAEVSQIPGVSGLILNHNP 242 Query: 226 EGLDLYLAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + ++ L P + V G D G L+ SP+ F Q+N+ ++ A++ D+ Sbjct: 243 KKTNVILGPKDYL---VFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADL 299 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 +P+D V+D + G+G L +A +V G+E V ++ + NA+LN + N +Y E Sbjct: 300 KPDDVVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAE 359 Query: 345 EDVTKQPWAKNGF--DKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E + + WAK+G D V +DP R G + +K P +IVY+SCNPATL RD + Sbjct: 360 EIMPR--WAKSGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLF 417 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 + Y R+ +DMFP T H+ES+ + R + Sbjct: 418 QEKSYEFNRIDPVDMFPQTPHVESVTVLERTE 449 >UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n=84 Tax=Bacillales RepID=Y542_BACC1 Length = 459 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 122/458 (26%), Positives = 205/458 (44%), Gaps = 54/458 (11%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q V++ L G+GV + +FIPG LP E T+ ++ +A AKV + SP Sbjct: 14 QTFPVTIKRLGINGEGVGYFKRQVVFIPGALPGEEVVAETTKIQRGFAEAKVKKVRKASP 73 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVI-----ADVPW 125 R CP + CGGCQ QH Q K A + M + + E I + PW Sbjct: 74 HRVKAPCPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPW 133 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR +++L + K +++ G K S ++D+ C I VR L L Sbjct: 134 HYRNKSQLQVGR--KDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNV 191 Query: 186 -----MRHLGHVELV----QATSGTLMILRHTAPLSSADREKL----------------- 219 + G V + +G + + T ++E+ Sbjct: 192 SIYNEKKQKGLVRTIVTRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQN 251 Query: 220 ---ERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA 276 + S G + E+++ G+ L S R F Q+N + Sbjct: 252 VNWRKTSVIFGDKTFKLAGKEVIQETLGD--------LSFELSARAFFQLNPEQTVVLYN 303 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 A + + ++++D +CG+G L LA AA V G++ +P + ++NA+ +G N Sbjct: 304 EAKKAAALTGNEKIVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNT 363 Query: 337 TFYHENLEEDVTKQPWAKNGF--DKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPAT 393 + E+ + K W K G+ D +++DP R G +++ I+K++P ++VYVSCNP++ Sbjct: 364 KYEAGKAEQWLPK--WVKEGWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSS 421 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 LARD +AL+K+ Y + + +DMFPHT H+E++V R Sbjct: 422 LARDVQALMKS-YEVEYVQPVDMFPHTAHVENVVKLVR 458 >UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y248_PARUW Length = 434 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 113/419 (26%), Positives = 197/419 (47%), Gaps = 20/419 (4%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G G+ R++G +F+P P + + E KK +A A++V+ S R P CP+FG C Sbjct: 22 GAGILRYHGFVIFVPFTAPGDQIICRIIEIKKSFAVAELVKLKQPSSLRVQPPCPYFGKC 81 Query: 88 GGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGYRRRARLSLNYLPK 140 GGCQ QH + Q K A+ +K V A + W YRR L L Sbjct: 82 GGCQLQHLNEQTQLNYKLTAITDTLKRIGHLKVPSVEMNTAQLNWAYRRHITLHLKSF-- 139 Query: 141 TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL-QAMRHLGHVELVQATS 199 Q Q G+ ++ + CPI + ++ ++ + +L + G + L++ + Sbjct: 140 NQSFQAGYIATDHFSLISIDTCPIFNNLHDPIISILQKFISTLPNPNQQDGRLTLLKNQN 199 Query: 200 GTLMILRHTAPLSSADR----EKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLR 255 ++ L+ +R E LE++ G+ L +P + + + L Sbjct: 200 SQYILSFQFCSLNELNRILFQEALEKYPIFSGI-LVTSPKKQWI--IGNPYSEQKIENLI 256 Query: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQ-PEDRVLDLFCGMGNFTLPLATQAASVVGV 314 F+P+ FIQ N + + + L +Q ++LDL+CG G +L LA+Q V G+ Sbjct: 257 FRFTPQAFIQ-NHPEQSLYIYKKICSLTIQLKSKKILDLYCGFGITSLLLASQGHFVTGI 315 Query: 315 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVM 373 E + ++N++LN L +V F ++E+ + ++ D V+++P R G + V+ Sbjct: 316 EYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQKCVDLVIVNPPRIGLSKSVI 375 Query: 374 QQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + ++ P ++Y+SC P+TLARD L + Y I DMFP T H+E++V +V Sbjct: 376 KILMSALPEDMIYISCMPSTLARDLSILCEDLYEIHECTAYDMFPQTSHVETLVHLKKV 434 >UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevotella RepID=C9Q1J0_9BACT Length = 502 Score = 164 bits (414), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 138/480 (28%), Positives = 226/480 (47%), Gaps = 61/480 (12%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 Y A++R + V++ D+ + G+ +AR N +F+P ++P + ++ + + K Y A Sbjct: 29 YMARKRKDFPILENVTITDVAAEGKALARVNDMVVFVPFVVPGDVVDLKIRKKKHSYCEA 88 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP 124 +VVR + S R P C HFGVCGGC+ Q+ + Q R+K + + +S V +P Sbjct: 89 EVVRFVQYSDTRVEPVCQHFGVCGGCKWQNLPYEEQLRAKQQQVYDQLSR-ISHV--QLP 145 Query: 125 WGYR-RRARLSLNYLPKTQ----------------------QLQMGFRKAGSSD-IVDVK 160 Y ++L+L+Y K + +GF G+ D I+ ++ Sbjct: 146 TFYPIMGSQLTLHYRNKLEFGCSNKRWLTREEVASGATFDTMNAIGFHITGAFDKILPIE 205 Query: 161 QCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQAT------------SGTLMILRHT 208 +C ++ + L ++R + + + +L Q T +G M+L Sbjct: 206 KCWLM----DDLQNQIRNEIRDYALTKGISFFDLRQQTGLLRDVMIRNSDTGEWMVLVQF 261 Query: 209 APLSSADREKLERF-----SHSEGLDLYLAPDSEILETVSGEMPW--YDSNG-------- 253 ++ D++ E H + L D++ G++P + NG Sbjct: 262 HFETATDQQTAEALLAHVGEHFPQITSLLWVDNQKCNDTFGDLPVHVFKGNGHIFEVMED 321 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 LR P+ F Q N + A + + + V DL+ G G +A QA VVG Sbjct: 322 LRFKVGPKSFYQTNTQQAYHLYDVARRFASLSGTETVYDLYTGTGTIANFVARQAKKVVG 381 Query: 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPARAGA-AG 371 VE VP +E + N+ LNG+ N TFY ++++ + + A NG D ++ DP RAG A Sbjct: 382 VEYVPEAIEDAKVNSELNGISNTTFYAGDMKDILNDEFIANNGQPDVIITDPPRAGMHAD 441 Query: 372 VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 V++ II+ P RIVYVSCNPAT ARD A L Y + + +DMFPHT H+E++VL R Sbjct: 442 VIETIIRANPQRIVYVSCNPATQARDLIA-LDERYAVTAVQPVDMFPHTPHVENVVLLER 500 >UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I245_DESAP Length = 465 Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 140/451 (31%), Positives = 218/451 (48%), Gaps = 42/451 (9%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + L G+GV R G +F+P ++P E V +T + +AR ++V L S R Sbjct: 15 IEITGLSHVGEGVGRRQGLVMFVPLVVPGERVRVEITAVGRTFARGRLVEVLERSRTRVE 74 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEV-IADV-----PWGYR 128 P C FG CGGC H Q R K+ AL RL + EV +A+ P YR Sbjct: 75 PGCALFGDCGGCHLLHIDYPEQLRWKTVQVRDALTRL--GGLGEVPVANTLGMNEPRHYR 132 Query: 129 RRA---------RLSLNYLPKTQQLQMGFRKA--GSSDIVDVKQCPILAPQLEALLPKVR 177 +A RL+L +L + F A GS ++ + +A + ALL +R Sbjct: 133 NKAHFHVSRDSGRLALGFLARGSHRVTCFVDADGGSGCLLVQRDLLRVAARAAALLESLR 192 Query: 178 ACLGSLQAMR-HLGHVELVQAT-SGTLMILRHTAPLS-SADREKLERFSHSEGLDLYLAP 234 L + R +L ++ L +A +G +M++ T + +RE ER + E + + Sbjct: 193 VPLYDWETQRGYLRNLLLRRAAATGEIMLVLVTGRQNWPGEREFAERLTAEEPGVVSVIR 252 Query: 235 DSEILETV----------SGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + LET +GE + GL+ P F QVN +K A + Sbjct: 253 NVNALETRELLGPENRVRAGEPAITEHLGGLKFRIGPASFFQVNPEQAEKTYEIARLFAG 312 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + ++ V+D + G+G L LA++A SV+G E +PA V Q+NA NG++NV F + Sbjct: 313 LTGKETVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGAV 372 Query: 344 EEDVTKQPWAKNG--FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 E+ + + WA G D +LDP R G ++ + +L P R+VYVSC PATLARD Sbjct: 373 EDLLPE--WAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAPATLARDLGR 430 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L + G+ + ++ +DMFP T H+E +V +R Sbjct: 431 LAELGFDVVKVQPVDMFPQTSHIECVVSLTR 461 >UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTB6_SYNR3 Length = 455 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 218/451 (48%), Gaps = 49/451 (10%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 +T+ + DL G G+A+H+GK +F+ G LP E A V +T + ++ SP+R Sbjct: 11 LTLEIKDLALDGTGLAQHDGKLVFVSGALPAETATVRITGQGRGKLHGEISELTCSSPDR 70 Query: 77 ETPRCPHFGVCGGCQ----QQHASVDLQQRSKSAALARLMKHD-VSEVI--ADVPWGYRR 129 P C G CGGC Q A + +Q+ L R+ + + + E I GYR Sbjct: 71 RDPVCILAGKCGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRN 130 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 RA + + + L+ GF + GS +V++ CP+L P+L+AL+ ++A LQA Sbjct: 131 RAIIPVQE--RDNSLKAGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKA---DLQAAGWP 185 Query: 190 GHVELVQATSGTLMILRHTAPLSSAD-------------------REKLERFSHSEG--L 228 + E Q ++LR A +SS + + ++R+ G L Sbjct: 186 IYNEDTQKGLLRQLVLR--AGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVGVVL 243 Query: 229 DLYLAPDSEIL---ETVSGEMPWYDSN--GLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 ++ P + +L E + PW + G R F QV+ + +V L Sbjct: 244 NVQPKPGNTLLGPKERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRSELQ 303 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 +Q + ++D +CG+G LPL + ++G+E +E+ Q NA LNGL++ F+ ++ Sbjct: 304 LQSGEVLVDAYCGVGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSV 363 Query: 344 EEDVTK-QPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E + + P+ D +LLDP R G A V + I + P R+ YVSCNPATLARD AL Sbjct: 364 ERRLQEFLPFT----DVLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDL-AL 418 Query: 402 LKAG--YTIARLAMLDMFPHTGHLESMVLFS 430 L A + + ++ D FP T H+E+M + + Sbjct: 419 LCADQRFELTKVVPFDFFPQTTHIEAMAILT 449 >UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDT6_THET1 Length = 405 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 121/434 (27%), Positives = 202/434 (46%), Gaps = 70/434 (16%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 T+ Q + + ++D+ G+ + RH G +F+P +P E + K+YA A+++ + Sbjct: 18 TSIDQTVDLELHDMAHGGRALGRHEGMVVFVPFGIPGERVLARIYHKHKRYAEAEIIDII 77 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP-- 124 + S +R P+CP+FGVCGGC QH D Q K + L+R+ +V+ +P Sbjct: 78 TPSQDRVIPKCPYFGVCGGCHYQHIRYDRQLEIKRHIVESLLSRIGGFRDIKVLPTIPSP 137 Query: 125 --WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 + YR AR QQ +GF S+ + V CPI+ ++ +L ++ Sbjct: 138 REYYYRNSARFLCG-----QQGDLGFTDWRSNSFIKVDTCPIMDEKINEVLQHIQ----- 187 Query: 183 LQAMRHLGHVELVQATSGTLMILRHTA--------PLSSADREKLERFSHSEGLDLYLAP 234 GH G + +R++ P S D E ++F H++ L Sbjct: 188 -------GH-----GLPGENVRVRYSRQKDELVIWPKLSVDLETGQQF-HTQVL------ 228 Query: 235 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 G S F QVN + ++ AL+ L+ V+D + Sbjct: 229 -----------------LGREFRVSATSFFQVNTLQAENLIRIALDELEPLEGKTVVDAY 271 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 CG+G FT +A +A +G+E P+ + N + GL+ E+++ + P Sbjct: 272 CGVGTFTRFIAERAELTIGIEESPSATADFRYN--MQGLK-AKLIEGRAEKELGRLP--- 325 Query: 355 NGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLA 412 N D++LLDP R G ++ I++L P +IVYVSC+PATLARD + L G Y + ++ Sbjct: 326 NNIDRLLLDPPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKKVQ 385 Query: 413 MLDMFPHTGHLESM 426 +DMFP T H+E++ Sbjct: 386 PVDMFPQTFHIETI 399 >UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHU9_9CLOT Length = 467 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 137/452 (30%), Positives = 217/452 (48%), Gaps = 51/452 (11%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 QI + + DL+S G GV + +G +F+P + E + + KQYA V R LS SP Sbjct: 18 QIHRLEITDLNSDGNGVGKIDGFVVFVPMTAVGDLIEAKIVKVLKQYAFGIVERILSLSP 77 Query: 75 ERETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVS-EVIADVPW--GY 127 +R CP + CGGC +H A +D+++R A R+ D++ E I P GY Sbjct: 78 DRIDNDCPVYRQCGGCSLRHIRYEAELDIKRRQVEACFRRIGGIDLTVERILSNPHTEGY 137 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R +A+ + + + GF S +V C + +P A P VR L + Sbjct: 138 RNKAQFPVAL--RDGKAVAGFYAKRSHRVVPCGDCRLQSP---AFAPLVRVILDFIDEY- 191 Query: 188 HL------GHVELVQ--------ATSGTLMILRHTAP-LSSADREKLERF---------- 222 HL H L++ AT ++ L T + SAD E R Sbjct: 192 HLPPYDETNHTGLIRNLYLREAPATGEIMVCLVATKKHIPSAD-ELARRLVACNPKVKSV 250 Query: 223 ---SHSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARA 278 +S+ ++ L + V G+ +D G+ + SP F QVN+ +++ A Sbjct: 251 LVNRNSQKTNVILGDRCSV---VWGKPVIHDVLRGVDVELSPLSFYQVNSLQAERLYDLA 307 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 E+ + E+ ++DL+CG G L +A +A V+GVE +P VE +++A+ NG++N F Sbjct: 308 EEYAHLTGEETLVDLYCGAGTIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEF 367 Query: 339 YHENLEEDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLA 395 + +E + A+ G D V++DP R G A V+Q I ++ P RIV +SCNPAT A Sbjct: 368 LCADAKE--AARSLAQQGLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAA 425 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 RD L + GY + +A D+F T H+E ++ Sbjct: 426 RDCGLLQQQGYRVEEVAAADLFSRTLHVECVI 457 >UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E02 Length = 456 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 128/447 (28%), Positives = 200/447 (44%), Gaps = 39/447 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + ++++DL G GVARH G LF+ G +P + VT+ K+ Y A V L SP+R Sbjct: 18 LELTIDDLAFGGNGVARHEGYVLFVHGAIPGDRVRAKVTKTKRDYGEAITVDVLEPSPDR 77 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP----WGYRRRAR 132 P H G ++++ + AL R+ K E+ VP W YR + Sbjct: 78 IAPVADHPGAPWQILPYERQLEIKSKQVDDALRRIGKLGGFELEPIVPALETWRYRNKLE 137 Query: 133 LSLNYLPKTQ--QLQMGFRKAGSSD-IVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 S + +L GF G D IV + C + + + A+ +V L R Sbjct: 138 YSFGTEGTAERGELIFGFHAPGEWDRIVPIADCMLASERGNAVRDQV------LAFCREQ 191 Query: 190 GHVELVQAT---------------SGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 G + T +G + T P DRE +GL L+ Sbjct: 192 GLTAYDRRTRRGFLRNCVIREGRRTGQFQVRLVTMP-GELDREAFAEAVDCDGL-LWTQF 249 Query: 235 DSEILETVSGEMPWY--------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQP 286 D T G+ + NG+ SP F QVN + +K+ A A ++ + Sbjct: 250 DGLGETTAEGDTELIAGSDYLEEELNGMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAG 309 Query: 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 +R+ DL+CG+G L +A +A + G+E + + NARLN + N F+ ++ Sbjct: 310 FERLYDLYCGIGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFAGDVRTA 369 Query: 347 VTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG 405 + D V++DP RAG + V+++II P R+VY+SCNP TLA + L +AG Sbjct: 370 LRLLVDTAGSPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGAQLAEAG 429 Query: 406 YTIARLAMLDMFPHTGHLESMVLFSRV 432 Y + ++ +DMFP T H+E + LF RV Sbjct: 430 YVLRKVRPVDMFPQTPHIECVALFERV 456 >UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEY8_SYNFM Length = 488 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 132/463 (28%), Positives = 208/463 (44%), Gaps = 70/463 (15%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+ +AR G +F+ +P + +T K+QY A+VV LS S P CPHFGVC Sbjct: 35 GKALARVEGLVVFMDHAVPGQRVRALITRKKRQYCEARVVEVLSQSEAHTEPVCPHFGVC 94 Query: 88 GGCQQQHASVDLQQRSKSAALARLMKHDVS----EVIADVPWG----YRRRARLSLN--- 136 GGCQ Q + + Q + K +A ++H ++ A VP YR + + + Sbjct: 95 GGCQWQDIAYEEQLKWKRVQVADSLEHLAGAQGVKIEAAVPSDRLIHYRNKMEFTFSDRR 154 Query: 137 YLPKTQQLQMGFRKAGS-----------SDIVDVKQCPILAPQLEALLPKVR-ACLGS-- 182 +L + G R A + + +V+ C + + + ++ + R C GS Sbjct: 155 WLTPEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAEAVEIVKETRDWCRGSGV 214 Query: 183 ----LQAMRHLGHVELVQA---TSGTLMIL------RHTAPLSSADREKLERFSHSEGLD 229 +++ R +++ T TL+ L H A +++ R + RF H Sbjct: 215 PAYGIKSQRGFWRFLVIREGKRTGQTLLHLVTSDQPEHEAAVNTLTRHLVSRFPHI---- 270 Query: 230 LYLAPDSEILETVS---GEMPWYDSN--------------GLRLTFSPRDFIQVNAGVNQ 272 + ++ +VS ++ + D + GLR S F Q N + Sbjct: 271 ------TTVVHSVSRKKAQVAFGDQSRVVAGPGVIEERLGGLRFRISAESFFQTNPFSAE 324 Query: 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG 332 K+ Q + V DL+CG G+ L +A + A VVG E V +E NARLNG Sbjct: 325 KLYDEVSRLAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNG 384 Query: 333 LQNVTFYHENLEEDVTKQPWAKNGF---DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVS 388 ++N F +L+E + +G D V+ DP RAG V+ ++++ P RI+YVS Sbjct: 385 IENARFISGDLKERINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGPGRIIYVS 444 Query: 389 CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 CNPATLARD A Y I + D+FPHT H+E +V R Sbjct: 445 CNPATLARDL-AFFTERYEIGTVRPFDLFPHTPHIECVVRMDR 486 >UniRef50_A9HRW8 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Acetobacteraceae RepID=A9HRW8_GLUDA Length = 426 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 132/432 (30%), Positives = 201/432 (46%), Gaps = 36/432 (8%) Query: 17 ITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I + L + G G+AR G LFIPG LP E+ V D+ A + L SP+ Sbjct: 3 IEADIALLGTDGDGIARTAEGDRLFIPGALPGEH----VLADRVDERTAHLTSILRPSPD 58 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD---VSEVIADV--PWGYRRR 130 R TP CP FG CGGC QH S+ K+ + ++ + V P G RRR Sbjct: 59 RVTPPCPLFGTCGGCAIQHLSLAAALDWKAGLVVHALERAGFAAPAITGTVQSPPGSRRR 118 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 L++ P+ + + R+ D+VD+ CP+L P L ALLP +RA + SL A+R G Sbjct: 119 IDLAVRRRPEGVCIGLHARR---GDVVDLTACPVLEPALFALLPALRAVMQSLGALRRDG 175 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL---APDSEILETVSGEMP 247 + SG ++L PL +ADR KL F+ + A +++ ET + Sbjct: 176 DALINMLDSGPDLLLATDGPLEAADRAKLASFARDHRIPRIAWRRAGTTDVPETAAQTAS 235 Query: 248 W-YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD--VQPEDRVLDLFCGMGNFTLPL 304 ++ +G+ P F+Q ++A L L + +D V++L+ G G + L Sbjct: 236 VRHELSGVATMPPPGAFLQPTREGEAAIIAAVLAGLPRRLVRKDTVIELYAGCGTLSFAL 295 Query: 305 ATQAASVVGVEGVP---ALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP-WAKNGFDK- 359 Q + EG P A + + R+ Q D+ +QP A+ D Sbjct: 296 G-QHVRTLAFEGQPDAVATLRRATTGTRVVAEQR----------DLNRQPVMARQIADAR 344 Query: 360 -VLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 V+LDP GA M +I+ P RIVYVSCNP L RD+ L AGY + + ++D F Sbjct: 345 AVVLDPPYTGAGAQMAEIVAGRPERIVYVSCNPQALGRDAAGLQAAGYRLDGVTIIDQFL 404 Query: 419 HTGHLESMVLFS 430 + +E++ +F+ Sbjct: 405 WSTEVEAVCVFT 416 >UniRef50_C8PMC8 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PMC8_9SPIO Length = 380 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 123/413 (29%), Positives = 190/413 (46%), Gaps = 57/413 (13%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+ +AR +GKT+FIP LP E ++TVTE+++ Y+ A + + ++ SP R P CP+FG C Sbjct: 12 GKALARIDGKTVFIPFALPDEELDITVTENRRDYSEAVIKKVVTPSPHRIEPPCPYFGQC 71 Query: 88 GGCQQQHASVDLQQRSKSAALARLMKH-----DVSEVIADVP-WGYRRRARLSLNYLPKT 141 GGC Q A QQ + A +A L + S V P W YR R + ++ Sbjct: 72 GGCNLQMADDAYQQSLRQAMVAELFTRAHVTPERSPVFTAGPSWEYRNRFQFHVD----- 126 Query: 142 QQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGT 201 + +G S+ +V V+ CPI P L ++L + G LQ + Sbjct: 127 KNGTIGMHGFASNTVVPVRDCPIAVPALRSVLQQ-----GGLQKL--------------- 166 Query: 202 LMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPR 261 H+ + D+++ F+ A S IL S + L FS Sbjct: 167 ---FPHSKKI---DKDRYHVFAQD-------AVYSPILPGASARV-----KDTVLNFSVF 208 Query: 262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321 F Q N V +K++ D+ R+LD + G+G F+ L +AA + VE + Sbjct: 209 GFFQSNIAVLEKLIEPV---ADLPSCTRILDFYAGVGTFSAFLTEKAAELHLVEHNERAL 265 Query: 322 EKGQQNA-RLNGLQNVT---FYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQI 376 QQN R+ +N + F+H + P AK +D V++DP R G + V+ + Sbjct: 266 LAAQQNLDRIIAEKNSSCRCFFHTVSDAGWPDIPAAKLKYDAVIIDPPRQGVHSRVLTYL 325 Query: 377 IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 + + RI YVSCNPAT RD++ L GY + D +P T H E + +F Sbjct: 326 GQAKIPRIHYVSCNPATFVRDAKKLTSLGYRFTEYRLFDFYPQTHHCELLGIF 378 >UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3384C Length = 448 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 121/439 (27%), Positives = 211/439 (48%), Gaps = 39/439 (8%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 +I +++ D+++ G+GV + GKT+F+P + + V + K++YA K+ + + Sbjct: 5 NNNLIKLNIVDINNDGEGVGKFEGKTIFVPNTVTGDVVLVQLNFIKQKYAYGKIKKIIHS 64 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQ----QRSKSAALARLMKHDVSEVIADVP---- 124 SP R P C CGGCQ QH S + Q Q +L R+ + V+ + Sbjct: 65 SPYRIRPSCIVADKCGGCQWQHISPEYQLYIKQNKIIQSLQRIGRFKDVFVLPILSSSQI 124 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR------- 177 +GYR +A L Y K + G+ + S ++++ QCPI +L + L +++ Sbjct: 125 FGYRNKATYPLGY-SKFGNVNAGYYQRYSHKLINLNQCPIQDSRLNSFLAEIKVDIEKQG 183 Query: 178 -ACLGSLQAMRHLGHVELV--QATSGTLMILRHTAPLSSADREK----LERFSHSEGLDL 230 + HL H+ L Q + L+ L T + +E+ LER+ + G+ Sbjct: 184 WSIYNEKTYQGHLRHLALRIGQNSGEVLLTLISTTGNITKIKEQAKLWLERYPNLVGV-- 241 Query: 231 YLAPDSEILETVSGEM-------PWYDSNGLRLTFS--PRDFIQVNAGVNQKMVARALEW 281 + +SE + G P+ + F P F QVNA + ++ L+ Sbjct: 242 LVNKNSEKNNKIFGNQTFSIVGKPFLKERFFNIDFKLRPDTFFQVNAQSAETLLHSLLDN 301 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 L + +++++D +CG+G FTLPLA + + +G+E +E+ + NA LN + NV FY Sbjct: 302 LILTGKEKIVDAYCGIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQG 361 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 +++ + P D VLLDP R G V++ + ++ P I+Y+SC P+TLARD + Sbjct: 362 AVKDIL---PTLNIFPDIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLKK 418 Query: 401 LLKAG-YTIARLAMLDMFP 418 + Y I + +D FP Sbjct: 419 ICYQNLYKILWVQPVDFFP 437 >UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR99_9BACE Length = 454 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 128/434 (29%), Positives = 204/434 (47%), Gaps = 34/434 (7%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G GVAR +G +F+ G + E +V + + + +VVR SP R P+C H+ C Sbjct: 23 GAGVARLDGIVVFVQGGVRGEECDVRIEKVGRTNLFGRVVRVFQPSPARIMPQCIHYTKC 82 Query: 88 GGCQ--QQHASVDLQQRSKSA--ALARLMKHDVS-EVIADVPWGYRRRARLSLNYLPKTQ 142 GGCQ Q + + +L+ + L R+ DV+ VI R R ++ P + Sbjct: 83 GGCQFRQMNYAEELEAKRIRVEDCLQRIAGLDVTVPVIHGAKDTRRYRNKVQFPVQPGPE 142 Query: 143 QLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ--------------AMRH 188 ++GF + + ++ V+ C +L P+ A L A + +Q +RH Sbjct: 143 GPRVGFYRQRTHQVISVEDC-LLQPETAARLRA--AAVSWMQWHNISAYDEKTGRGLVRH 199 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL-DLYLAPDSEILETVSGE-- 245 + +V + +A + +L + + D + GL + L + + + G+ Sbjct: 200 V-YVRVNRAGQSLVCLLVNGKSVPQEDALVQALRNVEPGLVGVVLGVNEKKNNVILGDSY 258 Query: 246 -----MPWYDSNGLRLTF--SPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 W + TF S F QVNA + + RAL++ + + VLDL+CG+G Sbjct: 259 RTLWGQDWLEDTLCGFTFRLSVPSFYQVNANQAEVLYGRALDFAGLTGRETVLDLYCGIG 318 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 +L +A QA V G E VP VE ++NA NG+ N F + E D Sbjct: 319 TISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGDAGEAARALAARGVKPD 378 Query: 359 KVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 V +DP R G A V+ I+ + P R+VYVSC+PATLARD + + GY + + +DMF Sbjct: 379 VVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRFVSLGYVLRKAEAVDMF 438 Query: 418 PHTGHLESMVLFSR 431 P T H+ES+VL +R Sbjct: 439 PRTAHVESVVLLTR 452 >UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GDX8_PHATR Length = 378 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 122/409 (29%), Positives = 192/409 (46%), Gaps = 56/409 (13%) Query: 39 LFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVD 98 + +P ++P E V V + Y+ A +V L SP+R P CP CGGCQ QH S++ Sbjct: 4 VMVPNVIPGERVRVAVFRNFNNYSEADLVTVLEPSPDRVVPHCPLAADCGGCQLQHVSIE 63 Query: 99 LQQRSKSAALAR-LMKHDVSEVI------ADVPWGYRRRARLSLNYLPKTQQLQMGFRKA 151 Q+R K+ + L ++ +++V D +GYR ++L+ +Y +Q +GF+K Sbjct: 64 SQRRWKTTLVQEGLAQYGLTDVTVAPTLGTDQTYGYR--SKLTPHYDAPAKQ-PIGFQKM 120 Query: 152 GSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPL 211 S I++V+ CPI P + A + R L S + R G ++ R Sbjct: 121 TSRKIINVETCPIATPAINAKYQQTRQELMSQPSKRK----------KGATLLFRQ---- 166 Query: 212 SSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVN 271 +AD + +E +H + L + GL T+ +F Q N V Sbjct: 167 GNADDDYVET-NHQQPLTTTV-------------------RGLNFTYLAGNFFQNNYYVL 206 Query: 272 QKMV----ARALEWLDVQPE-DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 MV ARA+ QP + D +CG G F + A A+VVG+E V + Q Sbjct: 207 PLMVEHVLARAVGDDHEQPTMTHLADCYCGSGLFAIAAAPSFATVVGIEINDKAVREAQA 266 Query: 327 NARLNGLQNVTFY---HENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPI 382 NA NG+ + F EN+ ++ P V+LDP R G + + Q+ P Sbjct: 267 NAERNGIDHCQFLAASSENIFAEIRDFPRDTT---VVVLDPPRKGCSVEFLSQLYDFAPR 323 Query: 383 RIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 RIVY+SC+P T ARD++ ++ AGY I + D+FP T H+E +++ R Sbjct: 324 RIVYMSCDPTTQARDAQGIVAAGYRITSVQPFDLFPQTRHIECLMVLER 372 >UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRS2_PERMH Length = 421 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 124/443 (27%), Positives = 214/443 (48%), Gaps = 48/443 (10%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + L G+G+ + +G+ F+P +LP E EV + ++KK + + + + SP R Sbjct: 1 MIVKIEKLVYGGKGIGKLDGRVCFVPFVLPDEEVEVEIKKEKKSFIECEPLSIVEKSPFR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-------ARLMKHDVSEVI-ADVPWGYR 128 P C +F CGGC QH + + Q K+ L RL + ++ + P+ YR Sbjct: 61 TDPPCRYFRYCGGCDYQHITYEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYR 120 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 R +L K + ++GF S I+++ C +L + ++ VR L L + Sbjct: 121 NRTQL------KIRGEKIGFYMRESRQIINIDSCLLLKEDINGMISGVREILKFL--IFQ 172 Query: 189 LGHVELVQATSGTLMI--------------LRHTAPLSSADREKLERFSHSEGLDLYLAP 234 V + ++ G ++ L+H L S EKL +G +Y Sbjct: 173 PEQVHIYSSSDGEALVKFVYQKRVRRFPLGLKH---LRSFLSEKL------KGAGIYHRK 223 Query: 235 DSEILETV-SGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 D + V GE Y+ G++ S F QVN + ++ L+ ++ ++ +D Sbjct: 224 DDLLKRDVLLGESYIYEEYGGIKFRVSMDSFFQVNVYQVENLLDAVLQ--NIGDHEKAVD 281 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 LFCG+G TLP A + G+E P V N +LN ++N F+ ++ + + Sbjct: 282 LFCGVGTLTLPSARYIKEIYGIESNPYAVNDANHNRKLNRIKNAKFFR--MDANRSGGFI 339 Query: 353 AKNGFDKVLLDPARAGAA-GVMQQIIKLEPI-RIVYVSCNPATLARDSEALLKAGYTIAR 410 A+ D V++DP R G + +++ + + I RI+YVSCNP+TLARD LK Y++ + Sbjct: 340 AELKPDLVIIDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDL-GYLKERYSVEK 398 Query: 411 LAMLDMFPHTGHLESMVLFSRVK 433 + M+DMFP T H+ES+V+ ++K Sbjct: 399 VYMIDMFPQTYHIESVVVLQKMK 421 >UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacillus RepID=D2M1T5_BACS4 Length = 469 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 121/446 (27%), Positives = 209/446 (46%), Gaps = 64/446 (14%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+GV + +F+PG LP E V + K ++A ++V+ S +R P CP + C Sbjct: 34 GEGVGFFKRQVVFVPGALPGEEIVCEVAKIKGKFAEGRIVKIRKPSDDRIAPPCPIYKEC 93 Query: 88 GGCQQQHASVDLQQRSKS----AALARLMKHDVSEVI------ADVPWGYRRRARLSLNY 137 GGCQ QH S + Q + K A R K ++ +V + PW YR ++++ + + Sbjct: 94 GGCQLQHLSYEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYRNKSQMQVGH 153 Query: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAPQ----------------------------L 169 ++ G S ++D++ C + PQ L Sbjct: 154 --HQGKVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNERKRTGVL 211 Query: 170 EALLPKVRACLGSLQ-----AMRHLGHVEL-VQATSGTLMILRHTAPLSSADREKLERFS 223 ++ +V G Q A + + V+L ++A L + T+ + + + +K Sbjct: 212 RTIVTRVGFETGEYQVVLVTAKKDIPKVDLFIEAIKQRLPDV--TSIVQNINPKKTSLVF 269 Query: 224 HSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 E + LY +I ET+S R SPR F Q+N +K+ A E Sbjct: 270 GDETIVLY--GKEKIEETMSE---------FRFNLSPRAFFQLNPIQTKKLYDAAKEAAQ 318 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + +++V+D +CG+G L LA A + G++ + +E + NA+ +G++N + Sbjct: 319 LTGKEKVVDAYCGVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKA 378 Query: 344 EEDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 E + + W K G+ D V++DP R G +Q +++++P RIVYVSCNP+TLA++ +A Sbjct: 379 EHLLPE--WEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDA 436 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESM 426 L K GY + L +DMFP T +E + Sbjct: 437 LSKGGYKLKALQPVDMFPQTAQVECV 462 >UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IVF7_ACIBL Length = 441 Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 130/450 (28%), Positives = 214/450 (47%), Gaps = 43/450 (9%) Query: 16 IITVSVNDLDSFGQGVAR-HNGK-----TLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 ++ + + L G G+AR H+ K +F+P + P E E + E K +ARA+ + Sbjct: 1 MVELKIEKLIYGGDGLARMHDAKLGRSKAVFLPFVAPGETVEAIIREQKPGFARAQAEKV 60 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVI---AD 122 L S R+TP CP+F CGGCQ QH Q ++K+ L+R K + + I A Sbjct: 61 LQPSEFRQTPPCPYFFKCGGCQYQHLQYAEQVKAKAQILEETLSRTAKLKLEQPIQTHAA 120 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P GYR R R+ ++++P Q +G+ + GS ++ V+QCPI +P + +L + A Sbjct: 121 EPLGYRNRTRMRVSHVP---QFAIGYYRFGSHSLLPVEQCPISSPLINRVLQGLWAAGRE 177 Query: 183 LQAMRHLGHVELVQATSGTLMILR----HTA------PLSSADREKLERFSHSEGLDLYL 232 + R + V+ + ++L H A P+ R K+ + Sbjct: 178 ERIAREVREVQFFANHDDSRLLLELYIDHHAEPDALQPMIETLRGKMPEIAGVAVFRGAP 237 Query: 233 APDSE-----ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAG----VNQKMVARALEWLD 283 A DSE + + ++ LR + R QV+AG N+ ++ E + Sbjct: 238 ADDSEDQRAPLTRAKASPGVFFGERSLRYK-TKRHEYQVSAGAFFQTNRFLLDEMAETVT 296 Query: 284 VQPEDRV-LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 ++ LDL+ G G F+LPLA Q V+ VE Q + + N L+NV Sbjct: 297 RGHSGKLALDLYSGGGFFSLPLADQFEKVIAVEA----SGHSQADLKTNALRNVKAVRSG 352 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEAL 401 EE + + D V++DP RAG +I ++ R+ YVSC+PATL+RD + L Sbjct: 353 TEEFLRGEGRQLRP-DLVVVDPPRAGLGEKTSHLIGRMSVGRVTYVSCDPATLSRDMKVL 411 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +++G+ + + + D+FP T HLES++ R Sbjct: 412 VESGFRVEEVHLFDLFPQTYHLESVLHLVR 441 >UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Desulfovibrio RepID=C4XJA3_DESMR Length = 450 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 138/449 (30%), Positives = 200/449 (44%), Gaps = 53/449 (11%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + +SV L G+GVAR +G +F+ G LP E VT+ KK +A A R ++ +PE Sbjct: 9 LELSVARLALGGRGVARLDGMVVFVDGALPGETVMAKVTQVKKGFAEAVAERIITPTPEA 68 Query: 77 ETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADVP-------- 124 PRCPHFGVCGGC Q A + ++ + LARL + DVP Sbjct: 69 VEPRCPHFGVCGGCDWQRLDYPAQLFWKREQVAETLARLGG------LPDVPVADTVASP 122 Query: 125 --WGYRRRARLSLNYLPKTQQLQMGFR-KAGSSDIVDVKQCPILAPQLEALLPKVRA-CL 180 +GYR + + +L +G R + + ++D+ CP++AP ++ VR C Sbjct: 123 EVYGYRNKMEFAF-----AGRLHLGLRERRNPARVLDIDTCPLMAPWAGEVVNAVRELCR 177 Query: 181 GS------------------LQAMRHLGH--VELVQATSGTLMILRHTAPLSSADR-EKL 219 + L+ RH G ++ S HT + R +L Sbjct: 178 ETGLAAYDPRTGKGVWRHLVLRDSRHDGSRLAHIITGPSRAAGDAVHTLGKTLLARFPEL 237 Query: 220 ERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARA 278 F HS E V G + G L P F Q N G Q + Sbjct: 238 TGFVHSVRRAPTPVAHGERQSIVLGRGHLTEKMGQATLRVLPDAFAQTNTGAAQSLYEIV 297 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 P LDL+CG G L LA A V G++ P +E + +A+L+ N F Sbjct: 298 TREASSDPAGTALDLYCGSGGLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCVF 357 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARD 397 E + A + V+LDP RAGAA V+ I++ P R+VYVSCNPATLARD Sbjct: 358 --EAADAADALDDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLARD 415 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESM 426 + L +A Y + + +D+FPHT H+E++ Sbjct: 416 LKRLAEA-YDVTSVTPVDLFPHTAHIEAV 443 >UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 n=40 Tax=Clostridia RepID=Y1941_CLOTE Length = 456 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 116/457 (25%), Positives = 204/457 (44%), Gaps = 59/457 (12%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 +++ +++ G+A H G +++ +P + +T KK +A+ K++ L D P + Sbjct: 11 LNIEEIEFPSMGIAYHEGLKVYVKHGIPGQKVLARITTKKKDHAKGKIIEVLEDLPYKIE 70 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP-------WGYRRRA 131 +CP FG CGGC Q + Q K + L K + +P + YR + Sbjct: 71 AKCPAFGQCGGCAHQDIPYEKQLEIKQHEILELFKKANLDGFDFLPIEGSPKQYEYRNKM 130 Query: 132 RLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 + L K +L +G G S I+ +C I+ +L A L + + L Sbjct: 131 EFTFGDLKKGGELNLGMHAKGMSFGIISADECKIVDEDYRNIL---NATLNYFRE-KQLP 186 Query: 191 HVELVQATSGTL--MILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVS--GEM 246 H ++ A G L +++R + E L + +D L +EI+++++ G + Sbjct: 187 HYRIM-AREGYLRNLVIRK----AENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKGNL 241 Query: 247 PWY----------------------------DSNGLRLTFSPRDFIQVNAGVNQKMVARA 278 D GL+ +P F Q N+ +K+ + Sbjct: 242 VGILHTINDSLSDVVQCDKLNILYGRDYIIEDLLGLKFKITPLSFFQTNSKGAEKLYSIV 301 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 +++ V DL+CG G +A +A V+G+E + VE ++NA+LN L N F Sbjct: 302 RDFIGESKSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEF 361 Query: 339 YHENLEE---DVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATL 394 ++ + +V ++P D ++LDP R G ++ +IK + IVYVSCNP TL Sbjct: 362 IAGDIAQVIKEVKQKP------DVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTL 415 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 D + L++ GY I ++ +DMFP T H+E++V R Sbjct: 416 VEDLKVLVENGYVIEKVKGMDMFPSTPHVETVVGLRR 452 >UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D234_PELTS Length = 470 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 128/458 (27%), Positives = 210/458 (45%), Gaps = 44/458 (9%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 I + ++ ++ G+GV R+ G +F+PG P + V++ KK YARA+++ + SP R Sbjct: 15 IVLQISGINHSGEGVGRYRGLAVFVPGAAPGDQVVAEVSDVKKNYARARLLGIKTASPAR 74 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIA----DVPWGYR 128 P C F CGGC+ QH + Q K+ +LAR+ + +V A + PW YR Sbjct: 75 REPECGRFSRCGGCRLQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGMEHPWHYR 134 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIV---DVKQCP------------ILAPQLEALL 173 + + P ++ +GF + G+ ++ + CP LA +E LL Sbjct: 135 NKVHFQVEERP--DKIALGFYEEGTHNLTAFFNEGACPGTGCLLVDDELNKLAALIEKLL 192 Query: 174 PKVRACLG-----SLQAMRHLGHVELVQAT-SGTLMILRHTAPLSSADREKL--ERFSHS 225 + R G + R H+ L + +G +M + T + E S Sbjct: 193 NRHRGPFGRRILPQKRQSRFFRHIVLRKGFFTGEVMAVLVTGSGEWPGEKAFVKELLSLR 252 Query: 226 EGL-----DLYLAPDSEIL----ETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMV 275 GL ++ P + ++G D G L SP F QVN + Sbjct: 253 PGLVSLVRNINDGPPGVLFGKKSRCLAGREHIKDRLGHLIFRISPSSFYQVNPVQTLVLY 312 Query: 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335 + ++ + + V+D + G+G+ L LA +A V G+E +P V ++NA LN + N Sbjct: 313 NKVQQYAALTGRETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITN 372 Query: 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATL 394 F +E + + V+LDP R G V++ +++++ R+VYVSCNPATL Sbjct: 373 AEFLTGKVESLIPILAAQGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYVSCNPATL 432 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 ARD GY + + +DMFP T H+E +VL SR+ Sbjct: 433 ARDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSRL 470 >UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n=3 Tax=Desulfovibrio vulgaris RepID=Y924_DESVH Length = 468 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 123/449 (27%), Positives = 204/449 (45%), Gaps = 37/449 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V+V+ L G+ V RH G+ +F+ LP + V +T +K++A A+ + ++ + + Sbjct: 10 LDVTVDALAPGGKAVCRHEGRVIFVDRGLPGQQLHVRLTTVRKRFAEAECLAVVTHTADE 69 Query: 77 ETPRCPHFGVCGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADVP----WGYR 128 P CPHFG CGGC Q+ A + ++R +L R+ + + V+ +P G+R Sbjct: 70 CDPFCPHFGDCGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFR 129 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR-----ACLGSL 183 + + + + L +G R+ G ++VDV C + ++ R + L Sbjct: 130 NKMEFAFTTDDR-EMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGW 188 Query: 184 QAMRHLGHVELV----QATSGTLMILRHTAPLSSADREKLERFS-------------HSE 226 H G + A G ++ TAP A+ F+ HS Sbjct: 189 DDAAHRGFWRFLVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSI 248 Query: 227 GLDLYLAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 + GE+ + G + L F F+Q N + + + Sbjct: 249 RSQNSQVAYGDATVFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMAGLS 308 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 + V DL+CG+G+ L LA AA++ G+E PA VE Q+NA+ G + F ++ Sbjct: 309 GREHVWDLYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRA 368 Query: 346 DVTKQPWAKNGF---DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 + + K D V+ DP RAG V+ +++ P RIVYVSC+PAT+ARD L Sbjct: 369 LLRSRSKGKAQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDV-GL 427 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFS 430 L YT+ +D+FPHT H+E++VL S Sbjct: 428 LMQRYTLHEARPVDLFPHTPHVETVVLLS 456 >UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI04_EUBR3 Length = 493 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 132/488 (27%), Positives = 213/488 (43%), Gaps = 73/488 (14%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I + + D+ + G+G+ ++G T F+ L + T+ KK Y A+V + S Sbjct: 6 IFELEITDMGTDGEGIGHYDGMTFFVKDALIGDVITARATKLKKNYGYARVEEIKTPSTF 65 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL------------ARLMKHDVSEVIADV 123 R P+C CGGCQ Q S + Q K+ + A+L V D Sbjct: 66 RVEPQCELHKRCGGCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDN 125 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 P+ YR +A+ + Y + + GF + S +I+ V+ C + PQ + +L ++ + Sbjct: 126 PYRYRNKAQFPVGY-DRDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNEC 184 Query: 183 ----LQAMRHLGHVELVQA----TSGTLMI--------LRHTAPLSSADREKLERFSHSE 226 H G V V TS +M+ L +A ER S + Sbjct: 185 GITPYDENTHKGLVRHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKID 244 Query: 227 GL-DLYLAPDSEILETVSGE-------------------MPWYDSNGLRLTF--SPRDFI 264 G+ + + E + G+ P + G +T+ SP+ F Sbjct: 245 GMTSISYNINKENTNVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFY 304 Query: 265 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 QVN +K+ + AL + + + V DL+CG+G +L L+ +A V GVE VP +E Sbjct: 305 QVNPKQTEKLYSTALAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDA 364 Query: 325 QQNARLNGLQNVTF-----------YHENL--EEDVTKQPWAKNGF------DKVLLDPA 365 + NA+LNG+ N F ++EN +E++T A G D +++DP Sbjct: 365 KNNAKLNGITNAQFFVGKAEDVLPQFYENAKKKENITDDT-ASTGHTDMLRPDVIVVDPP 423 Query: 366 RAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R G + ++ + P RIVYVSC+ ATLARD + L + Y + + D F HT H+E Sbjct: 424 RKGCDEKCLDTMLAMSPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVE 483 Query: 425 SMVLFSRV 432 S+ L RV Sbjct: 484 SICLLERV 491 >UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chloroflexus RepID=A9WK13_CHLAA Length = 416 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 127/424 (29%), Positives = 195/424 (45%), Gaps = 33/424 (7%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 I + + + G GV RH +F+ G LP E T+TE ++ RA V L +PER Sbjct: 5 IELEIEGIAQGGDGVGRHGDLVVFVTGALPGERVRATITERHTRFLRATVCDILRAAPER 64 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADV--------PWGYR 128 P+ QH + Q R K +A ++ + ++ + PWGYR Sbjct: 65 VEPQ---IKPGDHAPWQHIAYPAQVRYKGIIVADQLRKFLPDITIPIQPVIAAPHPWGYR 121 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 ARL ++ +G+ AG+ +VD+ P+L LP +R L SL+ + Sbjct: 122 NSARLHVD------GATLGYHAAGTKTVVDLADDPLL-------LPALRDTLRSLRRLAF 168 Query: 189 LGHVELV--QATSGTLMILRHTAPLSSADREKLERFSHS-EGLDLYLAPDSEILETVSGE 245 G ++ V +A++ +P A+R L R + + + LA + E G Sbjct: 169 AGLIKEVTLRASATYGYAAARLSPTPDAERHALWRLATAWKASTPVLAGVTLEDEPFVGT 228 Query: 246 MPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 YD G+ S F QVN ++MVA + L R+LD + G+G+F LPL Sbjct: 229 PFVYDELAGVIFRLSLGSFFQVNHAQAERMVAVVRDALAPH-GGRLLDAYSGVGSFALPL 287 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A V+ VE VE G+Q+A N + NV F + E V F V+LDP Sbjct: 288 ARCYDEVIAVEAYQPAVEDGRQSAIDNQITNVQFINGAAEHTVAH---LSGPFHAVILDP 344 Query: 365 ARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 R G +++ II P +IVY+SC+P + RD LL AGY I + +D+FP T H+ Sbjct: 345 PRRGCHPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQTPHI 404 Query: 424 ESMV 427 E+++ Sbjct: 405 ETII 408 >UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopobium RepID=C8WAE3_ATOPD Length = 441 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 134/438 (30%), Positives = 204/438 (46%), Gaps = 39/438 (8%) Query: 26 SFGQGVARHN--GKTLFIPG-LLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCP 82 S+G H GKT+FI G +P + V VTE+ +++R ++V+ L S RE P Sbjct: 12 SYGPDAIAHTSEGKTVFISGGAVPGDTVSVQVTENSDRFSRGQLVKVLEASEFREPRPNP 71 Query: 83 HFGVCGGCQQQHASVDLQ----QRSKSAALARL---MKHDVSEVIADV-----PWGYRRR 130 + G + + Q + S +AL R+ DVSE++ D+ PWGYR + Sbjct: 72 FVALTGATPWGNIVYEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSPGEPWGYRNK 131 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 L+ + +G DIV +K CP+L + + V L L L Sbjct: 132 IELAFKR--NGNKTLVGMYAPNGQDIVRIKDCPLLDKSNQKAVGAVSGALSYLSGSHELD 189 Query: 191 HVEL---VQATSGTLMILRHTAPLSSADREKLERF------SHSEGLDLYLAPDSEI--- 238 + V + L + TAP S R ++ R + S + P Sbjct: 190 VERIGIRVSRRTKELEVALWTAP-SGFPRAQVARVLSDAVKATSVVRVMTKGPSKARRVV 248 Query: 239 -LETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 +E +SG W + +G ++ S F QVN +K+V L LDVQP+D +DL+CG Sbjct: 249 GVERLSGSGSWSELIDGQKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPDDEAMDLYCG 308 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 G FTLPLA +A V VE V ++N L L NV + + D ++ + Sbjct: 309 AGTFTLPLAKRAGFVSAVEAYGPAVRDLRRNLELAKLDNV----DAVGGDAGRE-FPDTD 363 Query: 357 FDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAML 414 D +++DP RAG A V+QQ+ K I YVSC+PATLARD + ++ G Y + + Sbjct: 364 ADVIIVDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPVSVTPV 423 Query: 415 DMFPHTGHLESMVLFSRV 432 D+FP T H+E++ L R+ Sbjct: 424 DLFPQTFHVENVCLLKRI 441 >UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=12 Tax=Chlorobiaceae RepID=Y009_CHLTE Length = 483 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 129/473 (27%), Positives = 204/473 (43%), Gaps = 61/473 (12%) Query: 16 IITVSVNDL----DSFGQGVARHNGKTLFIPGLL-PQENAEVTVTEDKKQYARAKVVRRL 70 II +++ D FG+ G + + G+L P + + + K +Y A+ + L Sbjct: 17 IIELTITDHAEKDKCFGKTT---EGMGVMVSGILAPGDRVSAQIYKVKSRYLEARAIEVL 73 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADV 123 SP+R P CP FG CGGC+ H S + Q R K + ++H DV V+A Sbjct: 74 EASPDRVEPVCPVFGSCGGCKWMHVSYEAQLRYKHKKVTDSLEHIGGFESPDVRPVLA-A 132 Query: 124 P--WGYRRRARLSL-------------NYLPKTQQLQMGFRKAGSSD-IVDVKQCPILAP 167 P YR + S + L K + +GF G+ + ++D+ C + Sbjct: 133 PDALHYRNKVEFSCSNMRYLLQSEIDSDQLAKPKTFALGFHAPGNFEKVLDLDTCYLAKE 192 Query: 168 QLEALLPKVRAC-----LGSLQAMRHLGHV--------ELVQATSGTLMILRHTAPLSSA 214 + +L +R L A H G++ E + ++ + L A Sbjct: 193 CMNRVLNVLRDFAIERGLEPYAAKAHEGYLRNLMLRYSERHEQLMVNIVTSWYDKALMQA 252 Query: 215 DREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG---------LRLTFSPRDFIQ 265 +E+LE + + L + +GE + S L S F Q Sbjct: 253 LKERLEAAMPEQQMTLLNNVTTRKNTVATGEQEYVISGDGYVTERLGDLDFRISANSFFQ 312 Query: 266 VNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ 325 N + + + + + PED V DL+CG G TL LA +G+E V + V+ + Sbjct: 313 TNTRQAETLYDQIIAVGGITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAE 372 Query: 326 QNARLNGLQNVTFYHENLEEDVTKQ----PWAKNGFDKVLLDPARAGA-AGVMQQIIKLE 380 NA LNGL N F+ +L+ Q P+AK ++ DP RAG + ++KL+ Sbjct: 373 MNAELNGLSNTVFFQADLKNFHAMQEALEPYAKPRI--IVTDPPRAGMHPKALDTMLKLQ 430 Query: 381 PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 P RIVYVSCNP LARD + + GY + +DMFP T H+E++ F R + Sbjct: 431 PERIVYVSCNPDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFERAE 483 >UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=Sulfurihydrogenibium RepID=C1DTC8_SULAA Length = 420 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/422 (26%), Positives = 211/422 (50%), Gaps = 34/422 (8%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G G+A+ + K F+P L E E+ V ++KK Y+ + + + SPER P C +F +C Sbjct: 14 GYGLAK-DDKVYFVPYTLEGEEVEIEVVQEKKDYSLSNPINIIKPSPERVEPVCKYFTLC 72 Query: 88 GGCQQQH----ASVDLQQRSKSAALARLMKHD--VSEVIADVPWGYRRRARLSLNYLPKT 141 GGC QH +++++ L R+ K D + +V P+ YR + + K Sbjct: 73 GGCDFQHIPYEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQF------KF 126 Query: 142 QQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGT 201 GF + S+ ++D+ C +L ++ ++ L + V +V + S Sbjct: 127 DGKNFGFYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFL--FKYALSPSQV-IVFSNSKN 183 Query: 202 LMILRHTAPLSSADRE---KLERFS-----HSEGLDLYLAPDSEILETVSGEMPWYDS-N 252 +++ P +S K+E + + +G+ Y D + + + GE +++ + Sbjct: 184 QKLIKFVFPDNSQIANIIPKIEIYKDEIDENIKGIGFY---DKKKRQLLLGEYVIFETVD 240 Query: 253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVV 312 + S F QVN + ++ ++ + + R +D +CG+G F++PLA V+ Sbjct: 241 NYKYRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAVDFYCGVGTFSVPLANYVREVL 300 Query: 313 GVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPARAG-AA 370 G+E V+ + N R N L+N+ F E+ + +AK+ + V+ DP R+G Sbjct: 301 GIESNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGLK---YAKDFKPEVVVFDPPRSGLNK 357 Query: 371 GVMQQIIKLEPI-RIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 ++++I K+E I +I+Y+SCNP+TLARD + + G+ +++M+DMFP T H+ES+V+ Sbjct: 358 TIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKVSMVDMFPQTHHIESVVVL 417 Query: 430 SR 431 + Sbjct: 418 EK 419 >UniRef50_C6WAK7 Deoxyribonuclease/rho motif-related TRAM n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WAK7_ACTMD Length = 411 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 138/423 (32%), Positives = 185/423 (43%), Gaps = 54/423 (12%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKK-QYARAKVVRRLSDSPERETPRCPHFG- 85 G VARH G+ +F+ LP E V +T D + R V L SP+R TP CP G Sbjct: 22 GHCVARHEGRVIFVRHALPGELVRVLITSDNGGSFCRGDAVEVLRSSPDRVTPPCPFSGP 81 Query: 86 -VCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSEVIADVPWGYRR-RARLSLNYLP 139 +CGGC QHAS Q+ K+A +A RL + V+ +P G+R R RL L Sbjct: 82 GMCGGCDWQHASWGAQRDLKAAVVAEQLQRLAGVEREVVVEPLPGGHRDWRTRLRLAV-- 139 Query: 140 KTQQLQMGFRKAGSSDIVDVKQCPILAPQ-LEALLPKVRACLGSL------QAMRHLGHV 192 + + GFR S D++ V C I AP L+ +L + L +H+ + Sbjct: 140 -GRDGKPGFRGHHSHDVIPVDHCVIAAPHALDDVLDRAWRPGSELAVTLDSTGKQHVTEI 198 Query: 193 ELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSN 252 Q G R P S KL R S G + A D + L G Sbjct: 199 APAQRRGG-----RRPTPGPS----KLRRGS---GGAVERAADRDWLVRADG-------- 238 Query: 253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AA 309 F QV+ EW +P D DL+ G G F LA Q Sbjct: 239 ----------FWQVHPHAADTFARVVGEWAACEPGDHAWDLYGGAGLFASVLAAQVGETG 288 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 SV VE V GQ+ L L V ++ +E+ VT+ P+ V+LDP R GA Sbjct: 289 SVEVVESATNAVRDGQRA--LADLPQVKWHVGRVEDSVTRAPFTDRSPSVVVLDPPRKGA 346 Query: 370 -AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVL 428 A V+ + P R+VYV+C+PA LARD L GY +A+L D FP T H+E + L Sbjct: 347 GAAVLDAVAARRPARVVYVACDPAALARDVALLAGHGYRLAQLRAFDAFPMTHHVECVAL 406 Query: 429 FSR 431 F+R Sbjct: 407 FTR 409 >UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S3A2_FINM2 Length = 403 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 111/422 (26%), Positives = 205/422 (48%), Gaps = 37/422 (8%) Query: 23 DLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCP 82 D+ G+ VA++ GKT+F+ G E E ++KK A + + SP ++ P CP Sbjct: 7 DMIDDGRCVAKYEGKTVFVDGGSIGEIIEAKKIKEKKNLIFATKTKTIQQSPHKQEPLCP 66 Query: 83 HFGVCGGCQQQHAS----VDLQQRSKSAALARLMKHDVSEV--IADVPWGYRRRARLSLN 136 HF C GC Q + +++++ S L R+ K D+ +V + + + YR + L Sbjct: 67 HFYECDGCSMQDITYEKELEIKKNSVLNKLQRIAKLDIKDVDILTNAEYYYRNKVDL--- 123 Query: 137 YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLP-KVRACLGSLQAMR-HLGHVEL 194 K + ++G+ + ++ + C I + + ++ V L + ++ + + Sbjct: 124 ---KVENGKIGYYNRKTHNLTQISTCKIASTAINEMINWLVNHDLNGVSEIKIRSNYNDE 180 Query: 195 VQATSGTL--MILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSN 252 +Q + + +L + + S +E + ++ DL + + + D Sbjct: 181 IQISLDYISDQLLENLKTVDSI----VEIYEKNKNFDL-----------IYKKKQFVDKI 225 Query: 253 G-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASV 311 G L SP+ F QVN + A + ++ + DR+LDL+CG+G T+ + + Sbjct: 226 GDLSFIISPKSFFQVNKYNTSLLYDTAKQMMNAEANDRILDLYCGIGTTTMYIGN--GNT 283 Query: 312 VGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-A 370 +GVE V V+ +N +LN L+++ F E E V K + FD +L+DP R G Sbjct: 284 IGVEVVKDAVKDANENKKLNNLESIQFIEEKSENVVGK--LTQEHFDVILVDPPRKGMDE 341 Query: 371 GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 V+ IIK ++VY+SC+PATLARD +AL + G+ + + ++DMF T H+E++ L Sbjct: 342 KVVDAIIKSTAKKLVYISCDPATLARDLKALTENGFGVEDVKLVDMFAKTMHVETVALIQ 401 Query: 431 RV 432 ++ Sbjct: 402 KI 403 >UniRef50_Q6MGU3 Uncharacterized RNA methyltransferase Bd3828 n=1 Tax=Bdellovibrio bacteriovorus RepID=Y3828_BDEBA Length = 393 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 121/425 (28%), Positives = 191/425 (44%), Gaps = 72/425 (16%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 I +++ L G GVARH G +F+P P E +T KK + A+VV L+ SP R Sbjct: 19 IKLNIEKLAIGGAGVARHEGMVVFVPQAAPNEEILAEITLVKKNFMEARVVEILTASPHR 78 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV------IADVPWGYRRR 130 P CP CGGC QH + + Q+R K + +K ++ I P R R Sbjct: 79 REPPCPVAHTCGGCNWQHITEEEQRRQKHTLVLETIKKFNRDLEFNYLPIQPSPRVLRYR 138 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 R+ PK + + GF S IV+ C I L +V+A A Sbjct: 139 NRIQ----PKFKNGRFGFFARNSHQIVETMDCLITEETLTDKFAEVKAWAEKKNA----- 189 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYD 250 + L+R L++Y+A + ++ + + + Sbjct: 190 --------------------------KDLQR------LEMYIAEEGDVRYGLITD----E 213 Query: 251 SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA- 309 +G+ F QVN N+ ++ AL+W P +V DL+ G GNFT PLA + A Sbjct: 214 DDGI-------GFSQVNRFQNEDLLRTALDWAGDGPYKKVYDLYAGAGNFTFPLAAKYAG 266 Query: 310 -SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG 368 ++GVE P LVE+ + + +T++ ++E + + K+ D V+LDP RAG Sbjct: 267 SEIIGVELNPKLVERARSKI---TDKRMTYFMSDVETYMRRASIGKD--DLVVLDPPRAG 321 Query: 369 AAG-VMQQIIKLEPIRIVYVSCNPATLARDSEAL------LKAGYTIARLAMLDMFPHTG 421 A+ MQ + +P +I+Y+SC+P +LARD L Y + R+ +MFP T Sbjct: 322 ASEYTMQTLAAAQPRKIIYISCHPVSLARDLNWFFAQTQKLGIKYKLDRVQTFEMFPQTD 381 Query: 422 HLESM 426 H+E++ Sbjct: 382 HVETI 386 >UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase RumA n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D2C9 Length = 470 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 139/472 (29%), Positives = 222/472 (47%), Gaps = 53/472 (11%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 S K+ T +I V D + G+ VA+ +G+ +FI +P + +V T+ K Y Sbjct: 2 SKKKNITIENVI---VTDAGAKGKSVAKAPDGRIIFINNAIPGDVVDVQTTKKKSAYYEG 58 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQ----QRSKSAALARLMKHDVSEVI 120 + S R TP C HFG CGGC+ Q + + Q Q+ L RL K + E++ Sbjct: 59 FATKFHEYSNRRVTPVCAHFGYCGGCKWQDMNYESQLFYKQKEVENNLVRLGKITIPELM 118 Query: 121 ADVP----WGYRRRARLSL------------NYLPKTQQLQMGFRKAGSSD-IVDVKQC- 162 V + YR + S N Q+ +GF AG+ D I+D+ +C Sbjct: 119 PIVASENIYFYRNKMEFSFSDMRWLTPEEIQNADTIEQRNGLGFHIAGAWDKILDIDKCY 178 Query: 163 ----PILAPQLE----ALLPKV-----RACLGSLQAM----RHLGHVELV----QATSGT 201 P A +LE AL + R G L++M G + LV + Sbjct: 179 LQEDPSNAIRLEIKRFALENNIAFYSPRQQTGVLRSMMIRISSTGEIMLVIQFFSDSKKC 238 Query: 202 LMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPR 261 ++L H A + L+ +S+G D D +I + + + + GLR + + Sbjct: 239 NLLLEHIAQ-TFPQITSLQYCINSKGNDAIYDQDLKIYK--GTDCIYEEMEGLRFKINAK 295 Query: 262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321 F Q N+ K+ ++ D++ ++ V DL+ G G +A +A VVGVE VP + Sbjct: 296 SFYQTNSKQAHKLYQITRDFADLKGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAI 355 Query: 322 EKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPARAGA-AGVMQQIIKL 379 + NA+ NG++NV+FY +++ NG D ++ DP R G V++QI+++ Sbjct: 356 ADAKANAKANGIENVSFYVGDMKNVFNDTFIKANGTPDVIITDPPRDGMHKDVVEQILQI 415 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 P +IVYVSCN AT ARD ALL Y + ++ +DMFP T H+E++VL + Sbjct: 416 APPKIVYVSCNSATQARDL-ALLDEMYKVTKVQPVDMFPQTYHVENVVLLEK 466 >UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Roseiflexus RepID=A7NGT5_ROSCS Length = 439 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 128/432 (29%), Positives = 194/432 (44%), Gaps = 24/432 (5%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 +T + ++++ + G+ V R + +F G +P E V + E + YAR V+ L Sbjct: 15 STWPDTLELTLDGIAQGGEAVGRWQNRVVFAAGGIPGERVVVRLRERHESYARGDVIDVL 74 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEV----IAD 122 SP+R PR P QH + D QQR + + LA+ D + V A Sbjct: 75 LASPDRVAPRLPG---ASHMPWQHIAFDAQQRLRRQILADQLAKFAGVDPAVVEATAFAS 131 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQL-EALLPKVRACLG 181 PW YR RL + ++G+ ++ + I ++ P+L P L EAL A Sbjct: 132 KPWEYRNNTRLHCD------GRRIGYYESNTRSIAELDHDPLLHPVLNEALAALRSALAD 185 Query: 182 SLQAMRHLG-HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 L L + + +A + LR S R G+ ++ P +L Sbjct: 186 ELDDAPPLEVTLRVSEAYGYCIAALRGRGDRRSLAARWRARCPVLAGV-VFTVPPPHMLP 244 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 + + + L P F QVN ++ L + R+LDL+CG G F Sbjct: 245 PLGADTLVEELADLTFLLRPTTFFQVNVAAAATLLNLIRAGLGDEARGRLLDLYCGAGAF 304 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 TLPLA A +VGVE V +++A +N + NV F + E + FD V Sbjct: 305 TLPLARNAIEIVGVEEYAGAVADAERSAAVNHISNVRFITGSAEAVLANL---DGPFDAV 361 Query: 361 LLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 +LDP R G V+ +I+ P RIVYVSC+PATLARD + L+ GY + R +D+FP Sbjct: 362 VLDPPRRGCHPRVLHALIERAPRRIVYVSCHPATLARDLKTLIAGGYAVVRATPVDLFPQ 421 Query: 420 TGHLESMVLFSR 431 T H+ES+V R Sbjct: 422 TPHIESVVALMR 433 >UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS6_PETMO Length = 446 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 116/429 (27%), Positives = 196/429 (45%), Gaps = 35/429 (8%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G G+AR+ K + + P E V T K A + L S +R + +C HF C Sbjct: 17 GYGMARYADKIYMVNNVYPGEFVSVIPTRTNKNLVFADLKEILQPSHQRVSSKCKHFPEC 76 Query: 88 GGCQQQHASVDLQQRSKSAA----LARLMKHD---VSEVI-ADVPWGYRRRARLSLNYLP 139 GGCQ Q +SK+ L R+ K D V+++I +D+ WGYR R + Sbjct: 77 GGCQWLDYDYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIWGYRNRMEYTFQ--- 133 Query: 140 KTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA-----------MRH 188 + +L++G A S++++D+ CPI + + K R + L ++H Sbjct: 134 ENNKLKLGLNIANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNIEIYDKKTKKGILKH 193 Query: 189 LGHVELVQATSGTLMILRHTA--PLSSADREKLERFSHSEGL-DLYLAPDSEIL----ET 241 L ++I+ +T P ++ ++ H L L + DS +L +T Sbjct: 194 LVIRRSFSKNQTMVIIVTNTEYLPYEEEIKQFFQQNFHPYSLIHLMNSSDSVVLRGPYKT 253 Query: 242 VSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWL--DVQPEDRVLDLFCGMG 298 + GE + + + P F Q N V QK++ LE+ + Q + +LDL+ G+G Sbjct: 254 LLGEGVLNEEFDDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNAQKDATMLDLYSGVG 313 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 F++ + + VE V+ N+ +N +NV F + + + K + FD Sbjct: 314 LFSIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILASSKPYLMKNSSKR--FD 371 Query: 359 KVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 V+LDP R G +Q + + I+YVSC+P+T ARD K G+T+ + DMF Sbjct: 372 YVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTKNGFTLKSVQPFDMF 431 Query: 418 PHTGHLESM 426 PH+ H+E++ Sbjct: 432 PHSYHIENV 440 >UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacteroidetes RepID=B3EU44_AMOA5 Length = 468 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 126/457 (27%), Positives = 213/457 (46%), Gaps = 71/457 (15%) Query: 31 VARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGC 90 VAR + + +F+ P + ++ + + K+ YA A V+ P R P C HFGVCGGC Sbjct: 25 VARVDNQVVFVEQAAPGDIMDIQIMKKKRGYAEAIPVQLHKPGPNRIQPFCMHFGVCGGC 84 Query: 91 QQQHASVDLQ-------QRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPK--- 140 Q QH Q + K L R++ V++++A P Y R +L + K Sbjct: 85 QWQHIDYSAQLAAKEQLVKEKLIRLGRIVNPPVAKILAADPNQYYRN-KLEYTFSNKRWL 143 Query: 141 TQQ----------LQMGFRKAGSSD-IVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 TQQ +GF K G D +VD++ C + A A +R +G A H Sbjct: 144 TQQEIQSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNA----IRLAVGQF-AREHG 198 Query: 190 GHVELVQATSGTL--MILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMP 247 ++ G L +I+R T S+ + + +F ++ P I++ + + P Sbjct: 199 YSFYDFRSHQGLLRNLIVRTT---STGEVMVIVQFGENQE-----GPIVHIMDFIQKKFP 250 Query: 248 ----------------WYD---------------SNGLRLTFSPRDFIQVNAGVNQKMVA 276 +YD +GL+ P+ F Q N+ + + Sbjct: 251 TLTSLQYIVNTKYNETFYDLEVHCYAGQPFITEVIDGLQWQIGPKSFFQTNSTQAKVLYQ 310 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 + ++Q + V DL+ G+G LA +A VVG+E + + ++ Q NA+LN L NV Sbjct: 311 TVADLANLQGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNV 370 Query: 337 TFYHENLEEDVTKQPWAKNGF-DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATL 394 +F+ ++++ ++ + G D ++ DP RAG V+QQ++++ P +I+YVSCNPAT Sbjct: 371 SFWLGDMKDIFNEELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNPATQ 430 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 ARD L+ Y + +DMFPHT H+E++ + + Sbjct: 431 ARDIHD-LQDRYVLTHAQPIDMFPHTSHVENVAVLVK 466 >UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTT0_9FIRM Length = 518 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 120/435 (27%), Positives = 212/435 (48%), Gaps = 45/435 (10%) Query: 23 DLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCP 82 D D G G+ + + +F+ + + T+T+DKK + + +V + L S +R C Sbjct: 12 DFDYKGMGMTKLDDIPVFLDKGVIGDKVSYTITKDKKSFYKGRVTKILKKSKDRVESPCK 71 Query: 83 HFGVCGGCQ----QQHASVDLQQRSKSAALARLMKHD--VSEV-IADVPWGYRRRARLSL 135 +F CGGC + S+D +++S + L R+ + D VS+V ++ + YR + + Sbjct: 72 YFNKCGGCDFLNYKYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKTFNYRNNMQFQV 131 Query: 136 NYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELV 195 + ++G S +IV ++ C + + L K+ +L+ ++ LG + Sbjct: 132 ------KNGKIGLYMKNSKEIVPIEHCLMQSTNANKTL-KILTKFKNLEKIKTLG---IR 181 Query: 196 QATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSG----------- 244 +M++ +SS +EK+ + + G DL A I E ++ Sbjct: 182 TNYKDQVMLI-----ISS--KEKINKLNLILG-DLIDANVVSIYENINNRKNAHYGDEFN 233 Query: 245 -----EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN 299 E N L SP F QVN + + +A+E+L V+ +++ DL+ G+G Sbjct: 234 LLYGQEYLEEKINKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGT 293 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-QPWAKNGFD 358 +L +A++ A +GVE V +E + NA+ N LQ F EE + K Q K D Sbjct: 294 LSLEIASRKAQTLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEKIQTDEKIKMD 352 Query: 359 KVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 K+L+DP R G ++ + K +IVY+SCNPATLARD + +LK Y + ++ + D+F Sbjct: 353 KILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLK-ILKEKYKVEKVEIFDLF 411 Query: 418 PHTGHLESMVLFSRV 432 P+T H+E + L S++ Sbjct: 412 PYTSHVEVITLLSKL 426 >UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UYU1_9AQUI Length = 408 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 117/429 (27%), Positives = 208/429 (48%), Gaps = 34/429 (7%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + VS+ + G+G++R K F+P LP+E EV + E+KK V L +P R Sbjct: 1 MKVSIEKVVFGGKGLSRLKEKVCFVPFTLPEEVVEVEIKEEKKSICEGFPVDVLEKNPYR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIADV-PWGYRR 129 P+C ++ CGGC QH + + Q K L ++ D +VI P+ YR Sbjct: 61 VEPKCKYYMQCGGCDFQHINYEKQVEIKKEILEETLQRIGKINKDTDKVIPSANPFNYRN 120 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R + K GF K S+++VD++ C I + L+P ++ + + L Sbjct: 121 RVQF------KFDGKNFGFYKLKSNEVVDIESCDIADKNINNLIPTLKNLAKNNPQVEEL 174 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY 249 ++L+ ++ + L+ F+ G+ +Y+ LE S +Y Sbjct: 175 HIFHHPDNKPMLKIVLKENLFMNIENL--LDTFA---GIGVYIGNKRVKLEGKS--FTFY 227 Query: 250 DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR--VLDLFCGMGNFTLPLATQ 307 + S F QVN + +V + + P+D + D++CG+G FTLP + + Sbjct: 228 RAGKFNYRVSIDSFFQVNKYQLENIVDEVISEI---PKDSQCIGDIYCGVGLFTLPASKK 284 Query: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE--DVTKQPWAKNGFDKVLLDPA 365 A V G+E + V+ Q N +++ + N FY + +E+ D+ + N D ++ DP Sbjct: 285 AKKVFGIEASKSAVKDAQYNVKVHNIGNAKFYQKVVEKSADII---FGYNP-DTLIFDPP 340 Query: 366 RAGA-AGVMQQIIKLEPI-RIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 R G ++Q++++L+ + RI+YVSCNP+T +RD LL + + ++ ++DMFP T H+ Sbjct: 341 RTGIPKNIIQKLLQLKSLKRIIYVSCNPSTASRDIN-LLSEKFELKKVKLIDMFPQTHHI 399 Query: 424 ESMVLFSRV 432 ES+ + +V Sbjct: 400 ESIFVLDKV 408 >UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinella chromatophora RepID=B1X3H7_PAUCH Length = 448 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 127/444 (28%), Positives = 210/444 (47%), Gaps = 34/444 (7%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + + +SV DL G GVAR +F+ GLLP E + +T ++ ++ + S Sbjct: 7 ECLKISVFDLTIQGIGVARWQEHVIFVAGLLPGEIGFIQITHINQKVGIGVIINKNVFSK 66 Query: 75 ERETPRCPHFGVCGGCQQQ----HASVDLQQRSKSAALARLMKHDVSEV---IADVPWGY 127 ER P C CGGC Q A V +Q S L RL +V + I + P Y Sbjct: 67 ERTQPICMLAKDCGGCSLQSINEQAQVAWKQHYVSETLNRLSGIEVKVLPLLITNEPIKY 126 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL------- 180 R +A + L + L+ GF + S IV++ CP+L P+++ L+ ++A L Sbjct: 127 RNKALIPLEQ-TSSGWLRAGFYRRASHQIVNMDNCPLLDPRIDTLVEPIKADLETSHWPI 185 Query: 181 --GSLQAMRHLG-HVELVQATSGTLMILRH--TAPLSSADREKLERFSHSEGLDLYLAPD 235 SL +RHL V ++ ++ H +S + ++R+ G+ L L P+ Sbjct: 186 DIHSLNGIRHLCLKVGILTNEIIITLVSSHDRMPGISKLAQHWMQRWPQVVGVCLNLQPN 245 Query: 236 SEIL------ETVSGEMPWYDSN--GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + + +T++G PW L L + F Q+N ++ V L+V Sbjct: 246 LDNVAIGSSTKTIAGR-PWLIERFCNLNLRIASDTFFQINTLQAERAVNFLASILNVSTG 304 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 ++LD + G+G +LPLA A+V+G+E + V + NA+LN + + F H ++ E + Sbjct: 305 PKILDAYSGVGTLSLPLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAEAL 364 Query: 348 TKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG- 405 + D +++DP R G V++QII + VY+SCNP+TLARD L AG Sbjct: 365 ALHLPSS---DALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTLAGN 421 Query: 406 YTIARLAMLDMFPHTGHLESMVLF 429 + + +D FP T H+E + + Sbjct: 422 IKVTFIQPIDFFPKTTHVECLTIL 445 >UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ2_9FIRM Length = 453 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 137/450 (30%), Positives = 205/450 (45%), Gaps = 39/450 (8%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 T QI+T+ + L S G GVA +G+ +F+PG P + +V + + K YA ++ + Sbjct: 4 TKNQILTLEIESLSSDGNGVAHSDGQAIFVPGTAPGDTVKVRIVKPMKTYAFGRLESLRA 63 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVS-EVIADVPWG 126 P+R P CP G CGGC +H S + R+K+ A ARL K D+ + P Sbjct: 64 SGPDRIIPDCPVAGPCGGCGLRHISYQAECRAKTCFVQDAFARLGKLDLPVHPVLGAPDI 123 Query: 127 YRRRARLSLNY-LPKTQQLQMGFRKAGSSDIVDVKQCPI-------LAPQLEALLPKVRA 178 R R ++ L + L GF S I+ C + LA + LL K A Sbjct: 124 NRYRNKVQLPVGTDENGHLTTGFFAGRSHRIIACPDCKLQPEWMNRLAARACELLEKAGA 183 Query: 179 CLGSLQAMRHLG---HVELVQA-TSGT--LMILRHTAPLSSADR--EKLER-FSHSEGL- 228 S H G H+ L Q SG L + + L R E+L+R F + L Sbjct: 184 --TSYDEESHTGLVRHLFLRQGWHSGQRLLCFILNGRALPDEQRICEELQREFDLTTVLV 241 Query: 229 -------DLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALE 280 ++ L P + TV G D+ G+ L +F QVN + + A+A Sbjct: 242 NENTARTNVILGPHTH---TVLGPGVIEDTLAGVSLRMGVHEFYQVNTPAAEVLYAQART 298 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL--QNVTF 338 + +QPED +LDL+CGMG L + ++GVE VP VE + A GL Q F Sbjct: 299 YAALQPEDFLLDLYCGMGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAARLGLSPQRADF 358 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARD 397 ++ + D +++DP R G +Q I+++ P +V VSCN AT ARD Sbjct: 359 RCQDAGAAAAQLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAARD 418 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMV 427 + L + GY + +D+FP T H+E +V Sbjct: 419 TRWLTEHGYRAMEVQPVDLFPRTRHVECVV 448 >UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 Tax=Bacillales RepID=YFJO_BACSU Length = 466 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 118/446 (26%), Positives = 207/446 (46%), Gaps = 38/446 (8%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q +++ L G+GV K +F+PG LP E V T+ + +++ ++ + S Sbjct: 16 QTFPLTIKRLGINGEGVGYFKKKVVFVPGALPGEEVVVQATKVQPKFSEGRIKKIRKASE 75 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSK-SAALARLMKH--------DVSEVIA-DVP 124 R P CP + CGGCQ QH + Q R K + L +H ++ E I D P Sbjct: 76 HRVAPPCPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNP 135 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 W YR +++ + ++ + G S DIV +K C + P VR L Sbjct: 136 WNYRNKSQFQIGR-SQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFN 194 Query: 185 AM-----RHLGHVELVQA----TSGTLMILRHTAPLSSADREKL-----ERFSHSEGL-- 228 + G V + +G + ++ TA + +E++ +R + + Sbjct: 195 VSVYNERKRKGDVRTIVTRVGFETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQ 254 Query: 229 DLYLAPDSEIL----ETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 ++ A S I + ++G+ + G + S R F Q+N K+ + Sbjct: 255 NVNGAKTSVIFGEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAAQ 314 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + +++V+D +CG+G + +A A V G++ + ++ ++NA+ +G+ N T+ Sbjct: 315 LTGKEKVVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTA 374 Query: 344 EEDVTKQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 E + K W K GF D V++DP R G + + I K++P R VYVSCNP+TLA+D + Sbjct: 375 EHWLPK--WTKEGFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQT 432 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESM 426 L K Y + + +DMFP T H+E++ Sbjct: 433 LSK-DYRVDYIQPVDMFPQTAHVEAV 457 >UniRef50_C7LUG8 Deoxyribonuclease/rho motif-related TRAM n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LUG8_DESBD Length = 389 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 130/436 (29%), Positives = 203/436 (46%), Gaps = 64/436 (14%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHN-GKTLFI-PGLLPQENAEVTVTEDKKQYARAKVVR 68 +T ++T+ V L G+G+AR + G+ + I PG+LP+E +V VT+ K + +A+ V+ Sbjct: 2 STVGDLLTLKVEKLLWRGRGLARQDSGQVVMIEPGVLPEEVVDVRVTKTAKDFLQAEAVK 61 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIAD-- 122 S SP R CPH CGG + + + + K+ AL R + D I + Sbjct: 62 IQSPSPLRGIHPCPHAADCGGSRFGMVAPETGTQLKADILRDALPRALGRDHGLRIPELR 121 Query: 123 -VP----WGYRRRARLSL-NYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKV 176 VP W YR+R ++ + + LP MG S+D+V + C +LA L + +P + Sbjct: 122 VVPSPQGWRYRQRGQIHVASGLPHA----MGH---ASNDLVPLTDCHLLAAPLASAMPAL 174 Query: 177 RACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS 236 L G I A + ER D L P S Sbjct: 175 AKGL-----------------PDGRFTI----AASPDTGQTATER-------DNVLLPFS 206 Query: 237 EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + GL L P F Q N +NQ +V ++ L +R+ DLF G Sbjct: 207 ------------FPDFGLTLQLPPSTFFQANWALNQHLVRSTVDAL--HGFERIADLFSG 252 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 GNF LPLA++ SV+ VEG V+ G +NA L++VTF NL + + Sbjct: 253 AGNFALPLASRGKSVLAVEGSAPAVDTGMRNADRLALKSVTFRDANLAKPAAWKMVEDFA 312 Query: 357 FDKVLLDPARAGAAGVMQQIIKLEPI-RIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 +LDP R GA G+ + ++ + + R+ +VSC+ RD++ LL AG++I+ L + D Sbjct: 313 PRAAILDPPRTGAKGIGRTLLGMPGLERLAWVSCDVVNTVRDAKPLLAAGWSISSLTLFD 372 Query: 416 MFPHTGHLESMVLFSR 431 MFP T H+E +++ R Sbjct: 373 MFPGTWHMEVLMILDR 388 >UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Lactobacillales RepID=B1N060_LEUCK Length = 473 Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 129/464 (27%), Positives = 210/464 (45%), Gaps = 47/464 (10%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 Y K T Q + V D+ G GV + + +F+ +P E +V +T+ K YA Sbjct: 20 YKTKVPVTKNQQVEAEVVDITYQGMGVIKIDNFPIFVIDAIPGEVVQVGITKVLKSYAFG 79 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQ-----QQHASVDLQQRSKSAALARL-MKHDVSE 118 +V++R+ SP R + G + A + +QR ++ + +V+ Sbjct: 80 RVIKRVKASPNR-AENVDKVAITTGIAPLANLKYEAQLTFKQRQVEQLFKKVNVSVEVNP 138 Query: 119 VIADV-PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 I P YR +A++ + + QL+ GF + GS ++ V+ I P+++ + R Sbjct: 139 TIGMTDPTKYRNKAQVPVQMV--NGQLETGFYRRGSHKLMPVEDFYIQDPKVDEAVSVTR 196 Query: 178 ACLGSL-----QAMRHLGHVELVQATSG------TLMILRHTAPLSSADR---------E 217 L L H G V + A G ++I+ +T L AD Sbjct: 197 DVLRDLGISAYDEETHKGVVRHIMARRGFYSHELMVVIITNTKKLPEADNIAAALRAKLP 256 Query: 218 KLERFSHSEGLDLYLAPDSEIL-----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVN 271 +L+ F H+ D+ ++ ETV G +D G P F Q+N Sbjct: 257 ELKSFIHNIN-----NHDTNVIMGQWNETVWGADEIHDQLMGKDFIIGPNSFYQINPQTT 311 Query: 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN 331 + A E ++P D V+D + G+G TL +A Q A V GVE V V ++NA+ N Sbjct: 312 AVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSIADQVAKVYGVEVVEDAVLDAEKNAQNN 371 Query: 332 GLQNVTFYHENLEEDVTKQPWAKNGF--DKVLLDPARAGAAG-VMQQIIKLEPIRIVYVS 388 + NV F + E +T+ WA +G D V +DP R G ++ + ++P VY+S Sbjct: 372 HIDNVEFVTADAPEQMTQ--WAADGLKPDVVFVDPPRKGLTNELISAVSAMQPKTFVYIS 429 Query: 389 CNPATLARDSEALLKAGYTI-ARLAMLDMFPHTGHLESMVLFSR 431 CNPATLARD+ +L G+ I + +D FP T H+ES+++F R Sbjct: 430 CNPATLARDTVQILAEGFHIDGPIQPIDQFPQTTHVESVLIFKR 473 >UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8X8_9DELT Length = 465 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 125/459 (27%), Positives = 203/459 (44%), Gaps = 50/459 (10%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 ++ + L G+GVA +G +F+ G LP + +T KK++A L+ S Sbjct: 8 LVQCEIESLAYGGRGVAHVDGMAVFVAGGLPGDTVSARITRSKKRFAEGVAEAVLTPSIH 67 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--DVSEVIADVP------WGY 127 R P C HFG CGGC QH + Q K+A +A + V +++ D P WGY Sbjct: 68 RVEPLCAHFGTCGGCALQHLAYPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGSPDIWGY 127 Query: 128 RRRARLSLNYLPKTQQLQMGFRK---AGSS---DIVDVKQCPILAPQLEALLPKVRACLG 181 R + + + + L +G R+ GS+ ++D+ QC + A ++ VR Sbjct: 128 RNK--MEFAFEQREDGLHLGLREPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVAVRQFCA 185 Query: 182 SLQAMRH--------LGHVELVQATSGTLMI-------------LRHTAPLSSADREKLE 220 + + H+ + A +G +M+ ++ A L +L Sbjct: 186 ATGVPAYNPATESGFWRHLVIRHAAAGEVMVHLITARDERKDNLIKDMAELFLQRFPELA 245 Query: 221 RFSHSEGLD-LYLAPDSEILETVSG----EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMV 275 F HS + +A +I+ ++ E +R SP F Q N G ++ Sbjct: 246 SFVHSTRVKRTTVAFGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELF 305 Query: 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335 E+ + +LDL+CG G + LA +A V+G E V K +++ARLNGL N Sbjct: 306 GTVAEFCALSDTHVLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTN 365 Query: 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQ-----IIKLEPIRIVYVSCN 390 +F +LE+ + +A +G V M + ++ L RIV VSC+ Sbjct: 366 CSFVSGSLEQGIPG--FAGSGDQAVPDVVVVDPPRSGMHEKTAEALLALGAPRIVAVSCD 423 Query: 391 PATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 PATLARD + L Y + R+ +DMFPHT H+E++ L Sbjct: 424 PATLARDVKRLADR-YHVTRVRAVDMFPHTHHIETVALL 461 >UniRef50_Q2WAJ3 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=4 Tax=Magnetospirillum RepID=Q2WAJ3_MAGSA Length = 438 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 129/429 (30%), Positives = 206/429 (48%), Gaps = 31/429 (7%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + + ++V+ + + G G+AR +G+T+F+P + + V + A ++ L P Sbjct: 19 RTVELTVDQVGARGDGIARLDGETVFVPFTVAGDRVLARVEGKRGDGLTAALIEVLEPGP 78 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-ARLMKHDVSEVIAD----VPWGYRR 129 R TP C H+G CGGC QH L K L +L + ++E I + +P RR Sbjct: 79 GRATPPCAHYGRCGGCSLQHLDDALYAEWKRDLLVTQLARQGLAEAIVEPLVRIPPASRR 138 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 RA + + +GF S +VD+++CP+L P L LP +R LG + A+ Sbjct: 139 RATFAFTR--AKGAIVLGFNGRASHTVVDIERCPLLDPALGDALPGLRKLLGGI-AIEGG 195 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDL----YLAPDSEILETVS-G 244 G + L G +++ A L +RE L + S LDL + P + ++E ++ Sbjct: 196 GDLTLTLTEGGLDVLVEAPARLDLFERETLAEAAAS--LDLARLHWRRPGTGLVEPIARR 253 Query: 245 EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED-RVLDLFCGMGNFTLP 303 G+ + +P F+Q G + +A A+ L P+D V DL+ G G+F+LP Sbjct: 254 RAALVHFGGIAVEPAPGGFLQPTRG-GELAIAEAI--LSATPKDVPVADLYSGCGSFSLP 310 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN---GFDKV 360 LA + V VEG E+G A + + D+ ++P A + GF + Sbjct: 311 LALR-GPVRAVEG-----EQGPVAALEAAARAASLPLTAEVRDLARRPLAAHELKGFRAI 364 Query: 361 LLDPARAGAAGVMQQIIKLE---PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 +LDP RAGAA ++ + P I VSCNPATLARD L G+ I R+ +D F Sbjct: 365 VLDPPRAGAAAQAAELARPSPGGPTTIAMVSCNPATLARDLRTLCDGGWRIKRVVPIDQF 424 Query: 418 PHTGHLESM 426 P + HLE++ Sbjct: 425 PWSAHLEAV 433 >UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQ01_9SPHI Length = 476 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 136/473 (28%), Positives = 222/473 (46%), Gaps = 50/473 (10%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFI------PGLLPQENAEVTVTEDKKQY 61 K T ++ V ++ + + G+ + R + +F+ PG+ P + ++ +T KKQY Sbjct: 4 KIHKTPERLAHVRIDAVAAEGKCIVRTDEGVIFVENPTGGPGVAPGDVVDLRITNTKKQY 63 Query: 62 ARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVS 117 A R S R P C HFG CGGC+ QH Q K L R+ K ++ Sbjct: 64 REAVAERVHEWSAVRTEPFCEHFGTCGGCKWQHIQYSEQLGFKHQQVVDHLTRIGKVELP 123 Query: 118 EVIADVPWG----YRRRARLSL---NYLPKTQ--------QLQMGFRKAGSSD-IVDVKQ 161 E +P YR + + +L + Q +GF G D ++ ++ Sbjct: 124 EFRPIMPAHPTQYYRNKLEFTCAEGRWLTSAEVGTNQPMDQRAVGFHVPGRFDKVLPIRH 183 Query: 162 CPILAPQLEALLPKVRACL----GSLQAMR-HLGHVE-LVQATSGTLMILRHTAPLSSAD 215 C + A+ + A + +L ++ H G + L+ T+ T + T ++ + Sbjct: 184 CYLQPDPSNAIREAIDAYVLQHDMTLYNLKMHTGFLRTLIIRTADTTQQVMVTLQVAQDN 243 Query: 216 REKLERF-SHSEGLDLYLAPDSEILETVSGE------------MPWYDSNGLRLTF--SP 260 E L ++ + L + + IL T + P+ + LTF P Sbjct: 244 PELLNGLMTYLQTLFPQITSLNYILNTKKNDSYQDQEVVNWAGKPYIEEQMEALTFRIGP 303 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 + F Q NA + A E+ + ++RV DL+ G G L +A A VVGVE V A Sbjct: 304 KSFYQTNAQQAYNLYKVAREFAGLTGQERVYDLYTGTGTIALFVARLAKHVVGVEYVEAS 363 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPARAGA-AGVMQQIIK 378 V + NA++NG+ N TF +++ +T + +A++G D V+ DP RAG V +Q++K Sbjct: 364 VADARVNAQVNGIANTTFVAGDMKAILTDEFFAEHGRPDVVITDPPRAGMDEAVTRQLLK 423 Query: 379 LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 P RIVYVSCN AT ARD A+L GYT+ + +DMFPHT H+E++V+ ++ Sbjct: 424 AAPERIVYVSCNTATQARDL-AILDEGYTVTGVQPVDMFPHTHHVENVVVLTK 475 >UniRef50_Q73JF6 Uncharacterized RNA methyltransferase TDE_2619 n=1 Tax=Treponema denticola RepID=Y2619_TREDE Length = 404 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 116/432 (26%), Positives = 188/432 (43%), Gaps = 86/432 (19%) Query: 35 NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQH 94 +GKT+F+P LP E E+++ ++ K Y K+ + L SP R PRCPHF VCGGC Q Sbjct: 23 DGKTVFVPYSLPDEVLEISIVKEHKNYTEGKIEKILEVSPHRVEPRCPHFYVCGGCNLQT 82 Query: 95 ASVDLQQR-SKSAALARLMK--------------------HDVSEVIADVPWGYRRRARL 133 A + Q KS AL L + + S ++ W YR R + Sbjct: 83 ADDEYQHFLRKSMALEALDRALSLNKEKAVFEKQALEKSFFEKSIFVSGPDWDYRARFQF 142 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 Y+ K L + ++ SS V +K CPI P A+R+L Sbjct: 143 ---YIDKDGSLSL--KENKSSGSVKIKDCPIAVP-----------------AIRNLLKSN 180 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG 253 L + T + + + +D EK+ +++ ++ LA G Sbjct: 181 LKEYTPNSRIHI-------FSDGEKIFTQDNAKDCEVRLA-------------------G 214 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 R+ F+P F Q N + +K++ E+ ++ VLD + G+G F+L QA + Sbjct: 215 KRIKFNPLGFFQSNLEMTEKLINTIFEYAEISSS--VLDFYSGVGTFSLFAYDQAKEIHL 272 Query: 314 VEGVPALVEKGQQN-------------ARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 VE + Q+N + NG + FYH ++ K +K FD V Sbjct: 273 VEHNKHALAYAQENFLINSSSSGIVREKKENGFPKI-FYHALDGKNWAKTKESKLKFDTV 331 Query: 361 LLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 +DP R G + + +I Y+SC+P T ARD+ +LL +GY + + + D +P Sbjct: 332 FVDPPRIGIDKEALSWLCSSGTRQIFYISCDPVTFARDTASLLVSGYKLEKHFLFDFYPQ 391 Query: 420 TGHLESMVLFSR 431 T H+E++ +F + Sbjct: 392 THHIETLGIFRK 403 >UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRP4_DESVM Length = 479 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 135/475 (28%), Positives = 205/475 (43%), Gaps = 54/475 (11%) Query: 11 TTTR--QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 TT R ++ ++V+ L + G+ V RH G+ +F+ G LP + +T K+++A A + Sbjct: 4 TTPRPGDLLELTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDA 63 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALAR---LMKHDVSEVIA 121 L SP + P C HFG CGGC Q Q R K AL R L +V ++A Sbjct: 64 VLEPSPVQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILA 123 Query: 122 D-VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR--- 177 G+R + + + + QL +G R+ S +VD+ +C + P ++ VR Sbjct: 124 SPAERGFRNKMEFAFSQ-DRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELA 182 Query: 178 --ACLGSLQAMRHLGHVELV---------------------QATSGTLMIL-----RHTA 209 + L R G + Q T G ++ RH Sbjct: 183 RESGLPGWDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPG 242 Query: 210 PLSSADR--EKLE-RFSHSEGL--DLYLAPD----SEILETVSGEMPWYDS-NGLRLTFS 259 + R E L RF G+ L L P+ E + V GE + G L Sbjct: 243 AAQAVSRLAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLG 302 Query: 260 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 P F Q N + A P+D V DL+ G+G L LA A +V G E P Sbjct: 303 PDSFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPE 362 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEEDVTKQ-PWAKNGFDKVLLDPARAGA-AGVMQQII 377 V + NA N + N +F ++ + ++ P V++DP RAG V++ + Sbjct: 363 AVNDARANAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVS 422 Query: 378 KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 +P RIVYVSCNPAT+ARD+ GY + +D+FPH+ H+E + L +R Sbjct: 423 AHQPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTRT 477 >UniRef50_Q0BSI6 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BSI6_GRABC Length = 413 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 123/428 (28%), Positives = 198/428 (46%), Gaps = 32/428 (7%) Query: 17 ITVSVNDLDSFGQGVARHNGK--TLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 I + V L + GV G T+++P L E EV+ + ++ R L SP Sbjct: 3 IALRVARLGAEADGVCPAEGDHPTIYVPYALDGELVEVSEAGKRGDALIGQIERILEPSP 62 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADV------PWGYR 128 R P C HFG+CGGC QH D K+ +A +K +V++D P R Sbjct: 63 HRVEPVCQHFGICGGCAMQHTD-DGGLGWKAGQVASALKAVAPDVLSDAFSTWQSPPAVR 121 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 RR L KT +++G +A S++IVD++ CP++ P L L+ +R L +L ++ Sbjct: 122 RRIDFGLRRSGKT--VRVGLHRARSAEIVDIQHCPVIDPSLMELIAALRIVLPTLALLKR 179 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD-LYLAPDSEILETVSGEM- 246 G +G ++LR S DR L F+H GL + A V ++ Sbjct: 180 EGSAVANMTENGIDLLLRTDRLPSVEDRTLLAAFAHQHGLARISWAEGERGRPEVLCQLR 239 Query: 247 -PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 P +G +T P F+Q + ++A A+E + ++++LF G+G FTL L Sbjct: 240 DPVITFSGHSITAPPGAFLQASRAAEDAIMA-AIEAGLPKKRRKIVELFAGIGTFTLRLK 298 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK---NGFDKVLL 362 P + +G + A + ++ F + D+ +QP G D V+L Sbjct: 299 ------------PGMAYEGDEAA-VAAVKRAGF-GQITRRDLFRQPLQAAELRGVDVVIL 344 Query: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 DP AGAA + + + RI+YVSCNP L RD+ L AGY + +++D F + Sbjct: 345 DPPHAGAAAQCATLAQAKVPRIIYVSCNPHALRRDATLLAGAGYRLVSASVIDQFLWSTQ 404 Query: 423 LESMVLFS 430 +E++ +FS Sbjct: 405 IETVAVFS 412 >UniRef50_Q0F1X5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1X5_9PROT Length = 415 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 125/425 (29%), Positives = 194/425 (45%), Gaps = 21/425 (4%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 +IT + G+ + R G T+ + +P + V + ++ R ++ P+ Sbjct: 2 MITGIAESILPGGETLVRTEGHTMLVANAVPGDELSVRPLQKRRGVLRGEITTVNKPGPQ 61 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIAD-VPWGYRRR 130 R + CP G CGGC Q + KSA A L+ V A+ V RRR Sbjct: 62 RVSAECPVAGECGGCALQFLAPQSHAALKSAWVHDAFRALIGVQTQWVEAETVAAASRRR 121 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEAL---LPKVRACLGSLQAMR 187 +N Q GF S ++ +QC +L P L+ L L + A L +Q ++ Sbjct: 122 VHWMVNR--DEQGSFAGFYAHASHRVIRHEQCMVLTPGLQRLHSELLQHPALLSGVQGIQ 179 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMP 247 L + + + PL AD ++ + D P + ++ +P Sbjct: 180 ALELADGMHVVLEGAITEASGLPLMCADL-PVQWWRRQ---DDVTRPLNRPVQRFHDRLP 235 Query: 248 WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT- 306 + + L L P DF+Q N+K++A +W P R+ DLFCG+GN +LPLA Sbjct: 236 AGEQDIL-LAVGPDDFVQGQEAGNRKLIALIQQW--AGPVRRIADLFCGIGNLSLPLAVA 292 Query: 307 QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 366 A + G E PA V Q NA+ G+ N +F NL ED +P+ G D ++LDP R Sbjct: 293 TGAELFGAELNPASVRAAQTNAKRLGI-NASFVQANLFEDFNMEPYI--GADLLILDPPR 349 Query: 367 AGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 GA + +I L P +I+ +SC+PA ARD L + GY + L LD+F + GH+ES+ Sbjct: 350 RGAKRICSRITHLMPKQIIMISCDPAAGARDGVMLQQQGYQLKALQALDLFAYAGHVESL 409 Query: 427 VLFSR 431 L+ R Sbjct: 410 SLWER 414 >UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMY7_9FIRM Length = 493 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 120/450 (26%), Positives = 205/450 (45%), Gaps = 36/450 (8%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 I+ + + L S G+ + +G +F+P + EV + + K Y K+ R ++ SP Sbjct: 5 DIVEIEITALSSECSGIGKKDGMVIFVPFSAIGDKLEVKILKVNKTYCYGKIERIITPSP 64 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARL--MKHDVSEVIADVPW-GY 127 +R TP CP + CGGC +H S + Q R+K A R+ + + +I + GY Sbjct: 65 DRVTPDCPVYTKCGGCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGY 124 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQC---PILAPQLEALLPKVRACLG--S 182 R + ++ + K L GF S IV ++C P + ++ A K+ L + Sbjct: 125 RNKLQIPIG-TDKDGNLIAGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGLNLTA 183 Query: 183 LQAMRHLG---HVELVQAT-SG----TLMILRHTAPLSSADREKLERFS---------HS 225 H G H+ L + SG +++ ++ + LE++ ++ Sbjct: 184 YDETTHKGILRHLYLRKGYYSGEICLCIVVAKNVPEIKILSDRLLEKYPEIVSSVINVNN 243 Query: 226 EGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 ++ L + +L + + N + + +P+ F QVN +++ + A ++ + Sbjct: 244 RDTNVILGDEEIVLTSKNYICDIMCKNAVNI--APKAFYQVNTPCAEQLYSSACDF--AE 299 Query: 286 PEDR-VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 P+ + VLDL+CG G L +A A ++GVE VP +E +QNA NG+ N F + Sbjct: 300 PKGKTVLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAA 359 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 E D +++DP R G +QI RIV VSCN AT ARD + Sbjct: 360 EAARILHSRNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACFAE 419 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 GY+ + +DMF T H+E++VL S K Sbjct: 420 LGYSTDKCVAVDMFSGTNHVETVVLLSHKK 449 >UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzyme n=18 Tax=Firmicutes RepID=Q03VV3_LEUMM Length = 464 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 128/461 (27%), Positives = 210/461 (45%), Gaps = 41/461 (8%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 Y K Q I +V D+ G GV + + +F+ +P E V+VT+ K YA Sbjct: 8 YKTKAPVAKNQEIEATVIDITYQGMGVVKVDNFPIFVVDAIPGEIVRVSVTKVLKSYAFG 67 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-----DVSEV 119 +V RR+ +S R G + + Q K + L K DV+ Sbjct: 68 RVTRRIQESENRVQNANKIAITTGIAPLANLKYEAQLAFKQHQIEELFKKVNVDVDVAPT 127 Query: 120 IA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 I + P GYR +A++ + + +L+ GF + GS +V ++ I P+++ + R Sbjct: 128 IGMENPTGYRNKAQVPVQMI--NGKLETGFYRRGSHRLVPIEDFYIQDPKVDEAVRITRD 185 Query: 179 CLGSLQA-----------MRHLGHVELVQATSGTLMILRHTAPLSSAD--REKL-----E 220 L L +RH+ + ++I+ +T L ++D EKL E Sbjct: 186 ILRELGVSAYEEETKKGVIRHIMARRGYYSHELMVVIITNTKKLPNSDLIAEKLSAKLPE 245 Query: 221 RFSHSEGLDLYLAPDSEIL-----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKM 274 S ++ + D+ ++ ET+ GE +D G P F QVN + Sbjct: 246 LKSVIHNINNH---DTNVIMGQWNETIWGEDDIHDQLMGKDFVIGPNSFYQVNPQTTSTL 302 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 A A E +++P D V+D + G+G TL +A + + GV+ V +E ++NA+ N + Sbjct: 303 YALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVEGAIEDAEKNAKNNQIT 362 Query: 335 NVTFYHENLEEDVTKQPWAKNGF--DKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNP 391 N F + E + K WA G + V +DP R G + +K + P + VY+SCNP Sbjct: 363 NAEFVLADAPEQMAK--WADEGLKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISCNP 420 Query: 392 ATLARDSEALLKAGYTI-ARLAMLDMFPHTGHLESMVLFSR 431 ATLARD+ +L AG+ I + LD FP T H+ES+ +F + Sbjct: 421 ATLARDAVQILAAGFEIEGAVQPLDQFPQTTHVESITVFKK 461 >UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=11 Tax=Lactobacillus RepID=Y1698_LACJO Length = 450 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 119/447 (26%), Positives = 208/447 (46%), Gaps = 34/447 (7%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 QI+ + + DL GVA +G T+F+ LP E + + KK +A AK+ + +SP Sbjct: 5 QIVDLEITDLSYEAMGVAHLDGMTVFVNNALPGEIVSAKLLKVKKNFAFAKIEKIKKESP 64 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-KHDVSEVIA--DVP----WGY 127 +R + + G H D Q K + L+ K D+ V +P GY Sbjct: 65 DRINVKLRQWVQTGLASLAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGY 124 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL-----GS 182 R +A++ + + +L +GF + S D+V + P+++ +L KVR L + Sbjct: 125 RNKAQVPVREV--NGKLDIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPA 182 Query: 183 LQAMRHLGHVELVQ-----ATSGTLMILRHTAPLSSADREKLERFSHSEGL-DLYLAPDS 236 + + G V ++ AT ++IL +E + S +G+ + L + Sbjct: 183 YDEIHNKGEVRYLEVRRSKATGEIMVILVCLHKDFPQLKEVTKEISEIKGVTSVVLNHNP 242 Query: 237 EILETVSGEMPWY--------DSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + + G+ + D G + SP+ F Q+N+ ++ A++ D++P+ Sbjct: 243 KKTNVILGKKDYLLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPD 302 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 D V+D + G+G L +A +V G+E + VE NA+LNG+ N + EE + Sbjct: 303 DVVIDAYSGIGTIGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVM 362 Query: 348 TKQPWAKNGF--DKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 + WAK G D + +DP R G + ++ P +IVY+SCNPAT+ RD + + Sbjct: 363 PR--WAKEGLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQ 420 Query: 405 GYTIARLAMLDMFPHTGHLESMVLFSR 431 GY + +DMFP T H+E++ + R Sbjct: 421 GYDFDEIDPVDMFPQTPHVEAVAVLER 447 >UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G9_UNCTG Length = 449 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 125/460 (27%), Positives = 205/460 (44%), Gaps = 63/460 (13%) Query: 14 RQIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 +II VS + G+ + R +G LF GLLP E A+V V ++KK + A + S Sbjct: 5 NKIINVSAEKIVFPGRSLCRCSDGIVLFSEGLLPGEAADVLVIKEKKTFREALLKNITSK 64 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---DVSEV-IADVPWGYR 128 S ER P CP FG CGGC Q+ S + Q + K ++ L+ +S++ I+ W YR Sbjct: 65 SAERIEPLCPSFGFCGGCSFQNISYESQIKYKQEYISELLNFAGVKISKILISPQIWHYR 124 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 + S F G +D+ C + + ++ P A G LQ + Sbjct: 125 NKMEFSF------------FNNKGIADLG--LHCKGMFNRYVSVPPCFIADKGFLQVVET 170 Query: 189 L-----GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD---LYLAPDSEILE 240 + G+ V RH + + + + +D ++L P + L Sbjct: 171 VKRFANGNNFSVYNNKTHEGFFRHLVLRKAGNNNQFLINVITNVVDCESVFLEPLIKELS 230 Query: 241 TVSGEMPWYDSNGL--------RLTF----------------------SPRDFIQVNAGV 270 S + W SNG RLT SP F Q N+ Sbjct: 231 EFSCSIYW-TSNGRKSDAVLADRLTLMCGKPFITERLNIGGKDYFFDISPFSFFQTNSKA 289 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 + + L L+ +LDL+CG G + +A V+GVE + ++ ++NA Sbjct: 290 TEILYTEILRLLNPSKYTVLLDLYCGTGAIGISMAHNVKRVIGVECIGQAIDNAKENALA 349 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSC 389 N + N FY + E+ + + K+ FD V++DP R+G +++ +++ + RI+YVSC Sbjct: 350 NNVFNAEFYASDAEDWIKEN---KSCFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSC 406 Query: 390 NPATLARDSEALLK-AGYTIARLAMLDMFPHTGHLESMVL 428 NP+TLARD + + + + I + +DMFP T H+E++VL Sbjct: 407 NPSTLARDLQLITENSKCKIKEIIPVDMFPQTYHIETVVL 446 >UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7H7_9ACTN Length = 442 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 114/424 (26%), Positives = 188/424 (44%), Gaps = 34/424 (8%) Query: 35 NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQ--- 91 NGK +F+ G + + E V +D K + RA+ L S +R P CP G+CGGC Sbjct: 25 NGKAVFVQGAVAGDTVEAEVVQDGKSFMRARTTEILEPSLDRIQPPCPFVGICGGCSWGN 84 Query: 92 ----QQHASVDLQQRSKSAALARLMKHDVSEVIADV-----PWGYRRRARLSLNYLPKTQ 142 Q A+ + RS + + V E++ + WGYR + L + Sbjct: 85 LSRTAQLAAKEQNLRSTLERIGKFAPEQVDELVQPICHTKDDWGYRNKIELEPTVV--NG 142 Query: 143 QLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG--HVELVQATSG 200 ++++G S IV V CP+ + L V L L +LG V + + Sbjct: 143 RVRLGMHGVDPSKIVAVDSCPLFDKRFPKALKSVVGALNYLSGSHNLGLERVGIRASRRT 202 Query: 201 TLMILRHTAPLSSADREKLERF----SHSEGLDLYLAPDSEI------LETVSGEMPWYD 250 + + P S R ++ R +H + ++ + +E ++GE W + Sbjct: 203 KALEVALWTPTGSFPRSQVSRVLADAAHPTSIVRVMSKGEKKARRVSKVEMLAGEGSWTE 262 Query: 251 SNGL-RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 + ++ S F QVN + ++ +E LD Q ++ +DL+CG G FTLPLA + Sbjct: 263 NIAEGQMRLSAPSFFQVNTKGAEILIELVMEALDPQEDELAVDLYCGAGTFTLPLARRCD 322 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG- 368 V VE V ++N +N L NV + + Q D +++DP RAG Sbjct: 323 FVAAVEAYGPAVRDLRRNLEINKLDNVDVIGGDAVREFPDQ-----DADVLVVDPPRAGL 377 Query: 369 AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMV 427 A + I + YVSC+PATLARD + ++ G ++ ++ +D+FP T H E++V Sbjct: 378 APEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFSPVKITPVDLFPQTFHCETVV 437 Query: 428 LFSR 431 R Sbjct: 438 HLKR 441 >UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE25_KOSOT Length = 440 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 125/439 (28%), Positives = 197/439 (44%), Gaps = 29/439 (6%) Query: 20 SVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 +V L S G AR NGK + + LP E E + K+ K VR + SP+R+ Sbjct: 5 TVEKLISDGYSFARDENGKVVLLTEGLPGETVEAVKLKGKESVEFWKTVRVVQSSPDRKI 64 Query: 79 PRCPHFGVCGGCQ----QQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLS 134 C F CGGC Q + ++R R+ K +P R Sbjct: 65 KGCKGFPDCGGCDWGGLQYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNR 124 Query: 135 LNYLP--KTQQLQMGFRKAGSSDIVDVKQCPI-------LAPQLEALLPKVRACLGSLQA 185 + Y+ K +++ G K S+++VDV+ C + + E +L + + ++ Sbjct: 125 MEYVAYQKGKKIGFGMYKRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNRES 184 Query: 186 MR-HLGHVELVQATSGTLMIL----RHTAP-LSSADREKLERFSHSEGL-DLYLAPDSEI 238 R L H+ L +G ++ L R + P + RE E+ L ++ + D + Sbjct: 185 KRGFLKHLVLRGNRNGDIVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDDVV 244 Query: 239 LE----TVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 L + GE ++ G P F Q N V ++++ + L+ P + LDL Sbjct: 245 LRGPYRVIYGEGIITETLGDAVFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFLDL 304 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 + G+G F A VV VEG+ NAR+N + N+ + + + + K Sbjct: 305 YSGIGTFAFYFARMFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDFLEKN--- 361 Query: 354 KNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 + FDKV+LDP RAG ++ I K P RIVY+SCNP TLARDS L G+++ L Sbjct: 362 EEKFDKVILDPPRAGIGKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKALRA 421 Query: 414 LDMFPHTGHLESMVLFSRV 432 DMFP T H+E + +F+RV Sbjct: 422 FDMFPDTHHVEVVAIFNRV 440 >UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5A4_9BACT Length = 508 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 120/465 (25%), Positives = 220/465 (47%), Gaps = 57/465 (12%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + + D+ + G+ +AR + +F+P +P + ++ V + K Y A+VVR + S R+ Sbjct: 49 NILITDVAAEGKSLARIDDMVVFVPFAVPGDVVDLQVRKKKHHYCEAEVVRFIKYSDVRQ 108 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSE----VIADVPWGYRR 129 TP+C HFG+CGGC+ Q + Q ++K L R+ K ++ E + ++ + YR Sbjct: 109 TPKCQHFGICGGCKWQMLPYEEQLKAKQKQVHDQLERIGKIELPEFRPIMGSEKTYEYRN 168 Query: 130 RARLS------LNYLPKTQQLQ------MGFRKAGSSD-IVDVKQCPILAPQLEALLPKV 176 + L + T ++ +GF G+ D I +++C ++ + L ++ Sbjct: 169 KLEFGCSNKRWLTWEEVTSGVKYDHMNAIGFHITGAFDKIYPIEKCWLM----DDLCNQI 224 Query: 177 RACLGSLQAMRH-------------LGHVELVQATSGTLMILRHTAPLSSADREK----L 219 R C+ A+ H L + + A +G M+L D ++ L Sbjct: 225 RNCIRDY-AIDHDISFFDLRAQTGLLRDIMIRSANTGEWMVLVQFKFQEEGDEQRAHGLL 283 Query: 220 ERFSHS-EGLDLYLAPDSEILETVSGEMPWYDSNG----------LRLTFSPRDFIQVNA 268 + + S + L D++ G+ G L+ + + F Q N Sbjct: 284 QHVADSFPQITSLLYVDNQKCNDTFGDQTVVVFKGKDHITETMGDLKFKVAAKSFYQTNT 343 Query: 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA 328 + + A E+ + ++ V DL+ G G +A +A V+G+E V ++ + N+ Sbjct: 344 NQAYHLYSVAREFAQLTGKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAIKDAKVNS 403 Query: 329 RLNGLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPARAGA-AGVMQQIIKLEPIRIVY 386 N + N FY ++++ +T++ A++G D ++ DP RAG V++ I+ P RIVY Sbjct: 404 AANDIHNTQFYAGDMKDILTEEFIAEHGRPDVIITDPPRAGMHPDVVRTILGAAPQRIVY 463 Query: 387 VSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 VSCNPAT ARD + +L Y + + +DMFPHT H+E++VL + Sbjct: 464 VSCNPATQARDLQ-MLDEQYKVMAVQPVDMFPHTPHVENVVLLEQ 507 >UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desulfuromonadales RepID=A1ARE6_PELPD Length = 493 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 132/465 (28%), Positives = 203/465 (43%), Gaps = 55/465 (11%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 R + R + ++ LD G G++ L I G LP + + + ++ A V + Sbjct: 34 RLSPRSTVEARISGLDDEGYGISCAENHGLRIAGGLPGDTVQAVIDHVAQRMAFGHVKKI 93 Query: 70 LSDSPERET-PRCPHFGVCGGCQQQHAS-VDLQQRSKSAALARLMKHDVSEVIADVPW-- 125 L SP R P C C GC + D + + L +L + + I P Sbjct: 94 LVASPLRSRRPPCRESAHCLGCPLIAMNYCDQAEWKRQFVLRQLDAYRGLDGIELHPLLS 153 Query: 126 -----GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPI-----------LAPQL 169 YR RL++ K + +G + S D+VD+ CPI + + Sbjct: 154 PRRLTNYRTTVRLTIA--GKYAEPYIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRRGI 211 Query: 170 EALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERF------- 222 L V + + +R+L V V M++ TA S + L R+ Sbjct: 212 SRLKVPVYSPRNRVGLLRYL--VVRVSEAEQKAMVVFVTARRSYNEIHHLARYVREQLPE 269 Query: 223 --------SHSEG------LDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNA 268 + SEG +D +L P + E + GE+ L SPR F+QVN Sbjct: 270 VEVVAQNVNSSEGNVIMGPVDHFLTPKHHLTERI-GEVS--------LMISPRSFLQVNR 320 Query: 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA 328 + R EW + + VLDL+CG+G L LA +A V+GVE V A VE ++NA Sbjct: 321 DGACLIYERVAEWARLTGRETVLDLYCGIGGIALTLARRARRVIGVEVVEAAVEDARRNA 380 Query: 329 RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYV 387 R+NG+ N F ++ E + + G D V+L+P R G V++Q+ L P ++YV Sbjct: 381 RMNGISNCVFQAGDVAEQLEELAEDGEGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYV 440 Query: 388 SCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 SC+P TLARD L GY + +DMFPHT H+E++ +V Sbjct: 441 SCSPQTLARDLNLLKSLGYVCVEVQPVDMFPHTMHVENVARLEKV 485 >UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=88 Tax=Lactobacillales RepID=Y1717_STRR6 Length = 451 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 118/453 (26%), Positives = 207/453 (45%), Gaps = 52/453 (11%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 +Q I + + + G+G+ + +F+PG L E+ +T ++ + AK+++ S Sbjct: 6 KQKIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEDIYCQITSIRRNFVEAKLLKVNKKS 65 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---------HDVSEVIA-DV 123 R P C + CGGCQ H D Q K+ L + +K +++ I Sbjct: 66 KFRIVPSCTIYNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQE 125 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQC-------PILAPQLEALLP-- 174 P YR A+L Q++ G S +V++K C ++A +L LL Sbjct: 126 PKYYR--AKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYH 183 Query: 175 -----KVRACLGSLQAM----RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSH- 224 R LG M R G V+++ T+ L L+ +E ++ F Sbjct: 184 QIPITDERKVLGVRTIMVRRARKTGQVQIIIVTNRQL-------NLTQLVKELVKDFPEV 236 Query: 225 -SEGLDLYLAPDSEILETVSGEMPWYDSN------GLRLTFSPRDFIQVNAGVNQKMVAR 277 + ++ A SEI + E+ W + + SPR F Q+N + + + Sbjct: 237 VTVAVNTNTAKTSEIYGEKT-EIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSE 295 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 A++ LDV ED ++D +CG+G A + ++ G++ +P +E ++NA+ G N T Sbjct: 296 AVKALDVDKEDHLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDN-T 354 Query: 338 FYHENLEEDVTKQPWAKNGF--DKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATL 394 Y E++ + W K G+ D +++DP R G ++ I+ P ++VY+SCN +TL Sbjct: 355 HYEAGTAEEIIPR-WYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTL 413 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 ARD L++ Y + + +DMFPHT E++V Sbjct: 414 ARDLVRLVEV-YDLHYIQSVDMFPHTARTEAVV 445 >UniRef50_A6DJC1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJC1_9BACT Length = 403 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 126/435 (28%), Positives = 196/435 (45%), Gaps = 71/435 (16%) Query: 21 VNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETP 79 ++++ G G R +G+ F+P +P E +V++ +D K + R +++ + S R Sbjct: 9 IDNIAYGGDGAGRLDDGRVCFVPFSVPGEKVKVSIVKDNKNFCRGEILELVEASENRVEA 68 Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---------DVSEVIADVPWGYRRR 130 C +FG CGGC QH D Q + K A +++K DV V + W YR R Sbjct: 69 PCQYFGECGGCAYQHIDYDEQVKIKEAQFRQVLKRIGGLNIDEDDVEVVSSTNKWNYRNR 128 Query: 131 ARLSLN-YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 +SLN +T ++ GF + +V +K+C + + L+P + Sbjct: 129 --ISLNARRTETDEVIYGFIARDNRSLVRIKECLLAQAPVNELVPDLNKT--------KW 178 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY 249 GH + LR T +S+++E + + AP +PW Sbjct: 179 GHKNRQRDRP-----LRATIRHASSNKETVAFYGK--------APVG---------LPWR 216 Query: 250 DSNGLRLTFSPRDFI-------QVNAGVN---QKMVARALEWLDVQPEDRVLDLFCGMGN 299 R ++ R+F+ QVN V Q+M A + L+ V+D FCG G Sbjct: 217 -----REVYNDREFVMPAGSFSQVNRDVAEALQRMCAEIISSLEACT--FVIDAFCGSGF 269 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF-- 357 ++ L + VVG+E VE NA+ GL H+ + DV K + G Sbjct: 270 LSMGL--RDVKVVGLEIDAKGVEAANFNAQDQGLTT----HKYVAGDVNKLLRQRLGKLA 323 Query: 358 --DKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 ++LDP RAG G ++ I K P I+YVSC+P TL RD + +L GY +LAML Sbjct: 324 PETTLILDPPRAGVGPGTIKAISKRSPKWILYVSCDPGTLGRDLKEILPLGYKHKKLAML 383 Query: 415 DMFPHTGHLESMVLF 429 DMFP T H ES++L Sbjct: 384 DMFPQTSHFESLILL 398 >UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepID=C4Z8C9_EUBR3 Length = 418 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 109/411 (26%), Positives = 188/411 (45%), Gaps = 28/411 (6%) Query: 47 QENAEVTVTEDKKQYARAKVVRRLSDSPERETPR--CPHFGVCGGCQQQHASVDLQQRSK 104 Q N T ++K+Y +A RL + R CP+ CGGC Q Q ++K Sbjct: 5 QGNYRENPTRNEKKYKKANGQPRLKEKSSRAKSDNVCPYAKKCGGCDYQGVEYKEQLKTK 64 Query: 105 SAALARLMK-HDVSEVIADV--PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQ 161 A + +L+K E I + P YR + + + + Q + +RK + D+VD++ Sbjct: 65 QAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAYRK-NTHDVVDIES 123 Query: 162 CPILAPQLEALLPKVRACLGSLQAMRH--------LGHVELVQ--ATSGTLMILRHTAPL 211 C I + + ++ ++ L S + + L HV + + AT +++L +P+ Sbjct: 124 CMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYATGQIMVVLVLASPI 183 Query: 212 --SSADREKLERFSHSEGLDLYLAPDSEILETVSGE--MPWYDSN-------GLRLTFSP 260 S + K R H + L + + V G+ + Y G SP Sbjct: 184 LPSKNNFVKALRKKHPNITTVVLNVNDKKTSMVLGDRNITLYGKGFIEDKLCGCTFRISP 243 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 F QVN + + +A+ + ++R++D +CG G + A A V+GVE Sbjct: 244 GSFYQVNPVQTELLYEKAIHEAHLTGKERIIDAYCGTGTIGIIAAKNAGEVIGVELNRDA 303 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKL 379 + NA+ N ++N+ FY+++ + + + D V++DP R G+ + ++KL Sbjct: 304 IRDAVINAKRNDIRNIRFYNDDAGKFMVEMAQKGEKADVVIMDPPRTGSDEAFLSSVVKL 363 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 P R+VYVSC P TLARD + L K GYT+ R D FP T H+E++ + Sbjct: 364 SPERVVYVSCGPETLARDLKYLTKHGYTVKRATPYDCFPFTSHIETVCCLT 414 >UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=16 Tax=Fusobacterium RepID=Y1713_FUSNN Length = 464 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/434 (23%), Positives = 203/434 (46%), Gaps = 32/434 (7%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+G+ +NG +F+P +P++ E+ + KK YAR + + SPER F Sbjct: 31 GEGLGYYNGFAVFVPMSIPEDELEIEIISIKKTYARGLIKNIIKASPERIDNHKFTFEDF 90 Query: 88 GGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGYRRRARLSLNYLPK 140 GC + Q + K + +++ ++S+V+A Y R ++ + Sbjct: 91 YGCDFAMLKYESQLKYKRFMVEEVIRKIAGLSDIEISDVLASEDI-YNYRNKIIEPFSVY 149 Query: 141 TQQLQMGFRKAGSSDIVDVKQCPI-------LAPQLEALLPKVRACLGSLQAMRHLGHVE 193 ++ GF K S ++ +V + + + +L+ +L K + + + + Sbjct: 150 ANKIITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNI 209 Query: 194 LVQATSGT--LMILRHTAPLSSADREKLERFSHSEGLD----LYLAPDSEILETVSGE-- 245 +++ S +++L + + + +KL F E ++ +Y++ +S+ TV GE Sbjct: 210 MIRTNSNNEAMVVLIINSNKITENIKKL-LFKLRENIEEIKSIYISLNSKKTNTVIGEKN 268 Query: 246 MPWY-------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + Y + N + SP F Q+N +++ A+ + D ++D + G G Sbjct: 269 ILIYGEKSIKENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGTG 328 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 + +A +A V +E V + E G++ A+ NG++N+ F + +E+++ K D Sbjct: 329 TIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEKELVKLVNNNQKID 388 Query: 359 KVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 ++ DP R G ++ ++ +L +VY+SCNP+T ARD + + GY + +L +DMF Sbjct: 389 TIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVLKKLQAVDMF 448 Query: 418 PHTGHLESMVLFSR 431 P T H+E + L R Sbjct: 449 PQTSHIECVGLIER 462 >UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n=1 Tax=Prochlorococcus marinus RepID=Y965_PROMA Length = 419 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 120/422 (28%), Positives = 198/422 (46%), Gaps = 38/422 (9%) Query: 44 LLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQ----HASVDL 99 +LP E A V KK + A +++ + SP R P+C + CGGC Q H + Sbjct: 1 MLPGEEALVKCEYMKKNFCLASLIKIIKKSPLRVNPKCSFYSDCGGCSMQEIEPHYQFAI 60 Query: 100 QQRSKSAALARLMK-HDVSEVIADVP---WGYRRRARLSLNYLPKTQQLQMGFRKAGSSD 155 +++ AL+R+ K +D E I+ P + YR ++ + Y +G+ + S Sbjct: 61 KKKLLINALSRIGKLNDFPEPISITPSQFFHYRNKSTFPV-YNESYGNTIIGYYQRNSHK 119 Query: 156 IVDVKQCPILAPQLEALLPKVRACL-----GSLQAMRHLGHVELVQATSGTLMILRHTAP 210 IVD+ CP+L ++ L +R L + +R G + + SG Sbjct: 120 IVDIDNCPVLDHKINKALSDIRLILKDNHINADHDIRRKGGLRHISIRSGINTNEVLITF 179 Query: 211 LSSADREKL-----ERFSHSE----GL--DLYLAPDSEIL----ETVSGEMPWYDS-NGL 254 +S+ +KL + + SE G+ ++ P+++I E ++G YD + Sbjct: 180 VSNFSIKKLLFPITNKLNGSESNVVGILNNIQPKPNNKIFGATTEILTGRDYIYDKFCHM 239 Query: 255 RLTFSPRDFIQVNAGVNQKMVARALEWL-DVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 + F QVN +K + + + R++D + G+G ++PLA+ V+G Sbjct: 240 DILIGSTSFFQVNLVEAEKAINCIRNIISNTNKIVRIIDAYSGIGTMSIPLASDGYRVIG 299 Query: 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ-PWAKNGFDKVLLDPARAGA-AG 371 +E E +NA +N ++ +TF EN +DVTK P D ++LDP R G Sbjct: 300 IEINNEAHEIAIRNAEINNIKTITF--EN--QDVTKYLPKILLPNDFLILDPPRKGLDPS 355 Query: 372 VMQQIIKLEPIRIVYVSCNPATLARDSEALLKA-GYTIARLAMLDMFPHTGHLESMVLFS 430 ++ I KL PI I Y+SCNPATLARD +L+ Y+I + D FP T HLE++V Sbjct: 356 LIDVITKLMPIHICYLSCNPATLARDLSLILREHKYSIISITAFDFFPQTTHLETLVYLK 415 Query: 431 RV 432 R+ Sbjct: 416 RL 417 >UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI35_9BACT Length = 456 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 118/453 (26%), Positives = 208/453 (45%), Gaps = 41/453 (9%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 + I + + + G G+A GK +F+P + ++ +T +KK YA KV + +S S Sbjct: 2 KHIPNLEIKKMAMGGFGIAYAEGKAIFVPYTAVGDVVDIDITIEKKDYAYGKVTKYISYS 61 Query: 74 PERETPRCPHFGV---CGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPW----- 125 R +CP F CGGC Q + K+ L L + + + P Sbjct: 62 DSRVEVQCPSFAAEIPCGGCDWLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQI 121 Query: 126 -GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQC---PILAPQLEALLPK--VRAC 179 YR + + + +T ++ G S IV+ C P + QL L + ++A Sbjct: 122 KHYRNKVFMPVGKNYQTGKITYGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAK 181 Query: 180 LGSLQAMRHLG---HVELVQATSG-----TLMILRHTAPLSSADREKLE-RFSHSEGL-- 228 + + H G H+ + G L+ L P ++ +KL F +G+ Sbjct: 182 VEPYNEIEHKGQLRHIGFRCNSDGRQILVILVTLSGKLPFTNLLVKKLTTEFPQIKGIIQ 241 Query: 229 -------DLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALE 280 ++ L ++++L G YD+ GL+ + R F Q+N G + +++ + Sbjct: 242 NINRQKENVILGKETKLL---YGSENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQD 298 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + V + +LD +CG+G L LA + V+ +E P +E ++NA LNGL+NV+F Sbjct: 299 F--VNSNNVILDAYCGIGAIGLSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVI 356 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSE 399 +E++++ K D +++DP R+G ++ II+ E +I+Y+SC P TLARD Sbjct: 357 GKVEDNLSAV-LIKEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLN 415 Query: 400 ALLKA-GYTIARLAMLDMFPHTGHLESMVLFSR 431 L+ Y + L DMFP+T H+E + + Sbjct: 416 TLIAGEKYKVVFLQPFDMFPNTWHIECLAVLKH 448 >UniRef50_B8C918 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C918_THAPS Length = 387 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 108/413 (26%), Positives = 184/413 (44%), Gaps = 51/413 (12%) Query: 39 LFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVD 98 +FIP ++P E V + + Y+ A ++ + SP+R P C +CGGCQ QH ++ Sbjct: 4 IFIPNVIPGEVCRVRIYRNHASYSDADLLEIVQPSPDRIEPLCSLANICGGCQYQHINIG 63 Query: 99 LQQRSKSAALARLMKHDVSEVIADVP-----------WGYRRRARLSLNYLP-KTQQL-Q 145 Q++ K+ + L + D P +GYR + + + K+ ++ Sbjct: 64 RQRQMKTEQVQELFERIGGLKAEDFPTVLDTLGTEEVFGYRSKITPHYDVITNKSCEIGP 123 Query: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMIL 205 +GF++ S +VDV C I P + L KVR + +L + G ++L Sbjct: 124 IGFKEKASRRLVDVPYCHIATPDINTALSKVRE-----ETRDKAVQGKLKKPAKGATLLL 178 Query: 206 RHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQ 265 R +GL +ET L F +F Q Sbjct: 179 RDAG----------------DGL----------VETNHVAYVNTTVKDLTFRFQAGNFFQ 212 Query: 266 VNAGVNQKMVARALEWLDVQPED-----RVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 N + KMV ++ ++ ++D +CG G F L ++ VG+E Sbjct: 213 NNPFMLPKMVDLVVDAATIKSSSGEAMTHLIDCYCGSGLFALGCSSSFDVCVGIEVNDKA 272 Query: 321 VEKGQQNARLNGLQNVTFYHENLEED-VTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIK 378 V++ + NA LNG++N F + E ++K P V++DP R G + ++Q+ + Sbjct: 273 VQEARANAELNGIKNCDFVSASAEAIFLSKDPVKGKESTVVVVDPPRKGCSEEFLEQLDE 332 Query: 379 LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +P R+VY+SC+PAT ARD++ L+ GY I + D+FP T H+E + +F R Sbjct: 333 YKPQRVVYMSCDPATQARDAKFLVAHGYDIVSVQPFDLFPQTRHIECLAIFER 385 >UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S2X4_FINM2 Length = 442 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 115/403 (28%), Positives = 167/403 (41%), Gaps = 36/403 (8%) Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS 117 KK + K+V +L SP CP CGGC Q D++ K L L K Sbjct: 46 KKGFIEGKLVEKLEKSPLETIEGCPVNERCGGCIYQKLEYDVECDLKKKTLTELYKDIYD 105 Query: 118 EVIADVP----WGYRRRARLSLNYLPKTQQLQMGFR-KAGSSDIVDVKQCPILAPQLEAL 172 E I P GYR + + K L +G K +I D C I+ + Sbjct: 106 EDIIFHPSPILQGYRNKMEYTFGDSVKGGPLVLGLHTKNKFYEITDTVDCNIIDEGFNKI 165 Query: 173 LPKVRACLGS-----LQAMRHLG---HVELVQATSGTLMILRHTAPLSSADREKLERFS- 223 V+ + ++H G H + ++ S ++ D F+ Sbjct: 166 RQAVQEYFRDKNYEFFKKIKHTGLLRHFIIRKSFSDDEYMINLVTTSDKFDVNDFVEFAK 225 Query: 224 ----------HSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQ 272 H+ ++ A + LE + G+ + NGL SP F Q N + Sbjct: 226 QIDNRIVSIYHTINDNISDAVIVDKLELLHGKEYLTEKINGLEFRISPFSFFQPNPAQAE 285 Query: 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG 332 ++ RALE V DL+CG G A ++ SV+GVE V VEK ++NA LNG Sbjct: 286 QIYTRALELAGDLSGKNVYDLYCGTGTIAQIFAKKSESVIGVEIVEEAVEKAKENAELNG 345 Query: 333 LQNVTFYHE---NLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVS 388 L N F + N E V K+ D V+LDP R G + ++I + P + +Y+S Sbjct: 346 LTNTEFICDDCLNFMEKVEKK-------DVVVLDPPRDGIHPKAIDRLIDINPDKFIYIS 398 Query: 389 CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 CNP T D + ++ GY I L D FP T H E++VL SR Sbjct: 399 CNPITQRMDLDKFIEKGYEIKSLEFFDQFPRTYHCEAVVLLSR 441 >UniRef50_B9XDW9 RNA methyltransferase, TrmA family n=1 Tax=bacterium Ellin514 RepID=B9XDW9_9BACT Length = 440 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 121/424 (28%), Positives = 189/424 (44%), Gaps = 78/424 (18%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 TV+ +D+ G+GVAR + +F+P ++ E AEV +TE KK++AR K+VR L SPER Sbjct: 68 TVTFHDIAFGGEGVARVDEFVVFVPFVMVGEEAEVEITEVKKRFARGKLVRVLKTSPERV 127 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS---EVIADV-----PWGYRR 129 P C +FG CGGCQ QH Q K + L + +V+ V P+GYR Sbjct: 128 KPLCQYFGDCGGCQYQHMDYAAQLLMKHKQICDLFERIGGIDPKVVGPVIPCPQPYGYRN 187 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R + + Q L +GF +A + +VD+++C I P + + Sbjct: 188 RIMIRSQWDKFKQGLNIGFIRADNRLVVDIEECKISEPAVN----------------EQI 231 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY 249 HV G + ++ AP EG ++ Sbjct: 232 QHVRKNPPPKGGIKVVLRVAP---------------EGWEV------------------- 257 Query: 250 DSNGLRLTFSPRD-FIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA 308 PRD F Q N + ++V A ++L ++D++CG+G F+L L Sbjct: 258 ----------PRDSFFQNNFFLLPELVGVARQFLKDSGSRFLVDVYCGVGFFSLELGDLV 307 Query: 309 ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD----KVLLDP 364 VGVE ++ ++NA L+N F EE + P F VL+DP Sbjct: 308 EGFVGVELDQLAIKAARRNAEKRNLKNGEFVTGRAEEML---PGLMQRFSPEATTVLIDP 364 Query: 365 ARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHTGH 422 R G ++++ P +++YVSC+PAT+ARD L G + + ++ DMFP T H Sbjct: 365 PRTGCLPESLELLRQTRPNQLIYVSCHPATMARDLNVLCAEGVFELVKVIPCDMFPQTAH 424 Query: 423 LESM 426 +E + Sbjct: 425 VECV 428 >UniRef50_Q9A8M7 Uncharacterized RNA methyltransferase CC_1326 n=5 Tax=Caulobacteraceae RepID=Y1326_CAUCR Length = 415 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 130/435 (29%), Positives = 196/435 (45%), Gaps = 45/435 (10%) Query: 19 VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 +++N + + G G+AR +GK F+P LP E V K AR +VV L+ SPER Sbjct: 4 LTINAIGAQGDGLARTADGKPAFVPLTLPGE-----VVRAKMDGARGEVVEILAPSPERV 58 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL---MKHDVSEVIAD--VPWGYRRRAR 132 P C H+GVCGGC QH + + R+ A RL M+ +E++ P RRR Sbjct: 59 APACRHYGVCGGCALQHWAAE-PYRAWKAEQVRLQLSMEGLETEILPTFAAPPASRRRVA 117 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQL-----------EALL--PKVRAC 179 L K Q ++GF++ S ++V +++CP+ P+L E L PK Sbjct: 118 LHARKGGKGQGARLGFKERRSWNLVSIEECPVTDPRLVAALPALARLAEPFLEHPKSAPT 177 Query: 180 LG-SLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI 238 L +L A + V+ SG L +A R + + Sbjct: 178 LHVTLTATGLDIDITGVERKSGGLSADARMRAAMAAGEGDFARVTLAG------------ 225 Query: 239 LETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 ET+ G P + P F+Q + MV A+ + Q RV DL+CG+ Sbjct: 226 -ETIYGARQPLVKLGQAVVALPPGSFLQAVPAAEKAMVELAVA--EAQGASRVADLYCGV 282 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL-EEDVTKQPWAKNG 356 G FT PLA A PA+ GL+ +T +L V AK Sbjct: 283 GTFTFPLAEVAQVYAAEMSAPAITALKAAIGGAPGLKPITAEARDLVRRPVLSTELAKT- 341 Query: 357 FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 D V++DP RAGAA +I K + +++ VSCNP T A+D+ L+ AG+ + R+ +D Sbjct: 342 -DVVVIDPPRAGAAEQTVEIAKSKVAKVLGVSCNPQTFAKDARVLVDAGFKLVRVTPVDQ 400 Query: 417 FPHTGHLESMVLFSR 431 F + H+E + +F+R Sbjct: 401 FVWSPHIELVGVFTR 415 >UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDB5_9FIRM Length = 431 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 110/444 (24%), Positives = 208/444 (46%), Gaps = 41/444 (9%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + I ++D D GV + + +F+P LL E A++ + + K+YA ++ L Sbjct: 4 NEEYIVTCIDDTD-LNSGVVKIDDMVVFVPNLLIGEKAKIKIVKVNKKYAFGIIIELLKP 62 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-DVSEVIA-DVPWGYRRR 130 S R+ C CGGCQ QH S Q K + +L + +V ++ D PW YR + Sbjct: 63 SINRQELTCEVAKTCGGCQLQHMSYAYQLDYKYKHVKKLFEGIEVKPILGMDNPWYYRNK 122 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 A+ + K ++QMGF + S+D+V K+C I + + ++ + +L+ + L Sbjct: 123 AQFPVKI--KDGKVQMGFYRQHSNDVVTCKECKIQDHVINEVFSFIQKKI-TLKMAQDLR 179 Query: 191 HVELVQATSGTLMIL---RHTAPLSSADREKLERFSHSEGL--------------DLY-- 231 HV + +++ + ++ ++ + S + F++ + D Y Sbjct: 180 HVFIRHSSTDEIQVVFIGKNEKNIISLSDQLKNTFANITSIVFNYNTRNDNVILGDTYKV 239 Query: 232 LAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 L + I+E G N ++L F + F QVN + + ++A++ ++ + + Sbjct: 240 LYGNDYIIEECLG-------NKVKLHF--KAFFQVNPKQMEVLYSQAIKAANLTGNETCI 290 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-- 349 D++ G G + ++ A SV+GVE V V+ N ++N L + + + +D T Sbjct: 291 DMYAGTGTIGMAVSQHAKSVIGVEIVKEAVDNANDNTKMNHLDHCHY----VCQDATDFA 346 Query: 350 QPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 ++ D + +DP R G ++ I ++P +IVYVSCNP TL+RD + + GY Sbjct: 347 HDHKEDKIDVIFIDPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQC 406 Query: 409 ARLAMLDMFPHTGHLESMVLFSRV 432 + +DMF T LE + +++ Sbjct: 407 EYVQPVDMFCQTIGLECVAKLTKI 430 >UniRef50_A3UJK5 Possible hypothetical RNA methyltransferase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UJK5_9RHOB Length = 423 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 131/435 (30%), Positives = 203/435 (46%), Gaps = 26/435 (5%) Query: 8 KRRTTTRQIITVSVNDLDSFG-QGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKV 66 +RR + + V DS G +G A G +F PGLLP E A+V V Q R +V Sbjct: 3 RRRKAAPKPVHVETLIADSLGARGDAVMAG-PVFTPGLLPGEGAKVEV-----QGQRGRV 56 Query: 67 VRRLSDSPERETPRCPHFGVCGGCQQQH---ASVDLQQRSKSA-ALARLMKHDVSEVIAD 122 + R+S SP+R P CP CGGC QH ++ L +R AL + H ++ D Sbjct: 57 LERVSTSPDRVEPFCPVAERCGGCSLQHFEESAYRLWKRHLVVDALEKAGVHAEVRMLVD 116 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 RRR ++L+ +L +GF + IVD+ CP+ P L A +P +R Sbjct: 117 AHGEGRRR--MTLHAQRFGAKLVVGFAERAGDKIVDITDCPVSTPGLRASVPGLRKLAEV 174 Query: 183 LQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETV 242 + + ++ G + ++ +S A RE + ++E Sbjct: 175 ATPKKGRIDIHVLDCEPGLDVSIQGVKEISLALREAGAELAGKYNWTRVTIGGDPLIEF- 233 Query: 243 SGEMPWYDSNGLRLTFSPRDFIQVNA---GVNQKMVARALEWLDVQPEDRVLDLFCGMGN 299 E P ++T +P F+Q A + V A++ L+ + + DLF G G Sbjct: 234 --EAPVVKFGDTKVTPAPGGFLQATAEGEAILAGFVDEAVKSLEGKGPFKAADLFAGAGA 291 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNA-RLNGLQNVTFYHENLE-EDVTKQPWAKNGF 357 F L LA + V+ VEG L+ Q+ A R GL+ V +L E +T P G+ Sbjct: 292 FALRLA-RTMPVLAVEGESGLLHALQRAAQRTPGLKPVDARVRDLALEPIT--PKELEGY 348 Query: 358 DKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 V++DP RAGA +++ + P+ IV +SCNPAT ARD+ L++ GY + + +D Sbjct: 349 SLVVIDPPRAGAKAQAERLSDSMVPV-IVSISCNPATFARDAAILIEGGYRMGPVTPVDQ 407 Query: 417 FPHTGHLESMVLFSR 431 F TGH+ES+ +F R Sbjct: 408 FKWTGHVESVAVFRR 422 >UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFJ7_ACHLI Length = 451 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 122/456 (26%), Positives = 200/456 (43%), Gaps = 43/456 (9%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 +++ I+ + V + G+G+ + +FI LP E +TE A AKV+ Sbjct: 2 QQKIRLNDILEIDVKRMGINGEGIGYYERLAIFIDNALPGEKVLAQITEVFPNRATAKVL 61 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVD--LQQRSK--SAALARLMK----HDVSEV 119 + L SP R P CP + CGGCQ QH + L Q+ AL R +K H +S+ Sbjct: 62 QTLEKSPNRVKPLCPVYDACGGCQVQHFDYNAMLNQKKDIIKKALDRYVKRYDAHIISDT 121 Query: 120 IA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 I D P YR +A L L + + M R + + V + C + ++ + Sbjct: 122 IGMDNPKNYRNKASLPLRLIDNKNRFGMFARNSNA--FVPINTCGVQHTKINDIF----T 175 Query: 179 CLGSLQAMRHLGHVE-LVQATSGTLMILRHTAPLS--------SADREKLERFSHS---- 225 + SL H+ + ++Q + I+R T L+ S + L+ H Sbjct: 176 TMTSLMDRYHIDAYDPVLQTGIISHAIVRITENLNEVQVTFILSKAFDGLDNLVHELVKL 235 Query: 226 --EGLDLY--LAPD------SEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKM 274 E + +Y + PD +E + + G EM G + SP F Q+N K Sbjct: 236 HPEIMSIYKVINPDVRQSYFTEDIHLIYGKEMIEEQLGGHTFSLSPDAFFQLNTSQADKF 295 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 ++P + V+D + G+ + + A + +E V+ + + N + Sbjct: 296 YNEMKRLAQIKPTEIVVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHID 355 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPAT 393 NVT N E+ + K D +L DP R+G V+Q I+K +P R+VY SCNP+T Sbjct: 356 NVTVIENNFEDALDNLKDIK--IDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPST 413 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 LA+D LL+ Y + + +DMFP+T +ES+ L Sbjct: 414 LAKDLSLLLE-DYDLKHITPIDMFPYTSLVESITLL 448 >UniRef50_C8QZ82 RNA methyltransferase, TrmA family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ82_9DELT Length = 450 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 127/453 (28%), Positives = 202/453 (44%), Gaps = 48/453 (10%) Query: 17 ITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 + +++ + + G G+ R +G T+ +PG+LPQE V V +++ A++ +P+ Sbjct: 1 MLLTIEKIVAGGLGLGRRQDGCTVMVPGVLPQEEVLVRVRRRHRRFLTAELQEVRRAAPQ 60 Query: 76 RETPRCPHFGVCGGCQQQHASVD---------LQQRSKSAALA-RLMKHDVSEVIADVPW 125 R CP + CGGC QHA LQ+ + A LA +++ + A + Sbjct: 61 RRRAPCPCYEACGGCDLQHAVYSAQLTFKQQILQELLQRAGLAEKVLPRLAPPLTAPSEF 120 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA--CLGSL 183 YR+R R+ + +Q Q GF + GS + V C + P++ AL +++ L Sbjct: 121 HYRQRIRM------QVEQGQAGFFQTGSHRLQPVNSCLLARPEINALWQELQPHEAWQQL 174 Query: 184 QAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVS 243 A + L A+ +++L H A+R + H DL L Sbjct: 175 AAQVSALEINLDPASRRLVLLLHHRRRPRPAERRAALQLCH----DLPALKGLAFLPVGH 230 Query: 244 GEMPWYDSNG-------------------------LRLTFSPRDFIQVNAGVNQKMVARA 278 P+ D + L L F P F QVN N++++ Sbjct: 231 AAGPFIDRDSGPAGRLGSEALQLCLKLPVTPAGRTLELQFEPWGFSQVNEEQNRQLLTLL 290 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 +E L + V DL CGMGNF+LPLA V GV+ A + ++NA N L N F Sbjct: 291 IELLQPAGHEIVADLHCGMGNFSLPLALLVGEVHGVDLQAAAIRGAKRNAEANRLNNCHF 350 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDS 398 + + A D +LLDP RAG ++ + P ++V +SC+PAT+ RD Sbjct: 351 RQAEAHQGLAALQAAGIRPDVLLLDPPRAGCRELVATLEAPLPGKVVMISCDPATMTRDL 410 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 ALL Y + + ++DMFP T HLE++ L SR Sbjct: 411 AALLALNYQVETMRLVDMFPQTHHLETITLLSR 443 >UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8N4_9FIRM Length = 457 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 113/431 (26%), Positives = 200/431 (46%), Gaps = 38/431 (8%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+G+A H GK +FI +P+E E + D+ Y ++ R + S +R P CP + C Sbjct: 12 GEGIAFHEGKPVFIENAIPEEVIEFDIKSDENTYLIGEMTRLVEQSSKRRYPLCPIWKEC 71 Query: 88 GGCQQQHASVDLQQRSKSAALAR-LMKH-DVSEVIADV-----PWGYRRRARLSLNYLPK 140 GGC H Q + K L L+K+ D + I + P YR +L + Sbjct: 72 GGCALMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLSYRNSCKLPFG--EE 129 Query: 141 TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSG 200 +L G + ++ +++C + + LL + R + + HL + + T Sbjct: 130 YGELYTGMYERDTNHFQKMERCYVHS----KLLEQTRQAVLKIMNEHHLKMYDDKKKTGY 185 Query: 201 TLMILRH----TAPLSSADREKL-ERFSHS----EG-LDLYLAPDSEILETVSGEMP--W 248 ++++ + +E L E F H EG + ++ + +E V G+M W Sbjct: 186 RTLVMKEFDSKIQIIFVTGKENLSEEFIHDVTQLEGVVSIWQSVKTETKREVFGDMRFIW 245 Query: 249 YDSN------GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR-VLDLFCGMGNFT 301 + ++L+ PR F Q+N + + +W+ P + ++ + G+G + Sbjct: 246 GEEKMHLQLEDIQLSLLPRSFFQLNTKQSVNLYNVVKDWM---PRSKTTVEAYSGIGAIS 302 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 L + +A ++GVE + V+ +NA LN NV+F E+ + K+ D ++ Sbjct: 303 LFVKDKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHLVQEKD-VDTLI 361 Query: 362 LDPARAGAAGVMQQIIKLEPIR-IVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 +DP R+G M++ I I+ ++YVSCNPATLA+D +LK Y I ++ +DMF T Sbjct: 362 VDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDL-GVLKKEYRIVKIQPVDMFSQT 420 Query: 421 GHLESMVLFSR 431 H+ES+ L R Sbjct: 421 PHVESVTLLVR 431 >UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1727 n=19 Tax=Bacillales RepID=Y1727_LISMF Length = 459 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 116/444 (26%), Positives = 200/444 (45%), Gaps = 54/444 (12%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+G+ +F+PG + E V + + ++ AK+ + SP R T CP + C Sbjct: 23 GEGIGYFKKAVVFVPGAITGEEVVVEAVKVRDRFTEAKLNKIRKKSPNRVTAPCPVYEAC 82 Query: 88 GGCQQQHASVDLQ-QRSKSAALARLMKHDVSE---------VIADVPWGYRRRARLSLNY 137 GGCQ QH + Q + + + + KH + + + PW YR +++ Sbjct: 83 GGCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRM 142 Query: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL------------GS--- 182 + + Q++ G A S +V ++ C + P + VR L GS Sbjct: 143 V-GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIV 201 Query: 183 ----LQAMRHLGHVELVQATSGT--------LMILRHTAPLSSADREKLERFSHS--EGL 228 ++ G +LV T+ L + P ++ + + + S G Sbjct: 202 RTIVVRTGVKTGETQLVFITNSKKLPKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGD 261 Query: 229 DLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + +L E +E E L S R F Q+N +++ + L + + Sbjct: 262 ETFLLAGKESIEEKLME--------LEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSE 313 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 ++D +CG+G A + V G++ +P +E ++NA NG++NV +Y EDV Sbjct: 314 TLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV-YYEVGKAEDVL 372 Query: 349 KQPWAKNGF--DKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG 405 + W GF D V++DP R+G G+++ ++ +E ++VYVSCNP+TLARD ALL Sbjct: 373 PK-WVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL-ALLAKK 430 Query: 406 YTIARLAMLDMFPHTGHLESMVLF 429 Y I + +DMFP T H+E++VL Sbjct: 431 YRIRYMQPVDMFPQTAHVETVVLL 454 >UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXJ3_9BACL Length = 446 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 116/433 (26%), Positives = 200/433 (46%), Gaps = 33/433 (7%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G GV + + +FI ++ E E + + KK KV+ + S R P Sbjct: 18 GLGVVKIDNFPIFIEDVIEGEVIEFKIIKLKKNLGYGKVLNIIESSKNR-VDGIPK---T 73 Query: 88 GGCQQQHASVDLQQRSKSAALARLMKH----DVSEVIADVPW--GYRRRARLSLNYLPKT 141 G H + + Q + K + +M D EV+ + GY R + + Sbjct: 74 SGANLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGMEDGYHYRNKSVIPVQKVN 133 Query: 142 QQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ-----AMRHLGHVELVQ 196 +++MG+ K S D+V++++C I + L+ K+R+ + L H G + + Sbjct: 134 GEVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENSHSGAIRHIM 193 Query: 197 ATSGTLMILRHTAPLSSADREKLERFSH----------SEGLDLYLAPDSEIL----ETV 242 + TL ++ KL+ F S L++ + I E + Sbjct: 194 FRTNTLKSEIMVGIVAKEKFNKLDEFVEKISKLDDRIVSIMLNINDKKTNVIFGDKTENL 253 Query: 243 SGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 G+ D+ +G+ S R F QVN + + ++ALE +++ D ++D +CG+G + Sbjct: 254 FGKDYITDTLDGIDFKISLRSFYQVNPVQTEVLYSKALELAELKETDTIIDAYCGIGTIS 313 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN-GFDKV 360 L A + V G+E V A V +NA+ N + NV F EDV K+ +++ D V Sbjct: 314 LFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGK-SEDVIKKLISQDVKLDAV 372 Query: 361 LLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 ++DP R G ++ + ++ +IVYVSCNPATLARD E + GY + + +DMFP Sbjct: 373 IVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIMRGLGYKLGSVQPVDMFPG 432 Query: 420 TGHLESMVLFSRV 432 T H+E++VL S++ Sbjct: 433 TYHVETVVLLSKL 445 >UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWS7_9BACL Length = 451 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 117/456 (25%), Positives = 209/456 (45%), Gaps = 39/456 (8%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 K + R + +++ + G+G+ + K F+ G LP E + E+ +Y K+V Sbjct: 2 KNKNGKRLNVLLTIKKIGINGEGIGYYKKKITFVKGALPDEVIVCEIVEETPKYIIGKLV 61 Query: 68 RRLSDSPER-ETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-------ARLMKHD---V 116 + SP R E R + G H S + Q K L RL K D + Sbjct: 62 KVKEPSPHRVEIKR--EYAESGAYGLAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVL 119 Query: 117 SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKV 176 + + V GYR + + L + ++ G K GS+D+V++ + L + Sbjct: 120 KTLASPVTEGYRNKNQFPL--AVRNGRVIAGLYKEGSNDLVEINEDLALHENGNKITNLA 177 Query: 177 RACLGSLQA-----MRHLGHVELVQATS---GTLMI--LRHTAPLSSADR--EKLERFSH 224 + LG + ++ G + TS G + + + +T + + D+ +L+R Sbjct: 178 KKLLGKYKVEISTNKKNYGVKYIATRTSFYNGDVQVTFVANTDKIKNMDKVVNELKRERI 237 Query: 225 SEGLDLYLAPDSEILETVSGEMPWYDSNGL-------RLTFSPRDFIQVNAGVNQKMVAR 277 + + L + D + L + + Y S+ + + S + F Q+N +K+ + Sbjct: 238 VKSIILNITNDKDHLVMGTESVTLYGSDYIVEKIGDTKYELSAKSFFQLNPPATKKLYDK 297 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 +E+ ++ D VLD +CG+G ++ V GV+ +PA +E N +LN L+N T Sbjct: 298 VVEFAALKETDVVLDAYCGVGTIGQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCT 357 Query: 338 FYHENLEEDVTKQPWAKNG--FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLA 395 + + + V + W K G FD ++DP R G + + ++ +E +IVYVSCNP+TLA Sbjct: 358 YVAGDANKIVPR--WKKKGINFDVAIVDPPRVGLGPLAKNLLAVEAKKIVYVSCNPSTLA 415 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 RD + L + Y I R+ +DMFP T +E++V R Sbjct: 416 RDLKVLTRK-YKIRRIQPVDMFPGTAAVEAVVELIR 450 >UniRef50_A6G9S9 RNA methyltransferase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G9S9_9DELT Length = 482 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 136/451 (30%), Positives = 199/451 (44%), Gaps = 44/451 (9%) Query: 17 ITVSVNDLDSFGQGVARHNGKT-----------LFIPGLLPQENAEVTVTEDKKQYARAK 65 +TV ++DL G GV R +T F+ G LP E + V + K++ R Sbjct: 12 LTVRIHDLAHGGAGVGRPESETGTPEGEAETRVCFVDGALPGERVRMRVDTENKRWLRGH 71 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIA 121 V L +PER C CGGC QH Q + K+ L RL + + Sbjct: 72 CVEVLEAAPERSEAPCALADRCGGCGWQHVEASAQAKLKAKIVEGQLRRLPVVVAESLPS 131 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 P GYRRRAR ++Y L++GF S IVD CP+L P L+ + +VRA Sbjct: 132 PSPLGYRRRAR--VHYRKTAAGLELGFYGQRSHAIVDCATCPVLDPALDWAVQQVRAW-- 187 Query: 182 SLQAMRHLGHVELVQATSGTLMIL-----RHTAPLSSA---------DREKLERFSHSEG 227 Q + G E+V ++G+ ++L RH L +A D E E Sbjct: 188 -AQWLPERG--EVVGLSNGSEVVLGLPGVRHDPELEAAIRAVLGEPKDGEDSEESKEPVL 244 Query: 228 LDLYLAPDSEILETVSGEMPWYDSNGLRLTFS--PRDFIQVNAGVNQKMVARALEWLDVQ 285 L + L E + + D +G S P F Q A N+ +V + Sbjct: 245 LGVQLRGGRERVGVGRTHLE-LDGDGPTPPVSQGPFTFSQAQAAQNRNLVEHVAARVRES 303 Query: 286 PED-RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 D RVL+L G+GNF+ LA A +V V+G + Q+ A GL+ + E Sbjct: 304 GRDARVLELHAGVGNFSRVLARSAKAVWAVDGDREAIANLQRTAERWGLR-INAKRGQAE 362 Query: 345 EDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 + K + +D V+LDP R+G + ++ + R+VYVSC+PATLARD LL Sbjct: 363 RLLAKLATSGRRYDVVVLDPPRSGIGEAAARDLLSVVRDRVVYVSCDPATLARDLAVLLA 422 Query: 404 --AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 +G +A L + DM P T +E + +RV Sbjct: 423 EGSGLELADLRVFDMMPMTPEVEVVATLNRV 453 >UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavobacteriales RepID=A4C0T4_9FLAO Length = 485 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 115/187 (61%), Gaps = 7/187 (3%) Query: 253 GLRLTFSPRDFIQVNAGVNQKMVARALEWL--DVQPEDR--VLDLFCGMGNFTLPLATQA 308 GL S + F Q N +K+ + +E++ D D V+DLFCG G +A+++ Sbjct: 298 GLDFEISMKSFFQTNPKCAEKLYNKVVEYVLEDKTKVDNTVVMDLFCGTGTIGQIVASKS 357 Query: 309 --ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 366 A ++GV+ V + +E ++NA+ N + V F+ ++ + +T P +N ++LDPAR Sbjct: 358 KNAQIIGVDIVASAIEDAEKNAKRNNITGVQFFAADVGKFLTSHPEYENKIKTIILDPAR 417 Query: 367 AGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES 425 AG A +Q+II L R+VYVSCNPAT ARD+E L AGY I +++++D FPHT H+E+ Sbjct: 418 AGIAPKTLQKIINLNADRMVYVSCNPATQARDTELLGAAGYVIKKMSLVDQFPHTAHIET 477 Query: 426 MVLFSRV 432 +VLF +V Sbjct: 478 VVLFEKV 484 >UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37219 Length = 416 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 116/419 (27%), Positives = 187/419 (44%), Gaps = 51/419 (12%) Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHD 115 +YA V + ++ S +R P CP + +CGGC H S + + R KS A AR+ Sbjct: 3 RYAYGIVEKLITPSRDRIEPVCPKYKICGGCVFMHMSYEAECRIKSNIVTEAFARIGHLV 62 Query: 116 VSEVI----ADVPWGYRRRARL---SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQ 168 E++ +D GYR +A+ Y T + GF S +V V C + Sbjct: 63 PKEILPIFSSDSIEGYRNKAQYPYADYKYTDNTVFPKFGFYAPRSHRLVPVTYCVLQPAA 122 Query: 169 LEALLPKVRACLGS--LQAMRH---------LGHVELVQAT-SGTLMILRHTAPLSSADR 216 +L LG+ A+ L H+ + Q S +M+ TA ++ R Sbjct: 123 FGDILRHCEEELGTADFNAITPYNEESGNGVLRHLYIRQGFHSKEIMVCFVTAKDNNHIR 182 Query: 217 EKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSN---------------------GLR 255 ++L ++ L D+ +++V + +N G+ Sbjct: 183 KQLTDLGNT------LIADTHEIKSVMLNVNPQKTNVILGKKTVCLIGKDTIADTLCGVP 236 Query: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 ++ SP+ F QVN +K+ A A + ++ +LDL+CG G L +A V+GVE Sbjct: 237 VSLSPQSFYQVNTAQAEKLFAEAKRLAAPKKDELLLDLYCGAGAIGLSMADTVGKVIGVE 296 Query: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGV-MQ 374 VP +E + NA+ G+ N F+ + E K D ++LDP R G + + Sbjct: 297 VVPQAIEDAKANAKRAGISNAEFFAGDAGEIAAKFAAEGRKPDIIVLDPPRKGCDTLTLD 356 Query: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 +++ P RIV +SCNP+T ARD+ L + G+T+ L D FP T H+E +VL SR K Sbjct: 357 ACLEMAPSRIVMISCNPSTAARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSRQK 415 >UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XV5_DESDG Length = 457 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 127/460 (27%), Positives = 199/460 (43%), Gaps = 61/460 (13%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I+ + + L + G+ +ARH +FI LP + VT +K YA A ++ + + Sbjct: 12 ILHLQPHTLTTGGRALARHGRLAVFIDNALPGQTVTARVTRCRKNYAEATLLGVTAAADY 71 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQ----QRSKSAALARLMKHDVSEVIADVPWGYRRRA 131 + P C HF CGGC QH +Q QR A R+ + V+ + +R Sbjct: 72 QTEPFCRHFAECGGCSWQHMPYAMQLEWKQRLVHDAFVRIGRIAEPPVLPALASPAQRFF 131 Query: 132 RLSLNYLPKT---QQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR--ACLGSLQA- 185 R + + + Q +++G R GS D++++ +C + + + ++ VR A L A Sbjct: 132 RNKMEFAFENDSPQGIRLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQTGLTAW 191 Query: 186 --------MRHLGHVE-------LVQATSG--------TLMILRHTAPLSSADREKLERF 222 R+L E +VQ +G +R L + E + F Sbjct: 192 DVRSGEGFFRYLVIRETLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESGEGITSF 251 Query: 223 SHSEGLD----------LYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQ 272 H E LY DS + E + NG T +P F Q N + Sbjct: 252 IHGERRSPVQAAYAEKTLYSTGDSHLTEQL---------NGRTFTMAPHAFFQTNTAATE 302 Query: 273 KMVARALEWLDVQPEDRVL-DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN 331 + A D + VL DL+CG+G L +A Q SV G+E V+ NAR Sbjct: 303 ILSRTAA---DYAGQGGVLWDLYCGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQ 359 Query: 332 GLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCN 390 + F ++ + + K D V+ DP RAG V+ +I P +IVY+SC+ Sbjct: 360 QVPQARFLAGDVRRLLIRH---KEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCD 416 Query: 391 PATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 PAT ARD+ AL + Y + + +DMFPH+ H+ES+ LFS Sbjct: 417 PATQARDAAALTDS-YRLEAVQPVDMFPHSAHIESVALFS 455 >UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDX8_9FIRM Length = 394 Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 114/387 (29%), Positives = 182/387 (47%), Gaps = 38/387 (9%) Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-HDVSEVI--ADVPWGYRRRARLSLN 136 RCP+ CGGC Q Q + K +A L+K + E I + P+ YR +A L Sbjct: 10 RCPYEKWCGGCSMQGLPYKEQLKRKEKEVADLLKAYGRPEPILGMNFPYYYRNKAHAVLG 69 Query: 137 YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ-----------A 185 K + + G + GS IV++ +C I + + L+ VR L S + Sbjct: 70 GSLKGK-IVCGTYERGSHRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDTGRGC 128 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLE---RFSHSEGLDLYLAPDSEILETV 242 +RH+ + A G +M++ TA + R+K R +H + + + V Sbjct: 129 LRHI--IARRTADGGQIMLILVTAQAAFPSRKKFVSALRKAHPNITTILQNINGQSTSVV 186 Query: 243 SGEM------PWYDSN---GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 G+ P Y + G R SP F QVN+ +K+ A++ D++ ++RVLD Sbjct: 187 LGDRYEVLYGPGYIEDRLMGARFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKERVLDT 246 Query: 294 FCGMGNFTLPLATQAA-------SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 +CG G + A A ++GVE PA V + NAR+NGL+ F + Sbjct: 247 YCGTGTIGIAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADAGAF 306 Query: 347 VTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG 405 + + A D V +DP RAG+ + + +L P +IVY+SC+P T ARD + L + Sbjct: 307 MLAEAEAGRSCDLVFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQARDLK-YLDSA 365 Query: 406 YTIARLAMLDMFPHTGHLESMVLFSRV 432 Y I R+A +DMFP T +E++VL ++ Sbjct: 366 YAIRRIAPVDMFPFTDGIENVVLLEKI 392 >UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8REE9_9FIRM Length = 451 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 105/448 (23%), Positives = 206/448 (45%), Gaps = 32/448 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 +Q++T ++ +D G G+ ++ + + G LPQE V + + +Q ++ + S Sbjct: 5 KQVVTGTIAHIDEMGNGIIKYREDMILVRGALPQEEVRVEIVKRLQQGYVGNILEIIKPS 64 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD-----VSEVI-ADVPWGY 127 R P+C + CG CQ H Q + K + L K V +V+ A P+ Y Sbjct: 65 EYRCKPKCSIYAKCGSCQLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVLCAGNPYHY 124 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA-- 185 R + + + ++++ GF + S I+ + C + + + ++ + + + L Sbjct: 125 RNKMIIGFQK-GRDKRIKAGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLAIEI 183 Query: 186 ---------MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERF--SHSEGLDLYLAP 234 +RH+ + + T +++ ++ + A R+ +E +H + Sbjct: 184 YDEDRRTGLLRHV-LIRYGKVTKQIMVVFVVSSNVFPARRKLVEELLKAHPNITTIVQNV 242 Query: 235 DSEILETVSG--EMPWYDSN-------GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 + V G E Y GLR S + F Q+N + + +AL+ L + Sbjct: 243 NPRKTSIVLGNEERILYGKGYIEDILCGLRFKISCKSFYQINHDQCEVLYTKALDKLMLT 302 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 + VLD +CG+G + +A++ V+GVE V+ QNA+LN ++N+ F ++ Sbjct: 303 GNEVVLDAYCGIGTIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGS 362 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 +++ A+ D +++DP R+G++ + +L +I+Y+SCNP T RD L K Sbjct: 363 FMSQLAKAQQTLDVLIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQKL 422 Query: 405 GYTI-ARLAMLDMFPHTGHLESMVLFSR 431 GY + + ++DMFP T +ES+ + R Sbjct: 423 GYRVEGSMTLVDMFPFTNSIESVCMLVR 450 >UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=Lactobacillales RepID=B1MWX6_LEUCK Length = 498 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 121/457 (26%), Positives = 207/457 (45%), Gaps = 51/457 (11%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 Q +++ L G+G+ K +F+PG+LP E A V VT+ + +Y AKV++ SP Sbjct: 51 QNFPLTIKRLGINGEGIGYFKRKIVFVPGVLPDEVAVVKVTDVQPKYIAAKVLKIREKSP 110 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---------HDVSEVIADV-P 124 R P GG + +H + Q K +A+ ++ +D+ + I P Sbjct: 111 NRVKPLDTFADEVGGFELEHMTYSAQLAFKKDVIAQSLEKFQPKGWSDYDLRDTIGMANP 170 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 + YR +A+ + + L +G K GS ++VD+ +P +L VR L L Sbjct: 171 YEYRNKAQFPVRKIDDV--LSVGMYKRGSHELVDLPIVHTQSPATMKVLRTVRDLLDKLS 228 Query: 185 AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL--DLYL-APDSEILET 241 + GT+ + ++ D + L ++++G D+ L A ++ L Sbjct: 229 V-----SIYNEDKNRGTVKTIVARVSHTTGDVQ-LTFVTNTDGFPGDVALIAAINQALPE 282 Query: 242 VSG----------EMPWYDSN--------------GLRLTFSPRDFIQVNAGVNQKMVAR 277 V+G + W + G SPR F+Q+N + Sbjct: 283 VNGIFQNFNPGRTSLVWGEETIKLWGKDYIEETVMGKTFQLSPRAFMQLNHTQMTVVYNE 342 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 AL L++ D+++D + G+G L LA +A V G+E +P V+ NA++N + N Sbjct: 343 ALSALNLTHADKLVDAYAGVGTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAK 402 Query: 338 FYHENLEEDVTKQPWAKNGF--DKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATL 394 + E +V W G+ D +++DP R G + ++II+ +P + VY+SCN +TL Sbjct: 403 Y--EVGTAEVLFPKWQAEGWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTL 460 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 ARD L KA Y + + +DMFP T E +V +R Sbjct: 461 ARDLVDLTKA-YKVDYIQSIDMFPQTARWEGVVKLTR 496 >UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4RQV8_OSTLU Length = 536 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 136/479 (28%), Positives = 207/479 (43%), Gaps = 65/479 (13%) Query: 17 ITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 ++V D + G+GV + NG L G P E VT+ +K+ A +P Sbjct: 57 VSVECVDFATSGEGVCKLANGMVLLCDGATPGEVVRARVTKLRKKLAHGAKTATERAAPN 116 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQ---QRSKSA-ALARLMK--HDVSE-----VIADVP 124 T CPH CGGC QH + D Q +R++ LAR+ K D V AD Sbjct: 117 AVTAPCPHHEQCGGCAWQHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGACVGADET 176 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSD-IVDVKQ-CPILAPQLEALLPKVRACL-- 180 YR + + + + + +G R G++D +VD+ C + + + + +L +R L Sbjct: 177 SRYRNKMEFAFASGTRGKTV-VGLRPRGANDSVVDLSGGCLLQSEEADRVLAAIRETLER 235 Query: 181 --GSLQAM-RHLGHVELVQAT--------SGTLMILRHTAPLSSADREKLERFS------ 223 G L+A R G L T G ++ A +S + K + Sbjct: 236 ADGRLEAFDRTSGEGTLRSVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLAGLIDVV 295 Query: 224 ----------HSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQ 272 H+ G A ++ +E V GE ++ NG+ S F Q N Sbjct: 296 SKVPGVVSVVHTSGGTTTKAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQTNTEQAA 355 Query: 273 KMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 ++V + E + + VLDLFCG+G L +A+ + V+G E VP V+ ++NA L Sbjct: 356 RLVRQVREACAFSGDKSEIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAEL 415 Query: 331 NGLQNVTFYHENLE--------EDVTKQPWAKN--GFDKVLLDPARAGAAGVMQQIIK-L 379 N + N FY +L + + P K D V+ DPAR G + I++ + Sbjct: 416 NNITNAKFYRVDLARLNPSKGPKGLLTTPKGKELPMPDIVITDPARPGMDSALIAILRTI 475 Query: 380 EPIRIVYVSCNPATLARD-------SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 RIVYVSCNPAT ARD SE Y + + +DMFPHT H+ES+ + R Sbjct: 476 GARRIVYVSCNPATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLER 534 >UniRef50_C5SKB7 (Uracil-5)-methyltransferase n=3 Tax=Caulobacteraceae RepID=C5SKB7_9CAUL Length = 419 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 124/432 (28%), Positives = 197/432 (45%), Gaps = 33/432 (7%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 +T+++ + G GV +F+P LP E TV + A+++ ++ S +R Sbjct: 4 VTLTIEKVGFQGDGV---TADGVFVPLTLPGE----TVRASPPKEGHARLIGVVTPSAQR 56 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV----IADVPWGYRRRAR 132 P CPHF CGGC QH + + K A + +++ E I P RRR Sbjct: 57 VAPVCPHFSQCGGCSLQHWEMSVYSDWKRANVETVLRRAGLETEIAPILTTPPATRRRVG 116 Query: 133 LSLNYLPK--TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 L + T + ++G+++ S D V ++ CPI P L A +P + L H Sbjct: 117 LHAKQYRQGNTVRTELGYKRRRSWDQVKIEVCPIADPALIAAIPTLTEIAAHL--FEHPK 174 Query: 191 HVELVQAT---SGTLMILR-----HTAPLSSADREKLERFSHSEGLDLY-LAPDSEILET 241 ++ T +G + +R + LS+ R ++ + S + L ++ +IL Sbjct: 175 SAPILSVTVSDTGLDVDVRGIERSKSGGLSAQARMEIALIAQSSDIRLARISMADDIL-- 232 Query: 242 VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 +P + F+Q + MVA + V RV DLFCG G FT Sbjct: 233 YQSHLPSVRFGRATVDLPAGSFLQASPHSEADMVALVKD--AVAGTKRVADLFCGAGTFT 290 Query: 302 LPLATQAASVVGVEGVPALVEKGQQN-ARLNGLQNVTFYHENL-EEDVTKQPWAKNGFDK 359 PLA + ASV +G V + R GL+ +T +L V + A G+D Sbjct: 291 FPLA-ETASVYAADGAGGAVRALKAAIGRAPGLKPITVEARDLFRAPVVAEEMA--GWDA 347 Query: 360 VLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 V+ DP RAGA QQI + + R+V VSCN T ARD++ L +AG+ + R+ +D F Sbjct: 348 VVFDPPRAGAEAQAQQIARSQVARVVGVSCNIQTFARDAKILTEAGFQLDRVTPIDQFLW 407 Query: 420 TGHLESMVLFSR 431 +GH+E + +FSR Sbjct: 408 SGHVELVGVFSR 419 >UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6 Tax=Thermococcaceae RepID=Y1172_PYRFU Length = 411 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 110/405 (27%), Positives = 187/405 (46%), Gaps = 41/405 (10%) Query: 39 LFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVD 98 + +P P + EV TE +K+ A R L SP R RC FG CGGC QH + + Sbjct: 20 ILVPFSAPGDEVEVLKTEKQKRAKIATEWRLLRSSPIRVGARCKVFGKCGGCILQHINYN 79 Query: 99 LQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIV 157 Q K L +++ +V + + +G+R R L++ +GFR+ G +V Sbjct: 80 SQLEFKKEKLRKILGREVEIIPSPRIFGHRNRIDLAVTVNA------IGFREKGKWWSVV 133 Query: 158 DVKQCPILAPQLEALLPKVRACLG----SLQAMRH----LGHVELVQAT-SGTLMILRHT 208 DV++CP+ + + ++R + S +R L ++ L + +G +M+ T Sbjct: 134 DVEECPVFGKTSKKAIERLREYIEEEKVSTWKIREDSGFLRYMVLREGKFTGEIMVNFVT 193 Query: 209 APLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY--------DSNGLRLTFSP 260 D F+ S +Y + + + G++ Y + +G++ P Sbjct: 194 KEGELPDPTSYFDFADS----IYWSINRSKSDVSYGDIEKYWGKEFIMEELDGVKYLIHP 249 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 F Q N+ +V ++++ ++V+D++ G+G F + LA + VVG + Sbjct: 250 NSFFQTNSYQAVNLVKTVEKFVE---GEKVVDMYSGVGTFGVYLAKKGMKVVGFDSNAFA 306 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKL 379 +E +NA +N ++ F + E D+ GFD V++DP RAG +++++ Sbjct: 307 IEMANKNAEINNVEAEFFVASDREVDI-------KGFDTVIVDPPRAGLHPKLVKRLNDH 359 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 P IVYVSCNP T + E L Y I L LDMFPHT H+E Sbjct: 360 GPETIVYVSCNPKTFKVNIEQL--NNYIIEELIALDMFPHTPHIE 402 >UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU98_9FIRM Length = 498 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 126/494 (25%), Positives = 210/494 (42%), Gaps = 86/494 (17%) Query: 15 QIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 QII + +D +G+ R +G+ + + +P + ++ + +K A +++ L S Sbjct: 5 QIIEGVIERVDFPNKGIIRTEDGRQVIVKNTIPGQKVSASINKIRKGKAEGRLLEVLEKS 64 Query: 74 P-ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPW------- 125 P E + C H G CGGC Q D Q K+ + +LM + + D + Sbjct: 65 PLEGDKTGCVHAGECGGCTYQTLPYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGIKESP 124 Query: 126 ---GYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRAC-- 179 GYR + S K L +G K GS DIV V+ C I+ +L A Sbjct: 125 RQTGYRNKMEFSFGDEFKDGPLALGMHKRGSFYDIVTVENCQIVDEDFRKILSVTLAYFR 184 Query: 180 ---LGSLQAMRHLGHVE--LVQATSGTLMILRHTAP--------LSSADREKLERFSHSE 226 + +RH G++ LV+ T IL +++A +++E ++ Sbjct: 185 EKNITYYHKLRHTGYLRHLLVRKAVKTGEILVDLVTTTQTDFPGIAAAQMDEVESTLNNA 244 Query: 227 GLDLYLAPDSEILE----------------------------TVSGE---------MPWY 249 + + + E+LE TV+ E + Sbjct: 245 QENAFAGTEEELLEGWKAALLAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQDFFYE 304 Query: 250 DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL-DVQPEDR----------VLDLFCGMG 298 + GLR +P F Q N+ + + A E++ D P V DL+ G G Sbjct: 305 ELLGLRFKITPFSFFQTNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLYSGTG 364 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE---EDVTKQPWAKN 355 L+ A V+GVE + VE ++NA+LNGL N F ++ + + ++P Sbjct: 365 TIAQMLSPVAKKVIGVEIIEEAVEAAKENAQLNGLHNCEFIAGDVLKVIDSIEEKP---- 420 Query: 356 GFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 D ++LDP R G +++II+ ++VY+SC P +LARD E L GY + ++ + Sbjct: 421 --DYIVLDPPRDGINPKALEKIIRYNVPQMVYISCKPTSLARDLEVLQARGYEVKKVCCV 478 Query: 415 DMFPHTGHLESMVL 428 DMFP T H+ES+VL Sbjct: 479 DMFPSTFHVESVVL 492 >UniRef50_Q6NB80 Uncharacterized RNA methyltransferase RPA0948 n=11 Tax=Alphaproteobacteria RepID=Y948_RHOPA Length = 412 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 124/433 (28%), Positives = 188/433 (43%), Gaps = 39/433 (9%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I T++++ L G GV+ G ++P LP E E + R K++R SP+ Sbjct: 2 IQTLTIDQLGHRGDGVSLSQGGATYVPFALPGETVEAEPVQGHPD--RRKLLRVEVPSPD 59 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP-------WGYR 128 R P CPHFGVCGGC QH L+ L+ +++ DVP G Sbjct: 60 RVAPFCPHFGVCGGCAIQH----LRDEPYRTWKRNLVIETLAQAGIDVPVDPLIDAHGAG 115 Query: 129 RRARLSLNYLPKTQQ-LQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 RR R++L+ T L++GF S DI+ + CPIL P L L A +L + Sbjct: 116 RR-RITLHARRGTHDILKVGFSATASHDIIGIDHCPILDPGLNGALEAAWALAEALTPVG 174 Query: 188 HLGHVELVQATSGTLMILRHTAPLSS---------ADREKLERFSHSEGLDLYLAPDSEI 238 +++ +G + +R + PL A++ KL R + L L P Sbjct: 175 KPLDIQVTATENGLDIDVRGSGPLPPKMITSLSQLAEKHKLARLTRHSELVLLRRP---- 230 Query: 239 LETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 P ++T P F+Q A Q + A+ L +V DLFCG+G Sbjct: 231 --------PVVAIGKAKVTLPPGAFLQATALGEQTLAELAMAKLGRA--KQVADLFCGVG 280 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 F L LA +A PA+ + +GL+ V +L P ++ FD Sbjct: 281 PFALRLAEKARVFACDSDAPAVTALQKAAPATSGLKPVKAEARDLFRRPLAPPELRD-FD 339 Query: 359 KVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 VL DP R GA Q+ ++ VSCN T ARD++ L+ GY + R+ +D F Sbjct: 340 AVLFDPPRQGAQAQAAQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFK 399 Query: 419 HTGHLESMVLFSR 431 +T H+E + +F + Sbjct: 400 YTPHVELVAVFRK 412 >UniRef50_A0NR20 RNA methyltransferase putative, TrmA family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NR20_9RHOB Length = 410 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 121/431 (28%), Positives = 192/431 (44%), Gaps = 45/431 (10%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + L G GVA +++ LP E V + + Q V+ ++ SP+R Sbjct: 6 IEITTLGHRGDGVAETETGPIYVAEALPGETVRANVVDGRAQN---PVI--VTKSPDRIE 60 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALA-----RLMKHDVSEVIADVPWGYRRRARL 133 P C H+ CGGC QH + D K + R ++ DVS IA G RRRA L Sbjct: 61 PVCRHYHACGGCSVQHLAEDPYLAWKRGLVEKSLRDRGIETDVSSTIAATAGG-RRRAVL 119 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 + + +G+ + S +VD+ +CP+L P + LP +++ + + + Sbjct: 120 TATR--AGRHTLLGYHEKASHRLVDITECPVLDPVIVEALPGLKSLASEVLPKKGELRMT 177 Query: 194 LVQATSGTLMIL--------RHTAPLS-SADREKLERFSHSEGLDLYLAPDSEILETVSG 244 ++ T+G + L R LS + L R S + + L L P Sbjct: 178 VLVTTTGLDVALDKADKGYERKIPALSQKVVDQNLSRLSVNGEVILELRP---------- 227 Query: 245 EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 P D G+ + +P F Q + ++ V + DLF G+G F L L Sbjct: 228 --PLLDMGGIGIVAAPGGFAQATLAAEHALSKLVMDG--VGKAKTIADLFSGVGTFALRL 283 Query: 305 ATQAASVVGVEGVPALVEKGQQNARL-NGLQNVTFYHENLEEDVTKQPWAKNG---FDKV 360 QA +V VEG A + + R GL+ VTF D++++P K+ +D V Sbjct: 284 GRQA-NVHAVEGDAAALAAFDKALRKPQGLKKVTFERR----DLSRRPLVKDELEPYDAV 338 Query: 361 LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 + DP RAGA +Q+ + IV VSCNPATLARD LL GY + + +D F ++ Sbjct: 339 VFDPPRAGAQAQAEQLALSKVKTIVAVSCNPATLARDLRILLDGGYVLQSVTPVDQFHYS 398 Query: 421 GHLESMVLFSR 431 H+E++ + +R Sbjct: 399 PHIEAVAVLTR 409 >UniRef50_A7HR73 23S rRNA (Uracil-5-)-methyltransferase RumA n=4 Tax=Alphaproteobacteria RepID=A7HR73_PARL1 Length = 415 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 127/425 (29%), Positives = 196/425 (46%), Gaps = 25/425 (5%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 I + + L + GVA+ L++P +LPQE V D RA++ R L S +R Sbjct: 5 IEIVIETLGAQADGVAQTPQGPLYVPYVLPQERVLVRPAGD----GRAELRRVLDASADR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--VSEVIADVPWGYRRRARLS 134 P CPHF CGGC QH K A +A ++ +E+ VP R R R + Sbjct: 61 IAPACPHFTFCGGCSLQHMEAARYADWKWAQVATALRARGIEAEIAPLVPARPRSRRRAT 120 Query: 135 LNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVEL 194 + L +G+ S IV + +CP++ P++E LP + + + V + Sbjct: 121 FAATRTKKTLAIGYYAQASHTIVPIAECPLVVPEIERALPALAGLVAPGLSRTSRASVLV 180 Query: 195 VQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMP-WYDSNG 253 SG + + PL R +L + + L+ EI V+G P + D +G Sbjct: 181 TSTASGLDVAVTGGKPLDGPLRLELAARASAA-DIARLSWGGEI---VAGRRPPFVDLSG 236 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 L + P F+Q +V + V R+ DLF G G F+ LA ++A+V Sbjct: 237 LAVLPPPGAFLQPTREGEAALVRLVAQ--GVGKSVRIADLFAGCGTFSASLA-RSATVHA 293 Query: 314 VEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWAK---NGFDKVLLDPAR 366 VEG A + + R G L+ VT HE D+ ++P + + FD V+ DP R Sbjct: 294 VEGESASLAALARAVREQGPSLGLKPVT--HET--RDLARRPLLRSELDSFDAVVFDPPR 349 Query: 367 AGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 AGAA ++I + E + VSCNPAT ARD+ LL GY ++ L +D F + H+E + Sbjct: 350 AGAAAQAEEIARSEVPVVAAVSCNPATFARDARTLLDGGYALSELTPVDQFLWSPHIELV 409 Query: 427 VLFSR 431 +F + Sbjct: 410 GIFRK 414 >UniRef50_B9R3Z1 tRNA (Uracil-5-)-methyltransferase superfamily n=2 Tax=Rhodobacteraceae RepID=B9R3Z1_9RHOB Length = 410 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 121/423 (28%), Positives = 189/423 (44%), Gaps = 29/423 (6%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + +L G G+A +++ G LP E E + Q R + LS SP+R Sbjct: 6 LEITELGHRGDGIAFTGTGPVYVAGGLPGETVEAEI-----QNGRVQNPDYLSQSPDRIE 60 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-----DVSEVIADVPWGYRRRARL 133 P C H+ CGGC QH + K + + +K +V++ IA G RRRA Sbjct: 61 PVCRHYAACGGCSVQHLAEAPYLSWKRNLVEKALKTQGIDAEVAQTIAATEGG-RRRAAF 119 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 + + + +G+ + S +VD+ +CP+L P + + L +++ L + Sbjct: 120 TATR--AGRAVLLGYHEKASHKLVDISECPVLDPSITSALKGLKSLAADLVPKNGELRIT 177 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY-LAPDSEILETVSGEMPWYDSN 252 ++ TSG + + DR+ + LDL L+ + E+L V P D Sbjct: 178 VLSTTSGLDVAFDKAD--KAYDRKIPALSQKTVELDLARLSVNGEVLLEV--RPPLLDMG 233 Query: 253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVV 312 G L P F Q Q + L V V DLF G+G F L LA + A+V Sbjct: 234 GTGLVPPPGGFTQATLAAEQAL--SELVVAGVGKAKTVADLFSGVGTFALRLA-RTANVH 290 Query: 313 GVEGVPALVEKGQQNARL-NGLQNVTFYHENLEEDVTKQPWAKNG---FDKVLLDPARAG 368 VEG A + ++ R GL+ VTF + D+ ++P F V+ DP RAG Sbjct: 291 AVEGDSAAIAALDRSLRKPQGLKKVTFE----KRDLFRRPLVPEELEPFAAVVFDPPRAG 346 Query: 369 AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVL 428 A + + K + IV VSCNPATLARD L+ GY + + +D F + H+E++ + Sbjct: 347 AQAQAEMLAKSKVKTIVAVSCNPATLARDLRILIDGGYALHTVTPVDQFHFSPHIEAVAV 406 Query: 429 FSR 431 R Sbjct: 407 LKR 409 >UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVF8_OPITP Length = 493 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 127/453 (28%), Positives = 188/453 (41%), Gaps = 78/453 (17%) Query: 36 GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHA 95 G + +P LP E V + K ++ A +V L+ SP R P CP FG CGGCQ QH Sbjct: 63 GWVVMVPFTLPGERVRARVFRNHKNFSEADLVSVLTPSPHRVMPGCPLFGRCGGCQYQHL 122 Query: 96 SVDLQQRSKSAALARLMKH------DVSEVI-ADVPWGYRRR----------AR-LSLNY 137 + Q K +A L++H VS VI + +GYR + AR ++ Sbjct: 123 AYAEQLAWKRRQVAELLQHLGGVEFAVSPVIPSPREYGYRSKITPHFAAPKAARTIAAGS 182 Query: 138 LPKTQQ-------------------------LQMGFRKAGSS-DIVDVKQCPILAPQLEA 171 P Q+ +GF + G+ DI+DV +CPI + Sbjct: 183 TPAAQESSVPAAVSTPDGPGEARASSAAVPDWPIGFLRQGTRFDIIDVPRCPIATDAINT 242 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L +VRA L+ R + T G ++LR + D + + +E + + Sbjct: 243 RLAEVRA---ELRTQRD-------RYTRGATLLLRDAGGRVTTDYDAVV----TEEIGVV 288 Query: 232 LAPDSEILETVSGEMPWYDSNG--------LRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 L+ E P S LRL F RDF Q N + + E Sbjct: 289 G------LDDAGAEKPGLTSPAPSNRAGAPLRLHFLARDFFQNNPFILPAFTSYVREQAA 342 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 ++D +CG G F L A+ V GVE + V ++NA NG+ N +F + Sbjct: 343 ASGARFLVDAYCGSGLFALASASAFERVAGVEISESSVRFARENAAANGITNASFLAADA 402 Query: 344 EEDVT--KQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 P A++ V++DP R G +QQ+ P +VYVSC+PAT RD Sbjct: 403 AAIFAGLAFPAAES---VVVIDPPRKGCDREFLQQLFAFGPRAVVYVSCDPATQMRDLRD 459 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L AGY + + D+FP T HLE ++ R + Sbjct: 460 FLAAGYELIAVQPFDLFPQTRHLECVITLRRAR 492 >UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SWR8_9FIRM Length = 495 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 182/378 (48%), Gaps = 28/378 (7%) Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--HDVSEVIA-DVPWGYRRRARLSLN 136 +CP +CGGCQ + Q K + L+ V ++I + P+ YR + + Sbjct: 109 KCPISHLCGGCQYVDMPYEQQLAEKQKYIDDLLSVFGPVDKIIGMENPYHYRNKVTAAFR 168 Query: 137 YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA----------- 185 + K+ ++ G + G+ +I+ V+ C + + A++ + S + Sbjct: 169 RM-KSGEIISGVYEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGTGL 227 Query: 186 MRHLGHVELVQATSGTLMILRHTAPL--SSADREKLERFSHSEGL----DLYLAPDSEIL 239 +RHL + + + T ++I+ +P+ S + K +H E ++ + S ++ Sbjct: 228 IRHL-QIRVGRKTGQIMVIIVTASPVFPSKKNLAKALVTAHPEITTVVQNINMKDTSMVI 286 Query: 240 ----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 + V G+ D G R SP F QVN + + +A+++ D++ ++ V+D + Sbjct: 287 GDRNQVVYGKGYIEDILCGKRFRISPGSFYQVNPEQTEVLYGKAIKYADLKKKETVIDAY 346 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 CG+G + + +A V+GVE A V + N ++N +QNV Y + + Sbjct: 347 CGIGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRFMVDVADEG 406 Query: 355 NGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 + D V +DP R+G+ M +I L P R+VY+SC P +LARD + + K GY + R+ Sbjct: 407 DSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTKHGYQVIRMTP 466 Query: 414 LDMFPHTGHLESMVLFSR 431 +DMFP T +E++VL +R Sbjct: 467 VDMFPLTRGVETVVLLTR 484 >UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E3 Length = 454 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 112/421 (26%), Positives = 188/421 (44%), Gaps = 37/421 (8%) Query: 40 FIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDL 99 ++P + EV + + +K A++ R + + +C FG CGGC Q+ + Sbjct: 32 YVPDAYEGQEVEVRLLKKRKGNWEARLERVIKNPSYYIAAKCKFFGACGGCALQNLPYEK 91 Query: 100 QQRSKSAALARLMKHDVSEVIADVPW-GYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIV 157 Q K + +++ +V+E++ W YR + + K L +G K ++ DIV Sbjct: 92 QLERKLRWVNQILNFEVAEILGSPKWFQYRNKMEYTFGDTVKDGPLALGLHKKRTTFDIV 151 Query: 158 DVKQCPILAPQLEALLPKVRACLGSL--------QAMRHLGHVELV----QATSGTLMIL 205 V C I+ A+L RA L + + H G ++ + T+G ++ Sbjct: 152 TVDDCKIVDDGFNAIL---RATLXFFAVXNXPYYKKVSHQGFLKFLVVRRSETTGXFLVN 208 Query: 206 RHTAPLSSADREKLERFSHSEGLDLY-------------LAPDSEILETVSGEMPWYDSN 252 T+ + D + G + + PDS +E + G Y+ Sbjct: 209 IVTSSQIAYDFTAFVEAIKNTGFKIAGVLHTISDSPSDAIKPDS--VELLYGLNYIYEEI 266 Query: 253 -GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASV 311 GL+ SP F Q N + + A AL L + V DL+ G G +A +A V Sbjct: 267 LGLKFKISPFSFFQTNTKGAEVLYANALALLSDLEDKTVFDLYSGTGTIAQIMALKAKKV 326 Query: 312 VGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA- 370 VG+E V V ++NA+LNGL+N F ++ +T+ A G D +++DP R G Sbjct: 327 VGIEIVAEAVAAAKENAKLNGLENCEFIAGDV---LTQIDNADVGPDVIVVDPPRDGIHR 383 Query: 371 GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 +++II I+Y+SC +LARD A + GY +A+ +DMF T H+E++VL Sbjct: 384 KALEKIINFGVAEILYISCKATSLARDLVAFAEGGYHVAQSLCVDMFAQTYHVETVVLLK 443 Query: 431 R 431 R Sbjct: 444 R 444 >UniRef50_Q0FDP2 23S rRNA (Uracil-5-)-methyltransferase rumA n=2 Tax=Rhodobacterales RepID=Q0FDP2_9RHOB Length = 407 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 118/424 (27%), Positives = 196/424 (46%), Gaps = 35/424 (8%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 V+ L G G+ +F P LP E+ E V + + K+++ +SD R P Sbjct: 6 VDRLGQLGDGIIDTPNGEIFAPFTLPGEHIEGNV--ENGRVNSPKIIKPVSD---RVKPA 60 Query: 81 CPHFGVCGGCQQQHAS----VDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLN 136 C HF CGGC QHAS D + R AL+++ H I + G RRRA + Sbjct: 61 CKHFKSCGGCSLQHASDTVISDWKIRKTQDALSQVNLHPEFRPIINSKAGSRRRATFAAK 120 Query: 137 YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR--ACLGSLQAMRHLGHVEL 194 K + GF S I+++ +CPI P L + +P A LGS + + + + Sbjct: 121 RTKKGALV--GFHGRASDVIIEISECPISDPILLSGMPAFSQFAILGS--SRKAVLRISA 176 Query: 195 VQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGL 254 + + + + + LS+ + K + + + + D I ++ P GL Sbjct: 177 TVSGNSLDVKIDNGKKLSATEISKFAQICNQFKILRLMWNDDVIAQS----NPPSQKMGL 232 Query: 255 RLTFSPRD-FIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 P F+Q ++ LE + P RV+DLF G G F LP++++A +V Sbjct: 233 ADVIPPSGAFLQATKSGEAALIKTVLEI--IGPSKRVVDLFAGCGTFALPISSKA-TVHA 289 Query: 314 VEG---VPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF---DKVLLDPARA 367 +EG + A ++ G + A GL ++ ++ D+ ++P + F D +++DP RA Sbjct: 290 LEGDVNMIAALDSGWRAA--GGLHDI----KSETRDLFRRPLMPDEFKKIDAIVIDPPRA 343 Query: 368 GAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 GA + +I K RI +VSCNPAT ARD+ L GY + + ++D F H+E + Sbjct: 344 GAVSQVVEIAKANVGRIAFVSCNPATFARDASILCNNGYNLDWVQIIDQFLWNPHIELVA 403 Query: 428 LFSR 431 F++ Sbjct: 404 QFTK 407 >UniRef50_D2BIA5 RNA methyltransferase, TrmA family n=5 Tax=Dehalococcoides RepID=D2BIA5_DEHSV Length = 400 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 110/426 (25%), Positives = 191/426 (44%), Gaps = 57/426 (13%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I V + + SFG TL + G + E ++ + K A+V++ + S + Sbjct: 16 IENVCLEEGQSFGLTKVSLTDSTLEVFGGIKGETVDIRLFVHKAGRGYAQVIKVHTPSSD 75 Query: 76 RETPRCPHFGVCGGCQQQHAS----VDLQQRSKSAALARLMKH--DVSEVI-ADVPWGYR 128 R P CP+FG C GC QH + ++L+ R SA + H ++S VI +D GYR Sbjct: 76 RIAPSCPYFGDCTGCTFQHINYQHQLNLKHRIVSAEFEKAGLHSLNISPVIPSDDKGGYR 135 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 ARLS+ + +GF S + V QC I+ P + +L +++ G + + Sbjct: 136 NHARLSIYHA------NLGFVNRFSRRHIQVDQCQIMNPGINRVLGELQGKCGETRQLS- 188 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI---LETVSGE 245 H+ D YL I + SG+ Sbjct: 189 ---------------------------------IRHASNKDSYLIQPKLIKADINIESGQ 215 Query: 246 MPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 ++D G S F QVN +KM E L++ + ++D + G+G F + L Sbjct: 216 KEYHDLLMGHDFCISAASFFQVNNPQAKKMAKLIKEHLNLNGSETLVDAYAGVGTFAVLL 275 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 + V+ +E A V+ + N ++G+ N+ E+ + + + D ++LDP Sbjct: 276 SPDCKRVIAIEESAAAVKDAKLN--ISGIDNIELIQSKTEDVINR---FEEQMDALILDP 330 Query: 365 ARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 +R+GA V+ I + P +VYV+C+P++LARD + LL + ++++ +DMFP T H+ Sbjct: 331 SRSGAHPSVLATICQNPPRNLVYVACDPSSLARDLKILLAGPFELSQVIPVDMFPQTYHV 390 Query: 424 ESMVLF 429 E++ L Sbjct: 391 ETLALL 396 >UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzyme n=4 Tax=Leuconostocaceae RepID=Q03Z05_LEUMM Length = 463 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 119/452 (26%), Positives = 203/452 (44%), Gaps = 42/452 (9%) Query: 15 QIITVSVNDLDSFGQGVARHNGKT-LFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 Q + V V+D+ G G+ K L++ LP E + VT+ K AKV+ L S Sbjct: 18 QELIVVVDDIRIDGMGIVYVTAKYPLYVADALPGEKVHLLVTQVDKFSGYAKVLDWLESS 77 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---DVS---EVIADVPWGY 127 +R+ + G + + Q K A + RL + DVS + D P Y Sbjct: 78 DKRQNSDRQYLIDAGTAPLVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYY 137 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ--- 184 R + + + + + L GF K G+ D+V + + +++ + VR L Sbjct: 138 RNKTIVPVKW--QNDHLTSGFYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEKYDITA 195 Query: 185 --------AMRHL----GHV--ELVQATSGTLMILRHTAPLSSADREKLERF-----SHS 225 A+R++ G+ EL+ ++ H + + R +L ++S Sbjct: 196 FDPDLERGAIRYIMIRRGYYSHELMVVLVSNEEVISHETEIIADIRNQLTELKSLILNYS 255 Query: 226 EGLD-LYLAPDSEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 D + L+P++ IL GE YD+ G P F QVN + + A + D Sbjct: 256 PKKDYVLLSPNNRIL---WGEKAIYDTLLGYEFIIGPNSFYQVNPQTTEVLYDLAAQKAD 312 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 ++P D V+D + G+G + +A++ V+GVE VP V Q N ++N + N + Sbjct: 313 LKPTDTVIDAYSGIGTIGISVASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILA-- 370 Query: 344 EEDVTKQPWAKNGF--DKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + V + W + G D V +DP R G ++ + P +IVY+SCNP TL+RD+ Sbjct: 371 DAPVQFKKWQEQGLKPDVVFVDPPRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVE 430 Query: 401 LLKAGYTI-ARLAMLDMFPHTGHLESMVLFSR 431 +++ GY I + +D FP T H+ES+ +F + Sbjct: 431 IIENGYHIDGSVLPVDQFPQTSHVESITVFRK 462 >UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7Z6_MACCJ Length = 459 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 116/454 (25%), Positives = 205/454 (45%), Gaps = 55/454 (12%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 +++ L G+G+ K F+ G LP E VT+ +Y +AK+V+ S ER Sbjct: 14 LTIKRLGINGEGIGYFKRKITFVKGALPGEVIVAQVTDINPKYLQAKMVKIREKSNERVK 73 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADV-----PWGYRR 129 P+C F +CGGCQ QH S Q + K AL + H + I DV P+ YR Sbjct: 74 PKCNVFDLCGGCQLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIKDVKGMHNPYTYRN 133 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL------ 183 + + + + +++ G K S+ ++D+ +C + + +V+ + L Sbjct: 134 KNQFPVEKTGR--KVRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKKIMSELNIDACK 191 Query: 184 -----QAMRHLGHVELVQATSGTLMIL--RHTAPLSSAD--REKLERFS---------HS 225 + +RH+ V V +G + ++ +T L D E++ R + ++ Sbjct: 192 NPMREKGVRHI--VTRVALATGEIQVVFVTNTRHLKKQDLLAERVMRLAGVKSVALNINT 249 Query: 226 EGLDLYLAPDSEIL---ETVSGEMP--WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 E + + ++ ++ ET+ ++ YD S F Q+N + + Sbjct: 250 EKTSIVMGDETIVIAGEETIREQLQDHIYD-------LSAESFFQLNPRQTVVLYNEVRD 302 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + ++ V+D FCG G + LA A V G++ + NA LNG N F Sbjct: 303 AAALTGQENVVDAFCGTGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEV 362 Query: 341 ENLEEDVTKQPWAKNGF--DKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARD 397 + E + + W + GF D + +DP R G + ++ I +++P VY SCNP+TLA+D Sbjct: 363 GDASEKLNE--WIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKD 420 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L KA + + + +DMFP T +E++V +R Sbjct: 421 LAHLTKA-FQVEYIQPVDMFPQTAQVEAVVKLTR 453 >UniRef50_C8X3P2 (Uracil-5)-methyltransferase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3P2_DESRD Length = 391 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 115/431 (26%), Positives = 179/431 (41%), Gaps = 64/431 (14%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFI--PGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 ++ + V L G+G+AR + I PG+LP E + +T+ K Y RAK L + Sbjct: 5 LMRLRVEKLIWRGRGLARPADAPVVIVEPGVLPGEEIQARITKRHKDYLRAKCETVLEPA 64 Query: 74 PERETPRCPHFGVCGGCQ----QQHASVDLQQRSKSAALARLMKHDVSEVIADVP----- 124 ER CP CGGC+ Q + L+Q + L R + +V + + P Sbjct: 65 SERRPHPCPASPACGGCRFGITSQRTQLALKQAIMADTLRRHLGKEVPASVLESPQVVPS 124 Query: 125 ---WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 W YR R +L ++ Q Q GS V +++C + A L LP++ Sbjct: 125 PKGWRYRWRGQLHVH------QGQPHLLGQGSHAKVPIERCLLFARPLAEALPRL----- 173 Query: 182 SLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILET 241 + L RHT S D + LET Sbjct: 174 -----------------ARDLPDGRHTVAASPVDHAV-----------------ASALET 199 Query: 242 VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 +P GL + P+ F Q N +N +V W RV DL+ G GNF Sbjct: 200 HRLSLPL--PGGLAVDVLPQTFFQANQSLNPTLVEHIRSWCPAG--SRVADLYAGAGNFG 255 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 LPLA V VEG ++ + A +GL + +L + +P + D V+ Sbjct: 256 LPLAQAGNPVFAVEGDGPALQAARTTAARSGLDHWQGRQADLRHERAWKPILEFQPDVVV 315 Query: 362 LDPARAGAAGVMQQIIKLEPI-RIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 DP R+G+ V + ++ + + RI+++SC+ ARD + L G+ + LA+ DMFP T Sbjct: 316 ADPPRSGSGPVCRHLLHIPSLERIIWISCDLTNSARDVRSFLTQGWQLTSLALFDMFPQT 375 Query: 421 GHLESMVLFSR 431 H+E + + R Sbjct: 376 WHMEGVFILDR 386 >UniRef50_Q8YFM4 Uncharacterized RNA methyltransferase BMEI1496 n=40 Tax=Rhizobiales RepID=Y1496_BRUME Length = 415 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 125/439 (28%), Positives = 204/439 (46%), Gaps = 47/439 (10%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 T+ + +++ + + G GVA +++P LP E V V DK RA ++ L Sbjct: 2 TSSKTGQITIRSIGAGGDGVANLPDGQIYVPFTLPGEV--VNVARDKN---RATLMALLE 56 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-----DVSEVIADVPWG 126 SPER+ P C HF CGGC QH + + K + +K +V+ ++A P Sbjct: 57 ASPERQNPACRHFEDCGGCALQHWQDEPYRLWKRELVVGALKGRGTDVEVAPLVACNPH- 115 Query: 127 YRRRARLSLNYLPKTQQ-LQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR---ACLG- 181 RRRA + KT++ + +GF + S +I+D+ +CP+ P++ A L +R A L Sbjct: 116 TRRRAVFAAR---KTEKGVLLGFNRHQSHEIIDIVECPVTVPEIIARLDDLREVGALLAP 172 Query: 182 -----SLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS 236 L A ++L + G L + A + ++ R SH + Sbjct: 173 GSGPFKLAATLTESGLDLAASGCGKLNDEQRRALTALVIKKDFARLSH----------EG 222 Query: 237 EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 EI+ V + P + + P F+Q A + M A L L RV DLFCG Sbjct: 223 EII--VEPKKPLIHFGKVPVPIPPGCFLQATAEAEETMAALVLAHLG--KARRVADLFCG 278 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNAR-LNGLQNVTFYHENLEEDVTKQPWAKN 355 +G F L +A ++A V VE A + + R + GL+ V+ D+ ++P Sbjct: 279 VGTFALRIAEKSA-VHAVENDAAALAALDRGVRHVQGLKPVSIERR----DLFRRPLMTK 333 Query: 356 ---GFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 ++ V+ DP RAGA ++ K + ++V +SCNP TLARD L K GY I R+ Sbjct: 334 ELLPYNAVVFDPPRAGAEEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVT 393 Query: 413 MLDMFPHTGHLESMVLFSR 431 +D F + H+E++ + ++ Sbjct: 394 PIDQFLWSAHVEAVAVLTK 412 >UniRef50_Q2CJR9 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJR9_9RHOB Length = 386 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 109/376 (28%), Positives = 181/376 (48%), Gaps = 35/376 (9%) Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSK-----SAALARLMKHDVSEVIADVPWGY 127 SP R+TP CPH+ +CGGC QHA K A AR ++ +++ + P+ Sbjct: 30 SPHRQTPPCPHYHLCGGCALQHADDAFVAEWKIGRVVQALKARGLEAEIAGIATSPPFS- 88 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 RRRA+LS + K +GF S +V+V QC IL P+L AL+P + A + + + + Sbjct: 89 RRRAKLSGRRMKKRSL--VGFHARASDVLVEVPQCQILRPRLVALVPALEALMPLIGSRK 146 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMP 247 + +G + + + L++ R L F+ +GL + + I+ +P Sbjct: 147 GEVDFTVTDTANGPDLHIGNGKELTAELRVALAAFAQDQGLSRLVYREEPIVT----RLP 202 Query: 248 WYDSNG-LRLTFSPRDFIQVNAGVNQKM--VARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 + G + P F+Q A + V RA V +RV+DLF G G F+LPL Sbjct: 203 PVQTFGRAAVAPPPGAFLQATADGEAALLDVVRAA----VGDAERVVDLFAGCGTFSLPL 258 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNG--LQNVT------FYHENLEEDVTKQPWAKNG 356 A +A V VE ++ + R G L+ VT F + + +D+ + Sbjct: 259 AERA-EVHAVETYAPMLAALDRGWRETGGGLKRVTTEARDLFRNPLIADDLAR------- 310 Query: 357 FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 FD ++DP RAGA + ++ + RI +SCNP T ARD++ L++AG+ + + ++D Sbjct: 311 FDAAVIDPPRAGAQAQVAELARSRLTRIAMISCNPVTFARDAQTLVEAGFRLGPITVVDQ 370 Query: 417 FPHTGHLESMVLFSRV 432 F + H+E +R+ Sbjct: 371 FRWSTHVELACAVTRL 386 >UniRef50_A5FVX5 (Uracil-5)-methyltransferase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FVX5_ACICJ Length = 362 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/368 (29%), Positives = 173/368 (47%), Gaps = 21/368 (5%) Query: 73 SPERETPRCPHFGVCGGCQQQH-ASVDLQQRSKSAALARLMKHDVSEV----IADVPWGY 127 +P P C HFGVCGGC Q A L + + A L + ++ + +P G Sbjct: 3 APATVVPVCRHFGVCGGCSAQDVAPAALAEAKHARLAAALARAGFADPHPAPVVSIPMGT 62 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 RRRA ++ + +++GF + S +VD+ +CP+L P+LEAL+ +RA L LQ +R Sbjct: 63 RRRADFAVARV--AGAVRLGFHETRSRTVVDIAECPLLRPELEALIDPLRALLARLQGLR 120 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD-LYLAPDSEILETVSGEM 246 V + +G + + ++ADR +L F+ L + L + ++ Sbjct: 121 KSADVRVNLLDAGADVSVALDGEATAADRARLVAFAQEHDLPRISLGAEPVLIR----RP 176 Query: 247 PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL--DVQPEDRVLDLFCGMGNFTLPL 304 P D GL + P F+Q + + A L L + + R+++L+ G+G T L Sbjct: 177 PTLDCAGLVVLPPPAAFLQPSFEGEAAIRAAVLAGLPPKLTRKSRIVELYAGIGTLTGAL 236 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN---GFDKVL 361 A A V VEG + + AR G + D+ ++P G V+ Sbjct: 237 AAHA-RVHAVEGSAPALAALDEAARTGGQAGRI---DTERRDLARRPVTAKELAGAACVV 292 Query: 362 LDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 LDP GA + +++ + RIVYVSCNP LAR++ +AGY + +D FP + Sbjct: 293 LDPPFDGAGPQIAPLVEAKVQRIVYVSCNPEALAREAAPFARAGYRLLASTPIDQFPGSD 352 Query: 422 HLESMVLF 429 HLES+V+ Sbjct: 353 HLESVVVL 360 >UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaerococcus RepID=C7RHR1_ANAPD Length = 457 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 106/436 (24%), Positives = 194/436 (44%), Gaps = 39/436 (8%) Query: 34 HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP-ERETPRCPHFGVCGGCQQ 92 +GK + G L + +V + K +AK++ + S E T C + +CGGC Sbjct: 25 EDGKLVEFKGGLLGQRVKVKAKKRNKDKIKAKLIETIEKSDLENSTNTCDNPDICGGCAY 84 Query: 93 QHASVDLQQRSKSAALARLMKHDVSEVIADVPWG-------YRRRARLSLNYLPKTQQLQ 145 Q + + + K + L K + + D+ YR + + K L Sbjct: 85 QKLAYETELMLKVDMIKNLFKDNSIDYSGDIKINQSPKTKAYRNKMEYTFGDSKKGGDLV 144 Query: 146 MGF-RKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH--------LGHVELVQ 196 +G R+ +IVD C I+ + V+A + + L H+ + + Sbjct: 145 LGLHRQNRFYEIVDTTNCNIIDGDFNTIRESVQAYFREKKTDFYHKRTREGLLRHLIIRK 204 Query: 197 A-TSGTLMILRHTAPLSSADREKLERFSHSE-GLDL--------YLAPDS-------EIL 239 A +G +M++ T S D ++ F + +DL ++ DS E L Sbjct: 205 AHRTGEIMVILVTTSDESFDSLRINLFLNKLLSIDLVGKIVSVYHVINDSPADAVIVEKL 264 Query: 240 ETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + G E + GL SP F Q N +K+ +A + ++ VLDL+ G G Sbjct: 265 NLIYGKEFIKEEMLGLTFNISPFSFFQPNIYTAEKLYQKAFDLANINQSMDVLDLYSGTG 324 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 T +A +A + G+E V ++K +NA++N + N+ F ++ E++ K + +D Sbjct: 325 TITQVMAQRARTATGIEIVEEAIDKAWENAKINEIDNINFLCGDVLEEIEK---VGDKYD 381 Query: 359 KVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 ++LDP RAG + +++I+K++ + +Y+SCNP T + + + G+ I + D F Sbjct: 382 VIILDPPRAGISPKSLEKILKIDTEKFIYISCNPKTQVENLKEFINQGFEIKDYEIYDQF 441 Query: 418 PHTGHLESMVLFSRVK 433 P + HLE++ L +R K Sbjct: 442 PKSRHLEAIALLTRKK 457 >UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E1X6_9CHLO Length = 473 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 135/476 (28%), Positives = 207/476 (43%), Gaps = 64/476 (13%) Query: 15 QIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKK--QYARAKVVRRLS 71 ++T+ L G+GV + G +F +P E E VT K ++A A V +S Sbjct: 4 DVLTLECTSLAFGGRGVCKLPGGFVVFCDRAVPGETLEARVTSLKGGGRFAEATKVSSIS 63 Query: 72 DSPERETPRCPHFGVCGGCQQQHAS----VDLQQRSKSAALARLMKHD---VSEVIAD-V 123 R CPHF CGGC Q + + +++ + R+ K D V ++ D V Sbjct: 64 PCEHRTAAPCPHFERCGGCTWQDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVGDCV 123 Query: 124 PWG----YRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQ---CPILAPQLEALLPK 175 P YR + + + + +G R +G+ SD+V++ C + P + +L Sbjct: 124 PSDKTERYRNKMEFAFGPGANGRGVVIGLRPSGNHSDLVEIGNPDGCLLQHPVADEVLRG 183 Query: 176 VRACLGS------LQAM-RHLGH-------VELVQATSGTLMILRHTAPLSSADRE---- 217 RA L S L A R G V + +G + A + D E Sbjct: 184 CRAHLDSNGNSSLLDAFNRRTGEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDEDAAL 243 Query: 218 --------KLERFSHSEGLDL----YLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQ 265 K+ + S G D + D E+L + +P G+ S F Q Sbjct: 244 RGLAEAIAKVRGVASSGGGDADGEGWSGEDVEVLSGAA-TLP-MKLRGVTFALSAPSFFQ 301 Query: 266 VNAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK 323 N +K+VA + + + VLDLFCG+G L +A +A V G E VP V+ Sbjct: 302 TNTDQAEKLVAAVEDACGFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKD 361 Query: 324 GQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPI 382 ++NA NG+ N TF +L + P G D V+ DPARAG + ++++ + Sbjct: 362 AERNAEANGITNATFRRGDLAKLKASLP----GPDIVIADPARAGMDESLVKVLRSIGAE 417 Query: 383 RIVYVSCNPATLARD------SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 RIVYVSCNPAT ARD + A Y + +DMFPHT H+E++V+ R+ Sbjct: 418 RIVYVSCNPATQARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVLDRI 473 >UniRef50_B9KPS4 23S rRNA (Uracil-5-)-methyltransferase RumA n=11 Tax=Rhodobacteraceae RepID=B9KPS4_RHOSK Length = 404 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 127/428 (29%), Positives = 194/428 (45%), Gaps = 39/428 (9%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V++ L G G+ G+ +F+ G LP E E V +D R R ++ SP+R Sbjct: 1 MIVTIERLGHLGDGI----GQGVFVSGALPGETVEGEVVQD-----RMAAPRIVTPSPDR 51 Query: 77 ETPRCPHFGVCGGCQQQHAS----VDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRAR 132 P CPH CGGC QHAS D +Q +ALA IA P RRRA Sbjct: 52 VRPPCPHARGCGGCLLQHASDGFVADWKQEVVRSALAGQGIEAPFRPIAVSPPASRRRAT 111 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHV 192 LS K L +GF S IV + +C +L P L A +P + A + + + + Sbjct: 112 LSARRT-KGGAL-VGFHARQSGTIVAIPECKLLHPDLMAAMPALEALVKTGGSRSAELSL 169 Query: 193 ELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSN 252 + ++ G + + PL + R L + + ++ L I V P+ + Sbjct: 170 TVTRSLGGPDVAVTGGKPLDAGLRAALAQVAEAQALARLTWEGETIALRVPPAQPFGPA- 228 Query: 253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR-VLDLFCGMGNFTLPLATQAASV 311 R+ P F+Q A ++A + + E R V DLF G G F+LPLA A V Sbjct: 229 --RVVPPPSAFLQATAEGEAALLAAVRDAIG---EARTVTDLFAGAGTFSLPLAA-GAEV 282 Query: 312 VGVEGVPAL---VEKGQQNARLNGLQNVT-----FYHENLEEDVTKQPWAKNGFDKVLLD 363 VEG A+ +++G + A GL+ VT + LE D ++ + V++D Sbjct: 283 HAVEGDAAMMAALDRGWRQA--PGLKRVTVETRDLFRRPLEPDELRR------TEAVVID 334 Query: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 P RAGA + + + +VSCNP T ARD+ L++ GY + + ++D F + H+ Sbjct: 335 PPRAGAEAQARALACAAVPVVAFVSCNPVTFARDALILMRGGYRLDWVQVVDQFRWSSHV 394 Query: 424 ESMVLFSR 431 E FSR Sbjct: 395 ELAARFSR 402 >UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQU7_LAWIP Length = 470 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/447 (23%), Positives = 204/447 (45%), Gaps = 38/447 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + + S G+G+ R K +F+P +P + V +T ++ +V + + S Sbjct: 15 LVLDITSIVSDGRGLGRFENKVVFVPHTVPGQKVLVNITSVHSKFLEGEVKQIIKPSKYE 74 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADVP----WGYR 128 P C H CGGC QH Q K AL R+ K + ++ +P W YR Sbjct: 75 REPICIHAIQCGGCTWQHIQYKHQIIWKKQIIQDALERIGKVNNPVILDVIPSPCEWRYR 134 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA--- 185 + + P + +G ++ S +++ V C + + ++ VR + Q Sbjct: 135 NKMVFAFAPSPCLSTVLLGLKRVDSHEVIPVTDCLLQSKNTMKIVEIVRHWVRHEQTSLE 194 Query: 186 -----MRHLGHVELVQATSGTLMI-----LRHTAPLSSADREKL-ERFSHS-EGLD---- 229 +++ + + + +G +++ ++T + D + L +R + +G++ Sbjct: 195 KKILTLKYFRFLIIRETITGDILVELIVNKKNTLIENKFDEQALGKRLAQCLKGVEAIKG 254 Query: 230 LYLAPDSEILETVSGE-MPWYDSN--------GLRLTFSPRDFIQVNAGVNQKMVARALE 280 + L+ +++ + E + W++ + L+ +F Q+N + + ++ L Sbjct: 255 IILSRRTQVSDIAYSEYIIWHEGERFLEEQVGDIVLSRGNDNFFQINTKATEILYSKILS 314 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + ++ V DL+ G+G+ L LA + V+GVE + A + +N G N +F Sbjct: 315 MAQLTGKELVWDLYTGVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQ 374 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSE 399 ++ + Q D V++DP RAG V++ +I+L P R +YVSCNP T ARD Sbjct: 375 DDAFSFIRSQIQKGITPDIVIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFARDI- 433 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESM 426 A+L + I + +D+FPHT H+E++ Sbjct: 434 AMLSPHFVIQQTQPVDLFPHTPHVETV 460 >UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycoplasma RepID=A5IZA4_MYCAP Length = 446 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/436 (24%), Positives = 206/436 (47%), Gaps = 30/436 (6%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 + T + +I V D G G + + +F+ LLP E A++ + + ++A AKV+ Sbjct: 4 QNNTVVKNVIAV---DHSYEGLGTVKTDDYPIFVENLLPGERADILIKKANSKFAFAKVI 60 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--SEVI----A 121 +R ++S +R G + S Q K + +L K ++ ++++ + Sbjct: 61 KRYNESTKRIKVVNEKLMESGSAPLANISYSNQLEFKENFVKQLFKRNIHYTDILPILKS 120 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 D W YR + L + T +++G + S ++++ +++ + E +L + + Sbjct: 121 DYEWRYRNKLLLFTKNVQNT--IKIGLYEKNSHNLIEQDSYDLVSNEAENVLIWLSKNIN 178 Query: 182 SLQAMRH----LGHVELVQATSGTLMILRHTAPLSSADREK------LERFSHSEGLDLY 231 ++ L + L ++ ++L TA + D K + F + E + + Sbjct: 179 KYDCFKNVKNALTSITLRESYVNKKIMLYFTAS-KAFDLSKQFVNDIAKEFENIETI-MV 236 Query: 232 LAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRV 290 + D + +S + D G ++ F Q+N+ +K+ L+ L++ V Sbjct: 237 IVNDKVVYSYLSEKSYLIDKIGKFSFKYNWNSFFQINSNQTEKLYLLLLDNLNLDKSKVV 296 Query: 291 LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 LD +CG+G +L LA +A V G+E +V++ NA+ N L N + E + DV K Sbjct: 297 LDAYCGIGTISLFLAQKAKKVYGLE----IVKEAVINAKENALDNSIYNTEFISGDVIKT 352 Query: 351 PWAKN-GFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 + N D V++DP R+G ++ + +II ++P I Y+SCNP T+ RD + L+KAGY + Sbjct: 353 IDSINEKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYEL 412 Query: 409 ARLAMLDMFPHTGHLE 424 + L DMF T H+E Sbjct: 413 SFLRPCDMFSQTYHIE 428 >UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clostridiales RepID=A9KRF2_CLOPH Length = 554 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 107/415 (25%), Positives = 195/415 (46%), Gaps = 28/415 (6%) Query: 46 PQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR--CPHFGVCGGCQQQHASVDLQQRS 103 P+ ++ T+ ++K++ + +L S +++ CPH CGGC + Q + Sbjct: 141 PRSQSKGTIVKNKEEKNSVEKGSKLRTSKKKKYGEYECPHSKKCGGCHYLDLPYEEQLKI 200 Query: 104 KSAALARLMKH--DVSEVIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK 160 K +++L+ V ++ + P+ YR + + K + G K G+ I+ Sbjct: 201 KQKQVSKLLSDFCKVHPILGMEHPYHYRNKVQAVFGRDAKGNIIS-GVYKEGTHQIIPTT 259 Query: 161 QCPILAPQLEALLPKVRACLGSLQAMRH--------LGHVELVQA-TSGTLMI-LRHTAP 210 C I + + ++ +R L S + + L +V + + TSG +M+ L +P Sbjct: 260 SCLIEDKKADEIIGTIRGMLKSFKIKTYDEDSGYGLLRYVLVKRGFTSGEIMVVLVIASP 319 Query: 211 LSSADREKLE--RFSHSE----GLDLYLAPDSEIL---ETVSGEMPWYDSN--GLRLTFS 259 + + + + R +H E L++ DS IL ETV + + G S Sbjct: 320 ILPSKKNFVAALRKAHPEITTIVLNINNRTDSLILGDRETVLYGKGYIEDTLCGNVFRIS 379 Query: 260 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 + F QVN +++ A++ + ++RV+D +CG+G L + A V+GVE Sbjct: 380 SKSFYQVNPVQTERLYQLAIKAAGLTGKERVIDAYCGIGTIGLVASKNAKEVLGVEVNKE 439 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIK 378 ++ NA+ NG+ N FY+ + E + D V++DP RAG+ + + Sbjct: 440 AIKDAIANAKRNGITNEHFYNSDATEFMLAMAEKGEKADVVIMDPPRAGSTEQFIDAVES 499 Query: 379 LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 ++P R+VY+SCNP TL RD + K GY + +DMFP TGH+E++ L ++K Sbjct: 500 VQPSRVVYISCNPVTLQRDLKYFTKKGYQVKEAWPVDMFPWTGHVETVCLLYKMK 554 >UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCG8_9FIRM Length = 542 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 117/437 (26%), Positives = 206/437 (47%), Gaps = 41/437 (9%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87 G+G+ N +F+PG L E +V + +K+YA V + S +R P+C C Sbjct: 12 GEGIGYLNRTPVFVPGALLDEEIDVKIVTKEKRYAIGSVNYIIKKSKDRIQPKCFVHHAC 71 Query: 88 GGCQQQHASVDLQQRSKSAALAR-LMKH------DVSEVI-ADVPWGYRRRARLSLNYLP 139 GC A Q + K + L + L+K+ V +VI ++ +GYR + +L ++ L Sbjct: 72 KGCPLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYRNQCKLPVS-LN 130 Query: 140 KTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE------ 193 K QL GF S+ ++K+C + +E + +V L + H + Sbjct: 131 KEGQLCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPYNHHTKSGIRSL 190 Query: 194 LVQATSGTLMILRHTAPLSSADREK----LERFSHSEGLDLYLAPDSEILET-------- 241 +V+ G ++ L + E +E H G+ + T Sbjct: 191 VVRGFDG-----KYQCTLVTGHDELSCSLIEDILHIRGMYSLWQSIHTVKNTAEVFGKQM 245 Query: 242 --VSGE--MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 + GE +P++ +GL L SPR F Q+N K++ + + L + R+++ + G+ Sbjct: 246 VHLGGEKQLPFH-FDGLDLEVSPRSFFQLNTA-QAKVLYQTIASLVKGHKKRIVEAYSGI 303 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF 357 G +L L +A ++G+E + V QNA+ N ++V F ++ +T K Sbjct: 304 GAISLYLRDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAASKLTYLSKNKE-I 362 Query: 358 DKVLLDPARAGAAGVMQQIIKLEPIR-IVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 D +++DP R+G M + + I+ I+YVSCNPATL ++ A+L+ Y + R+ +DM Sbjct: 363 DVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNL-AVLQEKYRVQRVIPIDM 421 Query: 417 FPHTGHLESMVLFSRVK 433 FP+T H+E++VL S K Sbjct: 422 FPNTQHVETVVLLSHKK 438 >UniRef50_Q89RW4 Uncharacterized RNA methyltransferase bll2648 n=17 Tax=Rhizobiales RepID=Y2648_BRAJA Length = 415 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 122/421 (28%), Positives = 187/421 (44%), Gaps = 22/421 (5%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 ++ + G GVA G+ +++P L E EV R K++ SPER P Sbjct: 7 IDHVGHRGDGVALGAGEAIYVPYALGGETVEVDHVAGNHP-DRRKLLAVDVASPERVAPF 65 Query: 81 CPHFGVCGGCQQQH-ASVDLQQRSKSAALARLMKHDVSEVIADV--PWGYRRRARLSLNY 137 CPHFG+CGGC QH A+ +S + L + + +A + G RR R++L+ Sbjct: 66 CPHFGICGGCAIQHWAAEPYHAWKRSIVVETLAQAGIDCEVAPLVDAHGVGRR-RVTLHG 124 Query: 138 LPKTQQ-LQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC---LGSLQAMRHLGHVE 193 T L++GF A S D++ + +CPIL P L+ L A L S + ++ Sbjct: 125 RFGTHDILKVGFSAASSHDVIPIHRCPILDPALDGALDAAWALAEPLTSKMPVTKPLDIQ 184 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG 253 + T+G + +R + PL + L R + L +L+ + P Sbjct: 185 VTATTNGLDVDVRGSGPLPTPLVTALSRVAEQHRLARLTRHGELVLQRLP---PTVKMGR 241 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 +T P F+Q + + + E + E VLDLFCG+G F L LA + A V Sbjct: 242 TEVTLPPGSFLQATVAGEETLASLVAERVGKAKE--VLDLFCGVGPFALRLA-EKARVTA 298 Query: 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN---GFDKVLLDPARAGAA 370 + V + AR GL+ + D+ ++P FD V+ DP R GA Sbjct: 299 YDSDAGAVAALAKAARTPGLKPIRCE----PRDLFRRPLVPQELRDFDAVVFDPPRQGAQ 354 Query: 371 GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 ++ IV VSCN AT ARD+ L+ GY I + +D F HT H+E + F+ Sbjct: 355 AQALKLAASTVPVIVAVSCNVATFARDARLLIDGGYRIDGVVPVDQFRHTPHVELVARFA 414 Query: 431 R 431 R Sbjct: 415 R 415 >UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ40_9FIRM Length = 450 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 114/424 (26%), Positives = 187/424 (44%), Gaps = 32/424 (7%) Query: 37 KTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHAS 96 K + G + + V V ++++ AK++ L SP P CP++ CGGC Q Sbjct: 29 KKVNFKGGIEGQKVSVVVGRKREKHMEAKLLEILEKSPLETNPTCPNYIECGGCSYQSVP 88 Query: 97 VDLQQRSKSAALARLMKHDVSEV--IADVPW--GYRRRARLSLNYLPKTQQLQMGFRKAG 152 + + + K + L + SE I + P YR + + + K + +G K Sbjct: 89 YEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAYRNKMEYTFADMYKDSPIMLGMHKKN 148 Query: 153 S-SDIVDVKQCPILAPQLE----ALLPKVR-ACLGSLQAMRHLG---HVELVQA-TSGTL 202 +++D K+C ++ E A++ VR L ++ H G H+ + A T+G + Sbjct: 149 RFYEVIDTKECNLVHIDFEIIRNAVIDFVREKNLPFVKKRTHEGLLRHLIIRYALTTGEI 208 Query: 203 MILRHTAPLSSADRE---------KLE----RFSHSEGLDLYLAPDSEILETVSG-EMPW 248 M+ T S D + KLE H+E L A E + + G E Sbjct: 209 MVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVHTENDSLADAVVPEKINIIFGKEYIT 268 Query: 249 YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA 308 L +P F Q N + ++A+E V DL+ G G +A +A Sbjct: 269 EKIFDLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVVFDLYSGTGTIGQIVARKA 328 Query: 309 ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG 368 +V G+E V VE ++A+ NGL N TF ++ E++ + K D +++DP R G Sbjct: 329 KAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDVLEEIENR---KEMVDVIIVDPPRDG 385 Query: 369 A-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 +++II IVY+SCNP T RD + LL+ GY + L + + FP T H E++ Sbjct: 386 INQKALEKIISCGAKTIVYISCNPKTQKRDIQILLQNGYKLITLKIFNQFPRTVHCEAVA 445 Query: 428 LFSR 431 L R Sbjct: 446 LLER 449 >UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1 Tax=Nanoarchaeum equitans RepID=Y053_NANEQ Length = 447 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 117/437 (26%), Positives = 198/437 (45%), Gaps = 43/437 (9%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + D G GV G + +P P + EV V K+ ++V+ + +SP R Sbjct: 27 MKIYIEGFDEKGYGV----GNNIHVPFAYPGDIVEVKVRRKGKK-KIGEIVKIIEESPYR 81 Query: 77 ETPR-CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSL 135 + + C H G CGGC Q K + L +D + + YR R + Sbjct: 82 TSNKYCAHLGKCGGCLWGLMDYQYQLEFKKKVIENLFGYDKDIIPSPKTIYYRNR----M 137 Query: 136 NYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKV-----RACLGSLQAMRHL 189 +Y P ++ + ++ G + +K+C +L+ + E ++ + + + S ++H Sbjct: 138 DY-PIYNKVSL--KEPGKWYGYIPIKECKMLSKEAEIIINEFNKFIEKYKIPSWDTVKHT 194 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL-DLYLAPDSEILE-----TVS 243 G + + G R ++ ++ E + E + DL + I E ++S Sbjct: 195 GFLRYLVIREGKFTKERMIHIITYKRKKFEELWDFIENIKDLVTSVYWGIREDLGDVSIS 254 Query: 244 GEMP-WYDSNGLR-------LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 ++ +Y S LR SP F Q N+ +V E+L+ D VLDL+ Sbjct: 255 EKLYHYYGSKFLRERILDIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYS 314 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G+G F+L +A + V+G+E V VE + NA +N + E + V K P K Sbjct: 315 GVGLFSLQIANEVKKVIGIEIVEEAVEMAKLNASINNID-----AEFIASPVEKAPIIKA 369 Query: 356 GFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 +K+++DP RAG ++ I K+ P IVYVSCNP T RD L GY I + L Sbjct: 370 --NKIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKL--KGYKIIDMQPL 425 Query: 415 DMFPHTGHLESMVLFSR 431 DMFP+T H+E+++L + Sbjct: 426 DMFPNTPHIENVILMKK 442 >UniRef50_C7JBP0 Ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase n=8 Tax=Acetobacter pasteurianus RepID=C7JBP0_ACEP3 Length = 432 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 125/435 (28%), Positives = 196/435 (45%), Gaps = 53/435 (12%) Query: 24 LDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCP 82 L + G G R +G+ +IP L E+ +T K + ++ L SP+R+ P C Sbjct: 12 LATQGDGAVRTPDGRMAYIPETLAGEHIRLT----KDSEGKWRLAEVLLPSPDRQIPPCS 67 Query: 83 HFGVCGGCQQQHA--SVDLQQRSKSAALARLMKHDVSEVIA----DVPWGYRRRARLSLN 136 F CGGC QH + LQ + + A L K S + A V RRRA L++ Sbjct: 68 LFEHCGGCTLQHVKPAAILQWKVATVQHA-LQKAGFSNLPAFSAKQVQPHSRRRADLAVR 126 Query: 137 YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQ 196 P + +G S ++ D+ C +L P + A LP RA L SL A+R ++ + Sbjct: 127 RQPDG--IMIGLHARNSHEVTDLTTCVVLHPDILAALPAFRATLRSLNAIRREANLHINL 184 Query: 197 ATSGTLMILRHTAPLSSADREKLERFSHSE-------------GLDLYLAPDSEILETV- 242 SG ++L+ PL++ DR +L + + + GL A +++T+ Sbjct: 185 LDSGLDVLLQTDGPLTAPDRVRLAQLATEQHIPRISWQQIKDTGLPEVAAQSGSVVQTIA 244 Query: 243 SGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 S ++ + T +IQ + V ++L + D + +L+ G G T Sbjct: 245 SHQIAPPAGTFFQATRESEQYIQ-------EAVVKSLP-TKLNRRDVITELYAGCGTLTF 296 Query: 303 PLATQAASVVGVEG-VPAL--VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 359 PLA + A V EG PAL ++K R++ D+ QP Sbjct: 297 PLA-EHARVNAYEGYAPALEALKKATGGTRISPFC----------RDLNHQPLLAKEIAA 345 Query: 360 ---VLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 V+LDP AGA M+QI + P IVYVSCNPA L +D+ L KAGYT+ + ++D Sbjct: 346 SAVVVLDPPHAGAKLQMRQIAQGLPNHIVYVSCNPAALVQDASLLAKAGYTVENVTVIDQ 405 Query: 417 FPHTGHLESMVLFSR 431 F + +E++ F R Sbjct: 406 FLWSAEIEAVCSFKR 420 >UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNG0_9FIRM Length = 436 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 116/438 (26%), Positives = 205/438 (46%), Gaps = 46/438 (10%) Query: 28 GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKV--------VRRLSDSPERETP 79 G+G+A K +F+PG P E E T++E K YA AK+ RR S SP E Sbjct: 12 GEGIAYDQKKPVFVPGTFPGEVVEATISEKKAHYAHAKINRILQKAHYRRPSPSPIEEQL 71 Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV-IADVPWGYRRRARLSLNYL 138 P FG+ +Q +DL + A++ +H V ++ ++ + YR + +L + Sbjct: 72 GHPFFGIEYE-KQLTFKLDLLTEA-LWKYAKVKRHWVRKINPSENEFSYRNQCKLPIQ-- 127 Query: 139 PKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG----------SLQAMRH 188 + +L G S+ V P++E + ++ A L + Q +R+ Sbjct: 128 ERQGKLVCGLFSPNSNQFQVVHHFLTHDPEVERIRKELLAILNQHHFPAYSHKTKQGLRY 187 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE--- 245 + + + TL+ + T L+ + ++ H L + L+ GE Sbjct: 188 IVIRCIHGISQATLITGKDT--LNKCLIDDFKKIPHLHSLHQSWNTSKQSLQFF-GERTK 244 Query: 246 ---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 +P+ + + L SP F Q+N + + A+ +D P +++ +CG Sbjct: 245 LLFGKKHLLIPF---SSIYLHVSPEAFFQLNTKQAEALYHYAVSKVD--PCHILVEAYCG 299 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +G +L +++A V G+E P ++ ++NA LN L N F + + + K K Sbjct: 300 IGVMSLLASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIA-KKQK 358 Query: 357 FDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 D +L+DP R+G +++ I+K +P RI+Y+SCNPATLA++ A+LK Y I + D Sbjct: 359 IDTLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAKNI-AVLKWKYQILTIQAFD 417 Query: 416 MFPHTGHLESMVLFSRVK 433 +FP T H+E + L S+V+ Sbjct: 418 LFPQTPHVECLCLLSKVQ 435 >UniRef50_Q28WA9 (Uracil-5)-methyltransferase n=24 Tax=Rhodobacterales RepID=Q28WA9_JANSC Length = 419 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 127/428 (29%), Positives = 180/428 (42%), Gaps = 42/428 (9%) Query: 19 VSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 V++ L G G+A + G +F+P LP E + D+ A V+ SD R Sbjct: 12 VTITRLGHLGDGIATDDHGGPIFVPLTLPGEVVSGEIYGDR--IAAPSVITPSSD---RV 66 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALAR-LMKHDVSEVIADVPWGYRR-RARLSL 135 CPH+ CGGC HAS K + L HD+ + + R+ R R +L Sbjct: 67 KAPCPHYKSCGGCSLMHASDPFVATWKENVITTALQAHDLPTPLRPIVTSARKSRRRATL 126 Query: 136 NYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH--LGHVE 193 + +GF S IV + C +L P L LP + + L A R LG + Sbjct: 127 AGTRTKKGAMIGFHARKSGTIVPTRDCFLLEPALLETLPALERIV-KLGASRSATLG-LA 184 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG 253 L +G + + PL R L + S G+ P Y Sbjct: 185 LTLTDTGIDLHVTGAKPLDGPLRAALPQVRGS------------FSRLTWGDEPVYTETP 232 Query: 254 LRLTFS-------PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT 306 RLT P F+Q A + + +A Q + DLFCG+G FTLPLA Sbjct: 233 PRLTLGTARVTPPPGAFLQ--ATQDGEAALQAAVAEATQGATHIADLFCGIGTFTLPLA- 289 Query: 307 QAASVVGVEGVPALVEKGQQNARL-NGLQNVTFYHENLEEDVTKQPWAKN---GFDKVLL 362 QAA V VE P L++ R GL+ +T D+ ++P + FD +++ Sbjct: 290 QAAPVHAVEAAPDLLDALDHATRFATGLKPIT----TEARDLYRRPLLPDELAKFDAIVI 345 Query: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 DP RAGA +QI K I VSCNP T ARD+ L KAGY + + +D F + H Sbjct: 346 DPPRAGAEAQTEQIAKAHVPVIAAVSCNPVTFARDAAILTKAGYALDWVQPVDQFRWSPH 405 Query: 423 LESMVLFS 430 +E F+ Sbjct: 406 VELAARFT 413 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 578 e-163 UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=13... 525 e-148 UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81... 492 e-137 UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 ... 483 e-135 UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14... 471 e-131 UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36... 460 e-128 UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10... 455 e-126 UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolum... 455 e-126 UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=N... 449 e-125 UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethi... 447 e-124 UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clost... 439 e-122 UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marin... 438 e-121 UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 437 e-121 UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 436 e-121 UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 ... 435 e-120 UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 ... 434 e-120 UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1... 433 e-120 UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacil... 432 e-119 UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 432 e-119 UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammon... 429 e-119 UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chrom... 428 e-118 UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 428 e-118 UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veill... 428 e-118 UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n... 427 e-118 UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bact... 426 e-118 UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clost... 422 e-116 UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 421 e-116 UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 421 e-116 UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=2... 421 e-116 UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22... 420 e-116 UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19... 418 e-115 UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(... 418 e-115 UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 416 e-115 UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicu... 415 e-114 UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein ... 415 e-114 UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25... 414 e-114 UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Therm... 414 e-114 UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonel... 414 e-114 UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desul... 414 e-114 UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=... 414 e-114 UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase ... 413 e-114 UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 413 e-114 UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=... 413 e-114 UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geoba... 412 e-113 UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococ... 411 e-113 UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halot... 410 e-113 UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdema... 410 e-113 UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 ... 409 e-113 UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostri... 408 e-112 UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopisciu... 407 e-112 UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 406 e-112 UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacte... 405 e-111 UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58... 405 e-111 UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 403 e-111 UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=... 403 e-111 UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n... 403 e-111 UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natra... 403 e-111 UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 ... 402 e-110 UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 401 e-110 UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desul... 401 e-110 UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostri... 399 e-109 UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=... 399 e-109 UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moore... 399 e-109 UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=... 398 e-109 UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacil... 398 e-109 UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gamma... 398 e-109 UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachl... 397 e-109 UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=g... 397 e-109 UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus Rep... 397 e-109 UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 396 e-109 UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 396 e-109 UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenel... 396 e-109 UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desul... 396 e-108 UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12... 395 e-108 UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18... 395 e-108 UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 392 e-107 UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=B... 392 e-107 UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=... 391 e-107 UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 391 e-107 UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 T... 391 e-107 UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae Rep... 390 e-107 UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 389 e-107 UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingell... 388 e-106 UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntr... 388 e-106 UniRef50_A0LDR0 RNA methyltransferase, TrmA family n=1 Tax=Magne... 388 e-106 UniRef50_A1VQF1 23S rRNA (uracil-5-)-methyltransferase rumA n=8 ... 387 e-106 UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Therm... 386 e-106 UniRef50_B2UQE8 RNA methyltransferase, TrmA family n=4 Tax=Verru... 386 e-106 UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desul... 386 e-105 UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteri... 386 e-105 UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 385 e-105 UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protei... 385 e-105 UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotom... 385 e-105 UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 ... 384 e-105 UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter... 384 e-105 UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=1... 384 e-105 UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desul... 383 e-105 UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Ta... 383 e-104 UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzym... 382 e-104 UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comam... 382 e-104 UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 T... 382 e-104 UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candi... 381 e-104 UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 ... 381 e-104 UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine ... 381 e-104 UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyro... 381 e-104 UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 380 e-104 UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Vario... 380 e-104 UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 379 e-103 UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 ... 379 e-103 UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostri... 379 e-103 UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA ... 379 e-103 UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desul... 377 e-103 UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacte... 377 e-103 UniRef50_A3WPS3 SAM-dependent methyltransferase n=1 Tax=Idiomari... 376 e-103 UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 376 e-103 UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=... 375 e-102 UniRef50_B6BUM1 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=B... 374 e-102 UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desul... 373 e-102 UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacil... 373 e-102 UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodo... 373 e-102 UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 373 e-101 UniRef50_C8NCJ6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 371 e-101 UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spiro... 370 e-101 UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicy... 370 e-101 UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptoco... 369 e-101 UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevot... 369 e-101 UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 369 e-100 UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1... 368 e-100 UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 368 e-100 UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 368 e-100 UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=... 368 e-100 UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Therm... 367 e-100 UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bactero... 366 e-100 UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdema... 366 e-100 UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 366 e-100 UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 365 1e-99 UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillac... 365 2e-99 UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfo... 364 2e-99 UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1... 364 3e-99 UniRef50_Q1QX18 RNA methyltransferase, TrmA family n=1 Tax=Chrom... 363 6e-99 UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desul... 363 8e-99 UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 363 8e-99 UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 363 1e-98 UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n... 362 1e-98 UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacte... 362 2e-98 UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synec... 361 3e-98 UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=... 361 3e-98 UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protei... 361 4e-98 UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 ... 360 7e-98 UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 359 1e-97 UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA ... 359 1e-97 UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsoni... 359 2e-97 UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=D... 358 2e-97 UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=... 358 2e-97 UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclass... 358 3e-97 UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA ... 356 1e-96 UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collins... 355 2e-96 UniRef50_A4BBK4 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=R... 355 2e-96 UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpe... 354 3e-96 UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Rosebur... 354 3e-96 UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacte... 354 3e-96 UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1... 353 6e-96 UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=De... 350 5e-95 UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 350 5e-95 UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitu... 350 5e-95 UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n... 350 5e-95 UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdema... 350 6e-95 UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embr... 349 1e-94 UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 349 1e-94 UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 349 1e-94 UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 349 2e-94 UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=unculture... 348 2e-94 UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2... 348 2e-94 UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bact... 348 3e-94 UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=... 347 4e-94 UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=1... 346 7e-94 UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Corio... 346 7e-94 UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petro... 346 9e-94 UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=... 346 1e-93 UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Achol... 345 2e-93 UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase Ru... 344 3e-93 UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Rosei... 344 3e-93 UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=S... 344 4e-93 UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 T... 343 7e-93 UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=P... 342 1e-92 UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=... 342 1e-92 UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chlor... 342 1e-92 UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmo... 342 2e-92 UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firm... 340 6e-92 UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 T... 339 9e-92 UniRef50_C1F225 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=A... 338 3e-91 UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clost... 337 6e-91 UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydro... 337 7e-91 UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Enta... 336 8e-91 UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcu... 336 9e-91 UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desul... 336 1e-90 UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacte... 335 2e-90 UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzym... 335 2e-90 UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopo... 334 3e-90 UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna R... 334 3e-90 UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusob... 333 6e-90 UniRef50_Q1D5V4 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 332 1e-89 UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachl... 332 1e-89 UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 332 2e-89 UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimo... 332 2e-89 UniRef50_UPI0000E0E6C1 23S rRNA (uracil-5)-methyltransferase, re... 331 4e-89 UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1... 331 5e-89 UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus ... 330 5e-89 UniRef50_B8C918 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 330 6e-89 UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protei... 330 8e-89 UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaer... 329 1e-88 UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinel... 328 2e-88 UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4R... 328 2e-88 UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzym... 328 2e-88 UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 ... 327 4e-88 UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna R... 323 6e-87 UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepI... 322 2e-86 UniRef50_Q09833 Uncharacterized RNA methyltransferase C4G8.07c n... 321 2e-86 UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavo... 321 3e-86 UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=... 321 3e-86 UniRef50_A6GQJ2 23S rRNA (Uracil-5-)-methyltransferase (Fragment... 321 3e-86 UniRef50_Q4PA00 Putative uncharacterized protein n=1 Tax=Ustilag... 320 6e-86 UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCM... 320 8e-86 UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Achol... 319 1e-85 UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycop... 319 1e-85 UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n... 318 2e-85 UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 316 8e-85 UniRef50_C6WAK7 Deoxyribonuclease/rho motif-related TRAM n=1 Tax... 315 2e-84 UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostri... 315 2e-84 UniRef50_Q6MGU3 Uncharacterized RNA methyltransferase Bd3828 n=1... 315 2e-84 UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6... 314 3e-84 UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaer... 313 1e-83 UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteri... 312 1e-83 UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusob... 312 2e-83 UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacte... 312 2e-83 UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5E... 312 2e-83 UniRef50_B9R3Z1 tRNA (Uracil-5-)-methyltransferase superfamily n... 311 3e-83 UniRef50_A6G9S9 RNA methyltransferase n=1 Tax=Plesiocystis pacif... 311 4e-83 UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacte... 311 5e-83 UniRef50_B9XDW9 RNA methyltransferase, TrmA family n=1 Tax=bacte... 310 5e-83 UniRef50_O54099 Uncharacterized RNA methyltransferase SCO5901 n=... 309 2e-82 UniRef50_C2EN78 TrmA family tRNA (Uracil-5-)-methyltransferase n... 308 3e-82 UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1... 307 4e-82 UniRef50_A6DJC1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lenti... 307 6e-82 UniRef50_C5PD16 tRNA-methyltransferase family protein n=2 Tax=Co... 307 7e-82 UniRef50_Q8UHE7 Uncharacterized RNA methyltransferase Atu0735 n=... 306 1e-81 UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780... 306 1e-81 UniRef50_A4FAQ4 23S rRNA methyltransferase/RumA n=2 Tax=Actinomy... 305 3e-81 UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 302 1e-80 UniRef50_D2BIA5 RNA methyltransferase, TrmA family n=5 Tax=Dehal... 302 1e-80 Sequences not found previously or not previously below threshold: >UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Enterobacteriaceae RepID=RUMA_ENTS8 Length = 432 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 326/431 (75%), Positives = 369/431 (85%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MAQFYSAKRR TTR+IITV+ + LD+FGQGVARH+GK LFI GLLP E AEV ++EDKKQ Sbjct: 1 MAQFYSAKRRVTTREIITVTTDGLDAFGQGVARHHGKALFIAGLLPGERAEVVLSEDKKQ 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI 120 +AR V +RLS+SPERETPRCPHFGVCGGCQQQHASV LQQRSK+ AL R+MK +V EVI Sbjct: 61 FARGDVKKRLSESPERETPRCPHFGVCGGCQQQHASVALQQRSKAQALCRMMKREVDEVI 120 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + WGYRRRARLSLN+ P+ LQMGFRKAGS+D+VDV +CP+L P+LEALLPK+R CL Sbjct: 121 SGPAWGYRRRARLSLNFTPRKPGLQMGFRKAGSNDLVDVHRCPVLVPRLEALLPKLRDCL 180 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 SL +RHLGHVELV TSG LM+LRH PLS+ADREKLE FSHSEG+ LYLAP S+ LE Sbjct: 181 SSLDGVRHLGHVELVDVTSGPLMVLRHLKPLSAADREKLECFSHSEGVALYLAPQSDTLE 240 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 ++GEMPWY+S+GLRLTFSPRDFIQVN VNQ+MVARALEWL++QP +RVLDLFCGMGNF Sbjct: 241 HLNGEMPWYESDGLRLTFSPRDFIQVNDAVNQQMVARALEWLEIQPGERVLDLFCGMGNF 300 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 TLPLA +A SVVGVEGV ALVEKG NA LN L+NVTF+ NLEEDVT+QPWA+ GFDKV Sbjct: 301 TLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQPWAQQGFDKV 360 Query: 361 LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 LLDPARAGAAGVMQ I+KL+P R+VYVSCNPATL RDSE LL AGY RLAMLDMFPHT Sbjct: 361 LLDPARAGAAGVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHT 420 Query: 421 GHLESMVLFSR 431 GHLESM LF R Sbjct: 421 GHLESMALFER 431 >UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=131 Tax=Enterobacteriaceae RepID=RUMA_PECCP Length = 449 Score = 525 bits (1354), Expect = e-148, Method: Composition-based stats. Identities = 274/440 (62%), Positives = 337/440 (76%), Gaps = 11/440 (2%) Query: 1 MAQFYSAKRRTTTRQII-----TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVT 55 MAQFYS RR TTR+ I TV+V LD FGQGVARH GKT+F+ G+LP E AEV +T Sbjct: 1 MAQFYSPNRRVTTRKAIPAKNLTVTVTSLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLT 60 Query: 56 EDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD 115 EDK+Q++ AK+ R L+ SP+R P+CPHF CGGCQQQHA + LQQ SK+AAL RLM + Sbjct: 61 EDKRQFSHAKLKRLLTHSPQRVEPQCPHFTRCGGCQQQHADITLQQSSKTAALMRLMTRE 120 Query: 116 VSE------VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQL 169 +IA P+ YRRRARL+L + K Q+L MG+R++ S D+VD+K CP+L P+L Sbjct: 121 TGAELPDASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPEL 180 Query: 170 EALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD 229 EALL +R CL L+A++ LGHVELVQA +G L++LRH PL AD + L F+ +G+ Sbjct: 181 EALLQPLRDCLSRLKAVKRLGHVELVQAENGPLLVLRHLDPLHPADEQALRDFAEQQGVS 240 Query: 230 LYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 +YLAPD++ L + G+ P Y GL L FSPRDFIQVN VNQ+MVA+AL WLDVQP+DR Sbjct: 241 VYLAPDADSLTCLHGDEPVYLVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDR 300 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 +LDLFCGMGNFTLPLA +AASVVGVEGV ALVEKG++NAR N L NVTF+H+NLE+DVT+ Sbjct: 301 ILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQ 360 Query: 350 QPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 QPW GFDK+LLDPARAGAAGVM+QI +L P R+VYVSCN TLARDS+ LL AG+T+ Sbjct: 361 QPWVAQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLV 420 Query: 410 RLAMLDMFPHTGHLESMVLF 429 +AMLDMFPHTGHLESM LF Sbjct: 421 NVAMLDMFPHTGHLESMALF 440 >UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81 Tax=Gammaproteobacteria RepID=RUMA_VIBSL Length = 442 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 215/443 (48%), Positives = 279/443 (62%), Gaps = 14/443 (3%) Query: 1 MAQFYSAKRRT---TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTED 57 MA+F+ K++T T Q + V +D G G+A K +FI G LP E + +TE Sbjct: 1 MARFFQPKKKTQLETKHQSVLV--ERMDHNGAGIAYQKNKPVFIDGALPGEKVVIQLTES 58 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--- 114 K +++RAK+++ L S R P C HF CGGC QH Q KS +L LM Sbjct: 59 KSKFSRAKLIKLLQPSELRLKPFCKHFNQCGGCHLQHLGYSSQVEHKSQSLTHLMSKYQT 118 Query: 115 ---DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 +V+ I GYRRRAR+SL KTQ LQ GFRK S I ++ C +L P+L Sbjct: 119 ANTEVALPIVGDESGYRRRARISLFVDKKTQLLQFGFRKKQSKQIENITDCAVLDPRLNV 178 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERF---SHSEGL 228 LLPK+++ L + ++ LGHVELV +G +M+LRH PL D + L + EG Sbjct: 179 LLPKLKSLLNTFSSLTSLGHVELVLGDTGPVMVLRHLKPLVEKDEQALMTLMTLAKEEGA 238 Query: 229 DLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 LY P+++ L + G+ P Y G+ L F P FIQVN VNQ+MVA+A+EWL+ Q ++ Sbjct: 239 TLYSMPETDKLVRLVGDAPSYSETGVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADE 298 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 RVLDLFCG+GNF+LP+A Q+A VVGVEGV +V++ NA LN L N FY NLEED++ Sbjct: 299 RVLDLFCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLS 358 Query: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 Q WAK FDKVLLDPARAGA+G++ QI L R+VYVSCNPATLARDSE+L K GY + Sbjct: 359 SQLWAKEKFDKVLLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQL 418 Query: 409 ARLAMLDMFPHTGHLESMVLFSR 431 A+L MLDMFPHT HLESM LF + Sbjct: 419 AKLGMLDMFPHTSHLESMALFIK 441 >UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 Tax=Shewanella RepID=RUMA_SHEPA Length = 445 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 199/443 (44%), Positives = 283/443 (63%), Gaps = 14/443 (3%) Query: 1 MAQFYSAKRRTTTR--QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58 MAQF+ AK + + +++ V LD G G+A H+GK +FI G LP E V +TE K Sbjct: 1 MAQFFKAKPNRSKQLSSKLSLKVTQLDHLGAGIAHHDGKIVFINGALPDETVSVQLTEQK 60 Query: 59 KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---- 114 K+++R K+++ S ER TP CPHF CGGC QH ++ Q++ K+ L L+ Sbjct: 61 KKFSRGKLLKIEKRSTERVTPPCPHFDKCGGCDLQHLDIEAQRKHKANTLVDLVNKFAQT 120 Query: 115 ---DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 +V ++ W YRRRARL+ + T+ + +GFR + SSD+V+++ C +LA L A Sbjct: 121 QASEVCAPLSGDAWHYRRRARLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSA 180 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L+P + L L + LGHVEL QA +G ++LR T LS D+ +L F++ + + Sbjct: 181 LIPDLAFMLNQLSGKKALGHVELTQADNGNFVVLRVTKVLSDKDKARLVEFANKHEVIVL 240 Query: 232 LAPDSEILETVS--GEMPWYDSNG--LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 L D E ++ GE P+Y +G ++L FSP +FIQVN VNQ MV++A+EWL + Sbjct: 241 LQDDDAQCEHLNGAGEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAG 300 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 +RVLDLFCG+GNF+LPLA A V+GVEGV A+VE+ + NA+ +GL V FYH +L D+ Sbjct: 301 ERVLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLSADL 360 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 +K+PW DK+L+DPARAGA MQ + KL+P +VYVSCNPA+LARDSE +LK GY Sbjct: 361 SKEPWLG-KVDKMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQ 419 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 + ++ ++DMFP T HLESM LF Sbjct: 420 LKKIGLIDMFPQTHHLESMALFE 442 >UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14 Tax=Shewanella RepID=RUMA_SHEDO Length = 468 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 199/466 (42%), Positives = 278/466 (59%), Gaps = 37/466 (7%) Query: 1 MAQFYSAKRRTTTR--QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58 MAQF+ K + + ++++V LD G G+A+H GK +FIP LP E V +T+ K Sbjct: 1 MAQFFKEKANKSKQLSPKLSLNVTQLDHLGAGMAQHQGKVVFIPQALPGERVSVQLTDQK 60 Query: 59 KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-KHDVS 117 K +A+AK+++ SPER CPH+G CGGC QH ++D QQ K +L LM K S Sbjct: 61 KSFAKAKLIKIEQQSPERADASCPHYGHCGGCDLQHLALDAQQNHKQQSLNELMVKFSGS 120 Query: 118 EVIAD---------VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQ 168 VI PW YRRRARL+ + + L++GFR S IV +KQCP+LA Sbjct: 121 PVIDPQVQAAPLVSPPWHYRRRARLATYFNNNDKSLKLGFRALSSKQIVPIKQCPVLAEP 180 Query: 169 LEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL 228 L AL+ L L+A LGH+EL QA +GT +LR T L +AD L F+ ++G+ Sbjct: 181 LSALINPFSLLLARLKAKASLGHLELTQADNGTFAVLRVTKVLPAADIRALASFALTQGI 240 Query: 229 DLYLAPDSEILETVSGEMPWYDSNGLRLT-------------------FSPRDFIQVNAG 269 +L L DS L V P D ++ F+P +F+QVNA Sbjct: 241 NLLLQDDSGALTDVMTMAPAEDEGATQVEQSALTLPEYALSQGQVSCQFTPGNFVQVNAE 300 Query: 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA-----SVVGVEGVPALVEKG 324 VNQ+MV +A+ WLD+Q +RVLDLFCG+GNF+L LA + V+GVEGVP +V++ Sbjct: 301 VNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQA 360 Query: 325 QQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRI 384 ++NA+ N L N++FYH +L D++ + W DK+LLDPARAGA +Q + K++P ++ Sbjct: 361 RENAKRNNLANLSFYHADLSADLSNEKWLG-KIDKLLLDPARAGAFESLQWLQKMKPKKV 419 Query: 385 VYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 VYVSCNPA+LARDS LL GY + +L+M+DMFP T H+E+M LF Sbjct: 420 VYVSCNPASLARDSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALFE 465 >UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36 Tax=Bacteria RepID=RUMA_MANSM Length = 440 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 192/439 (43%), Positives = 279/439 (63%), Gaps = 9/439 (2%) Query: 1 MAQFYSAKRRTTTRQ-IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59 M Y+ ++ Q + V + DLD G GVA+ GKT F+ LP E + + E+K+ Sbjct: 1 MVLLYTPPQKINKLQREMEVEILDLDYQGLGVAKIQGKTWFVENALPGEKVRIKIKEEKR 60 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-ARLMKHDVS- 117 Q+ A + L S +R+TP+C + CGGCQ QH V++Q+ +K AL RL+K Sbjct: 61 QFGLATTKKILEASAQRQTPKCQYASRCGGCQNQHIPVEMQREAKQKALFRRLLKLQPEG 120 Query: 118 ----EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 +I +GYRRR RLS+ + K ++L++GFR+ S+ IV ++QC ++ P L +L Sbjct: 121 IEFMPMIVGEAFGYRRRVRLSMLFDGKLKRLEIGFRQKNSAQIVHIEQCEVIEPALNKIL 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 K+ A L ++LGH+ELV A +G M+LR++ L+ DR L F+ E L L+L Sbjct: 181 SKLTALLSRFSQPKNLGHIELVAADNGVAMLLRYSGKLTENDRTLLLDFAVREELMLFLQ 240 Query: 234 PDSEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 D E E + G+ P+Y ++ L+L F RDFIQVN+ +NQ+M+ AL+WLDVQ +D VLD Sbjct: 241 -DDEKTEQIYGQPPFYQLADNLQLQFDIRDFIQVNSLLNQRMITAALDWLDVQKQDHVLD 299 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 LFCGMGNFTLPL+ + S VG+EG+ A+VEK + NA N QNV FY +L+++ + W Sbjct: 300 LFCGMGNFTLPLSRRVKSAVGIEGISAMVEKAKANAERNQCQNVQFYRADLDQNFADEVW 359 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 A F+K+LLDP R GAA + + +L+ +I+YVSCNPATL RD+E LL + Y + ++A Sbjct: 360 ATEPFNKILLDPPRTGAAFALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVA 419 Query: 413 MLDMFPHTGHLESMVLFSR 431 M+DMFPHTGHLES+ LF + Sbjct: 420 MIDMFPHTGHLESITLFEK 438 >UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10 Tax=Gammaproteobacteria RepID=RUMA_MARAV Length = 449 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 171/444 (38%), Positives = 248/444 (55%), Gaps = 18/444 (4%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 +R+ ++ + + L G+G+AR +GKT F+ G LP E + + ++ + Sbjct: 3 KRRRKVLPKEPVRCEIETLSHDGRGIARADGKTQFVDGALPGETVMAKMVRTRSRFDELR 62 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--------VS 117 L +P+R+ P C +CGGC QH S D Q R K L H V+ Sbjct: 63 TTEVLEAAPDRQQPPCEFADLCGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVA 122 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + + GYRR+ARL + Y+ + + +GFR+ +S + D+ +C +L P++ + +R Sbjct: 123 PMRSPDSLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLR 182 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS- 236 L + A + VE+ M+ R+ L DREKL F + L +YL P Sbjct: 183 ELLHGMAAFDRIAQVEVACGDDTAAMVFRNMDDLVPDDREKLIAFGQAHDLHIYLQPKGP 242 Query: 237 EILETVSGE---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + + + E D L + F P DF QVNAG+N+ MV RA+EWLDVQP Sbjct: 243 DTVHRIWPESGGRDDERLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQPG 302 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 +RVLDLFCG+GNFTLPLA + VVGVEG A+V +G++NARLN L NV F+ +L D Sbjct: 303 ERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADLHGDF 362 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 T Q WAK GFDK+L+DP R+GA + + + RIVYVSCNPATLARD+ +++ GY Sbjct: 363 TGQSWAKEGFDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYR 422 Query: 408 IARLAMLDMFPHTGHLESMVLFSR 431 + + ++DMFPHT H+ES+ LF R Sbjct: 423 LVQAGVMDMFPHTTHVESIALFER 446 >UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBR5_TOLAT Length = 440 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 177/440 (40%), Positives = 245/440 (55%), Gaps = 10/440 (2%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M QF+ K + Q + +++++LD GV R+ GK F+ G+LP E V +TE KKQ Sbjct: 1 MVQFFQPKPKALPTQAVEITIDNLDHHLTGVGRYQGKACFVEGVLPGEKVSVQITEQKKQ 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM----KHDV 116 YA A++ + + S +R P CP F CGGC Q +Q ++K + RL K D+ Sbjct: 61 YAHARLRQVIEPSADRCEPFCPAFKQCGGCNAQMMPQAMQCQAKQQGVQRLFRQLAKIDL 120 Query: 117 SEVI---ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + + P YRR RL++ Y + + +GFR+ S +V++ CP+L L AL+ Sbjct: 121 PAPLWIESSAPQAYRRVCRLAVKYDKNKRCVLVGFRQKQSQALVEINSCPVLTAALSALI 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 +R + L + R +GH+EL + SG M+LRH D+E L F+ LYL Sbjct: 181 VPLRTLINELSSARDVGHIELYETESGLAMLLRHNGRPPVKDKELLLAFALQHDCALYLQ 240 Query: 234 PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 + +Y +GLRL F P DF+QVN VNQ++V EWL D VLDL Sbjct: 241 TTGYPEPLADVKPSFYQLDGLRLYFQPGDFLQVNPQVNQRLVNYVREWLAPTATDNVLDL 300 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV--TKQP 351 FCG+GNFTLPLA +AASV G+EGV +V++ NA N L N F+ +L + Sbjct: 301 FCGIGNFTLPLAREAASVTGIEGVDEMVQRATHNAEQNQLVNTGFHRADLTKMAEYANAG 360 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 W + +D VLLDP R GA VM + K RIVYVSCNP T ARD LL+ GYT+ + Sbjct: 361 WQQQCYDLVLLDPGRTGAEAVMPWLAKSGARRIVYVSCNPVTAARDCA-LLQPGYTLKQW 419 Query: 412 AMLDMFPHTGHLESMVLFSR 431 +LDMFPHTGH+ES+ LF R Sbjct: 420 GLLDMFPHTGHVESLFLFER 439 >UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHH5_9GAMM Length = 449 Score = 449 bits (1156), Expect = e-125, Method: Composition-based stats. Identities = 161/435 (37%), Positives = 245/435 (56%), Gaps = 9/435 (2%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 S K + + T+ + L +G+A+HNGKT+F+ G L E +++ +++ A+ Sbjct: 15 SPKSKASMDYPETLEIIGLSHEARGIAKHNGKTIFVTGALTGETVRYEISKKHRRFDEAE 74 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVS---E 118 V ++ SP R P C ++G CGGC QH Q ++K L RL K + Sbjct: 75 CVEVITPSPNRVEPFCQYYGQCGGCDLQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTP 134 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 ++ YRR R+ +N L + +GFR+ GSS ++ V CPIL + +L K++A Sbjct: 135 PLSGSDQEYRRSCRIGINQLMRDGTPIIGFRRRGSSKLLQVDNCPILINPINKILGKLKA 194 Query: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI 238 L + + + H EL M LR PL + L++ + LY +I Sbjct: 195 VLSEADSCKEITHAELSMGDQQGAMTLRIKKPLPESLSSSLQKLAEDNEFRLYFDNGQQI 254 Query: 239 LETVSGEMPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 Y + + ++ F P DFIQVNA VN +M+ RA++WLD++ DRVLDLF G Sbjct: 255 NAFGDEADLSYQLEKSETQIGFKPGDFIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSG 314 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +GNF+LPLAT+A SV+GVEGV +V++ Q NA+ GL N FY +L +D+ PW K G Sbjct: 315 VGNFSLPLATKAGSVIGVEGVEDMVQRAQNNAKQAGLNNCEFYRADLSKDLKALPWYKQG 374 Query: 357 FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 F K+L+DP R GA V++Q+ + + +I+YVSCNP+ LARD L++ GY ++ ++DM Sbjct: 375 FSKILIDPPRTGALEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDM 434 Query: 417 FPHTGHLESMVLFSR 431 FPHT H+ES+VLF + Sbjct: 435 FPHTSHVESLVLFEK 449 >UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCA6_9FIRM Length = 455 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 137/455 (30%), Positives = 213/455 (46%), Gaps = 31/455 (6%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 K Q + + ++ L+ G+GV R+ G T+F+P +P + V +K YARA Sbjct: 2 KKKPPVKKGQQVELEIHSLNHDGEGVGRYQGFTIFVPDAVPGDTVNAKVISVQKSYARAL 61 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVI- 120 + ++ SP R P C H CGGCQ QH + Q + K L R+ D+ + Sbjct: 62 LQSVITSSPTRIAPSCEHAAQCGGCQLQHLQYEEQLKLKQNIVSDTLKRIGGIDIPVLAT 121 Query: 121 --ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 PW YR +A++ + + ++ GF + S +I+D+K C I P + ++ VR Sbjct: 122 MGMQDPWRYRNKAQVPVGL--ENGTVRAGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRN 179 Query: 179 CLGS-----LQAMRHLGHVELVQATS-----GTLMILRHTAPLSSADREKLERFSHS--E 226 L + H G V + A + L+ + +E +++ S Sbjct: 180 ILQQLSVPVYREREHKGLVRHILARTSFTTEEVLVAIVTNGRQLPKKQEVVQQLKDSIPN 239 Query: 227 GLDLYLAPDSEILETVSGE-------MPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 + ++ T+ G PW L S R F QVN + + + Sbjct: 240 LCGIVQNINTRKGNTILGNEELTLLGRPWLREKLGNLHFHVSARSFFQVNPLQTEVLYNK 299 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 ALE+ ++ + V DL+CG+G +L LA +AA VVGVE V A V ++NA +N ++N Sbjct: 300 ALEYANLSGTETVFDLYCGIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAE 359 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLAR 396 F+ E V + D V++DP R G ++ I + P RIVYVSCNPATLAR Sbjct: 360 FHTGTAETVVPRLFKQGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLAR 419 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 D + L + GY +DMFPHT H+E++VL R Sbjct: 420 DLKYLQQNGYNPIEAQPVDMFPHTSHVETVVLLER 454 >UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clostridiales RepID=D2RLZ0_ACIFE Length = 458 Score = 439 bits (1130), Expect = e-122, Method: Composition-based stats. Identities = 136/458 (29%), Positives = 227/458 (49%), Gaps = 37/458 (8%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 K ++ I +++ L S G+GV + +G T F+PG LP E + VT KK Y +A+ Sbjct: 3 ENKIPFKLKENIELTITGLGSSGEGVGKVSGFTFFVPGALPGERIQAQVTLLKKSYGQAR 62 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHDVSE 118 +++ L SP+R P CP + CGGCQ QH S Q K + M K V E Sbjct: 63 LLKLLVPSPDRVKPPCPVYAQCGGCQLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQE 122 Query: 119 VI-ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + A+ PW YR + ++ + L +G G+ ++DVK C I ++ VR Sbjct: 123 TLGAEDPWHYRNKMQVPAA-QGRNHTLAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVR 181 Query: 178 ACLGSLQAMR-----HLGHVELVQAT----SGTLMILR--------HTAPLSSADREKLE 220 + + + G V + +G +M + H L++ R+++ Sbjct: 182 SWMEKYRIPALEEDARRGIVRHIMGRVGVQTGEVMAVLVTNEPQVPHLKDLTALLRQEIP 241 Query: 221 RFS------HSEGLDLYLAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQK 273 F+ ++ ++ + P +++ + G +D G T SP F QVN +K Sbjct: 242 GFTTLVQNLNTRHTNVIMGPKNKV---IWGPGVIHDRLGKFTFTISPHSFFQVNTLQAEK 298 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + AL++ + +++V+D +CG G TL LA +A +G+E V + +QNAR N + Sbjct: 299 LYETALQYAALTGKEKVIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQV 358 Query: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPA 392 NV F + +++ + + D V+LDP RAG V++ I K+ P R+VYVSCNPA Sbjct: 359 SNVDFLCGDAAKEMPELVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPA 418 Query: 393 TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 +LARD+ L G+ + ++ +DMFPHT H+E++ L + Sbjct: 419 SLARDAAILRDKGFVVRKVQPVDMFPHTSHVETVCLLT 456 >UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marinomonas RepID=A6VUQ2_MARMS Length = 440 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 169/430 (39%), Positives = 250/430 (58%), Gaps = 8/430 (1%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 + I T V+ L +GVAR GK FI G LP E E V + +++ A +V Sbjct: 14 KPQPIGPIQTFEVDGLTHEAKGVARLQGKVTFIEGALPGETVEAQVNKAGRRFDEAVLVN 73 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADVP 124 + S R P C HF +CGGC QH + + Q +K+ L L+ E ++D P Sbjct: 74 IIEPSVYRVEPSCQHFNLCGGCSFQHLANEQQLSAKADWLQGQLRNLITTQELETLSDTP 133 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 GYRRRARL+++ K ++ +GFR S +I+ + QC +L P L++ ++ L Sbjct: 134 TGYRRRARLAIDI--KKGRMVLGFRGKASKEIISIDQCVVLTPNLQSTFLLLKLKLLEND 191 Query: 185 AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA-PDSEILETVS 243 LGHVEL++ T G + R T+P+S + E ++ + LY P E Sbjct: 192 LAGVLGHVELLEDTKGVSALFRLTSPISDELKNAWEDWAEKGRVALYWQAPKVGKAEVAL 251 Query: 244 GEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 +M +YD LRL + P+DFIQVNA +NQKMV +A++WL+ +D +LDLFCG+GNF+LP Sbjct: 252 EKMRYYDLGDLRLKYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDVILDLFCGVGNFSLP 311 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA A +V+GVE +VE ++NAR+NG N++F +L + V + + K KVLLD Sbjct: 312 LAVHAQAVIGVEVQETMVEAARENARVNGFDNLSFVAADLTKPVNNELF-KQTITKVLLD 370 Query: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 P RAGA + IIK+ P +I+YVSCN +TLARD+E L+ GY + R++++DMFP T H+ Sbjct: 371 PPRAGAFEFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLMDMFPQTSHV 430 Query: 424 ESMVLFSRVK 433 E+M+L + K Sbjct: 431 ETMMLLQKKK 440 >UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Methylococcus capsulatus RepID=RUMA_METCA Length = 443 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 161/444 (36%), Positives = 242/444 (54%), Gaps = 20/444 (4%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 + KR+ + I + G+G+A +G+ +F+ G LP E+ TE K+ YA Sbjct: 3 HRGKRKPLPAEPIAAHIESFAHDGKGIAHVDGRVVFVDGALPGEDVTFVYTEIKRDYAAG 62 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHDVS--- 117 +VV ++ SP+R RC HF +CGGC Q+ S D Q K L R+ K + + Sbjct: 63 RVVEIVTASPDRVPARCRHFALCGGCSLQYLSEDAQIALKEDLLLDQFRRIGKVEPAAQF 122 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + WGYR RARL Y+ K + +GFR+ S+ IVD+ CP+L P L + Sbjct: 123 PPLRGPHWGYRSRARLGARYVAKKGRELVGFREHASAKIVDMTDCPVLHPALGERIQAFA 182 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS- 236 + L L +E T ++ R ++ D +L RF +GLD+Y+ + Sbjct: 183 ELIEGLSLRERLPQIEAAVGEERTALVFRVLEDPTAEDFARLARFGKDQGLDVYIQREGR 242 Query: 237 --------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 E +S +P ++ + F P DF QVN +N++M+ + ++ LD QPE+ Sbjct: 243 DSVAPVYPETAHDLSYSLPEWE---VTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEE 299 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 RVLDLFCG+GNFTLPLA +A V GVEG V + +NA NG+ NV F+ +L + + Sbjct: 300 RVLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPES 359 Query: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYT 407 WA + KVLLDP+R+GA ++Q + + RIVYVSCNP+TLARD+ L+ + GY Sbjct: 360 CGSWAGREYHKVLLDPSRSGALEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGYR 419 Query: 408 IARLAMLDMFPHTGHLESMVLFSR 431 + + ++DMFPHT H+ES+ +F R Sbjct: 420 LLKAGVMDMFPHTAHVESIAVFER 443 >UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Rickettsiella grylli RepID=A8PP31_9COXI Length = 443 Score = 436 bits (1122), Expect = e-121, Method: Composition-based stats. Identities = 160/438 (36%), Positives = 243/438 (55%), Gaps = 16/438 (3%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 ++ + ++ + + + G+G+A NGK FI LP E + T+ ++ Y A+ + Sbjct: 5 KKYSYKETTPIFITGISHEGRGIAHINGKITFIENALPGERVSIVYTKKRRAYDEARATQ 64 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIA 121 L+ S +R P+CPHF CGGC QH + Q + K L + H + + Sbjct: 65 ILNASTDRIQPQCPHFNQCGGCNLQHLNHQAQLQHKEKILVNQLTHVAKTKPTSLLAPVM 124 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 WGYRRRARL + Y+ K Q + +GFR+ + ++ C L +++ LL ++ + Sbjct: 125 ATGWGYRRRARLGVKYVAKKQAVLVGFREKNGHYLAQIQTCKTLDFRVDRLLIPLQQLIQ 184 Query: 182 SLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEIL-E 240 SL A + +E+ ++ RH PL+++D L+ F+ + LYL P +E Sbjct: 185 SLNAFHDIPQIEVALGDEILGLVFRHLVPLNNSDVLALKNFAKKYSVQLYLQPGNEKTTH 244 Query: 241 TVSGEMPWY--------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 + E P L F P FIQ+NA +NQ M+ A+E L DR+LD Sbjct: 245 CIWPENPQLLSYRLQNKAHRSLEFFFEPHHFIQINATINQAMIQHAIELLSPHFSDRILD 304 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 LFCG+GNF+LPLA + SVVG+EG ALVE+ + NAR N + N FY +L + K+ W Sbjct: 305 LFCGLGNFSLPLALRCQSVVGIEGHSALVEQAKINARHNAINNTQFYTADLTGSILKEVW 364 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 A+ F+K+LLDP R+GA V+QQI + + ++VY+SCNPATLARDSE L+K GY + R Sbjct: 365 AQQTFNKILLDPPRSGALEVIQQIARWKVEKMVYISCNPATLARDSEELIKQGYHLERAG 424 Query: 413 MLDMFPHTGHLESMVLFS 430 ++DMFP T H E++ LF+ Sbjct: 425 IMDMFPQTHHSEAICLFT 442 >UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 Tax=Psychromonas RepID=RUMA_PSYIN Length = 444 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 191/443 (43%), Positives = 270/443 (60%), Gaps = 13/443 (2%) Query: 1 MAQFYSAKRRTTTRQII--TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58 MAQF+ A + + I + V LD G+G+A K LFI G L E EV + E K Sbjct: 1 MAQFFKAAPTNSIKNHILKNIKVEKLDHRGRGLAYFQNKPLFIDGALAGELLEVQIVESK 60 Query: 59 KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE 118 K+Y++ K+ + + S R T CPH+ CGGC QH + Q + KS L L + + Sbjct: 61 KRYSKGKIKKIIKASELRITAACPHYQECGGCDLQHLNQAAQIQIKSDGLLSLFQRFAKK 120 Query: 119 V-------IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 V I D W YRR AR L + K +QL+MG R+A S++++D K CP+L P+LE Sbjct: 121 VPQQLEKPIIDKAWEYRRTARFGLQFDKKNKQLKMGLRRAQSNELIDQKVCPVLLPELEC 180 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L+P ++ L SLQ HLGHVEL+ A G +++LRH L+S D + + FS + ++ + Sbjct: 181 LIPPLKILLNSLQCKAHLGHVELLYADQGAVVLLRHMKTLTSPDLQLITAFSALQKVNFF 240 Query: 232 LAPDSEILETVSGE---MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 S ++GE L+F+P DF+QVN+ +N+KMV++A++WL ++ D Sbjct: 241 GQASSNQSVCLAGEANLSYRLPEWDCSLSFTPTDFLQVNSDINKKMVSQAMQWLALEKND 300 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE-EDV 347 VLDLFCG+GNFTLP+A Q SVVG+EGV +V++ NA+LN LQN FY +L E++ Sbjct: 301 SVLDLFCGLGNFTLPIARQVESVVGIEGVQQMVDRATANAQLNNLQNARFYQADLSGENL 360 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 +Q WA F+KVLLDPARAGA + I + +P I+YVSC+P TLARDS+ LL GY Sbjct: 361 IEQEWANQNFNKVLLDPARAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYK 420 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 + +L +LDMFP T H+ESM LF+ Sbjct: 421 LDKLGLLDMFPQTAHMESMALFT 443 >UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 Tax=Legionella RepID=RUMA_LEGPL Length = 444 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 159/445 (35%), Positives = 248/445 (55%), Gaps = 25/445 (5%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 K T++ T + +L G+G+AR NGK FI G LP E E T KK + K Sbjct: 5 KPKLNLTSQ---TARIVNLSHDGRGIARINGKATFIQGALPGEVVEFQYTRVKKDFDEGK 61 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSE 118 ++ + S R P+CPH+ +CGGC QH S + Q R K + L L+ V Sbjct: 62 LLSIVEPSTLRVEPKCPHYQMCGGCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLS 121 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVR 177 + PW YR +ARLS ++ K Q +GFR+ + I ++ QCPIL +++ + +R Sbjct: 122 PLTSHPWNYRNKARLSTRFVEKKQSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLR 181 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD-- 235 + +++ + + +E+ + +I R+ PL+ D K+ +F+ ++L P Sbjct: 182 KLIDTMEDKQCIAQIEVAAGDNEVALIFRNLTPLTEQDESKIRKFAQQFQYKVFLQPGGL 241 Query: 236 --------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 S+ +S E+P Y + F P DF QVNA +N+KMV +A++ ++++ Sbjct: 242 DSVFCFYPSDAHAYLSYELPDYQ---ITFQFHPNDFTQVNAELNRKMVKQAIQLMELKNS 298 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 D VLDLFCG+GNF+LP+A + V+GVEG +VE+ NA+ N + NV FY NL++ + Sbjct: 299 DIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVM 358 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA-GY 406 + F KVL+DP R+GA +++QI ++P RIVYVSCNP TLARD++ L+ GY Sbjct: 359 EVRNLVNTSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGY 418 Query: 407 TIARLAMLDMFPHTGHLESMVLFSR 431 + ++DMFPHT H+ES+ LF + Sbjct: 419 VLITAGVMDMFPHTAHVESIALFQK 443 >UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1776 n=56 Tax=Firmicutes RepID=Y1776_LISMF Length = 453 Score = 433 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 125/446 (28%), Positives = 207/446 (46%), Gaps = 30/446 (6%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 Q I +++ DL G GV + +G LFIP LP E + + K Y A++ + Sbjct: 7 KKNQSIELTIEDLTHDGSGVGKIDGYPLFIPNTLPGEKVTAKIIKLNKNYGFARMENIET 66 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIA-DVP 124 S +R P C + CGGC QH S D Q K + MK +V E + + P Sbjct: 67 VSADRVEPPCAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENP 126 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 W YR ++++ + ++ +L GF + S I+D+ C I Q + + K R L Sbjct: 127 WRYRNKSQVPVGFV--NGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYG 184 Query: 185 AMRH--------LGHV--ELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 + + H+ T +++L T E + L + Sbjct: 185 TEPYDEQTGKGDIRHIMTRFAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQN 244 Query: 235 DS---------EILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + + +T+ G+ D+ +G+R S R F QVN + + +A++ ++ Sbjct: 245 INPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDAAEL 304 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 E+ V+D +CG+G+ +L LA +A V GVE V ++ + NA LN L N TF E Sbjct: 305 TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAE 364 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 E + A D +++DP R G +++ I+ ++P ++VYVSCNP TLARD + L Sbjct: 365 EVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTD 424 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLF 429 GY ++ +DMFP T H+E++ + Sbjct: 425 GGYVAKKVQPVDMFPMTTHIEAVTVL 450 >UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacilli RepID=C6CV49_PAESJ Length = 465 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 131/461 (28%), Positives = 206/461 (44%), Gaps = 39/461 (8%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + V + L G+GV R +G TLFI G LP E V + KK Y A++ Sbjct: 4 PVQKNDEVVVDIIGLTHDGEGVGRADGYTLFIQGALPGERVRAKVMKVKKAYGYARLQEL 63 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDV--------- 116 L S +R P C + CGGCQ QH Q K AL R+ K + Sbjct: 64 LDASADRVVPVCGIYDKCGGCQLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASG 123 Query: 117 ----SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEAL 172 V + PW YR +A++ + +L GF GS I+D QC I + + + Sbjct: 124 ITVHPTVGMNDPWRYRNKAQVPVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEV 183 Query: 173 LPKVRAC-----LGSLQAMRHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERF 222 + V+A + + G + V +G +++L +ER Sbjct: 184 VRIVKAIGRELGVSAYDEESGKGLLRHVMTRTGFVSGEIMVVLVTNGRKLPQAELWVERI 243 Query: 223 --SHSEGLDLYLAPDSEILETVSG---------EMPWYDSNGLRLTFSPRDFIQVNAGVN 271 + E + ++ + G E+ + + +G+R S R F QVN Sbjct: 244 RAALPEVKSIVQNVNTRDTNVIFGDETKVLWGSEVIYDELDGIRFAISARSFYQVNPSQT 303 Query: 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN 331 ++ A+++ + ++ V+D +CG+G +L LA +A V GVE VP +E ++NA LN Sbjct: 304 IELYRTAVDYAQLTGKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELN 363 Query: 332 GLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCN 390 G+ N +F E + + D +++DP R G ++ I+K++P R+VYVSCN Sbjct: 364 GISNASFEAGPAEVVIPRWREEGIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCN 423 Query: 391 PATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 P+TLARD L GY + +DMFP T H+E +V R Sbjct: 424 PSTLARDLRTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVR 464 >UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Alteromonadales RepID=RUMA_PSEHT Length = 441 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 151/440 (34%), Positives = 245/440 (55%), Gaps = 9/440 (2%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MAQ + A ++ +Q + + + +D G+G+A+HN K F+ LP E + T+ DK + Sbjct: 1 MAQIFKATKKPLKQQSLVLDITAMDHHGRGIAKHNNKVCFVSNALPNEQVKATIIADKAR 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS--- 117 Y+ A+ + L S R P C H+ CGGCQ QH Q K A+++L + Sbjct: 61 YSEAQTHKVLQASEYRVAPFCEHYNQCGGCQLQHLDSSQQVVEKQIAVSKLFEKFAKLDE 120 Query: 118 ----EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + YRR ARL++ + K +++ +G+R +GS I+ + +CP+L+ + Sbjct: 121 LNWQAPLLSKATHYRRSARLAVMFDKKAKKMHVGYRASGSKSIISINECPVLSEVFANVF 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 + +A+ + H++L Q +I+RHT P+S + + + + + L Sbjct: 181 TVFDNLINQHKALHSVSHLQLCQGDEQNFVIIRHTKPISEDIKALVAQSAAEQQWQLVWQ 240 Query: 234 PDSEILETVSGEMPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 +SE++E MP+Y + GL+ F +FIQVNA VNQ M+ +A WL ++ ++ VL Sbjct: 241 SESEVIEHSHLAMPFYALEELGLKFEFGLNNFIQVNASVNQAMLKQAQNWLALKGDENVL 300 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DLFCG+GNF+L LA QA +V+GVEGV + V QNA N + N F +L + Sbjct: 301 DLFCGIGNFSLVLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLTNKIETAS 360 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 W D ++LDP+R GA V++Q+ + I+YVSC+P TLARDS + +AG+ + ++ Sbjct: 361 WFNKNLDVLVLDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKI 420 Query: 412 AMLDMFPHTGHLESMVLFSR 431 +++MFPHTGH+E+M LF R Sbjct: 421 GLMNMFPHTGHIETMALFQR 440 >UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7X4_AMMDK Length = 436 Score = 429 bits (1104), Expect = e-119, Method: Composition-based stats. Identities = 139/437 (31%), Positives = 213/437 (48%), Gaps = 19/437 (4%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 Q I + + DL+ G+GV R +G +FIP LP E VTE KK YARA++ LS Sbjct: 2 QPGQQIVLEITDLNHAGEGVGRFSGLVVFIPFALPGERVRARVTEMKKSYARARLEEILS 61 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHDVSEVIA-DV 123 S R P CP FG CGGCQ H + Q K+ + ++ + +V ++ + Sbjct: 62 PSSGRVLPPCPSFGSCGGCQLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGMEN 121 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI---VDVKQCPILAPQLEALLPKVRACL 180 PW YR + RL + + + ++ +G S I +D C IL QL AL + + Sbjct: 122 PWHYRNKVRLHVAW--EGRKPVLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGLI 179 Query: 181 GSLQAM---RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSE 237 M + L AT T+++L + S + ++ + + + + + Sbjct: 180 KKHAEMLAGLTAVSLRLAAATGETMVVLEGASEHYSRWKRLVDELTAAVPVTTVVRVGAR 239 Query: 238 -ILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 E + GE DS +GL S F QVN ++ + LE+ + +RV+D +C Sbjct: 240 GKEEVLYGEGHITDSLDGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGRERVIDAYC 299 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G+G TL LA +AA V+G+E P V NA NGL +V+F EE + + + Sbjct: 300 GVGTITLFLARKAAQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEVLPELLAREG 359 Query: 356 GFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 FD V+LDP R G ++ +++ + R++YVSCNPATLARD L GY + + + Sbjct: 360 MFDLVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATLARDLGFLSAQGYRVQEVQPV 419 Query: 415 DMFPHTGHLESMVLFSR 431 DMFPHT H+E + R Sbjct: 420 DMFPHTYHVECVAYLCR 436 >UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chromatiales RepID=D0L0T9_HALNC Length = 442 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 166/443 (37%), Positives = 243/443 (54%), Gaps = 20/443 (4%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 ++ + + L G+GV+ +GK FI LP E T KK + V Sbjct: 2 RKPKLPKGEFQAQIESLTLEGRGVSHIDGKATFIGRALPGETVRFIYTNRKKHFDEGDTV 61 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADV 123 SP+R TP CPHF CGGC QH + + Q +K L R+ K + V+ + Sbjct: 62 AVEQTSPDRITPPCPHFDQCGGCSMQHLTSEKQLATKEQALLDQLQRIGKVSPATVLPAL 121 Query: 124 P---WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 WGYRR+ARL + Y+ K ++ +GFR+ + + D++ C +L P++ L ++ + Sbjct: 122 ARANWGYRRKARLGVKYVQKKGRVIVGFRERHTHFLSDLQNCRVLDPRVGERLTEIGEII 181 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP------ 234 SL+A + +E+ ++ R+ PLS +D+EKL F EG D+YL P Sbjct: 182 HSLEARERIPQIEVACGDDRVALVFRNLDPLSQSDKEKLRNFGTQEGFDIYLQPGSNDSV 241 Query: 235 ---DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 D + ++ P +D + + F+P DFIQ+N VN+ M+ +ALEWLDVQP D VL Sbjct: 242 HPLDKAHVAPLTYAHPSFD---VSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDHVL 298 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DLF G+GNFTLP+A +AA V VE +V++G Q+A NG+ N NL E Sbjct: 299 DLFAGLGNFTLPIARKAAKVTAVELDEHMVKRGAQSAAANGITNTEHVIGNLFEPDPTHL 358 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYTIAR 410 W + +D+VLLDP RAGA +M I + P RIVYVSC+P +LARD+ L+ + GY + Sbjct: 359 WMQQTYDRVLLDPPRAGAEAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIA 418 Query: 411 LAMLDMFPHTGHLESMVLFSRVK 433 ++DMFPHT H+ESM +F R K Sbjct: 419 AGVMDMFPHTSHIESMAVFERAK 441 >UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Gammaproteobacteria RepID=RUMA_FRAT1 Length = 449 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 152/446 (34%), Positives = 234/446 (52%), Gaps = 19/446 (4%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 S I + L G+G+A+ +GKT FIP LP E + T K ++ AK Sbjct: 4 SRHHNKLKEGIFEAEITALSHDGRGIAKVDGKTTFIPFTLPGEVVKFEYTFTKAKFDEAK 63 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---------DV 116 VV + S R P C HF +C GC QH S D Q K L +K+ + Sbjct: 64 VVEYVKKSSNRVNPPCDHFQICRGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENIL 123 Query: 117 SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKV 176 + GYR +ARL + Y+ K ++ +GFR+ + D+ +C +L P + + ++ Sbjct: 124 PPLRTSNTEGYRNKARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEI 183 Query: 177 RACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS 236 + + +L +H+ +E+ + MI+RH P ++ D EKL F+ +YL Sbjct: 184 SSFIETLSIYQHIAQLEIAIDDTRPAMIVRHLEPFTNEDLEKLRSFAQENNYWIYLQSKG 243 Query: 237 EIL--------ETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + ++ + + G+ + F P DF QVN +N+KM+ RA+E LD+ D Sbjct: 244 PDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIELLDISEND 303 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 ++DLFCG+GNFTLP++ A +V+GVEG P +V++ ++ A N + NV FY NL E Sbjct: 304 SIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFE 363 Query: 349 KQPWAKN-GFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK-AGY 406 + W N ++K+LLDP RAGA V I K RIVYVSC+ A LARD+ L+ GY Sbjct: 364 DKEWFNNFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGY 423 Query: 407 TIARLAMLDMFPHTGHLESMVLFSRV 432 + ++DMFPHT H+ES+ +F ++ Sbjct: 424 KLISAGVMDMFPHTMHVESIAVFEKI 449 >UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veillonellaceae RepID=D1BLZ0_VEIPT Length = 457 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 133/455 (29%), Positives = 212/455 (46%), Gaps = 36/455 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + + V+++ + S G+GV R T+F+P LP E +V++T KK YA +++ Sbjct: 5 PVKLGEEVLVTIHGIGSSGEGVGRVEDFTVFVPFTLPGETVKVSITMVKKTYATGRLLEI 64 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---HDVSEVIAD---- 122 ++ +P R P C +G CGGCQ QH + + Q K+ + +++ H +++ Sbjct: 65 VTIAPNRIDPHCDLYGFCGGCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGP 124 Query: 123 -VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 PW YR + ++ + +QMGF GS DIV CPI + Sbjct: 125 KNPWAYRNKMQMPVGGT--KGDIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAK 182 Query: 182 SLQAMRH--------LGHVELVQATSGTLMILRHTAPLSSADREKLERFS---------- 223 + L HV SG ++IL + +E+ + Sbjct: 183 EFDIEPYDEHTGKGVLRHVIGRIGQSGWMIILVTATEHLPHQEKWVEKLTERVPQVETIV 242 Query: 224 ---HSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARAL 279 + + ++ L P + +L G+ D LR T SP F QVN + +AL Sbjct: 243 HNVNGKRTNVILGPKNSVL---YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQAL 299 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 + D++ + V+D +CG G +L LA +A V+G+E V + ++NAR NG N F Sbjct: 300 AYADLKGTEIVIDAYCGTGTISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFI 359 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDS 398 + ++ K A D ++ DP RAG V+ +EP RIVYVSCNPAT+ARD Sbjct: 360 VADAAVEIPKLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDI 419 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 E L GY + + +DMFP T H+E++ L +R K Sbjct: 420 EILTHYGYELKEVQPVDMFPMTAHVEAVALLTRSK 454 >UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n=176 Tax=Firmicutes RepID=Y363_BACC1 Length = 460 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 32/458 (6%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + I V DL G GVA+ G +F+ LP E A++ + + KK +A + Sbjct: 4 KMTPPVEKNEFIDVVFEDLTHDGAGVAKVKGYPIFVKNGLPGEEAQIKIIKVKKNFAFGR 63 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSE 118 +++ ++SP R+ CP + CGGCQ QH + + Q ++K + +M+ V Sbjct: 64 LMKLHTESPYRKDAECPVYNQCGGCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHP 123 Query: 119 VIAD-VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 V+ PW YR +A++ + + L GF + G+ DI++++ C I A + + L+ +V+ Sbjct: 124 VLGMKNPWVYRNKAQVPIG--EREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVK 181 Query: 178 AC-----LGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKL-----ERFS 223 + + R+ G + V A +G +M++ T +++ + +F Sbjct: 182 RICEKHGISAYNEERNKGTLRHVMARYGQVTGEIMLVFITRTAELPNKKAIIEEIATKFP 241 Query: 224 HSEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVA 276 + + + P + + G YD G ++ S R F QVN + + Sbjct: 242 EVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYD 301 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 + LE+ + + V+D +CG+G+ +L LA +A V GVE VP +E ++NA LN + N Sbjct: 302 KTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNA 361 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLA 395 F E + K D +++DP R G ++ II ++P R+VYVSCNPATLA Sbjct: 362 EFGVGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLA 421 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 RD + L + GY + +DMFPHT H+E +VL SRV+ Sbjct: 422 RDLKVLEEGGYKTQEVQPVDMFPHTTHVECVVLMSRVE 459 >UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bacteria RepID=A9KR80_CLOPH Length = 468 Score = 426 bits (1095), Expect = e-118, Method: Composition-based stats. Identities = 129/460 (28%), Positives = 222/460 (48%), Gaps = 41/460 (8%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 +++ +++ D+ + G+G+ + +G TLF+ + + V V + KK Y A++ + + Sbjct: 7 PGKNEVVPITIEDIGADGEGIGKVHGFTLFVKDAVVGDELLVKVMKTKKTYGYARIEQIV 66 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSE----VIAD 122 + SP R PRC CGGCQ Q S + Q R K L R+ + V + Sbjct: 67 TPSPYRVNPRCEIASKCGGCQIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPMEPIVGME 126 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P+ YR +A+ + ++ +GF + I+D +C I E L+ +R L Sbjct: 127 NPYYYRNKAQFPVGKRT-DGEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQ 185 Query: 183 -----LQAMRHLGHVELVQATSG------TLMILRHTAPLSSADREKLERFSHSEGL--- 228 H G V + G + ++ + L ++D+ +++ L Sbjct: 186 ENISIYDEESHQGLVRHILLRVGFTTKELMICVVINGKELPASDK-LIKQILACPNLPKD 244 Query: 229 ----DLYLAPDSEILETVSGE--MPWYD-------SNGLRLTFSPRDFIQVNAGVNQKMV 275 + L +++ + GE +P Y ++ SP F QVN +K+ Sbjct: 245 FRVTSICLNKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLY 304 Query: 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335 AL++ D+ + V DL+CG+G +L LA +A V GVE +P +E + NA+LN + N Sbjct: 305 ELALDYTDLTGNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINN 364 Query: 336 VTFYHENLEEDVTKQPWAKNG---FDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNP 391 F+ EE + KQ G D +++DP R G +++ I+ +EP RIVYVSC+P Sbjct: 365 AEFFVGAAEEVLPKQYQLSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDP 424 Query: 392 ATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 ATLARD + L++ GY + ++ +D FPH+ H+ES+ L +R Sbjct: 425 ATLARDLKYLIEHGYDLKKVRPVDQFPHSVHVESVTLLTR 464 >UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clostridium RepID=A3DG93_CLOTH Length = 453 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 117/451 (25%), Positives = 208/451 (46%), Gaps = 32/451 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 ++ T+ + + GQGV R + T+F+ G + E E+ + + KK YA K+++ L Sbjct: 4 VKKNEVYTIDITGMTHEGQGVGRIDNFTVFVDGPVEGEKVEIKIIKVKKSYAIGKLLQVL 63 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDV----SEVIAD 122 S +R P CP + CGGC QH + + R K+ + R+ + V + Sbjct: 64 EPSSDRTEPFCPSYKRCGGCSLQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGME 123 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P YR +A+ + ++ GF S +I+D C I + + V+ + Sbjct: 124 QPVNYRNKAQYPIGRYKDG--IRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEK 181 Query: 183 -----LQAMRHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERFSHS--EGLDL 230 + G V + G +++L + ++ ++R E + Sbjct: 182 NNISTYDEITGEGLVRHIMTRVGFKTGEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSV 241 Query: 231 YLAPDSEILETV--------SGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEW 281 L +++ + G D G + SP F QVN + + +AL++ Sbjct: 242 VLNVNTKRTNVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDY 301 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 + ++ V DL+CG+G +L L+ +A + GVE V A V+ +NA++NG++N F Sbjct: 302 AQLTGKETVFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVG 361 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEA 400 E+ + + D V++DP R G V++ ++ ++P RIVYVSCNPATLARD + Sbjct: 362 EAEKVIPEMYEKGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKY 421 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L + G+ + + +DMFP T H+E + L + Sbjct: 422 LAEGGFEVREVQPVDMFPWTYHVECVALIEK 452 >UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Acinetobacter junii SH205 RepID=D0SQB6_ACIJU Length = 469 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 166/457 (36%), Positives = 246/457 (53%), Gaps = 28/457 (6%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARH----------NGKTLFIPGLLPQENAEVTV 54 + AK+R I T + G+G+A + +GK +FI L E + + Sbjct: 3 HKAKKRPVHHPIYTFDIEAFSHEGRGIAHYGTHPDHPKEKHGKKVFIRYALVGETVKAKI 62 Query: 55 TEDKKQYARAKVVRRLS-DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK 113 T + A+++ S S +R P C HFGVCGGC QH D Q K L ++ Sbjct: 63 TNQTTRLEEAEMITLESDASEQRVAPVCAHFGVCGGCSLQHIHPDQQIVLKQNVLKSHLE 122 Query: 114 HDVS-------EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 H I V YRRRAR+ + Y+PK +L MGFR+ S+ + D++QC +L Sbjct: 123 HFAGLQPEEWLAPIRSVKTDYRRRARIGVRYIPKQNRLVMGFREHHSNHLTDIQQCKVLD 182 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE 226 L L +++ L SL H+GH+EL +++RH L+ +D +L +F+ + Sbjct: 183 QVLSDSLVELKTLLESLTGKAHIGHIELAMGDDEVSLLIRHLDELNVSDVNQLRQFTLLK 242 Query: 227 GLDLYLAPDS-EILETVSGEM------PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 G LY + L V E + ++ FSP DF QVN+ VN +MV A Sbjct: 243 GWQLYFQSKGIDSLHRVDDEHAPMRLHYSLEDFKVKFAFSPLDFTQVNSHVNARMVQLAC 302 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNGLQNV 336 E LD++ +RVLDLFCG+GNF+LPLA + V+GVE +VE+ +NA+ N L Sbjct: 303 ELLDLKEGERVLDLFCGLGNFSLPLARCVGETGRVIGVEASDEMVERATENAQANYLTQA 362 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLAR 396 +F+ ++L +D + WAK GFD +L+DP R+GA VMQ + RIVYVSCNP+TLAR Sbjct: 363 SFFSQDLTKDFSHHSWAKQGFDALLIDPPRSGAYEVMQYVPNFGAKRIVYVSCNPSTLAR 422 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 D+ L + GY + + A++DMF HT H+ES+ LF +++ Sbjct: 423 DAGVLAQYGYQLKKAAVMDMFTHTEHVESIALFEKIE 459 >UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Colwellia psychrerythraea 34H RepID=RUMA_COLP3 Length = 469 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 167/467 (35%), Positives = 257/467 (55%), Gaps = 38/467 (8%) Query: 1 MAQFYSAK-RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59 MA ++ A + T+ Q +TV+V+ LD G GVAR K +FI G+LP E +V V E K Sbjct: 1 MANYFKAAVKPKTSNQRLTVTVDKLDMNGVGVARWQNKPIFIAGVLPDEIVDVKVIEQKS 60 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM------- 112 +YARAK++ S R P+C HFG+CGGC Q +++ Q K + L Sbjct: 61 KYARAKLISIDKQSASRVIPQCQHFGLCGGCDLQMLALEEQLLFKQQKITDLFSRSFSTQ 120 Query: 113 ---------KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCP 163 I PW YRR+AR+ + + K Q +GFR+ ++ + +K CP Sbjct: 121 NITPEINTAHLPWQAAIKSSPWHYRRKARIGVQFD-KNAQATIGFRQKSTNQLAAIKSCP 179 Query: 164 ILAPQLEALLPKVRACLGSLQAMRHLGHVELVQA-------------TSGTLMILRHTAP 210 +L L A+ P ++ L L +GH+E++QA + ++++R P Sbjct: 180 VLVEPLSAIFPLLKKLLAQLTVKSAIGHIEVIQADISDTSSADKIQKDNQVVVVVRQLKP 239 Query: 211 LSSADREKLERFSHSEGLDLYLAPDSEILETV------SGEMPWYDSNGLRLTFSPRDFI 264 ++ D + ++ + + ++ L S E+ + ++ ++ FS DFI Sbjct: 240 MNDTDIGLWQLYAQRHCWHVIIDDGNKQLPLADIKGGDSFELSYELTDTSKVYFSSNDFI 299 Query: 265 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 Q+N VN M+++AL WL++ D VLDLFCG+GNF+L LA A VVGVEG+ +V+K Sbjct: 300 QINHQVNNAMISQALAWLNILATDNVLDLFCGLGNFSLALAKHAKRVVGVEGMQTMVDKA 359 Query: 325 QQNARLNGLQNVTFYHENLEEDVTKQPWAKNG-FDKVLLDPARAGAAGVMQQIIKLEPIR 383 QN+ +NGL N FY +L +PW + FDKVLLDPARAGA + QI +L+ Sbjct: 360 TQNSLVNGLDNCQFYQADLNSHWLLEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIPC 419 Query: 384 IVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 ++YVSC+PATLARDS L+ GY + +++++DMF T H+E+M+LF+ Sbjct: 420 VLYVSCDPATLARDSAILVSKGYKLEKISLMDMFSQTKHVETMILFT 466 >UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=23 Tax=Firmicutes RepID=Y768_OCEIH Length = 459 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 38/461 (8%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MA K +I T++ DL G GVA+ G LF+P +LP E A+V V + K Sbjct: 1 MA---KTKPPVNKNEIYTLTFEDLTHEGNGVAKIEGYPLFVPEVLPDEQAKVKVVKVNKN 57 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------ 114 + K++ S R P C CGGCQ QH S DLQ + K + +MK Sbjct: 58 FGFGKLLELTKTSSHRVEPTCHVH--CGGCQLQHMSYDLQLQMKQGQVHNVMKKVAHLDQ 115 Query: 115 -DVSEVIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIV-DVKQCPILAPQLEA 171 V ++ + P YR + ++ + K ++ +GF + S I+ + C I + Sbjct: 116 VPVHPILGMEEPSHYRNKVQIPVG--EKNGEVIVGFYQKRSHRILQNQDTCHIQDEAINE 173 Query: 172 LLPKVRACLGSL-----QAMRHLGHVELVQATSG------TLMILRHTAPLSSADR---E 217 +LP R + H G + + G ++ + T+ DR E Sbjct: 174 VLPFTRQLMNKYGIQAYDEKSHRGQLRHIMVRVGHYTKDIMIVFVTKTSKFPEKDRIIKE 233 Query: 218 KLERFSHSEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGV 270 E+F + + + + + + GE YD G L SP+ F QVN Sbjct: 234 LTEQFPQVKSIVQNVNDQRTNVVLGKKTKVLWGENYIYDKIGDLTFAISPKSFFQVNPVQ 293 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 + + +ALE+ ++ +D V+D +CG+G+ +L LA +A V G+E VP +E + NA + Sbjct: 294 TKVLYDKALEYANIDKDDVVIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEI 353 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSC 389 NG+ NV F E+ + K D +++DP R G ++ +I ++P RIVYVSC Sbjct: 354 NGMNNVEFSVGQAEKVMPKWKEQGLDPDVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSC 413 Query: 390 NPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 NP+TLARD L G+ ++ +DMFP T H+E + + Sbjct: 414 NPSTLARDLRILEDGGFETKQVQPVDMFPSTNHVECVAELT 454 >UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22 Tax=Gammaproteobacteria RepID=RUMA_XANC8 Length = 444 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 170/447 (38%), Positives = 242/447 (54%), Gaps = 20/447 (4%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNG---KTLFIPGLLPQENAEVTVTED 57 MA+ R R ++ DL G+GVAR +G K FI G LP E T Sbjct: 1 MAR----SRNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTAR 56 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMK 113 + + AK V L SP+R PRCPHFGVC GC QH Q +K L R+ Sbjct: 57 SRHFDEAKTVEVLQASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGH 116 Query: 114 HDVSEVIADV---PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLE 170 V+ + WGYRR+ R S+ + K + +GFR+ + D+ C + PQ+ Sbjct: 117 VTPQTVLPALVGDTWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIG 176 Query: 171 ALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDL 230 +P++ A + + R + +E + + +RH PLS+ D + L F+ + + Sbjct: 177 EKIPQLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAI 236 Query: 231 YLAPD--SEILETVSGEMPW---YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 +L P + E+P + L F P DFIQVNA +NQKM+A AL LD + Sbjct: 237 FLQPGGVDSVHPLWPQEVPLSFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAK 296 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 P+DRVLDLFCG+GNFTLPLA VVGVEG LV + ++NA+ NGL N FY +L + Sbjct: 297 PDDRVLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQ 356 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KA 404 D + W + GFDK+LLDP R+GA V+QQ+ + RIVYVSC+P +LARD+ L+ + Sbjct: 357 DQRQTAWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQ 416 Query: 405 GYTIARLAMLDMFPHTGHLESMVLFSR 431 G+++ +DMFPHT H+ES+ +F + Sbjct: 417 GFSLLSAGAMDMFPHTAHVESIAVFEK 443 >UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19 Tax=Proteobacteria RepID=RUMA_PSYCK Length = 513 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 169/477 (35%), Positives = 250/477 (52%), Gaps = 55/477 (11%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARH--------------NGKTLFIPGLLPQENAEV 52 +RR + + +++ L G+GVA + +GK +F+ LP E+A V Sbjct: 39 TRRRLKDAEPLPFTIDGLSHDGRGVAVYGNGFGETDGHITDKHGKKIFVSFALPGESALV 98 Query: 53 TVTEDKKQYARAKVVRRL-SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL 111 +T + + VR + +PER P CPHFGVCGGC QH D Q K + LA + Sbjct: 99 KITNSRTSFEEGDAVRITANPNPERVVPPCPHFGVCGGCNLQHWQPDAQITFKQSVLAEM 158 Query: 112 MKHD--------VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCP 163 + H + V+ D GYR +ARL + Y+ K + +GFR+ S+ + ++ +C Sbjct: 159 LVHQANVAPDHWLEPVVGDR-LGYRTKARLGVRYVVKKETALVGFRERSSNFLAELNECH 217 Query: 164 ILAPQLEALLPKVRACLGSLQAMRHLGHVELVQA---------TSGTLMILRHTAPLSSA 214 IL P++ + ++ + +L + + +EL +I+R+ PLS Sbjct: 218 ILDPRIGFEIENLKTLISTLDSRDKIAQLELAMGEHLPELPDGDQPVALIVRNLEPLSDG 277 Query: 215 DREKLERFSHSEGLDLYLAPD----------------SEILETVSGEMPWYDSNGLRLTF 258 D +KL+ F + LYL SE + ++P YD L F Sbjct: 278 DIDKLKVFFAARNWQLYLQSKGADSIQRIALRDTDDLSEQFGRLYYQLPEYD---LTFEF 334 Query: 259 SPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAAS---VVGVE 315 P DF QVN VN++M A + LD++ +RVLDLF G+GNF+LPLA VVGVE Sbjct: 335 IPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGSVVGVE 394 Query: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQ 375 G A+ + NAR NG+ N FY ++L D T +PWA GFD +L+DP R+GA +MQ Sbjct: 395 GSEAMTARAADNARRNGINNTEFYSQDLTHDCTDKPWANQGFDALLIDPPRSGAWEIMQY 454 Query: 376 IIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + K RIVYVSCNPATLARD++ALL+ GY + ++DMF HTGH+ES+ F ++ Sbjct: 455 LPKFNAERIVYVSCNPATLARDTKALLEQGYRLTHAGVMDMFCHTGHVESIARFEKI 511 >UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) n=3 Tax=Acinetobacter RepID=C0VPT5_9GAMM Length = 463 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 165/455 (36%), Positives = 240/455 (52%), Gaps = 28/455 (6%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARH----------NGKTLFIPGLLPQENAEVTV 54 + AK+R + I T V G+G+A + GK +FI L E + + Sbjct: 3 HKAKQRQAHQPIYTFKVEAFSHEGRGIAHYGTHPDHPKEKQGKKVFIRNALVGETVQAKI 62 Query: 55 TEDKKQYARAKVVRRL-SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK 113 T + A++++ + R P CPHFG+CGGC QH D Q K L ++ Sbjct: 63 THQTTRLEEAEMLKLEGEAATGRVEPICPHFGICGGCSLQHIHPDEQILLKQNVLQSHLQ 122 Query: 114 HDVS-------EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 H I YRRRAR+ + Y+P+ +L MGFR+ S+ + + QC +L Sbjct: 123 HFAGLQPEQWLTPIRSSKIDYRRRARIGVRYIPRQDRLVMGFREHHSNHLTTIHQCKVLD 182 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE 226 L +P++R CL L A H+GHVEL +++RH L+ +D L +F+ Sbjct: 183 QTLSDAIPELRKCLEGLMAKAHIGHVELAMGDHEVALLIRHLEELNVSDVNHLRQFALQR 242 Query: 227 GLDLYLAPDS----EILETVSGEMPWY---DSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 LYL P ++ V M + D +R FSP DF QVN+ VN +M+ A Sbjct: 243 QWQLYLQPRGADSLHRVDDVQAPMRLHYHLDDFDIRFAFSPLDFTQVNSAVNARMIQLAC 302 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNGLQNV 336 E L ++ +RVLDLFCG+GNF+LPLA V+GVE +V + +NA+ N L Sbjct: 303 ELLQLKEGERVLDLFCGLGNFSLPLARCVGDTGQVIGVEASDEMVLRATENAKANSLNQA 362 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLAR 396 F+ ++L +D + PWAK GFD +L+DP R+GA VMQ + RIVYVSCNP+TLAR Sbjct: 363 IFFSQDLTKDFSHHPWAKQGFDALLIDPPRSGAFEVMQYVPSFGANRIVYVSCNPSTLAR 422 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 D+ L + GY + + A++DMF HT H+ES+ LF + Sbjct: 423 DAGVLAQHGYQLKKAAVMDMFTHTEHVESIALFEK 457 >UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Pseudomonadaceae RepID=B3PL62_CELJU Length = 485 Score = 416 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 160/443 (36%), Positives = 233/443 (52%), Gaps = 20/443 (4%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + +++ + ++ G+G+A +GKTLF+ G + E + ED ++A A+ Sbjct: 40 QPQPLQRNKRLGELLIDRFSHDGRGLASLDGKTLFVDGAIAGETVTARLLEDHPRFAEAR 99 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALAR-------LMKHDVSE 118 V + SP+R P C H+ CGGCQ QH + Q K + L V Sbjct: 100 VEDVILASPDRVEPPCAHYATCGGCQLQHLKPEAQLLMKQQVVLEQVHRWGGLTPKRVLP 159 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 + GYR RARL + Y + +GFR+ + +++ C +L P L L+ +R Sbjct: 160 PLRSESLGYRSRARLGVWYEA-DSSVTLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQ 218 Query: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD-SE 237 L + A + + H+ELV A SG +I+RHT PL + R+ L + E ++L P+ ++ Sbjct: 219 WLQARVANKAVTHIELVAAQSGPAVIVRHTKPLVALQRQALAELAQRESCQVWLEPNGNQ 278 Query: 238 ILETVSGEMP----WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 L + G D GL L F P+DF QVN VN +MV +ALE L D VLD Sbjct: 279 GLTDLEGSPVDPHLVLDVAGLPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLVLDF 338 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED-VTKQPW 352 FCGMGNFTLP+A++ A V+G+E V +V + Q NA GL N+ F +L + + Sbjct: 339 FCGMGNFTLPMASRVARVIGLEVVEPMVTRAQANATRLGLDNLEFLKADLSQMDSPRLRQ 398 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLE------PIRIVYVSCNPATLARDSEALLKAGY 406 + +LLDP R GA ++ Q+ L RIVYVSCNPATLARD+ L +AGY Sbjct: 399 LCSQASAILLDPPRDGAKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAEAGY 458 Query: 407 TIARLAMLDMFPHTGHLESMVLF 429 + L ++DMFPHT H+ESM LF Sbjct: 459 GLDALGVMDMFPHTSHVESMALF 481 >UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C5ELW2_9FIRM Length = 475 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 134/473 (28%), Positives = 205/473 (43%), Gaps = 55/473 (11%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 Q TV++ D++ G GV + +G FI + + + KK Y A+++ L Sbjct: 3 KNQEFTVTIEDMNEDGAGVGKLDGYIWFIKDTVIGDVVRAKAMKMKKSYGFARLMEVLEP 62 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEV------IAD 122 S R P CP CGGCQ Q S + Q R K L R+ K E+ + Sbjct: 63 SAGRVEPPCPVSRQCGGCQLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMGME 122 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 PW YR +A+ K ++ GF + DI+ C + + + +L ++ + Sbjct: 123 NPWRYRNKAQFPFG-RNKDGEIIAGFYAGRTHDIIGNDDCLLGVEENQEILGIIKGFMKE 181 Query: 183 -----LQAMRHLGHVELVQAT----SGTLMI----------------LRHTAPLSSADRE 217 H G V V +G LM+ LR + S AD Sbjct: 182 NGLEPYDENAHKGLVRHVLIRKGFKTGELMVCLVVNGRTLGGRLEDGLRDSRADSLADNS 241 Query: 218 K-------LERFSHSEG-LDLYLAPDSEILETV--------SGEMPWYDSNG-LRLTFSP 260 +E+ +G + + + E + G D G ++ SP Sbjct: 242 ADRLAGCLVEKLCQVKGMTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYIGDVQYQISP 301 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 F QVN +K+ ALE+ D+ + V DL+CG+G +L LA +A V GVE +P Sbjct: 302 LSFYQVNPVQTEKLYGTALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQA 361 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN-GFDKVLLDPARAGAAGV-MQQIIK 378 +E ++NA LNG+ NV F+ EE + +Q D +++DP R G V + I+K Sbjct: 362 IEDARRNAALNGMDNVEFFVGKAEEVLPEQYEKNQIHADVIVVDPPRKGCDTVCLDTILK 421 Query: 379 LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + P ++VYVSC+ ATLARD L GY + ++ DMFP T H E +V R Sbjct: 422 MRPEKVVYVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCR 474 >UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI04_EUBR3 Length = 493 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 121/491 (24%), Positives = 202/491 (41%), Gaps = 71/491 (14%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 I + + D+ + G+G+ ++G T F+ L + T+ KK Y A+V + Sbjct: 2 KKNDIFELEITDMGTDGEGIGHYDGMTFFVKDALIGDVITARATKLKKNYGYARVEEIKT 61 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDV--------SEV 119 S R P+C CGGCQ Q S + Q K L R+ V Sbjct: 62 PSTFRVEPQCELHKRCGGCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPV 121 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 D P+ YR +A+ + Y + + GF + S +I+ V+ C + PQ + +L ++ Sbjct: 122 GTDNPYRYRNKAQFPVGYD-RDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEW 180 Query: 180 LGS-----LQAMRHLGHVELVQATSG------TLMILRHTAPLSSADR---------EKL 219 + H G V V G + ++ + L + R E+L Sbjct: 181 MNECGITPYDENTHKGLVRHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCERL 240 Query: 220 ERFSHSEGLDLYLAPDS------EILETVSGEMPWYDS-------------NGLRLTFSP 260 + + + ++ + + G D+ G+ SP Sbjct: 241 SKIDGMTSISYNINKENTNVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISP 300 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 + F QVN +K+ + AL + + + V DL+CG+G +L L+ +A V GVE VP Sbjct: 301 QSFYQVNPKQTEKLYSTALAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQA 360 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG------------------FDKVLL 362 +E + NA+LNG+ N F+ E+ + + D +++ Sbjct: 361 IEDAKNNAKLNGITNAQFFVGKAEDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVV 420 Query: 363 DPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 DP R G + ++ + P RIVYVSC+ ATLARD + L + Y + + D F HT Sbjct: 421 DPPRKGCDEKCLDTMLAMSPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTT 480 Query: 422 HLESMVLFSRV 432 H+ES+ L RV Sbjct: 481 HVESICLLERV 491 >UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25 Tax=Pseudomonadaceae RepID=RUMA_PSEPF Length = 461 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 176/434 (40%), Positives = 242/434 (55%), Gaps = 10/434 (2%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 S + T + +S+ L + G+G+A GKT F+ G L E E V + A+ Sbjct: 16 SKAPQIPTGKKQRLSIERLANDGRGIAFFEGKTWFVLGALAGEEVEARVLGAHGKVVEAR 75 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSE 118 R S S R C H G CGGC QH + Q K LA + + + Sbjct: 76 TERVFSASELRRPAPCQHAGRCGGCSVQHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAA 135 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 + +GYRRRAR+++ + K ++L++GFR AGS DIV + +CP+L L+ ++ ++ Sbjct: 136 PLTGPEFGYRRRARIAVRWDSKAKKLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPE 195 Query: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI 238 L L + LGHVEL +S ++LRH APLS AD L+ F L+L + E Sbjct: 196 MLRRLSKPQALGHVELFSGSS-LAVLLRHMAPLSEADLTILKDFCAFHEAQLWLHGEGEP 254 Query: 239 LETVSGEMPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + Y + L+L + P DFIQVNAGVN+ MVA+ALEWL ++RVLDLFCG Sbjct: 255 QPVDDAQSLGYHLEQWDLQLAYRPGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCG 314 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +GNF LPLA A VV VEGV +V++ NA N L N F+ +L + +T W NG Sbjct: 315 LGNFALPLAKAAREVVAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQPLTDAEWIGNG 374 Query: 357 FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 F VLLDP R GA V++++ L R+VYVSCNPATLARD+ L+K GY + R +LDM Sbjct: 375 FSAVLLDPPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDM 434 Query: 417 FPHTGHLESMVLFS 430 FP T H+E+M LF Sbjct: 435 FPQTAHVEAMALFE 448 >UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDX4_CLOTS Length = 452 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 118/453 (26%), Positives = 200/453 (44%), Gaps = 31/453 (6%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 + + ++++ GQGV R +G +F+ G L E + E K Y A V + Sbjct: 2 QNINIGDKYELYIDNMAHEGQGVGRLDGIAVFVRGALKGERVLAKIDEKHKNYLNAHVEK 61 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHD---VSEVIA 121 L S ER P+C + G CGGC QH S Q K L+R+ K + + Sbjct: 62 ILLPSQERIMPKCIYAGKCGGCTLQHLSYKGQLEFKKQVVDDSLSRIGKINTIVYDTIGM 121 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 D P YR +A + + ++ GF + S +I+ + C I + + VR Sbjct: 122 DNPLYYRDKAEYPVGI--EDGNIKSGFYASKSHNIIAIDSCMIQSDYSIEAMKTVREWAN 179 Query: 182 SL-----QAMRHLGHVELVQATSG----TLMILRHTAPLSSADREKL-----ERFSHSEG 227 + G + + G +M++ + +++L + + Sbjct: 180 NYKISIFDEKSGNGLLRYIITKVGFSTKEVMVILVINGIDIPYKDELINTLKKNIKELKS 239 Query: 228 LDLYLAPDSEILE------TVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALE 280 + L + L + G+ D G + SP F QVN + + +ALE Sbjct: 240 VVLNINKSRSRLVMGSENIVIYGDGYITDYIGDKKFEISPLSFFQVNPIQTKVLYEKALE 299 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + D++ ++ V+D++CG+G ++ A V G+E V VE ++NA +NG+ N F Sbjct: 300 YADLKGDEIVIDVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIA 359 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSE 399 E + + D ++LDP R G V+ + +K+ P +I+Y+SCNP TLARD Sbjct: 360 GKAEHVMKRLYKEGLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLR 419 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY ++ +DMFP+T H+E +VL SR+ Sbjct: 420 IFEDNGYKTEKVQPVDMFPYTYHVECVVLMSRL 452 >UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FXL7_9FIRM Length = 499 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 134/459 (29%), Positives = 209/459 (45%), Gaps = 39/459 (8%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKV 66 AK+ Q+ V DL GQGV + G F+ G++P E + V + K + A++ Sbjct: 44 AKQVFKKNQVHQGQVVDLTHEGQGVVKIEGYPFFVEGVIPGEQVAIKVLKVGKSFGFARL 103 Query: 67 VRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSEVI-- 120 L+ SP+R P G QH + Q ++K A + RL K S + Sbjct: 104 EEVLTPSPDRVEITDPIGRQIGTMTLQHMAYPAQLKAKQALVKQVFSRLGKFPESLEVRP 163 Query: 121 ---ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 D PW YR +A++ + + QL+ GF + S +V V+ I P ++ + R Sbjct: 164 TYGMDHPWQYRNKAQIPVRTV--KGQLETGFFRKNSHQLVPVENFHIQDPAIDQAILVTR 221 Query: 178 ACLGS-----LQAMRHLGHVELVQATSG------TLMILRHTAPLSSADR---------- 216 L G + + G L+++ + L + D+ Sbjct: 222 DILRQLGYSAYDEESRKGQIRHIIVKRGHYSGQVMLILVVNGKGLPAEDKLIKALTKAIP 281 Query: 217 --EKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQK 273 L SH++ ++ + P + +L G+ + D GL + SP F QVN + Sbjct: 282 NLVSLVLNSHTQANNVIMGPTNRLL---WGQPVYQDQMLGLDFSISPHSFYQVNTPQAEA 338 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + ALE D+ + VLD +CG+G +L LA QA V +E VP ++ + NA NGL Sbjct: 339 LYRYALEAADLSGSETVLDAYCGIGTISLALARQAGQVYAMEIVPEAIDMARANAEANGL 398 Query: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPA 392 NVTF EE + FD ++DP R G ++ +I+L P +IVYVSCNPA Sbjct: 399 SNVTFQAGKAEEVLPAWQAEGIHFDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCNPA 458 Query: 393 TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 T ARD + L +AGY + + +D+FP T H+E + L R Sbjct: 459 TCARDCQLLAQAGYELQWVQPVDLFPKTAHIEVVGLLER 497 >UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J6R9_DESRM Length = 457 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 132/455 (29%), Positives = 214/455 (47%), Gaps = 36/455 (7%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 T I+ + ++ L G+GV R+ +F+PG L E V + + KK +AR ++V Sbjct: 3 NNATVGDIVDLEIHGLGHSGEGVGRYQKLAVFVPGALIGERVRVRINQVKKSFARGQLVE 62 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSEVIADV- 123 L + R P C + VCGGCQ QH Q K + + ++ EV+ + Sbjct: 63 ILKQTTARIVPNCESYQVCGGCQLQHLDYQEQLTYKRSVVESALFKIGGLKGVEVLPTLG 122 Query: 124 ---PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI---VDVKQCPILAPQLEALLPKVR 177 PW YR + L + ++++GF GS ++ + + C ++ ++ ++ + Sbjct: 123 MRNPWHYRNKIHLQVK--EAKGRIKLGFYAEGSYELAAGLAGQSCLLVQKEINQVIAILE 180 Query: 178 ACLGSLQAMRH--------LGHVELVQA-TSGTLMILRHTAPL-----SSADREKLERFS 223 + S + + L HV + Q SG M++ T+P ++ R + R Sbjct: 181 ELINSYKLTPYHWGEKRGLLRHVMIRQGFHSGQCMVVLVTSPEEWQAENAFSRALVARQP 240 Query: 224 HSEGLDLYLAPD------SEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVA 276 + + + E + G+ D NGL S F QVN +++ Sbjct: 241 KIVSVIRNINRNPGRIVLGEENRVMYGKEYIVDELNGLNFNISANSFYQVNTLQTEELYQ 300 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 +A E+ +Q +RV+D +CG+G L LA VVG+E VP V ++NARLNG+ N Sbjct: 301 KAKEFAQLQGHERVIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNT 360 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLA 395 F+ +E+ + + D V+LDP R G V+ I + + RIVYVSC+PATLA Sbjct: 361 KFFQGAVEKLLPRMAK-DLKPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLA 419 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 RD L K GY ++ +DMFP T H+E +VL S Sbjct: 420 RDLGVLDKLGYQTLQVQPVDMFPWTYHVECVVLMS 454 >UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=64 Tax=Staphylococcus RepID=Y1582_STAES Length = 456 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 125/452 (27%), Positives = 213/452 (47%), Gaps = 32/452 (7%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 ++ T V DL G GV + + +FIP L E + + + KK +A K++ +S Sbjct: 5 KKNEVKTGKVIDLTHEGHGVVKVDRYPIFIPNALIDEEIKFKLIKVKKNFAIGKLIEVIS 64 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD-------VSEVIADV- 123 +S +R TP C ++ CGGCQ QH + Q K + L + E I V Sbjct: 65 ESDDRVTPPCIYYAKCGGCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVN 124 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 PW YR ++++ + + Q+ MGF + S DI+D+ C I Q + ++ +V+ L Sbjct: 125 PWRYRNKSQIPVGQSN-SNQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNEL 183 Query: 183 ----LQAMRHLGHVELVQATSG----TLMILRHTAPLSSADREKL-----ERFSHSEGL- 228 G + + +G +M++ T + E L + F + + Sbjct: 184 NISIYNEKTKTGLIRHLVVRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIK 243 Query: 229 -DLYLAPDSEILE----TVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 ++ + + I+ T+ G+ D + + S F Q+N+ +K+ +AL + Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 + ++ VLD +CG+G L +A A V GVE VP ++ + NA N L+N TF Sbjct: 304 QLTGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGK 363 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E+ + D V++DP R G + ++KL P RIVY+SCNP+T RD++ L Sbjct: 364 AEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQIL 423 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 + Y + + +DMFP T H+E++ LF R + Sbjct: 424 AEQ-YELVEITPVDMFPQTTHIETVALFVRKE 454 >UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase protein n=1 Tax=Xanthomonas albilineans RepID=D2U9R4_XANAL Length = 467 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 166/440 (37%), Positives = 236/440 (53%), Gaps = 20/440 (4%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNG-KTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 R R + DL G+GVAR G K F+ G LP E T + + A+ + Sbjct: 31 RNRLDRTPFQTEIADLSHDGRGVARREGDKVAFVAGALPGEIVLAEPTARNRHFDEARTL 90 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHD---VSEVI 120 + L S +R PRCPHFGVC GC QH + D Q +K L R+ V + Sbjct: 91 QVLQASSQRVAPRCPHFGVCAGCVLQHLAEDQQILAKQQVLTDNLERIGHVTPQVVLPAL 150 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + WGYRR+ R S+ + K + +GFR+ + D+ C + PQ+ + + + Sbjct: 151 SGASWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSVCHTVIPQVGLKVAALAELV 210 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSE--- 237 L A R + +E + + + RH PLS D++ L F+ + ++L P Sbjct: 211 ERLDAKRDIPQIEFIAGDATVALTFRHMQPLSEHDQDALIAFAQAHDFAIFLQPAGVDSV 270 Query: 238 -----ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 +S +P +D + L F P DFIQVNA +NQ+M+A AL LD Q DRVLD Sbjct: 271 HPLYPQAAPLSFRLPQWD---VELAFRPLDFIQVNAVLNQQMIAHALALLDAQSGDRVLD 327 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 LFCG+GNFTLPLA VVGVEG LV + ++NA+ NGL N F+ +L +D + PW Sbjct: 328 LFCGLGNFTLPLARTVREVVGVEGDAGLVTRARENAQRNGLDNAQFFAADLTQDQRQAPW 387 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK-AGYTIARL 411 + GFDK+LLDP R+GA V+QQ+ + RIVYVSC+P +LARD+ L+ G+ + Sbjct: 388 MRQGFDKLLLDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVLKAA 447 Query: 412 AMLDMFPHTGHLESMVLFSR 431 +DMFPHT H+ES+ +F R Sbjct: 448 GAMDMFPHTAHVESIAVFER 467 >UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APX5_PELPD Length = 446 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 135/433 (31%), Positives = 211/433 (48%), Gaps = 22/433 (5%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 +S++ L G GV R +GK F+P P + V +T +K+ Y A+++ ++ +R T Sbjct: 10 ISIDRLAFGGSGVGRIDGKVCFVPFACPGDELLVRITAEKRSYLTARIISIVTPGQDRIT 69 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEVIADVPWGYRRR 130 P CP FG CGGC QH + Q K A + V + + +GYR R Sbjct: 70 PPCPLFGSCGGCSWQHIAYHRQLEEKRRIFADALWRGARAPGELVADVVASPLTYGYRSR 129 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQ-CPILAPQLEALLPKVRACLGSLQAMRHL 189 + L+ L++GF + G+ + D Q CPI P + +L +R L + + Sbjct: 130 VQFKLH--GAGPNLRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPDPTKI 187 Query: 190 GHVELVQATSGTLMILRHTAP----LSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 + L A G ++I+ + + RE+ + + L L S + + + Sbjct: 188 PQINLECAEKGAVVIVNYIGDDHQGAKAFFRERAAQLEQATALYLQTGRKSTLQKVFGDD 247 Query: 246 MPWYDSNG-------LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + Y G LT+ P F QVNA N ++ E+ D + +D++LDL+CG G Sbjct: 248 LLQYSQEGESSTAPACSLTYRPGGFAQVNAAQNSALLRLVREFADCRRDDQILDLYCGNG 307 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 NF+LPLA A+V G+E + + NARLNG+ NV F + K F Sbjct: 308 NFSLPLARGVAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAGKLMGDGRRFP 367 Query: 359 KVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 ++LDP R+GAA +++ I +L +I+Y+SC+P+TLARD L GYT+ +DMFP Sbjct: 368 TIILDPPRSGAADLLEHIPRLGADKIIYISCDPSTLARDCGVLFGKGYTVVSSVPVDMFP 427 Query: 419 HTGHLESMVLFSR 431 T HLES+ L R Sbjct: 428 QTFHLESVTLLRR 440 >UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=5 Tax=Cyanobacteria RepID=Y942_THEEB Length = 449 Score = 413 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 130/444 (29%), Positives = 211/444 (47%), Gaps = 34/444 (7%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I + ++ L G+GV R + +F+ +P + V +T K+QYA KV+ + S + Sbjct: 9 TIELRIDSLSHTGEGVGRWQDRVVFVADTVPGDRLRVRLTHVKRQYAHGKVLEVVQPSGQ 68 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHD----VSEVIADVPWGY 127 R P C CGGCQ Q + Q +K A+AR+ + + + A P+GY Sbjct: 69 RVRPNCIVADKCGGCQWQRVAYATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGY 128 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R + L + + G+ + GS +V++ QCP+ P+L LL ++ L R Sbjct: 129 RNKVTYPLGR--RHGAVVAGYYQKGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPIYR 186 Query: 188 HLGH--------VELVQATSGTLMILRHTAPLS----SADREKLERFSHSEGLDLYLAPD 235 H + + Q T L+ L PL + L+RF G+ + Sbjct: 187 EQTHEPGFRHLGLRIGQRTGEQLITLVLAGPLPAGLAAEAEGWLQRFQGVIGVCVNFNHH 246 Query: 236 ------SEILETVSGEMP-WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + + ++G W + G+R + F QVN +++V +W+ ++ Sbjct: 247 VGNRIFGDETQVLAGRPYLWEEMAGVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPTGQE 306 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 R++DL+CG+G +LPLA A V+GVE A V++ NA+ NG+ N F EE + Sbjct: 307 RLVDLYCGVGTLSLPLAGAVAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWLP 366 Query: 349 KQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-Y 406 + D ++LDP R G V+ I+ P R++YVSC+PATLARD L G Y Sbjct: 367 R---YDQAVDVLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTGTY 423 Query: 407 TIARLAMLDMFPHTGHLESMVLFS 430 +A++ LDMFP T H+E++ L + Sbjct: 424 QLAKIQPLDMFPQTAHVETIALLT 447 >UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M217_GEOSF Length = 437 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 138/436 (31%), Positives = 218/436 (50%), Gaps = 24/436 (5%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V++ L + G G R +GK F+P P + A V +T +KK YA +++ +S S R Sbjct: 4 VEVAIEKLANGGAGFGRCDGKAFFVPFTAPGDVARVRITCEKKSYAEGELIELVSSSALR 63 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVI----ADVPWGYR 128 P CP FG+CGGC QH Q K + L R + V+ A P+GYR Sbjct: 64 VKPPCPVFGICGGCNWQHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYGYR 123 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK-QCPILAPQLEALLPKVRACLGSLQAMR 187 R +L +NY + + ++GF + S +VD+ C I + L +R + Sbjct: 124 SRVQLKVNY--QGGKTRLGFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPDPG 181 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDL----YLAPDSEILETVS 243 ++ +++ + ++ ++ + A S A+ + H E DL ++ + Sbjct: 182 NISQIDIARGDDESISVIVNHAGASVAEVSEY-LLQHREISDLIGSMFIRHKNSTTSIFG 240 Query: 244 GEMPWYDSNG--------LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 E Y +G L FS F Q+N N +++ ++ + +++VLDL+C Sbjct: 241 AEHLSYRISGNTLPGGSEKTLFFSKDAFSQINYQQNMQLIRVVSDFAALTGKEKVLDLYC 300 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G GNF++PLA +AA V G EG + ++NA NG+ N++F+ + V K A+ Sbjct: 301 GNGNFSIPLADKAAHVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKKLAAARE 360 Query: 356 GFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 FD V+LDP R GAA VM I L RI+YVSC+PATLARD L K G+ + + +D Sbjct: 361 TFDVVVLDPPRNGAAEVMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQVINIQGVD 420 Query: 416 MFPHTGHLESMVLFSR 431 MFP T HLES+ L ++ Sbjct: 421 MFPQTYHLESVTLLTK 436 >UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BS02_9GAMM Length = 450 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 155/441 (35%), Positives = 235/441 (53%), Gaps = 15/441 (3%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 +RR +Q + V+ L G+G+A GK F+ G L E + T+ +Q+ K Sbjct: 3 QPRRRRLPQQPLEAEVSALSHEGRGIAHVEGKITFVRGALAGERVRLRYTKRHRQWDEGK 62 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSE 118 ++ L +PER P C HFGVCGGC QH + Q K + ++H Sbjct: 63 LLEVLRPAPERVEPGCIHFGVCGGCALQHLTPQQQLTFKETVVREKLRHMGGVEPSTWLA 122 Query: 119 VIADVPWGYRRRARLSLNYL-PKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + WGYRR+ARL++ Y+ K ++ +GFR+ S+ + D+ C +L P++ A +P++ Sbjct: 123 PLGSPAWGYRRKARLAVKYVAGKDDRVLVGFRETHSTLVADLASCRVLDPRIGAHIPQLA 182 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP-DS 236 + L + +E+ ++ R+ AP + D L F+ +Y P D Sbjct: 183 ETIRCLSIFDRVPQIEVAAGDQAVGLVFRNLAPFTVEDYRLLSAFARQYDFYVYEQPGDK 242 Query: 237 EILETVSGEMPW----YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 + + P + + + F P DF QVN VN +V RA+ L +QP+DRVLD Sbjct: 243 ASVRPIWPRAPQLSYALPDHAVSVFFEPTDFTQVNPAVNHALVERAIALLALQPQDRVLD 302 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP- 351 L+CG+GNF +A Q ASVVG+EG ALVE+ ++NA N + NV F +L + + Sbjct: 303 LYCGLGNFAFCIARQVASVVGLEGDDALVERARENAARNAITNVVFQRADLSRGIAELAH 362 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYTIAR 410 ++G +VLLDP R+GAA V+ I L RIVYVSC P+TLARD+ L+ + GY +A Sbjct: 363 LQRDGVSRVLLDPPRSGAAEVLADIAALRAERIVYVSCGPSTLARDAGRLVHEYGYRLAA 422 Query: 411 LAMLDMFPHTGHLESMVLFSR 431 ++DMFPHT H+E + LF R Sbjct: 423 AGVMDMFPHTAHVECITLFVR 443 >UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1I4_HALOH Length = 453 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 128/451 (28%), Positives = 213/451 (47%), Gaps = 33/451 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 +I + ++ L G+ + R+ G +F+P +P E V + E KK YAR ++ L Sbjct: 2 AANGDLIELKLDTLGHGGEAIGRYRGLVVFVPEGIPGEKVRVKIKERKKNYARGEIKEIL 61 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHD---VSEVI-AD 122 + +PER+ P C FG+CGGC Q LQ K L R+ + V+EVI AD Sbjct: 62 TPAPERKEPECEVFGLCGGCHLQQMDYSLQLLHKQKIVKDTLERIGGFEEVRVNEVIGAD 121 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 PW YR +A+ L + ++ GF + G+ +V +QC I P + + K + L + Sbjct: 122 HPWIYRNKAQFPLGSDNE-GRVITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNN 180 Query: 183 -----LQAMRHLGHVELVQATSGT----LMILRHT-----APLSSADREKLERFSHSEGL 228 H G + + G +++ T L R+ + +G+ Sbjct: 181 YDLTVYDEKTHTGLLRHLVVRVGICTNQALLIFVTRDKKFKELQEIARKLMTEIPELKGV 240 Query: 229 DLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEW 281 + P + + G + D G +R SP F QVN +++ ++ Sbjct: 241 LQNINPRRTNVIMGDKTLLIKGNDYYIDYIGSIRYAISPHSFFQVNTLQTERLYNTVRKY 300 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 + ++ V+D +CG G+ + LA +A +V G+E V + +E ++NA LNG+ N F Sbjct: 301 AGLSGQETVVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKG 360 Query: 342 NLEEDVTKQPWAKN-GFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSE 399 +E+ + + K D ++ DP R G M ++++ P +IVYVSCNPATLARD + Sbjct: 361 KVEDKLPELVDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLK 420 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 +KA Y I + +D+FP T H+E +V Sbjct: 421 E-IKACYDINEVQPVDLFPQTYHVECVVKLE 450 >UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDP0_9FIRM Length = 453 Score = 410 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 134/454 (29%), Positives = 223/454 (49%), Gaps = 22/454 (4%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M Q + + T + D G GV RH G F+ LL E+AE+ VT KK Sbjct: 1 MIQKGERRMALKKNDVFTAAAVDYTFDGLGVVRHEGLCFFVKDLLKGESAEIGVTAVKKN 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------ 114 +V+RRLS+SP+R PRCP CGGCQ Q +LQ K +A + Sbjct: 61 VGYGRVIRRLSESPQRIEPRCPVARQCGGCQLQIMEAELQAEFKRHRVADCFQRIGHLDV 120 Query: 115 DVSEVIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 +V V++ + PW YR + ++ + + + ++ G+ ++ S DIVD +C + + +L Sbjct: 121 EVQPVLSMEFPWNYRNKVQVPVG-VNRDGKVISGYYRSHSHDIVDFDECCLHSELENQIL 179 Query: 174 PKVRACLGSLQAMRHLGHVELVQA-TSGTLMILRHTAPLSSADR-EKLERF--SHSEGLD 229 +R+ + L H+ + A +G +M++ + + E +ER ++ + Sbjct: 180 RSLRSWIEEAGDPAQLRHLLIKHAFKTGQVMVVLIAKSENLKGKDELIERLTAAYPQIRS 239 Query: 230 LYLAPDSEILETVSGEMPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + L + + G+ + GLR S + F Q+N + + +A+E Sbjct: 240 IILNVNGREDNVILGDREIVLWGSASIEEELLGLRFQISAKSFYQINPVQTEVLYTKAIE 299 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + E+ V+D++CG G L A +A V+G+E VP+ VE ++NA NG+ N F Sbjct: 300 LAGLTGEETVIDVYCGTGTIGLSAARKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFIC 359 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSE 399 + + + D ++DP R G G + ++K+ P RIVYVSC+PATLARD Sbjct: 360 GDAGVCTAQLLERRIQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCA 419 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L + GY + + +DMFP T H+E++VL S+V+ Sbjct: 420 VLNERGYGVEVVQPVDMFPQTTHVETVVLMSKVR 453 >UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDG7_HELMI Length = 490 Score = 409 bits (1052), Expect = e-113, Method: Composition-based stats. Identities = 144/488 (29%), Positives = 218/488 (44%), Gaps = 66/488 (13%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 I T S+ + G+GVAR G LFIP +P E + +T+ KK +ARA+++ L Sbjct: 2 RPGDIDTFSIERMTLQGEGVARPGGMALFIPECMPGERVKARITQVKKNFARAELLEVLE 61 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVI----ADV 123 +PER P C F CGGCQ Q Q R K AL RL + + V A Sbjct: 62 AAPERVEPPCRVFSRCGGCQLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVGAAN 121 Query: 124 PWGYRRRARLSLNYLPK--TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 PW YR R ++ L + LQMG+ + S ++V+ +CP+L +L +R L Sbjct: 122 PWRYRNRVQMHLRREAGAPGKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHLP 181 Query: 182 SLQAMRHLGHVELVQATS------GTLMILRHTAPLSSADREKLERFSHS---------- 225 + L +V T+ G +M++ + SA R+ + + Sbjct: 182 EIDPAGELPIRHVVLKTTTPLERAGEMMLILVFSAWRSAWRKAVGDLAKRLMGEGATGEG 241 Query: 226 --------------------------EGLDLYLAPDSEILETVSG-------------EM 246 + LY+ + + V G + Sbjct: 242 ATGEGATGEGATGEGATGEGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKERL 301 Query: 247 PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT 306 Y GL++ P F QVN + + E + + ++D +CG G +L LA Sbjct: 302 TDYLPGGLQIEVGPASFTQVNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLAR 361 Query: 307 QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 366 A V+G+E VP VE Q+NA NG+ NV F +E+ + D ++LDP R Sbjct: 362 DCARVIGIEEVPMAVEDAQKNAEQNGITNVEFLTGKVEDLLPSLLERACVPDVIVLDPPR 421 Query: 367 AGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES 425 G V++ I + P RIVYVSC+PA+LARD+ L G+ + ++ +DMFP TGH+E+ Sbjct: 422 RGCHARVIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVET 481 Query: 426 MVLFSRVK 433 +VL SRVK Sbjct: 482 VVLMSRVK 489 >UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD9_9CLOT Length = 460 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 133/452 (29%), Positives = 212/452 (46%), Gaps = 35/452 (7%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 +I + + + G GV R +G +F+PG + +V + + K YA K+ + Sbjct: 5 RKNEIAVIEITGYTAEGNGVGRLDGMAVFVPGAAVGDTLQVRIVKILKNYAFGKIEELVV 64 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHD---VSEVIADVP 124 S +R P CP F CGGC +H S + +K A+ R+ D V V+ Sbjct: 65 PSKDRIIPDCPCFSQCGGCSFRHISYKAELEAKRRRVEDAIQRIGGFDRFPVPPVVGAAK 124 Query: 125 WG-YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 YR +A+L + + + MGF S IV ++ CP+ + V+ + Sbjct: 125 INRYRNKAQLPIG-ADRDGRGIMGFYALHSHRIVPIEDCPLQPKMFAQAVASVKQWMEEY 183 Query: 184 QAMRH--------LGHVELVQAT-SGTLMI--------LRHTAPLSSADREKLERF---- 222 + + L H+ L +A+ +G LM+ L H+ L RE L Sbjct: 184 KVPVYHEESHSGLLRHLYLREASATGALMVCLVGNGDELPHSGELVKRLREDLPCLESVV 243 Query: 223 --SHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 S+ E ++ L + L G GL SP F QVN + + A E Sbjct: 244 FNSNREKTNVILGKRCQALWGKDG--IVDHLCGLSFFLSPLSFYQVNRDQAEILYRLAGE 301 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + +Q ED VLDL+CG G + +A++A V+GVE VP +E + NA NG++N+ F Sbjct: 302 YASLQKEDTVLDLYCGTGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFIC 361 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSE 399 + + V V++DP R G V++ I+++ P +I+YVSC+PATLARD + Sbjct: 362 GDSAQAVQMLRKRGERPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLK 421 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+KAGY + LA +D+FP T H+E++ L + Sbjct: 422 LLVKAGYCLQTLAPVDLFPRTAHVETVALLEK 453 >UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01B5 Length = 446 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 131/449 (29%), Positives = 210/449 (46%), Gaps = 36/449 (8%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + V V D+++ G GVA++ G +FIPG +P + A+V + + K YA K++ + Sbjct: 3 KNEEYIVEVIDINANGGGVAKYEGMAVFIPGAVPGDVAKVKIIKVAKSYAVGKLLELVEA 62 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSEVIA----DVP 124 S R P C + CGGC QH + Q + K L R+ K EV+ + P Sbjct: 63 SEHRAEPPCVYAAKCGGCVAQHIKYEFQLKYKQKQVKDCLERIGKIREVEVLPTIAMENP 122 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-- 182 YR +A+ + + ++Q+GF A S +VD++ C I + A++ +R Sbjct: 123 IHYRNKAQYPIREV--DGKIQIGFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXK 180 Query: 183 ---LQAMRHLGHVELVQATS-----GTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 H G + + ++ L ++ +ER G+ L Sbjct: 181 ISIYNEATHKGLARHLVIRNSINFDEAMVCLVINGKKLPHAQDLVERLRAIPGITGILLN 240 Query: 235 DS---------EILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + E T+ G D G L S F QVN + + AL + Sbjct: 241 HNTAKGNVILAEQTTTLDGRDYIMDKIGELTFKISLLSFFQVNPVQTKVLYDIALGVAAL 300 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + VLD +CG+G +L LA +A VVGVE +P V +NA++NG+ NV F N E Sbjct: 301 TGSETVLDAYCGIGTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAE 360 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 + V FD V++DP R G ++ I+ P ++VY+SC+PATLARD + + + Sbjct: 361 DVVL-----GEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYE 415 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY + ++ +DMFP+T H+E+ VL SR+ Sbjct: 416 NGYVVNKVQPVDMFPYTSHVETCVLLSRL 444 >UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRD2_9SYNE Length = 483 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 130/454 (28%), Positives = 211/454 (46%), Gaps = 35/454 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 K + + + V++ DL + G GV R + +F+P P + V +T+ K + K Sbjct: 33 KPKWRQGETLKVTITDLSNSGDGVGRWEDRVVFVPNTAPGDEMLVKLTKAKPTHGFGKPA 92 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMK---HDVSEVI 120 +S SP+R P C CGGCQ Q + + Q +K ALAR+ K V V+ Sbjct: 93 GIVSPSPKRVRPACIVADKCGGCQWQQVNYEEQLAAKHRLVVDALARIGKLSNVRVDPVL 152 Query: 121 -ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 A+ GYR +A L P T+ ++ G+ + GS +V++ QCP+ +L+ LL V+ Sbjct: 153 AAEEQLGYRNKATYPLGLSP-TKDVKAGYYQKGSHRLVNLNQCPVQDERLDPLLAAVKKD 211 Query: 180 LGS-----LQAMRHLGHVELVQ----ATSGTLMILRHT-----APLSSADREKLERFSHS 225 + + H GH++ + +G +++ + + ++ +ER+ Sbjct: 212 IQAREWKIYDERSHKGHIKHLALRIGRRTGQILVTLVSRSTKLKGIHEQAQQWMERYPEV 271 Query: 226 EGLDLYLAPDS-------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARA 278 G+ + L E L P F QVN ++++ Sbjct: 272 VGVLVNLNWKKTNAIFGPETFLIAGSSYLEEKFANLTFHIQPATFFQVNTTQAERLLDEI 331 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 L + ++ ++D +CG+G FTLPLA Q +G+E V + Q+NA LNG++NV F Sbjct: 332 QTELALTGDEVIVDAYCGVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENVGF 391 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARD 397 ++ + D +LLDP R G V++ I+ ++P RIVYVSCNPATLARD Sbjct: 392 RIGDVAALLPDLDV---KPDILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARD 448 Query: 398 SEALLK-AGYTIARLAMLDMFPHTGHLESMVLFS 430 L + GY + R+ D FP T H+E V Sbjct: 449 LRVLSETGGYRVTRVQPADFFPQTAHVECAVFLE 482 >UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacteria RepID=A4XGR8_CALS8 Length = 452 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 129/453 (28%), Positives = 221/453 (48%), Gaps = 34/453 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 Q V ++ L+ QG+AR +G +F+ +L E ++ + E KK+YA+A ++ L Sbjct: 2 VKKSQEYIVKIDTLNHQAQGIARIDGFVVFVDNVLIDEVVKIKIEEVKKEYAKANLIEIL 61 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMK--HDVSEVIA-DV 123 SP R+ P CP++ +CGGC HA Q + K A R+ K +++VI + Sbjct: 62 EKSPYRKEPECPYYYLCGGCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPRINDVIGMEN 121 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 P+ YR + L + K + Q+GF + + DIVD+ C I + ++ ++ + Sbjct: 122 PFRYRNKTALPVGGDYK--KPQIGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKH 179 Query: 183 ----LQAMRHLGHVELVQATS-----GTLMILRHTA---PLSSADREKLERFSHSEGLDL 230 +H G + + + ++IL T L + ++ L FS + L L Sbjct: 180 KIEVYDEKKHKGVLRHIVVRNSFAFDEMMIILVCTKVPENLETIKKDILNNFSKIKSLYL 239 Query: 231 YLAP--------DSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEW 281 L P D +IL + G D G L SP+ F QVN+ + + ++ +++ Sbjct: 240 NLNPKRTNVILGDEDIL--IWGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKY 297 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 L + V D++ G+G ++ +A V +E V VE +++++ NG+ N+ F Sbjct: 298 LRNIDAEIVFDVYSGIGTISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICG 357 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 E ++ K V+LDP R+G +++ +I+ + I+YVSCNP+TLARDS Sbjct: 358 RAEIEIPKLLKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSI 417 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L GY I + +DMFP T H+E +VL + VK Sbjct: 418 LFSNGYEILEVQPVDMFPQTFHVECVVLMTNVK 450 >UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58 Tax=Betaproteobacteria RepID=RUMA_BORA1 Length = 476 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 166/431 (38%), Positives = 231/431 (53%), Gaps = 19/431 (4%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + LD +G+AR +GK +F+ G LP E K Y A+V L+ S +R Sbjct: 6 LKIESLDLEARGIARRDGKVVFVEGALPGERVYAATVRRKPSYEIARVETVLTPSSQRVE 65 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGYRRRA 131 PRCPHFGVCGGC QH Q K AL H V + WGYR RA Sbjct: 66 PRCPHFGVCGGCAMQHLEPTSQVAIKQRALEDTFWHVGKIRPQRVLPPLHGPTWGYRYRA 125 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGH 191 RLS+ +PK + +GF + SS + D+++C +L + LL +RA + +L + Sbjct: 126 RLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLLPLRAMIAALSRPERIPQ 185 Query: 192 VELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS----EILETVSGEMP 247 +E+ T ++LRH PL+ D L F+ + +L L+ G+ Sbjct: 186 IEVALGEGVTALVLRHIEPLNDHDITVLRDFAARHNVQWWLQSKGPDTVHPLDPAHGDTL 245 Query: 248 WYD--SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 Y GLR+ + P DF QVN +N+ MV+RAL+ L+VQP DRV DLFCG+GNFTLPLA Sbjct: 246 AYTMPEFGLRMPYRPTDFTQVNHAINRSMVSRALKLLEVQPTDRVADLFCGLGNFTLPLA 305 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 TQ VGVEG AL ++ + A +GL+ F NL E FD++L+DP Sbjct: 306 TQGREAVGVEGSKALTDRALEAAARHGLEGRTRFATLNLFEVDVSWLRGLGYFDRMLIDP 365 Query: 365 ARAGAAGVMQQIIKL----EPIRIVYVSCNPATLARDSEALL-KAGYTIARLAMLDMFPH 419 R GA V Q + +L P RIVYVSCNPATLARD+ ++ + GY + +++MFPH Sbjct: 366 PREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVHEGGYVLKAAGVINMFPH 425 Query: 420 TGHLESMVLFS 430 TGH+ES+ +F Sbjct: 426 TGHVESIAVFE 436 >UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Proteobacteria RepID=RUMA_RALPJ Length = 450 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 165/445 (37%), Positives = 234/445 (52%), Gaps = 34/445 (7%) Query: 19 VSVNDLDSFGQGVAR------HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + + LD +G+ R GK +F+ G LP E K Y +A VV L Sbjct: 7 LDIVSLDGEARGIGRLTNEDGTPGKVVFVEGALPGERVMYRSHRVKPSYEQAGVVNILRQ 66 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-------ARLMKHDVSEVIADVPW 125 S R TP+C FGVCGGC QH Q K L A+L V IA W Sbjct: 67 SASRVTPQCKFFGVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDW 126 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 GYR RARL++ ++ + +GF + SS + D+ C +L P + ALL +R +G L Sbjct: 127 GYRYRARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSI 186 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 ++ + +EL T ++LR+ P+++ D +L F+ + +L P +TV Sbjct: 187 VQRMPQIELAVGQDVTALVLRNLEPITAEDEAELRAFADHHNIQFWLQPKGP--DTVYPF 244 Query: 246 MPW-------YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 P G+ + F P DF QVN +N+ +++RAL+ LD QP DR+LDLFCG+G Sbjct: 245 YPLDRTLTYTLPEFGITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIG 304 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGF 357 NFTLP+AT+A V+G+EG AL + NA+ NGL +F NL E A F Sbjct: 305 NFTLPMATRAREVMGIEGSEALTTRALANAQHNGLHTKTSFACRNLFEVSADDVAALGKF 364 Query: 358 DKVLLDPARAGAAGVMQQIIKLE----------PIRIVYVSCNPATLARDSEALL-KAGY 406 D+ L+DP R GA V + + +L P RI+YVSCNPATLARD+ L+ +AGY Sbjct: 365 DRWLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAGY 424 Query: 407 TIARLAMLDMFPHTGHLESMVLFSR 431 +A +++MFPHT H+ESM +F R Sbjct: 425 RLAGAGVVNMFPHTSHVESMAVFER 449 >UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=6 Tax=Geobacter RepID=Y1748_GEOSL Length = 438 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 144/434 (33%), Positives = 206/434 (47%), Gaps = 23/434 (5%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + L G G R GK F+P P + + V DK Y + + L SP+R Sbjct: 6 IRIESLAFGGAGFGRLEGKACFVPFTAPGDLVRIRVAVDKPSYLEGETLEILEPSPDRIA 65 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEV----IADVPWGYRRR 130 P CP FG+CGGC QH D Q +K L R + + V +AD P+GYR R Sbjct: 66 PPCPVFGICGGCSWQHLRYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVADNPFGYRCR 125 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVK-QCPILAPQLEALLPKVRACLGSLQAMRHL 189 A+ + + +L MGF + GS ++D +C I P + L +R L + Sbjct: 126 AQFKIRWS--GGRLHMGFYRRGSHYVIDAPAECVICDPAINLTLRDLRLVLPDFSEPDKI 183 Query: 190 GHVELVQATSGTLMILRH---TAPLSSAD--REKLERFSHSEGLDLYLAPDSEILETVSG 244 ++ G ++++ H P +AD R + G+ L I+ Sbjct: 184 PQIDAATGEDGHVLLVVHYIGDNPGRAADFFRSIQPHLASVTGIHLQCGRKDSIMHVWGV 243 Query: 245 EMPWYDSNGL-------RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 + Y GL L+F F QVN N+ +V++AL V P RVLDLFCG Sbjct: 244 DSLSYTVPGLGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGVGPGRRVLDLFCGN 303 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF 357 GNF+LPLA+ A +VGVE ++ ++NA NG+ +V F + + + A F Sbjct: 304 GNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGEHF 363 Query: 358 DKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 D V+LDP R GA + ++ L P RIVYVSC+P TL RD L KAGY + +DMF Sbjct: 364 DTVILDPPRTGARDAVGEVAILAPERIVYVSCDPPTLGRDLGVLRKAGYRVVGSHGVDMF 423 Query: 418 PHTGHLESMVLFSR 431 P T H+ES+ L R Sbjct: 424 PQTYHIESVTLLIR 437 >UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n=84 Tax=Bacillales RepID=Y542_BACC1 Length = 459 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 115/455 (25%), Positives = 199/455 (43%), Gaps = 34/455 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 + + Q V++ L G+GV + +FIPG LP E T+ ++ +A AKV Sbjct: 7 ESKLEVGQTFPVTIKRLGINGEGVGYFKRQVVFIPGALPGEEVVAETTKIQRGFAEAKVK 66 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVI--- 120 + SP R CP + CGGCQ QH Q K A + M + + E I Sbjct: 67 KVRKASPHRVKAPCPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPT 126 Query: 121 --ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 + PW YR +++L + K +++ G K S ++D+ C I VR Sbjct: 127 LGMENPWHYRNKSQLQVGR--KDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRR 184 Query: 179 CLGS-----LQAMRHLGHVELVQATS----GTLMILRHTAPLSSADREKLERFSHSE--- 226 L + G V + + G + + T ++E+ + Sbjct: 185 ILEKLNVSIYNEKKQKGLVRTIVTRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPA 244 Query: 227 GLDLYLAPDSEILETVSGEMPW---------YDSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 + + + G+ + L S R F Q+N + Sbjct: 245 VKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNE 304 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 A + + ++++D +CG+G L LA AA V G++ +P + ++NA+ +G N Sbjct: 305 AKKAAALTGNEKIVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTK 364 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLAR 396 + E+ + K D +++DP R G +++ I+K++P ++VYVSCNP++LAR Sbjct: 365 YEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 D +AL+K+ Y + + +DMFPHT H+E++V R Sbjct: 425 DVQALMKS-YEVEYVQPVDMFPHTAHVENVVKLVR 458 >UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5X0_NATTJ Length = 454 Score = 403 bits (1035), Expect = e-111, Method: Composition-based stats. Identities = 120/449 (26%), Positives = 209/449 (46%), Gaps = 27/449 (6%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 R + +T++++DL+ G+GV ++ +F+P LP E +T+TE KK YAR +V++ Sbjct: 5 RPVKKEEKLTLTIHDLNHQGEGVGKYRNFAIFVPFALPGEKVRITITEVKKNYARGQVLQ 64 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--------HDVSEVI 120 S +R P CP F CGGCQ QH S Q + K +A MK + + Sbjct: 65 HQDRSSQRVKPPCPFFQECGGCQLQHLSYKGQLQYKENLVANQMKKVAGLKNPRVLPAIG 124 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + PW YR + ++ + P + ++G + S ++V++ C I +L K+R + Sbjct: 125 MESPWYYRNKFQIPVK--PIGGKPRLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLV 182 Query: 181 GSLQAMRH---LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL--------D 229 S + + L H+ + L D +++ G+ + Sbjct: 183 DSYEKEFYNCELKHIISRVGDKTDQVQLTFVTGSEKIDNKQMILEPLKNGMANLVGIVQN 242 Query: 230 LYLAPDSEIL----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + P +L +T+ G D+ + S F QVN + + + E + Sbjct: 243 INKKPRGNVLGDRFKTLWGREYLMDNLLDKKFRVSAGAFYQVNPSQTEVLYQKVFELCKL 302 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + + V+D++CG+G +L A A+ VVG+E V+ N +NG +N FY E Sbjct: 303 KGVENVMDIYCGIGTISLLAAENASKVVGIEIAEEAVKDANINKNINGQENAWFYQARAE 362 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 ++ T+ + V++DP R G ++ + + P +I YVSCNPATLARD L++ Sbjct: 363 DEKTESIIQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPATLARDVGKLIE 422 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY +DMFP T H+E + + +++ Sbjct: 423 FGYYPELFQPVDMFPQTTHIEVICILTKI 451 >UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 Tax=Bacillales RepID=YFJO_BACSU Length = 466 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 110/450 (24%), Positives = 199/450 (44%), Gaps = 34/450 (7%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 Q +++ L G+GV K +F+PG LP E V T+ + +++ ++ + Sbjct: 13 KVGQTFPLTIKRLGINGEGVGYFKKKVVFVPGALPGEEVVVQATKVQPKFSEGRIKKIRK 72 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---------DVSEVIA- 121 S R P CP + CGGCQ QH + Q R K + + ++ ++ E I Sbjct: 73 ASEHRVAPPCPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGM 132 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 D PW YR +++ + ++ + G S DIV +K C + P VR L Sbjct: 133 DNPWNYRNKSQFQIGRS-QSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILE 191 Query: 182 S-----LQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKL-----ERFSHSEG 227 + G V + +G + ++ TA + +E++ +R + Sbjct: 192 DFNVSVYNERKRKGDVRTIVTRVGFETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKS 251 Query: 228 LDLYLAPDS------EILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALE 280 + + E + ++G+ + G + S R F Q+N K+ + Sbjct: 252 IIQNVNGAKTSVIFGEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKK 311 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + +++V+D +CG+G + +A A V G++ + ++ ++NA+ +G+ N T+ Sbjct: 312 AAQLTGKEKVVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVT 371 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSE 399 E + K D V++DP R G + I K++P R VYVSCNP+TLA+D + Sbjct: 372 GTAEHWLPKWTKEGFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQ 431 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 L K Y + + +DMFP T H+E++ Sbjct: 432 TLSKD-YRVDYIQPVDMFPQTAHVEAVARL 460 >UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8Z2_9FIRM Length = 455 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 132/441 (29%), Positives = 218/441 (49%), Gaps = 23/441 (5%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 + + G GV + +G LF+ G+ E E+ VT+ +K + K+ R + Sbjct: 16 KKNDRVIGVCSGYTHDGHGVVKIDGFPLFVKGMCEHEEGEIIVTQVRKGFGFGKLWRLMK 75 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIA-DVP 124 S R P CP CGGCQ QH S Q R K + +MK +V +VI + P Sbjct: 76 KSEARVEPFCPVAKQCGGCQLQHVSYAEQLRFKKQKVIDVMKRIAQIDVEVLDVIGMENP 135 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 YR + ++ + K Q+ GF + S+ I+D+ C I + ++ +L ++ L Q Sbjct: 136 TFYRNKGQIPVGITNK--QVVTGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLLNKYQ 193 Query: 185 AMRHLGHVELVQA-TSGTLMI--LRHTAPLSSAD---REKLERFS--HSEGLDLYLAPDS 236 H+ + A SG +M+ + ++ LS + +E +E S +++ D+ Sbjct: 194 NADLFRHLLIKDAFASGEVMVVWIVRSSKLSHKEEMCKELVENLPYIKSVIINVNTREDN 253 Query: 237 EIL----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 IL + G D+ + L S R F QVN +++ +ALE+ + ++ V+ Sbjct: 254 VILGKEEHVLYGNSYITDAIHDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEVI 313 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DL+CG+G ++ LA +A V+GVE V A + + NA+LN + N+ F + K Sbjct: 314 DLYCGVGTISMFLAQKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKLE 373 Query: 352 WAKNGFDKVLLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIAR 410 D V++DP R G + + I+K++P RIVYVSC+PATLARD + L + GY Sbjct: 374 KQGKKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQV 433 Query: 411 LAMLDMFPHTGHLESMVLFSR 431 + +DMFP + H+ES+VL + Sbjct: 434 VQPVDMFPFSFHVESIVLLQK 454 >UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FPA8_DESHD Length = 446 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 130/436 (29%), Positives = 206/436 (47%), Gaps = 22/436 (5%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 K+ T + IT+ L S G GV H GK F+ GLLP E ++ + E+KK + R +++ Sbjct: 13 KKSADTHRPITIECLRLSSDGSGVGYHEGKATFVSGLLPGETGQIRIVEEKKNWQRGQLL 72 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVD----LQQRSKSAALARLMKHDVSEV---- 119 S ER P C FG CGGCQ QH + ++R AL R+ K + +V Sbjct: 73 SLCKTSAERIEPPCSVFGRCGGCQLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHP 132 Query: 120 --IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 D PW YR +ARL + + +G+ + S V C +++ + + + Sbjct: 133 TLGMDEPWRYRNKARLH-----RGEGNTLGYYQEKSKATVPFTDCLLISESMNRWVREAE 187 Query: 178 ACLG--SLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD 235 A LG L + + + G M++ + E + + + Sbjct: 188 AILGQQDKNLFPDLNALTFRENSQGEGMLILDSLKDVRQADVWSEMGGGTHSV-WGINSS 246 Query: 236 SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 E + D G R SP F+QVN +K+ + L+W ++ E V DL+C Sbjct: 247 GEPERIAGQKEFTEDVLGARFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEKVVWDLYC 306 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G+G TL LA +A V G+E P VE ++NA+ N + NV F E+ + + Sbjct: 307 GIGTITLALAAKAKKVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQQ---IGD 363 Query: 356 GFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 V+LDP RAGA V++ +++L+P +I+YVSC+ TLARD L GY + + + Sbjct: 364 YPHIVVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVEVQPV 423 Query: 415 DMFPHTGHLESMVLFS 430 DMFP T +ES+++ + Sbjct: 424 DMFPWTVSVESIIVMT 439 >UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT87_9CLOT Length = 506 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 127/486 (26%), Positives = 214/486 (44%), Gaps = 61/486 (12%) Query: 5 YSAKR--RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYA 62 + +R + V++ D+ G G+ R +G FI + + V + KK Y Sbjct: 12 FGKRRFEKMKKNDEFVVAIEDMSEDGAGIGRVDGYIWFIKDTVIGDVVRAGVMKMKKTYG 71 Query: 63 RAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHD--- 115 A+++ + S +R PRCP CGGCQ Q + Q R K L R+ + Sbjct: 72 FARLIEVVEPSKDRVEPRCPVARQCGGCQLQMMDYEAQLRFKERKIYNNLKRIGGMENLR 131 Query: 116 -----------------------------VSEVIADVPWGYRRRARLSLNYLPKTQQLQM 146 + + PW YR +A+ + K ++ Sbjct: 132 LPGEECGSEDEGAGTGERAGADGRKIVRMEPIMGMEEPWRYRNKAQFPFG-MSKDGRVIT 190 Query: 147 GFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH--LGHVELVQA------- 197 GF + I++ + C + + +L VR + + GH LV+ Sbjct: 191 GFYAGRTHSIIENEDCLLGVEENREILRIVREFMEEFGVKPYDEEGHRGLVRHCLIRKGF 250 Query: 198 TSGTLMI-LRHTAPLSSADREKLERFSHSEG-LDLYLAPDSEILETVSGE--------MP 247 +G +M+ L D +ER +G + L ++E + G+ Sbjct: 251 ATGEIMVCLVVNGRKLPKDEVLVERLRQVDGMTSISLCVNTEKTNVILGDEVVNLWGPGY 310 Query: 248 WYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT 306 D G ++ SP F QVN K+ ALE+ + E+ V DL+CG+G +L LA Sbjct: 311 ITDYIGDVKYQISPLSFYQVNPAQTVKLYGTALEYAGLTGEETVWDLYCGIGTISLFLAQ 370 Query: 307 QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPA 365 +A V GVE VP +E ++NA++NG++NV F+ EE + ++ K + D +++DP Sbjct: 371 KAKKVYGVEIVPQAIEDARRNAKINGIENVEFFVGKAEEVLPREFEEKQIYADVIVVDPP 430 Query: 366 RAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R G V + I+K+ P R+VYVSC+ ATL RD + L + G+ + R+ DMF +GH+E Sbjct: 431 RKGCDEVCLDTIVKMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVE 490 Query: 425 SMVLFS 430 ++++ Sbjct: 491 TVIMMQ 496 >UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=11 Tax=Lactobacillus RepID=Y1698_LACJO Length = 450 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 201/450 (44%), Gaps = 30/450 (6%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 QI+ + + DL GVA +G T+F+ LP E + + KK +A AK+ + Sbjct: 2 QKNQIVDLEITDLSYEAMGVAHLDGMTVFVNNALPGEIVSAKLLKVKKNFAFAKIEKIKK 61 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-KHDVSEV------IADVP 124 +SP+R + + G H D Q K + L+ K D+ V + Sbjct: 62 ESPDRINVKLRQWVQTGLASLAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEE 121 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-- 182 GYR +A++ + + +L +GF + S D+V + P+++ +L KVR L Sbjct: 122 TGYRNKAQVPVREV--NGKLDIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNH 179 Query: 183 ---LQAMRHLGHVELVQAT----SGTLMI-LRHTAPLSSADREKLERFSHSEGL-DLYLA 233 + + G V ++ +G +M+ L +E + S +G+ + L Sbjct: 180 VPAYDEIHNKGEVRYLEVRRSKATGEIMVILVCLHKDFPQLKEVTKEISEIKGVTSVVLN 239 Query: 234 PDSEILETVSGEMPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + + + G+ + + SP+ F Q+N+ ++ A++ D+ Sbjct: 240 HNPKKTNVILGKKDYLLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADL 299 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 +P+D V+D + G+G L +A +V G+E + VE NA+LNG+ N + E Sbjct: 300 KPDDVVIDAYSGIGTIGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAE 359 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 E + + D + +DP R G + ++ P +IVY+SCNPAT+ RD + + Sbjct: 360 EVMPRWAKEGLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKE 419 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 GY + +DMFP T H+E++ + R + Sbjct: 420 QGYDFDEIDPVDMFPQTPHVEAVAVLERTE 449 >UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH77_MOOTA Length = 473 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 139/474 (29%), Positives = 203/474 (42%), Gaps = 68/474 (14%) Query: 19 VSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 +++ L+ G G+ +G+ +F+PG LP E V V K+ YAR ++V + SP+R Sbjct: 5 ITIIGLNHEGAGIGHLQDGRVIFVPGALPGEQVLVEVVSVKRNYARGRLVEVVEASPDRV 64 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIA----DVPWGYRR 129 P CP CGGC QH Q K AL RL V+ PWGYR Sbjct: 65 LPPCPEAASCGGCDLQHLDYRAQLHWKRRLVIDALQRLGHLRDIPVLPVLGMANPWGYRN 124 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 + RL + + ++GF + GS ++ CP+L P L + L L L Sbjct: 125 KVRLHVR------RGRLGFYRPGSHELAPFSCCPLLPPGLLKAARAIVRLLPEL--PPGL 176 Query: 190 GHVELVQA-TSGTLMILRHTAPLSSADREKLE----RFSHSEGLDLYLAPDSEILE---- 240 HV L Q +G L+++ P DRE E RF G+ + LA Sbjct: 177 QHVTLRQGLATGELLVVLEALPGWQGDRELAEKLAGRFPELVGV-VSLAGGGRSRSGPKD 235 Query: 241 ---------------------------------------TVSGEMPWYDSNG-LRLTFSP 260 T+ G + G LR S Sbjct: 236 FAGEPALECSGWVKTGGKEARRARYQEGFVPRRLGGRPFTLYGRDYLEERLGDLRFYISA 295 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 F QVN+ + + +A + +Q + VLD +CG G L L+ QA V GVE VP Sbjct: 296 TTFFQVNSAQAEVLYNKAATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGVEVVPEA 355 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKL 379 + ++N+ LN L NV F E + + + ++LDP RAG V+ + + Sbjct: 356 IVDARRNSILNNLANVHFRTGAAEAVLPRLAGKGYRPEVIILDPPRAGCDRRVLAAVATM 415 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 EP R+VY+SCNP+TLARD L +AG+ + +DMFPHT H+E + + Sbjct: 416 EPRRVVYISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVKER 469 >UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=1 Tax=Gloeobacter violaceus RepID=Y3134_GLOVI Length = 457 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 124/451 (27%), Positives = 204/451 (45%), Gaps = 41/451 (9%) Query: 14 RQIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 Q +TV + L + G G+AR +G+ LF+ G +P + E + KK + K+++ + Sbjct: 14 GQTVTVPITALAAGGDGIARLTDGRVLFVAGAVPGDTVEARLVHLKKDHGFGKILQIVQA 73 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIA-DVP 124 SP R CP CG CQ Q Q +K + ++H V VIA P Sbjct: 74 SPHRIEAPCPVAERCGSCQWQWIDYPFQLEAKQRQVREALEHLGGFAEPPVEPVIAQPRP 133 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-- 182 +GYR ++ + + + + +G+ + S IV + CP+ +L+ LL R + + Sbjct: 134 FGYRNKSTFPIGRDARGEPV-IGYYQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQG 192 Query: 183 ---LQAMRHLGHVELV-----QATSGTLMILRHTAP----LSSADREKLERFSHSEGLDL 230 H G + + + T L+ + A + ++RF+ G + Sbjct: 193 WSIYDEKHHRGALRHLGLRIGERTGQRLLTFVVNGQTLSGIKPAAQALMDRFADLVG--V 250 Query: 231 YLAPDSEILETVSG---------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEW 281 L +E T+ G + +G R P F Q+ + + Sbjct: 251 CLNTHTERGNTIFGPQTRCLAGQDFIEEVLDGFRFRIEPTTFFQICTSQAEILARLVARG 310 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 D E V+D +CG+G +LPLA A +VVG+E VE+ +QNAR+NG++N F Sbjct: 311 ADATAEQTVVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIENCRFLAG 370 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 +E + D V++DP R G V++ I+ P+R+VYVSCNPATLARD + Sbjct: 371 TVEALLPDL-----RADIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARDLKR 425 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+ GY + + +D+F T H+E + R Sbjct: 426 LVAGGYCLVGVQPVDLFAQTHHVECVATLER 456 >UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacillus RepID=D2M1T5_BACS4 Length = 469 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 204/457 (44%), Gaps = 34/457 (7%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 S++ + Q +++ + G+GV + +F+PG LP E V + K ++A + Sbjct: 12 SSQLQIKEGQRFPLTIKRMGIDGEGVGFFKRQVVFVPGALPGEEIVCEVAKIKGKFAEGR 71 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM---------KHDV 116 +V+ S +R P CP + CGGCQ QH S + Q + K + + K D Sbjct: 72 IVKIRKPSDDRIAPPCPIYKECGGCQLQHLSYEGQLKGKKDIVRQAFERYTKINLDKVDF 131 Query: 117 SEVIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPK 175 + I + PW YR ++++ + + ++ G S ++D++ C + PQ + Sbjct: 132 HDTIGMEEPWKYRNKSQMQVGH--HQGKVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNV 189 Query: 176 VRAC-----LGSLQAMRHLGHVELVQAT----SGTLMILRHTA----PLSSADREKL-ER 221 V+ + + G + + +G ++ TA P E + +R Sbjct: 190 VKQLAADMNIAPYNERKRTGVLRTIVTRVGFETGEYQVVLVTAKKDIPKVDLFIEAIKQR 249 Query: 222 FSHSEGLDLYLAPD-------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKM 274 + + P E + E + R SPR F Q+N +K+ Sbjct: 250 LPDVTSIVQNINPKKTSLVFGDETIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKL 309 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 A E + +++V+D +CG+G L LA A + G++ + +E + NA+ +G++ Sbjct: 310 YDAAKEAAQLTGKEKVVDAYCGVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIK 369 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPAT 393 N + E + + D V++DP R G +Q +++++P RIVYVSCNP+T Sbjct: 370 NAHYVSGKAEHLLPEWEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPST 429 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 LA++ +AL K GY + L +DMFP T +E + Sbjct: 430 LAKNVDALSKGGYKLKALQPVDMFPQTAQVECVARIE 466 >UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gammaproteobacteria RepID=A5CXB2_VESOH Length = 439 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 149/436 (34%), Positives = 233/436 (53%), Gaps = 12/436 (2%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 +RR + +++ G+G+A K +F+ LP E T ++ A Sbjct: 3 RRRKLEHKTYKLNIESFSHEGRGIAHFEDKIIFVSDALPGELVIANRTFSCAKFEEADAK 62 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIAD----- 122 L + R P+C FG+CGGC Q+ S + Q + KS L ++ Sbjct: 63 EILKPADNRMKPKCDVFGICGGCSFQNLSSEDQIQIKSRWLKKVFARQAKVEPETWLKSL 122 Query: 123 --VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 WGYRR+ARL + Y+ K ++ +GFR+ SS I ++ +C +L P + L + C+ Sbjct: 123 QFQSWGYRRKARLGIRYVAKKDKVLIGFRERKSSFITNMSRCEVLHPSIGEHLEVLANCI 182 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS---- 236 L + E+V + SG +ILRH LS D + L + + Y Sbjct: 183 ERLSIKSSIPQFEVVISESGIALILRHLESLSVKDEKILADCAQELNITFYTQSGGLDSV 242 Query: 237 EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + L+ + + + + + F P DF+QVN +NQ+MV+ A+E L++ D+V+DLFCG Sbjct: 243 KPLDEPTILTYSHSNYNIIMEFLPTDFVQVNFKLNQQMVSLAVELLELNESDKVIDLFCG 302 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +GNFTLP+A A VVG+EG LVE+ + NA N + NV FY +L ++V W K Sbjct: 303 LGNFTLPIARYAKYVVGIEGDLGLVERAKYNAEKNSINNVDFYRSDLCKEVVGFEWFKGK 362 Query: 357 -FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 ++K L+DP+R+GA +++ + KL R+VYVSCNPATLARD+ L+K G+T+ ++D Sbjct: 363 TYNKALIDPSRSGAIEIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLETAGVID 422 Query: 416 MFPHTGHLESMVLFSR 431 MFP T H+ES+ LF + Sbjct: 423 MFPQTSHVESIALFVK 438 >UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4G9_9CHLA Length = 449 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 136/451 (30%), Positives = 207/451 (45%), Gaps = 36/451 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 Q I + + L SFG+GV + G T F+ G LP E + +TE KK Y R K+++ Sbjct: 2 NLQLHQQIDLFIRSLGSFGEGVGSYEGLTFFVEGALPDETVSIQITELKKNYGRGKLLKI 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDV----SEVIA 121 L+ SP+R TP CP F CGGCQ H Q K AL R+ V + Sbjct: 62 LTPSPDRATPPCPIFRQCGGCQLMHLGYPKQLEMKRQIVLNALERIGHLKNISIDPCVSS 121 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 YR + +L + + K L +G S I+ V C I Q E + V L Sbjct: 122 PQELEYRNKIQLPV--MMKPDGLTVGLYARNSHTIIPVDHCLIHCEQGENVYQSVLKLLK 179 Query: 182 SLQAMRH--------LGHVELVQA--TSGTLMILRHT----APLSSADREKLERFSHSEG 227 + L H+ + A TS +L+IL + L + ++ ++ +G Sbjct: 180 QSDIAPYDERTGKGVLRHLLIKSALQTSESLVILVTSQEKCTSLQALAQQIMQACPEVKG 239 Query: 228 L--DLYLAPDSEIL----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + ++ D+ IL T++G+ + SP F QVN + + L Sbjct: 240 VIQNINRKRDNVILGTDWHTLAGKSYIREMICDHHFHISPSAFFQVNPAQAESIYQHVLS 299 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 D+ LD FCG+G TL A QA +G+E VP +E NA+LN + N FY Sbjct: 300 LADLDKTKTFLDAFCGVGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYC 359 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVSCNPATLARDSE 399 ++ E + + D V L+P R G + +K+ +P I+Y+SC+PATLARD + Sbjct: 360 DHAESKI----QSLKDIDVVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLK 415 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 L++ GY I ++ DMFP T H+E++V + Sbjct: 416 ILVQHGYQIEQVTPFDMFPQTAHVETVVKLT 446 >UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSQ3_9GAMM Length = 452 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 159/454 (35%), Positives = 239/454 (52%), Gaps = 25/454 (5%) Query: 1 MAQFYSAKRRTTTRQ-----IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVT 55 M + +R+ +RQ + + + L G+G+A+ GKT F+ G LP E +T Sbjct: 1 MRRHPKKHQRSPSRQSPPPVELELDIERLSFEGRGIAQSQGKTCFVEGALPNERVRAKLT 60 Query: 56 EDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD 115 E ++++ + + SP+R TP CPH+ CGGC QH S Q K +L + Sbjct: 61 EQRRRFNAGYTLDVIKASPQRVTPPCPHYQQCGGCDLQHLSPQAQTEHKRQSLLDTLARQ 120 Query: 116 V---------SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 S V+ GYR RARL+ + + QQ +GFR+AGS I + QCPIL Sbjct: 121 ANIRPHRCLDSAVLNRDGLGYRSRARLACWFDSRRQQYHLGFRRAGSHTIEPISQCPILV 180 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVE--LVQATSGTLMIL---RHTAPLSSADREKLER 221 + L+P +R L + + LGH++ L ++ SG + L + APL + L Sbjct: 181 EPINRLIPHLRDALPQWRLKKRLGHIDAFLNESPSGPQVALCLRLNQAPLDDSKAVML-N 239 Query: 222 FSHSEGLDLYLAPDSEILETVSG--EMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARA 278 F+ + L D + ET+ G ++ +Y +G L+L+ +F Q N G+N++MV A Sbjct: 240 FAQQHNITLAWRDDHRV-ETLHGDSDLTYYLLDGELKLSLGWGEFSQANRGLNREMVRTA 298 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 +E L V P VLD FCG+GNF+L LA A V+G+EG +VEK + NAR NG + F Sbjct: 299 VEQLHVPPGAHVLDAFCGVGNFSLALANGGAKVLGLEGSDNMVEKARHNARDNGFELCEF 358 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARD 397 NL +G LLDP R GA+ + Q++ + E R++Y+SCNPAT +RD Sbjct: 359 KTMNLMHSDGIGRHTLDGIHHALLDPPRDGASELCQRLAREPELQRVLYISCNPATFSRD 418 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +E L+ G+T+ + + D+FPHT H E M LF R Sbjct: 419 AEHLVNGGFTLDTVQLWDLFPHTHHSEVMGLFVR 452 >UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus RepID=A8YU02_LACH4 Length = 450 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 115/449 (25%), Positives = 205/449 (45%), Gaps = 30/449 (6%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 QII + + DL GVA +NG T+F+ LP E + + KK +A AK+ + + Sbjct: 3 KNQIIDLEITDLSYEAMGVAHYNGMTVFVTNALPGEVVSAKILKVKKNFAFAKIEKIKKE 62 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK------HDVSEVIADVPW- 125 SP+R + G H D Q K + L+K +V E +A Sbjct: 63 SPDRVNVKLNQGVQSGLASLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEV 122 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 GYR +A++ + + QL++GF + S D++ + P+++ +L VR L + Sbjct: 123 GYRNKAQVPVREV--NGQLEIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKV 180 Query: 186 MRH--------LGHVELVQA-TSGTLMILRHTAPLSSADREKLE-RFSHSEGLD-LYLAP 234 + + ++E+ ++ ++G +M++ + S G+ L L Sbjct: 181 PAYDEINNNGEVRYLEVRRSKSTGEMMVILVCLHKDFMQLPNVAAEVSQIPGVSGLILNH 240 Query: 235 DSEILETVSGEMPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 + + + G + L+ SP+ F Q+N+ ++ A++ D++ Sbjct: 241 NPKKTNVILGPKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLK 300 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 P+D V+D + G+G L +A +V G+E V ++ + NA+LN + N +Y EE Sbjct: 301 PDDVVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEE 360 Query: 346 DVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 + + + D V +DP R G + +K P +IVY+SCNPATL RD + + Sbjct: 361 IMPRWAKSGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEK 420 Query: 405 GYTIARLAMLDMFPHTGHLESMVLFSRVK 433 Y R+ +DMFP T H+ES+ + R + Sbjct: 421 SYEFNRIDPVDMFPQTPHVESVTVLERTE 449 >UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MPE3_9FIRM Length = 442 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 126/441 (28%), Positives = 201/441 (45%), Gaps = 19/441 (4%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 + V ++ + G +A+ + LFIPGLL E A V +T+ KK YA A+V+ L Sbjct: 2 KKNEEYVVEISGYTTEGFALAKLDSFVLFIPGLLRGEKARVALTKVKKTYAFARVIEILE 61 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA-RLMKHDVS----EVIADVPWG 126 S +R P C +CGGCQ QH + Q K + ++H + I P Sbjct: 62 VSEKRVKPSCSIARLCGGCQLQHMAYQEQLSLKQEIVQIHFLRHQLDLNRIHPILPSPKQ 121 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ-- 184 R R ++ + K Q+GF + S D+V + C + + + V+ L Sbjct: 122 ERYRNKVQVPIQEKDGLAQLGFYRNHSHDVVVYEDCMVETEESNQITHFVKRFLNQHHLT 181 Query: 185 -AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD----------LYLA 233 R+L + Q +M + P + + LE + + Sbjct: 182 SNFRYLFIRHIHQRNEVMVMPIVREYPFEKSKKLALELVKEFPNITSFSYLKNPKETNVI 241 Query: 234 PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 D I E + G+ S + F QVN + + +ALE D+ ED V+DL Sbjct: 242 LDGPIFEVIGPLFLEESLLGMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTVVDL 301 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 +CG G + A A V+G+E VP ++ + NA+LN N+ F+ + ++ K Sbjct: 302 YCGTGTIGILAAKIAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKIVET 361 Query: 354 KNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 K D V++DP R G + +Q I K+EP ++VY+SC+P+TLARD E L G+ + + Sbjct: 362 KESIDVVIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVETVQ 421 Query: 413 MLDMFPHTGHLESMVLFSRVK 433 +D+FP T H+E + L RVK Sbjct: 422 PVDLFPQTVHVECIALIQRVK 442 >UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Cyanobacteria RepID=Q2JP08_SYNJB Length = 464 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 132/458 (28%), Positives = 211/458 (46%), Gaps = 40/458 (8%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARH----NGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 ++ + V L G G+A G+ +F+ +P + +TE K+ Y + Sbjct: 12 PVKPGDLLALEVTALTPQGDGIAHTVGLGQGRVVFVSQAVPGDQVVAQITEIKRNYLVGR 71 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVS 117 + +S SP+R P C CGGCQ QH S Q +K L ++ V Sbjct: 72 IRSLISPSPQRVRPACIVADKCGGCQWQHVSYAQQLATKQQILRDALERIGGLTLPQPVP 131 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + + P YR + + P+ Q L+MG+ + GS +V++ QCP+ +L+ L +++ Sbjct: 132 ILGSQQPLRYRNKVTYPMA-KPEGQPLRMGYYQRGSHRLVNLNQCPVQDERLDVFLREIK 190 Query: 178 ACLGS-----LQAMRHLGHVELV-----QATSGTLMIL----RHTAPLSSADREKLERFS 223 L RH GH+ + + T L+ L R L S ++R+ Sbjct: 191 RDLQETGWSVYDESRHQGHLRHLGLRIGRRTREVLLTLVSCSRRLPHLESWAERWMQRYP 250 Query: 224 HSEGLDLYL--APDSEI----LETVSGEMPW-YDSNGLRLTFSPRDFIQVNAGVNQKMVA 276 G+ L L A + I E ++G + G L F QVN + Sbjct: 251 DLVGVCLNLNSARTNAIFGPETEVIAGRGSLREEFAGFSLWIDSTSFFQVNTEQAEAFFT 310 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 + L+++ E+ +LD +CG+G TL LA +A +GVE +P V + + NA+ NG+ + Sbjct: 311 WIADQLNLRGEETILDAYCGIGTLTLLLAQRAKRAMGVEALPEAVAQARYNAQFNGIASA 370 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVSCNPATLA 395 F+ +E+ + P A D V+LDP R G + + +KL P RIVY+SC+PATLA Sbjct: 371 QFFQGTVEQVLPTLPPA----DIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLA 426 Query: 396 RDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSRV 432 RD + LL G Y + + D FP TGH+E + RV Sbjct: 427 RDLQILLAEGSYRLTQWRAADFFPQTGHVEGVAFLERV 464 >UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DVS0_EIKCO Length = 430 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 165/429 (38%), Positives = 228/429 (53%), Gaps = 19/429 (4%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 T +++ +D G+GVAR +GKT FI G LPQE +T KK + A+ R L+ SP R Sbjct: 3 TATIHSIDHEGRGVARIHGKTTFITGALPQETVAYQITRSKKHHDEAQATRILTPSPYRI 62 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHD---VSEVIADVPWGYRRR 130 P CPH+ CGGC QH ++Q K L RL K + I WGYR R Sbjct: 63 APACPHYSQCGGCTLQHVHSNVQVAYKQRILEDQLQRLGKVRPQYLLPPIYGQAWGYRYR 122 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-L 189 ARLS ++ + +GF+ S IVD++QCPILAPQL L RA L L + + Sbjct: 123 ARLSAHHS--QGRTTLGFQSRSSHRIVDIRQCPILAPQLANQLSNTRALLQQLNRLHTPV 180 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHS--EGLDLYLAPDSEILETVSGEMP 247 +EL + + + L HT L A R L + + S ++L + + + P Sbjct: 181 RTIELHHSPAANSLTL-HTEHLPKAARAHLIQHAQSLPANWHIWLQTPHRPAQPLLPDSP 239 Query: 248 W----YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 L L + P DF QVN N +VARA++ L QP +R+ DLFCG+GNF+LP Sbjct: 240 QLSYSLPEYALTLPYRPGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGLGNFSLP 299 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 +A A V+G+EG P L E+ QNARLN L + F+ +L + FDK+LL Sbjct: 300 IAAAGAQVIGIEGSPELTERASQNARLNHLAERAQFHSADLFQTTEHTVAGWGYFDKILL 359 Query: 363 DPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 DP R+GA ++Q + P RIVYVSCNPAT ARD+ L+ GY +++MFP T Sbjct: 360 DPPRSGAYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVNMFPQTA 419 Query: 422 HLESMVLFS 430 H+E++ F Sbjct: 420 HVETVGCFD 428 >UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desulfobacteraceae RepID=A8ZZY9_DESOH Length = 471 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 124/471 (26%), Positives = 196/471 (41%), Gaps = 52/471 (11%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 Q + + + L G+G+AR +G +F+ LP + +T K +A A+ Sbjct: 6 QPVSPVRKGQAVDLEIETLAFGGRGLARVDGLAVFVDHTLPGDRVSARITRKKSNFAEAR 65 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSE 118 ++ LS SP R P+CP+ G CGGC+ Q D Q K +A ++H V Sbjct: 66 LLEVLSPSPFRVLPQCPYCGHCGGCRLQILDYDKQLDCKHEQVADALRHIGLVENVPVHP 125 Query: 119 VIADVP-WGYRRRARLSLNYLPK-----------TQQLQMGFRKAGS-SDIVDVKQCPIL 165 V+ P WGYR + S +G G+ ++DV C +L Sbjct: 126 VMPADPVWGYRNKMEFSFADRRWLLPEEMEMENIDTSFALGLHVPGTFHKVIDVDACLLL 185 Query: 166 APQLEALLPKVRAC-----LGSLQAMRHLGHVELV----QATSGTLMILRHTAPLSSADR 216 A+L VRA + + H G + M+ TA + DR Sbjct: 186 PEPGNAILGDVRAYARASGVPAYGLKSHQGFWRFLMLRHSVAHDNWMVNIVTA---AEDR 242 Query: 217 EKLERFSH------SEGLDLYLAPDSEILETVSGEMPWYDSNG---------LRLTFSPR 261 L+ + E + + + GE S Sbjct: 243 RLLQPLADLLADRYPEVVSVVNNITARKAGVAQGEYEILLHGAPFISDRLGRFSFDISAN 302 Query: 262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321 F Q N +++ A E+ + V+DL+CG G + L+ A V+G+E + + Sbjct: 303 SFFQTNTRGAERLYTVAREYAGLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCL 362 Query: 322 EKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLE 380 N R N + NV F +++E + + D +++DP RAG V++Q++ + Sbjct: 363 ADAVNNCRTNNVSNVRFVAGDVKETLPRL---DCRADVLVIDPPRAGMHKDVVEQVLAMA 419 Query: 381 PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 P RIVYVSCNPATLARD L +A YT+A + +DMFPHT H+E + + Sbjct: 420 PPRIVYVSCNPATLARDVAMLSEA-YTVAEVQPVDMFPHTPHIECVARLDK 469 >UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12 Tax=Burkholderia cepacia complex RepID=RUMA_BURCM Length = 465 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 158/453 (34%), Positives = 222/453 (49%), Gaps = 27/453 (5%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARH------NGKTLFIPGLLPQENAEVTVTEDKK 59 S + + LD +GV R GK +F+ G LP E + K Sbjct: 12 SKNAPVAPGPAPVLEIESLDMEARGVGRTVTEDGTPGKVIFVEGALPGERVTYSSYRRKP 71 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-------ARLM 112 Y +A VV L S R P+C FG CGGC QH + Q K L A+L Sbjct: 72 SYEQATVVDILRPSVLRTQPKCAFFGTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLR 131 Query: 113 KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEAL 172 V I WGYR RARL++ + K + +GF + SS + D+ C +L P + A+ Sbjct: 132 AETVFAPIHGPSWGYRYRARLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAM 191 Query: 173 LPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL 232 L +R + L + +EL + T ++LR P+++ D L F+ + +L Sbjct: 192 LVPLRRLVEGLSIRDRMPQIELAVGSQVTALVLRVLEPINADDEALLRAFADEHKVQFWL 251 Query: 233 APDSEILETVSGEM-----PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 P T + G+R+ F P DF QVN +N+ +V RAL L + Sbjct: 252 QPKGPDTVTPFYPLDVPLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRD 311 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEED 346 DRVLDLFCG+GNFTLPLA + V+G+EG L + NAR NG+ + TF NL E Sbjct: 312 DRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEV 371 Query: 347 VTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE-------PIRIVYVSCNPATLARDSE 399 A FDK L+DP R GA V + + ++ P RIVYVSCNP+TLARD+ Sbjct: 372 TGDDLRALGAFDKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAG 431 Query: 400 ALL-KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+ +AGY + +++MFP+T H+ES+ LF R Sbjct: 432 LLVHEAGYRLKGAGVVNMFPNTSHVESIALFER 464 >UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18 Tax=Proteobacteria RepID=RUMA_ACIAC Length = 491 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 173/461 (37%), Positives = 237/461 (51%), Gaps = 47/461 (10%) Query: 19 VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + V +D QGVAR +GK +FI G LP E + K + +A + +SP+R Sbjct: 31 LEVTSMDMDAQGVARRPDGKVVFIDGALPFEWVSASTHRKKNNWEQASLTAIHRESPQRV 90 Query: 78 TPRCPHFG----VCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADVP---WG 126 P CPHFG CGGC+ QH V Q K L L K V+ + WG Sbjct: 91 RPGCPHFGLHAGACGGCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWG 150 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR RARL++ ++ K ++ +GF + S I D++ CP+L P + A+L +RA + S+ A Sbjct: 151 YRYRARLAVRHVEKKGKVLVGFHERKSRYIADMEVCPVLPPHVSAMLLPLRALIASMDAR 210 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA---PDSEILETVS 243 +EL T ++LRH PLS AD +L F+ + G+ +L PD+ L Sbjct: 211 DTCPQIELACGDDVTALVLRHLEPLSEADLGRLRSFAAAHGVQWWLQPKGPDTVHLLDEG 270 Query: 244 GEMPWYD--SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 G Y G+ + F P DF QVN +N+ +V RAL LD DRV+D FCG+GNFT Sbjct: 271 GPQLNYALPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLDAGRTDRVIDWFCGLGNFT 330 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLN--------GLQNVTFYHENLEEDVTKQPWA 353 LP+ATQA VVG+EG ALV + ++N R N L TF NL E + A Sbjct: 331 LPIATQAREVVGIEGSEALVARSRENYRKNQDDRPQGQALAPATFVARNLFEMTPEMLIA 390 Query: 354 KNGFDKVLLDPARAGAAGVMQQIIKLE---------------------PIRIVYVSCNPA 392 DK L+DP R GA + + + + P RIVYVSCNPA Sbjct: 391 DGVADKWLVDPPREGAFALAKALADIHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPA 450 Query: 393 TLARDSEALL-KAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 TLARD+ L+ +AGY +++MFPHT H+ESM +F RV Sbjct: 451 TLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFERV 491 >UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4B1_PELCD Length = 434 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 141/430 (32%), Positives = 206/430 (47%), Gaps = 16/430 (3%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I + + L G GV R+ GK +F+P +P ++ + + KK+Y A+ R L S Sbjct: 8 IDDLHIESLAYGGSGVGRYAGKVVFVPLTVPGDHVQCRIVRQKKRYIEARAERVLVASEH 67 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEVIADVPWGY 127 R P CP FG CGGCQ H Q K + + V + WGY Sbjct: 68 RIAPACPAFGQCGGCQWLHLPYAEQCHWKETIFRDFLVRKLDVDSELVRPIVPSPQQWGY 127 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R R +L PK +GF + GS ++ V CPIL P L +R+ + + + + Sbjct: 128 RSRVQLKCLNTPKG--FLVGFYRRGSHYVIPVDHCPILHPLLNQAKDLLRSWIENTRWSQ 185 Query: 188 HLGHVELVQATSGTLMILRH-TAPLSSADREKLERFSHSEGLDLYLA-PDSEILETVSGE 245 + ++L + + H A L+ + S + L++ L+ V G Sbjct: 186 FVSQIDLAVDDQERVRAVVHCLANDVDDFVTHLKPGALSANMGLFVQTGRKHNLQHVCGP 245 Query: 246 ---MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 + D+ LRL + P F Q+N N+ MV + L P RVLDLFCGMGNF+L Sbjct: 246 VELLIEVDTPELRLGYGPGGFAQINLPQNRAMVREVVGTLVSNPPGRVLDLFCGMGNFSL 305 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 P+A A VVGVE +E + NARLN ++NV+F+ T + A D V++ Sbjct: 306 PVARLAQEVVGVEAYLQSIEMARLNARLNEIENVSFFAREAYGAAT-EYGADGAIDLVIM 364 Query: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 DP R+GA V ++++ + P RI+YVSC+P TL RD LL GY + D+FPHT H Sbjct: 365 DPPRSGAYDVARELVTVRPARILYVSCDPPTLVRDLLPLLHNGYRLVWSRPFDLFPHTHH 424 Query: 423 LESMVLFSRV 432 ES+ RV Sbjct: 425 TESITFLERV 434 >UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Bermanella marisrubri RepID=Q1MXP1_9GAMM Length = 448 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 154/432 (35%), Positives = 245/432 (56%), Gaps = 12/432 (2%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 KR + ++ T+ V+DL + QGVAR + +FI G LP E E ++E ++++A AK+ Sbjct: 17 KRSSGPGELKTLVVHDLSNEAQGVARDDDGVVFIEGALPDEKVEALISEQRRRFALAKIK 76 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL----MKHDVSE---VI 120 R + S R P C H+ CGGCQ QH S Q K L +K D + I Sbjct: 77 RIVEASANRVEPLCRHYQRCGGCQLQHLSSQHQIPYKQNNLQHEFASKLKIDSAPWQTPI 136 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 +GYRRRAR+ + Y KT ++ +GFR+ +S + D+ +CP+L +L+ L+P +++ L Sbjct: 137 TGDAYGYRRRARIGIRYRHKTGEVIVGFREQQNSHLTDISECPVLVSELQNLIPSLKSVL 196 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 +Q + + +L+ +++ LR L +D++ L ++ SE + L + D I Sbjct: 197 KKVQKVEVVTQAQLLAGDDLSVVSLRAIKSLPQSDKQILIEWAKSEAVQLDIQGDDAIET 256 Query: 241 TV--SGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + + W++ G+R+ F+ FIQ N VN++MV AL+WL+V+ + VLDLF G+G Sbjct: 257 LFQPNDKTLWFNVAGMRIHFASNSFIQANGRVNEQMVQTALQWLNVKAHETVLDLFAGLG 316 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 NFTLPLA A V VE +V Q NA+ N L NV NL+ + D Sbjct: 317 NFTLPLAQHAKRVCAVELDKKMVADLQHNAQRNELSNVDVQLGNLDN--LDAVERLSAAD 374 Query: 359 KVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 ++LDP RAGAA +M + K + R++YV+C P++L RD+ L+++G+ + ++ +LDMFP Sbjct: 375 VIVLDPPRAGAAVIMPWVAKQKS-RVLYVACEPSSLIRDAAVLVESGFKLDKVVVLDMFP 433 Query: 419 HTGHLESMVLFS 430 T H+E+M LFS Sbjct: 434 QTKHVETMALFS 445 >UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=20 Tax=Cyanobacteria RepID=Y1967_SYNY3 Length = 463 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 127/446 (28%), Positives = 209/446 (46%), Gaps = 35/446 (7%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 ++ +++ L+ G+G+ R N + +F+P P + EV + + K+ YA A++++ L S + Sbjct: 18 VVELTITGLNHQGEGIGRFNERVVFVPDTAPGDRLEVRLVKVKRNYALAQLLKILEPSVQ 77 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIA----DVPWGY 127 R P C CGGCQ QH Q SK AL R+ + GY Sbjct: 78 RTRPSCIVADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGY 137 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS----- 182 R +A L+ KT Q+Q G+ + GS +V++ QCP+ +L LL +V+ + + Sbjct: 138 RNKATYPLSRS-KTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSI 196 Query: 183 LQAMRHLGHVELVQ----ATSGTLMILRHTAP-----LSSADREKLERFSHSEGLDLYLA 233 + G + + +G +++ +A L E LER+ G+ L + Sbjct: 197 YDEEKKQGKLRHLSLRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQ 256 Query: 234 PD-------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQP 286 P+ E + + L + F QVN+G + ++ R + L++Q Sbjct: 257 PEPNNRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQG 316 Query: 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 + ++D + G+G FTLPLA Q + +E V +GQ+NA +N + NV F +E Sbjct: 317 AELLVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETV 376 Query: 347 VTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG 405 + D +LLDP R G A V+++II+ P +I Y+SC P TLARD + L G Sbjct: 377 LPTLSEI---PDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAEG 433 Query: 406 -YTIARLAMLDMFPHTGHLESMVLFS 430 Y I + D FP T H+E V+ Sbjct: 434 FYGITWVQGCDFFPQTAHVECAVILK 459 >UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZT5_DESAS Length = 458 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 125/454 (27%), Positives = 206/454 (45%), Gaps = 33/454 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 II + +ND++ G GV R++G +F+P E T+TE KK +A A +V+ Sbjct: 7 PVKVNDIIELQINDINHQGAGVGRYHGFAVFVPFTCVGEIILATITEIKKSFAAASLVKV 66 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--------VSEVIA 121 L S R+ C + CGGCQ QH+S Q + K + +K + + Sbjct: 67 LKSSDNRQIHSCSEYMKCGGCQLQHSSYAEQLKLKEKFVRDNLKRISGLPDAVVLPTIGM 126 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCP-ILAPQLEALLPKVRACL 180 + PW YR + + L+ K + +GF GS +V+ C I +L + + + Sbjct: 127 ENPWNYRNK--IHLHAGRKNNRTVLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLI 184 Query: 181 GSLQAMRHLGH--------VELVQA-TSGTLMILRHTAP-----LSSADREKLERFSHSE 226 + + H V L +A +G +M++ T S+ RE + + Sbjct: 185 NKYKLEPYNKHSKKGLLRGVMLRKAEATGQVMLVLVTVSGNLPGQSTFTRELVNQCPDIT 244 Query: 227 GLDLYLAPD------SEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARAL 279 + + + + + G+ D L S F Q+N K+ +AL Sbjct: 245 SIIRNINNGNNSLLLGSVNKLIWGKEIIVDKIKDLSFYISANSFYQINPKQTIKLYDKAL 304 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 E+ +++ + VLD +CG+G + + A V G+E + V+ ++NA LN L NV F Sbjct: 305 EYAELKGNETVLDAYCGIGTIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFL 364 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDS 398 +E+ + + N D ++LDP R G V++ I K+ +I+YVSCNP TLARD Sbjct: 365 CGEVEKLLPEFAERNNNVDIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDL 424 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 L K GY I + +DMFP T H+E S++ Sbjct: 425 GLLDKLGYGIIEVQPVDMFPQTSHIEICTFLSKI 458 >UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU49_9GAMM Length = 439 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 139/429 (32%), Positives = 224/429 (52%), Gaps = 15/429 (3%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 + + DL G+GV R +GK FI G LP E E K+ Y A V+ ++ SP Sbjct: 13 PLICEIVDLIHDGRGVGRPDGKACFIDGALPGETVEFRRHNQKRNYDEAHVINIVAASPS 72 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD------VSEVIADVPWGYRR 129 R P C HF CGGC QH Q K L ++ + ++ WGYRR Sbjct: 73 RVEPLCKHFPRCGGCTLQHLDHGAQIAFKQQQLLDSLQRVDLSPEIILPALSAPQWGYRR 132 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 RARL++ K Q+ +GFR AGS I + +C +LA L ++ + + + + L Sbjct: 133 RARLAV-QRAKDGQIIVGFRNAGSRRIEPITECHVLAEPLPEIVAALPGWMVNFPSGIRL 191 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREK-LERFSHSEGLDLYLAPDSEILETVSG---E 245 +EL+ A + + + + S+++RE L + ++ + + + G Sbjct: 192 SEIELLSADNAVAIAIEASRVPSASEREAMLAELTFTDAQLWWKTEKQTAFKRIDGGDQA 251 Query: 246 MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR---VLDLFCGMGNFTL 302 + ++ + L P F+QVN+ +N++M+ + L+ + +R +DLFCG GNF+L Sbjct: 252 LHVVLNDRIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCGSGNFSL 311 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 PLA Q V+G+EG+ LV K Q+NA+ N + N F +L + K D VLL Sbjct: 312 PLAAQFDRVIGIEGLSELVGKAQENAQRNNVSNAEFVVSDLSNWTGMR-KIKGKVDLVLL 370 Query: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 DP R+GAAGVM ++K + ++VY+SC+P+T+ RD + L++AGY + ++DMFPHT H Sbjct: 371 DPPRSGAAGVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEAGYKMIAAGVMDMFPHTAH 430 Query: 423 LESMVLFSR 431 +E++ L + Sbjct: 431 VEAIALLEK 439 >UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae RepID=A4SRV1_AERS4 Length = 456 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 122/439 (27%), Positives = 201/439 (45%), Gaps = 30/439 (6%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + +L G G R + LF+ GLLP E A V +TE K Y KV L S +R Sbjct: 16 IEILELTDKGDGKGRLFDRPLFVEGLLPGEQALVELTEVKPNYLHGKVTELLQPSADRVA 75 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIA-DVPWGYRRRA 131 CP+ CGGCQ + + Q + K A + ++ V+ ++ + P+ YR +A Sbjct: 76 DFCPN-TECGGCQVRPLAYPAQLKLKQALVQSALEQAGLGNTTVNPILGMESPFAYRNKA 134 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-----LQAM 186 + ++ + +GF + S D++ C + L +VR + + Sbjct: 135 QYAVRGCEAGAE--IGFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEV 192 Query: 187 RHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILET 241 H G V + G +++L + E L S L + E Sbjct: 193 NHTGCVRNLMTRKGFKSGELMVVLVTLGEALPFEAELLATLSDLPITTLVQNINDERTNR 252 Query: 242 VSG--------EMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 + G E D + L SP F Q N + + ALE+ ++ + V D Sbjct: 253 ILGANNRVLLGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFD 312 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 ++CG+G +L LA +AA VVG+E V + + ++NA LNG+++ F+ E+ + + Sbjct: 313 IYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQLMPELYA 372 Query: 353 AKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 D V++DP R G V+Q ++ + P R+VYVSCNP TLARD L+K G+ + + Sbjct: 373 QGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFMLDEV 432 Query: 412 AMLDMFPHTGHLESMVLFS 430 +DMFPH+ H+E++ S Sbjct: 433 QPVDMFPHSMHVEAVARLS 451 >UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31DJ1_THICR Length = 407 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 160/425 (37%), Positives = 227/425 (53%), Gaps = 42/425 (9%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + +TV + L G+GV R NGK +F+ +P + AE+ +T + Y AK+VR + S Sbjct: 2 KTVTVKIETLSHDGRGVGRLNGKAIFVEEAVPGDVAEIRITGRQPSYEEAKIVRLIDSSE 61 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGY 127 +R CPH+ CGGCQ QH S+D Q++ K++ + + + Y Sbjct: 62 DRVEAFCPHYETCGGCQLQHLSIDAQRKWKASHFYTALSKAVNMKACQIEAPLVGHDHAY 121 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 RRRARL L ++ + GFR GS++IVD++QCP+L P L L + R + A R Sbjct: 122 RRRARLVLGKNKTDKEARFGFRAKGSNEIVDIEQCPLLTPALNEALNQKRTAVLP-HASR 180 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMP 247 L + +V A +G F + +D P Sbjct: 181 ALKEISVVDADNGI--------------------FWSDQAVDSSTWPS------------ 208 Query: 248 WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ 307 Y NGL L F + F+QVNA +N++MV +AL+WLD+ E RVLDLFCG+GNFTLP+A Q Sbjct: 209 -YGVNGLTLNFPAQGFVQVNAEMNEQMVNKALDWLDLNKEQRVLDLFCGVGNFTLPIAQQ 267 Query: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW-AKNGFDKVLLDPAR 366 VVG+EG LV+ Q NA + TFY +L +DVT Q W K +D+VLLDP R Sbjct: 268 VKEVVGIEGETDLVQMAQHNASRAHCEQATFYQADLFKDVTPQNWFRKQKYDRVLLDPGR 327 Query: 367 AGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 GA + + + +L+ +IVYVSCN +TL RD + L K GY + + M+DMFPHT H E M Sbjct: 328 QGAYQLCKGLGQLKADKIVYVSCNASTLIRDVKELEKQGYQLKKAIMVDMFPHTSHTEVM 387 Query: 427 VLFSR 431 + Sbjct: 388 AQLIK 392 >UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHC6_9NEIS Length = 437 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 153/433 (35%), Positives = 221/433 (51%), Gaps = 22/433 (5%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 + LD +GVA+ NGKT+F+ LPQE A++ +T+DK +A A+V + + SP R P Sbjct: 6 ITSLDYESRGVAKLNGKTIFVNNALPQEIAQIRITQDKAHFAEAQVEQIVQPSPYRRAPA 65 Query: 81 CPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADV---PWGYRRRARL 133 CPH+G CGGC QH Q K L R+ K ++ V PW YR R RL Sbjct: 66 CPHYGDCGGCTMQHVEFTAQVAMKQRVFEEQLQRIGKVQPESLLPPVYGTPWHYRSRTRL 125 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 +++ ++ +G++ S IV + QC +L + L + L + ++ + Sbjct: 126 AVH-TSANGKVVLGYQAKRSHKIVGINQCLLLPEHVSGCLGIIHDALQDMVNVQPKVGIR 184 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPW----- 248 V+ + G + + L S ++ + + P Sbjct: 185 SVEISVGEGVTAVNIVSQKRQPENVLCALSGCLNRGAGGKTVWQVWQQIGNAKPQAVSPH 244 Query: 249 --------YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 GL + F DF Q+N +N+ MVARA+ +LD QP +R+ DLFCG+GNF Sbjct: 245 DAPPLVFRLPEFGLTMPFQLGDFTQINLPLNEIMVARAVRYLDPQPHERIADLFCGLGNF 304 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 TLPLA +AA VVG+EG AL ++ NAR NGL N F +L + A FDK+ Sbjct: 305 TLPLAKRAAEVVGIEGSAALTQRAVANARANGLPNAQFASADLFAATPETLAALGRFDKM 364 Query: 361 LLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 LLDP RAGA V+Q + P RIVY+SCNPATLARD+ L GY A M+++FP Sbjct: 365 LLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLARDAAVLASKGYRFATAGMMNLFPQ 424 Query: 420 TGHLESMVLFSRV 432 T H+E++ +F RV Sbjct: 425 TSHVEAIGVFERV 437 >UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUT8_SYNWW Length = 419 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 135/431 (31%), Positives = 212/431 (49%), Gaps = 35/431 (8%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 + ++ G+GVAR GK +F+P LP E E+ +T+++ ++ARA++V+ L SP R TP Sbjct: 5 IERINHQGEGVARVGGKVVFVPQALPGEVVEIVITDNRARFARAQLVQLLEASPYRLTPL 64 Query: 81 CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIA-DVPWGYRRRARL 133 CPH+ CGGC QHA + + K + ++ V V++ PW YR + Sbjct: 65 CPHYYECGGCAYQHAKYEEELVLKRQVVKDAIQRIAKIATVVEPVLSMPEPWHYRNKVTW 124 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 + K Q+ +GF + S ++ + C +++ ++ L +V+A L Sbjct: 125 HMAATGK-QEPVLGFFREASRQLLPISHCRLISEKMNCLTARVKALLP------------ 171 Query: 194 LVQATSGTLMILRHTAPLSSA--DREKLERFSHSEGL-------DLYLAPDSEILETVSG 244 L+Q +G+ + LR ++ S + L+ + E D + + +SG Sbjct: 172 LIQPATGSEITLRESSLDHSTMLIWKGLQGWPAPEIWAELSAISDSVVVIEKNTCHYISG 231 Query: 245 EMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 D G ++ SP F QVN ++M+ L +D VLD FCG+G+ L Sbjct: 232 PQRLLDKLGQVKFALSPGAFFQVNHCQAEEMIRLILSLVDFS-GKTVLDAFCGVGSIALN 290 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA QA V+GVE + + NA G+ NV F H E V + D ++LD Sbjct: 291 LARQAERVIGVESYEPAIHDARSNAIEAGIYNVEFIHGFCERVVAR---IDEPIDVIVLD 347 Query: 364 PARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 P R+G ++Q ++ P IVYVSCNPATLARD + GY + +DMFP T H Sbjct: 348 PPRSGCKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPIDMFPRTYH 407 Query: 423 LESMVLFSRVK 433 +E++VL SRVK Sbjct: 408 VETVVLMSRVK 418 >UniRef50_A0LDR0 RNA methyltransferase, TrmA family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LDR0_MAGSM Length = 424 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 144/428 (33%), Positives = 221/428 (51%), Gaps = 19/428 (4%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + ++++ L S G G+ H+G +F+P P + E+ + +K++A A++++ + SP R Sbjct: 1 MQITIDKLASGGSGLGFHDGMAIFVPNTAPGDLVEIEIKTKRKRHAHAELIKIIQASPNR 60 Query: 77 ETPRCPHFGVCGGCQQQHASV----DLQQRSKSAALARLMKHDVSEVI----ADVPWGYR 128 P CP + CGGCQ QH + + AL + K + + A GYR Sbjct: 61 CEPICPVYHQCGGCQLQHVNQTTRNTFKAAVVKEALQHIGKFENPPMQPLQSAQPETGYR 120 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 RR L + ++ +GF + S IVD+ CPIL P+L+AL+ +R + L Sbjct: 121 RRCGLKIYWVR--DHAVVGFYQTASKRIVDLPNCPILHPKLDALIHPIRTLVSELSVRER 178 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD---LYLAPDSEILETVSGE 245 L V+L G MIL LS+ D+E L F+H+ +D + ++ +S E Sbjct: 179 LPQVDLSCGDEGVGMILHLLRKLSAKDKEILTTFAHTHKIDQLWIQSGRKEDLTPFISQE 238 Query: 246 MPWYDSNGL-RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 Y +G +L F P DF Q + N+++V + L W+ RVLDLF G+GNFTLPL Sbjct: 239 PLRYSPDGKSQLKFMPGDFTQAHFEQNRQLVEQVLAWIG--QGQRVLDLFSGLGNFTLPL 296 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A Q V G E V++G+ N L+ +VTF +L + + N D +++DP Sbjct: 297 ARQFTRVTGYESYEPAVKRGRSNTTLH--PSVTFKTMDLFSETALKTLPLNQVDAMVVDP 354 Query: 365 ARAGAAGVMQQIIKL-EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 R GA + +QI P IV+VSC+PAT ARD+ L GYT+ ++ LDMFP T H+ Sbjct: 355 PRDGAVNLAKQIKDAGGPATIVWVSCDPATFARDAAILCAGGYTMEQVKPLDMFPMTSHV 414 Query: 424 ESMVLFSR 431 E + LF R Sbjct: 415 EVVALFKR 422 >UniRef50_A1VQF1 23S rRNA (uracil-5-)-methyltransferase rumA n=8 Tax=Burkholderiales RepID=RUMA_POLNA Length = 490 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 161/470 (34%), Positives = 231/470 (49%), Gaps = 60/470 (12%) Query: 19 VSVNDLDSFGQGVA-RHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 ++V LD QG+A R +GK +FI G LP E V K + +A + +S +R Sbjct: 25 LTVESLDIEAQGIAHRADGKVVFIEGALPFEQVTANVYRKKSSFEKATLTAIYRESSQRV 84 Query: 78 TPRCPHFG----VCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWG 126 TP CPHFG CGGC+ QH + Q K L ++ ++ I W Sbjct: 85 TPACPHFGMHTGACGGCKMQHLHIGAQVAVKQRVLEDNLRFIGKVKADNLLRPIEGPAWH 144 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR RARLS+ Y+ K +GF + S+ + D+ +C ++ + +L +R + S+ A Sbjct: 145 YRYRARLSVRYVRKKGTALVGFHERKSAYVADMTECHVVPQHVSDMLVPLRGLISSMDAR 204 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREK----------LERFSHSEGLDLYLAPDS 236 + +EL T M+LRH PLS AD + L+ + S GLD D+ Sbjct: 205 ETIPQIELACGDDLTAMVLRHMEPLSVADLARLRAFAAANAGLQWWVQSGGLDTVKLLDA 264 Query: 237 EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 ++ E G + G+ + F P DF QVN +NQ +V+RAL L VQP +RV+D FCG Sbjct: 265 QVAELSYGLPEF----GITMPFKPTDFTQVNPHINQVLVSRALRLLGVQPTERVIDWFCG 320 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG--------LQNVTFYHENLEEDVT 348 +GNFTLPLAT+A V+G+EG LV + ++N N L+ F NL E Sbjct: 321 LGNFTLPLATRAREVLGIEGSEVLVARSRENYERNKASSHVRPALEATKFVARNLFEMTP 380 Query: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE-------------------------PIR 383 +K L+DP R GA + + + L P R Sbjct: 381 AMLVKDGAAEKWLVDPPREGAFELFKSLAALHQQVVTGVPCDDGIHQQSLALGGWTPPSR 440 Query: 384 IVYVSCNPATLARDSEALLK-AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 IVYVSCNPATLARD+ L++ GY +++MFPHT H+ESM +F R+ Sbjct: 441 IVYVSCNPATLARDAGVLVEGGGYRCTAAGVVNMFPHTAHVESMAVFERL 490 >UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BA92_THEAS Length = 457 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 133/459 (28%), Positives = 212/459 (46%), Gaps = 42/459 (9%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 ++ + ++ S G+GV R F+PG L E V++ K+ YAR++++ LS Sbjct: 3 KVGDVLDLDISSTGSSGEGVGRIGDFVTFVPGALSGERVRVSLETVKRTYARSRLLEVLS 62 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEV----IADV 123 SP+R P CP FG CGGCQ QHA LQ K A+ R+ + V ++ + Sbjct: 63 PSPDRRDPPCPLFGCCGGCQLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEPCEMSPL 122 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 WGYR +A + + + MGF + S ++V ++ CP+++ ++ ++ +R L Sbjct: 123 QWGYRNKAIVPVRSQGRGWG--MGFYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPR 180 Query: 183 -----LQAMRH-------LGHVELVQA-TSGTLMILRHTAPLSS----ADREKLERFSHS 225 L R L V + +G L++ +D E L R Sbjct: 181 IRGGLLSPYREGDRPSGSLREVVVRHGMRTGELLVSLVMRQDPRGRLLSDLEGLFRLLEG 240 Query: 226 EGL----------DLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMV 275 G+ D D + + + W G+RL++ F QVN ++M Sbjct: 241 LGVVGLSVFRNRRDANFVWDGDFAWGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMF 300 Query: 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335 ++ LD VL+L+ G+G+ T +A VV VE P+ VE ++N ++NG+ Sbjct: 301 QHVVDLLDETGARDVLELYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHG 360 Query: 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATL 394 VT E+ + F V+LDP R G V++ ++ ++YVSCNPATL Sbjct: 361 VTPLLGAAEDVLGDL---GGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATL 417 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 ARD L + GY + R+ DMFP T H+E + L SRVK Sbjct: 418 ARDLMLLSQGGYVLRRVRPFDMFPQTCHVECVTLMSRVK 456 >UniRef50_B2UQE8 RNA methyltransferase, TrmA family n=4 Tax=Verrucomicrobia RepID=B2UQE8_AKKM8 Length = 407 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 118/429 (27%), Positives = 187/429 (43%), Gaps = 47/429 (10%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 + Q + + ++ L + G G+ R +G +F+P LP + + V + + Y+ A +V ++ Sbjct: 15 SYHQELELDIDALSNAGDGIGRVDGWVVFVPFALPGDRVKARVWRNDRNYSSADLVEVIN 74 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV-------SEVIADVP 124 SP+R P C FG CGGCQ QH S D Q K+ +A L++ V + Sbjct: 75 PSPDRVEPGCRLFGTCGGCQYQHFSYDRQLLWKTRQVADLLRLQAGLELPVNPAVASPRQ 134 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRACLGSL 183 + YR + + + + +GF KAGS D+VDV QCPI + LP R + Sbjct: 135 YHYRSKITPHFDRPKEGGKPAIGFLKAGSRRDVVDVPQCPIAMECINEALPLARKSVYQA 194 Query: 184 QAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVS 243 A G L++A+ GT++ ++ + ER Sbjct: 195 AARFKRGATILLRASEGTVI--------TNNNAVACERV--------------------- 225 Query: 244 GEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 L F DF Q N + + + E+ ++D +CG G F L Sbjct: 226 --------GDLEFHFLAGDFFQNNPFILPLFTDYVAQQASMDGEEFLVDAYCGSGLFALS 277 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA + V+GVE + + NAR NG+++ F + + + V++D Sbjct: 278 LAKKFKKVLGVEVSETSADWARSNARSNGIEHAEFLAADAGAIFARVDFPAEK-TAVVID 336 Query: 364 PARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 P R G A + Q+ P ++VYVSCNPAT RD KAGY + + D+FP T H Sbjct: 337 PPRKGCSAEFLAQLFAFGPGKVVYVSCNPATQIRDLAEFDKAGYFVTAVQPFDLFPQTKH 396 Query: 423 LESMVLFSR 431 LE +V + Sbjct: 397 LECVVTLKK 405 >UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRP4_DESVM Length = 479 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 194/472 (41%), Gaps = 52/472 (11%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 ++ ++V+ L + G+ V RH G+ +F+ G LP + +T K+++A A + L Sbjct: 6 PRPGDLLELTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDAVL 65 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIA----D 122 SP + P C HFG CGGC Q Q R K AL R+ + V+ Sbjct: 66 EPSPVQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASP 125 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC--- 179 G+R + + + + QL +G R+ S +VD+ +C + P ++ VR Sbjct: 126 AERGFRNKMEFAFSQD-RDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARE 184 Query: 180 --LGSLQAMRHLGHVELV---------------------QATSGTLMILRHTAPLSSADR 216 L R G + Q T G +++ Sbjct: 185 SGLPGWDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAA 244 Query: 217 EKL--------ERFSHSEGLDLYLAPD------SEILETVSGEMPWYD-SNGLRLTFSPR 261 + + RF G+ L D E + V GE + G L P Sbjct: 245 QAVSRLAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPD 304 Query: 262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321 F Q N + A P+D V DL+ G+G L LA A +V G E P V Sbjct: 305 SFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAV 364 Query: 322 EKGQQNARLNGLQNVTFYHENLEEDVTK-QPWAKNGFDKVLLDPARAGAAG-VMQQIIKL 379 + NA N + N +F ++ + + +P V++DP RAG V++ + Sbjct: 365 NDARANAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAH 424 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +P RIVYVSCNPAT+ARD+ GY + +D+FPH+ H+E + L +R Sbjct: 425 QPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476 >UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B1C3C0_9FIRM Length = 449 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 121/442 (27%), Positives = 209/442 (47%), Gaps = 35/442 (7%) Query: 20 SVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETP 79 DL GQGV + + T F+ G+L E ++ V + K YA A+++ + S R P Sbjct: 10 ECIDLTHDGQGVVKVDNFTYFVKGMLVGETGKLKVIKVLKNYAIARLIELDNVSKYRVEP 69 Query: 80 RCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSE---VIADVPWGYRRRAR 132 +CP F CGGCQ QH + + Q K L R+ V ++ + PW YR + + Sbjct: 70 KCPVFKPCGGCQLQHLNQEGQMLFKTKRVKDCLERIGNCFVEVNDCLMMEDPWYYRNKVQ 129 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL-----QAMR 187 + + K +L GF K S++I+ +C I + +V+ + + Sbjct: 130 MPIGV--KGNRLVTGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKYKIYPYDKLS 187 Query: 188 HLGHVELVQATSG------TLMILRHTAPLSSADR---EKLERFSHS--------EGLDL 230 H G+++ + G L+++ + +++ D+ E + FS +D Sbjct: 188 HQGNIKHILTKHGYHSNEIMLVLISYLDKINNVDKLVAEITKEFSMIKTVIQNINHRIDN 247 Query: 231 YLAPDSEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 + D EI+ + G+ YD+ R S + F QVN +K+ +A+E+ + +D Sbjct: 248 VILGDKEII--LFGDGFIYDNLLDNRYKISLKSFYQVNPIQVEKLYQKAIEFAKLSNDDV 305 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 VLD +CG+G L LA V GVE V + + NA+LN ++NV F ++ + + + Sbjct: 306 VLDAYCGIGTIALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKYMIE 365 Query: 350 QPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 D V +DP R G + +I+ +P +I+Y+SC+ AT ARD + L + Y + Sbjct: 366 LVNNNIHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEFNYQV 425 Query: 409 ARLAMLDMFPHTGHLESMVLFS 430 +DMFPHT H+E+++ Sbjct: 426 DMCQPVDMFPHTTHIENIIRLE 447 >UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W3B9_NEICI Length = 461 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 149/434 (34%), Positives = 236/434 (54%), Gaps = 19/434 (4%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 ++ ++ LD G+GVA+ GKT+FI G LP E +T+ KKQ+ A+ V S Sbjct: 15 EVNVAEISALDYEGRGVAKVGGKTVFIKGALPSERVGFQITKQKKQFDEAETVAIFKVSD 74 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADV---PWGY 127 ER P+C +F CGGC QH S Q K L R+ K +++ + W Y Sbjct: 75 ERTVPQCRYFERCGGCSLQHISPTAQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHY 134 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R RAR S++ L K+ +L++GF+ ++D+V + C ++ + LP +R L L Sbjct: 135 RDRARFSVS-LDKSCRLKLGFQAKKTNDVVGISSCMLIPKPVSDKLPAIRELLQDLAEGG 193 Query: 188 HL-GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE---GLDLYLAPDSEILETVS 243 + E + + T++ + + L D ++ ++ SE ++L + ++ E Sbjct: 194 SIARFAEFYRGSEITVLNIAFKSKLRQNDESRIRQWFDSELSDDWQIWLQIEGKVSEPFY 253 Query: 244 GE-----MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + G+ + F P DF Q+N N+ MV+RA++ LD++ +RV DLFCG+G Sbjct: 254 PQKDTILKYTLPEFGIEMPFRPGDFTQINTDTNRLMVSRAIKMLDIRQGERVADLFCGLG 313 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGF 357 NF+LP+A ASVVGVEG LV + +QNARLNG F NL + + F Sbjct: 314 NFSLPIAKSGASVVGVEGAENLVGRARQNARLNGCGGQTDFIAANLFDCTENTVASWGKF 373 Query: 358 DKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 DK+L+DP R+GA V++ + P +IVYVSCNP+TLARD+ L++ GY + ++ +++M Sbjct: 374 DKMLIDPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYILGQVGIMNM 433 Query: 417 FPHTGHLESMVLFS 430 F HT H+ES+ +F Sbjct: 434 FAHTSHVESIAVFE 447 >UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC40A Length = 486 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 155/450 (34%), Positives = 245/450 (54%), Gaps = 22/450 (4%) Query: 3 QFYSAKRRTTTRQ---IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59 +F +K T + TV++ DLD G GV R +F+ G L E ++ V KK Sbjct: 39 RFGKSKNAADTSESQNPNTVTIEDLDWMGNGVVR-GNPMVFVEGALVGETCDIEVVSSKK 97 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS-- 117 + A+ S S R+ P CP F CGGCQ QH D + AL +M+ +S Sbjct: 98 KVINARATNIHSPSDARQAPFCPVFDACGGCQLQHIKPDAALEQRDRALKVMMERQLSMK 157 Query: 118 ------EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 + P YRR+ARL+++ Q+++GFR+A SS++++ + CPIL L Sbjct: 158 PHVWQAPLAGPRP-QYRRKARLAIDARN-PNQIKLGFREANSSNVINAETCPILVDPLSK 215 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE----- 226 L+ +R L ++ RH+GH+ L+ + + ++++HT L + + + ++ Sbjct: 216 LIGPLRDALTGFESARHIGHISLIAGDNTSHLVIKHTKALEAELIDAVSELVNTSSSVGV 275 Query: 227 -GLDLYLAPDSEILETVSG--EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 G++L L + +V +M N ++ S DFIQ+N VN+KMV +A+ WL+ Sbjct: 276 CGIELKLENKQAQIRSVGRGTDMVMNTVNSCSISPSANDFIQINKVVNEKMVNQAIGWLN 335 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 +P +RV D F G+GNFTLP+A A V VEGV +V + + NA+ G++NV + H +L Sbjct: 336 PEPNERVADWFSGLGNFTLPIAKLGAKVQAVEGVAEMVRRAKDNAQQQGIENVEWLHLDL 395 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 + + + GFDKVLLDP+R GA V ++K P IVYVSCNP+T +RD++ L+ Sbjct: 396 ADKTNVEASLQLGFDKVLLDPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLID 455 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 GY + + + +MFP T H+E M LF+R + Sbjct: 456 GGYEMEKAGVAEMFPFTHHMEMMALFTRKQ 485 >UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D234_PELTS Length = 470 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 122/465 (26%), Positives = 205/465 (44%), Gaps = 44/465 (9%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + I + ++ ++ G+GV R+ G +F+PG P + V++ KK YARA+++ Sbjct: 8 PVQKNERIVLQISGINHSGEGVGRYRGLAVFVPGAAPGDQVVAEVSDVKKNYARARLLGI 67 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIA---- 121 + SP R P C F CGGC+ QH + Q K +LAR+ + +V A Sbjct: 68 KTASPARREPECGRFSRCGGCRLQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGM 127 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIV--------DVKQCPILAPQLEALL 173 + PW YR + + P ++ +GF + G+ ++ C ++ +L L Sbjct: 128 EHPWHYRNKVHFQVEERP--DKIALGFYEEGTHNLTAFFNEGACPGTGCLLVDDELNKLA 185 Query: 174 PKV------------RACLGSLQAMRHLGHVELVQAT-SGTLMILRHTAP-----LSSAD 215 + R L + R H+ L + +G +M + T + Sbjct: 186 ALIEKLLNRHRGPFGRRILPQKRQSRFFRHIVLRKGFFTGEVMAVLVTGSGEWPGEKAFV 245 Query: 216 REKLERFSHSEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNA 268 +E L L + + ++G D G L SP F QVN Sbjct: 246 KELLSLRPGLVSLVRNINDGPPGVLFGKKSRCLAGREHIKDRLGHLIFRISPSSFYQVNP 305 Query: 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA 328 + + ++ + + V+D + G+G+ L LA +A V G+E +P V ++NA Sbjct: 306 VQTLVLYNKVQQYAALTGRETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNA 365 Query: 329 RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYV 387 LN + N F +E + + V+LDP R G V++ +++++ R+VYV Sbjct: 366 ALNKITNAEFLTGKVESLIPILAAQGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYV 425 Query: 388 SCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 SCNPATLARD GY + + +DMFP T H+E +VL SR+ Sbjct: 426 SCNPATLARDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSRL 470 >UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU44_9GAMM Length = 440 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 160/442 (36%), Positives = 230/442 (52%), Gaps = 18/442 (4%) Query: 6 SAKRRTTTRQIIT-VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 + + + V + LD G GVAR +GK LF+ G LP E V E +Y RA Sbjct: 1 MTRPKPLRDMPVERVHITGLDGEGTGVARVDGKVLFVAGALPGECVRVRRYEGTPRYDRA 60 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVS 117 +VV S +R TP C H GVCGGC QH Q K L ++H + Sbjct: 61 RVVEVERASSQRVTPPCAHAGVCGGCSLQHLEPGAQIAVKQRHLEDQLQHIGRVRPARIL 120 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 I YR +ARLS+ +PKT+ +GFR+ SS + ++ CP+L P++ + +R Sbjct: 121 PPIQGPSLHYRSKARLSVR-VPKTRGALVGFREYHSSFVAAMESCPVLDPRVGERILDLR 179 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS- 236 A + LQ + E+ + ++ILRH LS +D L+ F+ + GL + L Sbjct: 180 ALVARLQRPAAIPQWEIACTDAHAVLILRHLDALSRSDLRLLQGFADAHGLRILLQGGGP 239 Query: 237 EILETVSGEMPW-----YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 E L+ + GE LRL F P FIQVN +N +V RA+ L +P + ++ Sbjct: 240 ESLQALPGEDVPELEYALPEFDLRLRFQPLGFIQVNPWINPVLVRRAMALLAPEPGEEIV 299 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQ 350 DLFCG+GNFTLP+A A +GVEG LV + + NA LNGL F +L + Sbjct: 300 DLFCGLGNFTLPMARLGARALGVEGDTRLVAQARFNAELNGLAARAHFIAADLTQTALAD 359 Query: 351 PWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYTIA 409 G K+L+DP R+GA +++ I R+VYVSCNP TLARDS L+ + G+ + Sbjct: 360 LPGAAGVRKMLIDPPRSGAIEILKGI-GPALRRLVYVSCNPDTLARDSAYLVQQQGFRLE 418 Query: 410 RLAMLDMFPHTGHLESMVLFSR 431 +++MFPHT H+ES+ LF+R Sbjct: 419 AAGIVNMFPHTAHVESVALFTR 440 >UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXR9_DICNV Length = 424 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 156/422 (36%), Positives = 219/422 (51%), Gaps = 15/422 (3%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 V+V DLD G+GVA+ +G+ +FI G LP E T KKQ+ A V + SP+R Sbjct: 7 VTVFDLDYQGRGVAKIDGQVVFIEGALPDETVTFCKTSAKKQFIEAVVDEIIEPSPQRVA 66 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEV---IADVPWGYRRRA 131 PRCP + CGGC QH Q K L RL V +A W YRRRA Sbjct: 67 PRCPFYDRCGGCALQHWHSQEQLLGKQKLWLTQLQRLGGAQPEHVLLPLAGKEWRYRRRA 126 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGH 191 RL+++Y + + +GF+ S D+V V C IL L A LP + L +L ++ + Sbjct: 127 RLAVHY--ENDVIAVGFKAKRSHDVVAVNDCLILQEHLAAALPLLPDFLRALLPVK-VDE 183 Query: 192 VELVQATSGTLMILRHTA-PLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYD 250 + L + LR LS A EK +++ G L + L ++ + Sbjct: 184 ILLTAGEKVAALTLRTKKRALSPAWGEK---WANLAGAHWQLWENDRCLFGEPNDLYYQP 240 Query: 251 SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAAS 310 +G+ L F+P DFIQVNA VN+ ++ L WL + VLDLF G+GNF+LPLA + A Sbjct: 241 ISGVTLHFTPDDFIQVNASVNEALIQTVLAWLAPLEKSEVLDLFSGLGNFSLPLAYKGAR 300 Query: 311 VVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 V VEGV A+V++G + A L + +L Q + LLDP RAGA Sbjct: 301 VTAVEGVRAMVQRGAKMAAEQQLSSRLEMQCMDLFSVSAAQMKSWQSAKSWLLDPPRAGA 360 Query: 370 AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 V+Q + K P +IVYVSCNPATLARD L G+ + R +++MF H+ H+ES++L Sbjct: 361 HAVVQALPKKFPEKIVYVSCNPATLARDVAILQSKGFHLERGQVVNMFAHSAHIESVILM 420 Query: 430 SR 431 +R Sbjct: 421 TR 422 >UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=12 Tax=Chlorobiaceae RepID=Y009_CHLTE Length = 483 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 123/473 (26%), Positives = 198/473 (41%), Gaps = 49/473 (10%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLL-PQENAEVTVTEDKKQYARAKVV 67 R II +++ D + + G + + G+L P + + + K +Y A+ + Sbjct: 11 RYRKGDIIELTITDHAEKDKCFGKTTEGMGVMVSGILAPGDRVSAQIYKVKSRYLEARAI 70 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEV---- 119 L SP+R P CP FG CGGC+ H S + Q R K + +L + + +V Sbjct: 71 EVLEASPDRVEPVCPVFGSCGGCKWMHVSYEAQLRYKHKKVTDSLEHIGGFESPDVRPVL 130 Query: 120 IADVPWGYRRRARLSL-------------NYLPKTQQLQMGFRKAGSSD-IVDVKQCPIL 165 A YR + S + L K + +GF G+ + ++D+ C + Sbjct: 131 AAPDALHYRNKVEFSCSNMRYLLQSEIDSDQLAKPKTFALGFHAPGNFEKVLDLDTCYLA 190 Query: 166 APQLEALLPKVRAC-----LGSLQAMRHLGHVELV----QATSGTLMILRHT----APLS 212 + +L +R L A H G++ + LM+ T L Sbjct: 191 KECMNRVLNVLRDFAIERGLEPYAAKAHEGYLRNLMLRYSERHEQLMVNIVTSWYDKALM 250 Query: 213 SADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY---------DSNGLRLTFSPRDF 263 A +E+LE + + L + +GE + L S F Sbjct: 251 QALKERLEAAMPEQQMTLLNNVTTRKNTVATGEQEYVISGDGYVTERLGDLDFRISANSF 310 Query: 264 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK 323 Q N + + + + + PED V DL+CG G TL LA +G+E V + V+ Sbjct: 311 FQTNTRQAETLYDQIIAVGGITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKD 370 Query: 324 GQQNARLNGLQNVTFYHENLEEDVTKQPWAK--NGFDKVLLDPARAGAA-GVMQQIIKLE 380 + NA LNGL N F+ +L+ Q + ++ DP RAG + ++KL+ Sbjct: 371 AEMNAELNGLSNTVFFQADLKNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQ 430 Query: 381 PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 P RIVYVSCNP LARD + + GY + +DMFP T H+E++ F R + Sbjct: 431 PERIVYVSCNPDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFERAE 483 >UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desulfuromonadales RepID=Q3A1Z9_PELCD Length = 489 Score = 383 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 125/453 (27%), Positives = 199/453 (43%), Gaps = 32/453 (7%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 RR + ++I V+++ L+ G G+ R+ GK + + G LP E V V + ++ + R Sbjct: 32 RRKPSAELIEVTIDQLNDDGIGIGRYQGKEVLVAGSLPGEKVCVAVEHEGQRRIIGQFRR 91 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHDVSEVIA 121 L+ SP R+ CP C GC Q K + + D+S ++A Sbjct: 92 LLTKSPARKPSPCPSLRDCQGCSLMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILA 151 Query: 122 -DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + P GYR A+L++ + ++ +G + GS ++ D+ CP+ P + ++ VR + Sbjct: 152 AEEPLGYRTSAKLAVAR--RNGRIVIGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEI 209 Query: 181 GSLQA-------MRHLGHVELVQAT--SGTLMILRHTAPLSSADREKLERFS-------- 223 R L L++ + +G M+ TA L ++ Sbjct: 210 ARQDIYLYNPVTRRGLLRYLLIKVSPATGKAMVTFVTAQREYKRITALAKWVARKIPEVV 269 Query: 224 ----HSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 + + E L V + +RL SP F QVN ++ A Sbjct: 270 SVQQNVNASSGNVIMGRETLRMVGQPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALVR 329 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 W ++ + LDL+CG+G L LA A V+GVE V V QQNA +N L N F Sbjct: 330 RWAALESHEFALDLYCGIGGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFL 389 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDS 398 + E + +L+P R+G V+Q + +L+P I+YVSCNP TLARD Sbjct: 390 AGDTAELLQDLIVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARDL 449 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L K GY A + +DMFP T H+ES+ + Sbjct: 450 AELQKLGYRTAEIQPVDMFPQTAHVESVARLVK 482 >UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E02 Length = 456 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 129/453 (28%), Positives = 201/453 (44%), Gaps = 33/453 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 K+R + ++++DL G GVARH G LF+ G +P + VT+ K+ Y A V Sbjct: 9 KQRPDRFAELELTIDDLAFGGNGVARHEGYVLFVHGAIPGDRVRAKVTKTKRDYGEAITV 68 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADV 123 L SP+R P H G Q + Q KS AL R+ K E+ V Sbjct: 69 DVLEPSPDRIAPVADHP----GAPWQILPYERQLEIKSKQVDDALRRIGKLGGFELEPIV 124 Query: 124 P----WGYRRRARLSLN--YLPKTQQLQMGFRKAGSSD-IVDVKQCPILAPQLEALLPKV 176 P W YR + S + +L GF G D IV + C + + + A+ +V Sbjct: 125 PALETWRYRNKLEYSFGTEGTAERGELIFGFHAPGEWDRIVPIADCMLASERGNAVRDQV 184 Query: 177 RAC-----LGSLQAMRHLGHVE---LVQAT-SGTLMILRHTAPLSSADREKLERFSHSEG 227 A L + G + + + +G + T P DRE +G Sbjct: 185 LAFCREQGLTAYDRRTRRGFLRNCVIREGRRTGQFQVRLVTMP-GELDREAFAEAVDCDG 243 Query: 228 LDLY-------LAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 L + + + + NG+ SP F QVN + +K+ A A + Sbjct: 244 LLWTQFDGLGETTAEGDTELIAGSDYLEEELNGMSFRVSPNAFFQVNTEMAEKLYALAGD 303 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + + +R+ DL+CG+G L +A +A + G+E + + NARLN + N F+ Sbjct: 304 YASLAGFERLYDLYCGIGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFA 363 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSE 399 ++ + D V++DP RAG V+++II P R+VY+SCNP TLA + Sbjct: 364 GDVRTALRLLVDTAGSPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGA 423 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 L +AGY + ++ +DMFP T H+E + LF RV Sbjct: 424 QLAEAGYVLRKVRPVDMFPQTPHIECVALFERV 456 >UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzyme n=18 Tax=Firmicutes RepID=Q03VV3_LEUMM Length = 464 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 208/465 (44%), Gaps = 34/465 (7%) Query: 1 MA---QFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTED 57 MA + Y K Q I +V D+ G GV + + +F+ +P E V+VT+ Sbjct: 1 MAKANRVYKTKAPVAKNQEIEATVIDITYQGMGVVKVDNFPIFVVDAIPGEIVRVSVTKV 60 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--- 114 K YA +V RR+ +S R G + + Q K + L K Sbjct: 61 LKSYAFGRVTRRIQESENRVQNANKIAITTGIAPLANLKYEAQLAFKQHQIEELFKKVNV 120 Query: 115 --DVSEVIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 DV+ I + P GYR +A++ + + +L+ GF + GS +V ++ I P+++ Sbjct: 121 DVDVAPTIGMENPTGYRNKAQVPVQMI--NGKLETGFYRRGSHRLVPIEDFYIQDPKVDE 178 Query: 172 LLPKVRACLGSLQAMRHL-----GHVELVQATSG------TLMILRHTAPLSSAD--REK 218 + R L L + G + + A G ++I+ +T L ++D EK Sbjct: 179 AVRITRDILRELGVSAYEEETKKGVIRHIMARRGYYSHELMVVIITNTKKLPNSDLIAEK 238 Query: 219 L-ERFSHSEGLDLYLAPDS------EILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGV 270 L + + + + + ET+ GE +D G P F QVN Sbjct: 239 LSAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQLMGKDFVIGPNSFYQVNPQT 298 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 + A A E +++P D V+D + G+G TL +A + + GV+ V +E ++NA+ Sbjct: 299 TSTLYALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVEGAIEDAEKNAKN 358 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSC 389 N + N F + E + K + V +DP R G ++ + + P + VY+SC Sbjct: 359 NQITNAEFVLADAPEQMAKWADEGLKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISC 418 Query: 390 NPATLARDSEALLKAGYTIA-RLAMLDMFPHTGHLESMVLFSRVK 433 NPATLARD+ +L AG+ I + LD FP T H+ES+ +F + + Sbjct: 419 NPATLARDAVQILAAGFEIEGAVQPLDQFPQTTHVESITVFKKAE 463 >UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J1B5_COMTE Length = 519 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 161/471 (34%), Positives = 231/471 (49%), Gaps = 58/471 (12%) Query: 19 VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + V +D QGVAR +GK +FI G L E K + A + +S +R Sbjct: 48 LEVLSMDMDAQGVARKPDGKVVFIDGALTGEIVSANTHRKKNNWEAATLTEIHRESSQRV 107 Query: 78 TPRCP----HFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWG 126 TP CP H G CGGC+ QH V Q K L + H + I WG Sbjct: 108 TPGCPNFGLHAGACGGCKMQHLHVAAQVAIKQRVLEDNLWHLAKVKPETLLRPIEGPAWG 167 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR R+RLS+ Y+ K ++ +GF + S I D++ C IL P ++A+L +RA + S+ A Sbjct: 168 YRFRSRLSVRYVAKKGKVLVGFHERKSRYIADMEVCKILPPHVDAMLMPMRALIASMDAR 227 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP---DSEILETVS 243 +E+ T ++LRH PLS AD+++L F+ + + +L P D+ L Sbjct: 228 ETCPQIEVACGDHVTALVLRHLEPLSDADKQRLRDFAAEQNVQWWLQPKGPDTVHLMEEG 287 Query: 244 GEMPWYD--SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 G Y G+ + F P DF QVN +N+ +V R+L LD + ++RV+D FCG+GNFT Sbjct: 288 GTQLSYGLPDFGITMPFKPTDFTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFT 347 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNG--------LQNVTFYHENLEEDVTKQPWA 353 LP+AT A V+G+EG LV++ +N N L + +F NL E A Sbjct: 348 LPIATMAREVLGIEGSETLVKRSHENYAANNVTRSEDDKLASTSFVARNLFEMTPAMLIA 407 Query: 354 KNGFDKVLLDPARAGAAGVMQQIIKLE--------------------------------P 381 DK L+DP R GA + + + + P Sbjct: 408 DGNSDKWLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFP 467 Query: 382 IRIVYVSCNPATLARDSEALL-KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 RIVYVSCNPATLARD+ L+ +AGY +++MFPHT H+ESM +F R Sbjct: 468 KRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 518 >UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RXM8_ALTMD Length = 482 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 154/443 (34%), Positives = 242/443 (54%), Gaps = 18/443 (4%) Query: 3 QFYSAKRRTTTRQIIT-----VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTED 57 +F +K+ +++ +LD GQGVAR F+ G LP E ++ V Sbjct: 39 RFKKSKQSKEHNTAQDANNNAITIQELDWMGQGVAR-GATMYFVEGALPGETCDIEVVSS 97 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS 117 KK+ AK + S R+ P CP F CGGCQ QH D + AL +M+ +S Sbjct: 98 KKKVVSAKTISIQGPSELRQPPFCPVFEACGGCQLQHIDADAALAYRDNALKIMMERQLS 157 Query: 118 --------EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQL 169 ++ P YRR+ARL+++ +++GFR+A S+ +V++ CPIL L Sbjct: 158 IGSGVWQAPLVGPRP-QYRRKARLAIDARNPDN-IKLGFREANSNKVVNLDTCPILVNPL 215 Query: 170 EALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD 229 + +R L + RH+GH+ L+ + ++++HT L A E ++ F+ + GLD Sbjct: 216 STAIGPLRNALEGYDSARHIGHISLIAGDNRAQVVIKHTKALEDALIETVDAFAKALGLD 275 Query: 230 LYLAPDSEILETVSGE--MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + L L +V + + +G ++ S DFIQ+N VN+KM+ +AL WLD +P Sbjct: 276 VVLENKQGRLRSVGEAQGLIMHTVDGCSISPSANDFIQINKVVNEKMINQALVWLDPRPN 335 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 +R+ D F G+GNFTLP+A + A V +EGV +V + + NA+ G++NV + H +L Sbjct: 336 ERIADWFSGLGNFTLPIAKKGALVQAIEGVAEMVLRAKDNAQQQGIENVEWLHLDLANKA 395 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 + + GFDKVLLDP+R GA V ++K P IVYVSCNP+T +RD++ L+ GY Sbjct: 396 NVEASLQQGFDKVLLDPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLINGGYE 455 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 + + + +MFP T H+E M LF+ Sbjct: 456 MEKAGVAEMFPFTHHMEMMALFT 478 >UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I245_DESAP Length = 465 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 127/450 (28%), Positives = 199/450 (44%), Gaps = 38/450 (8%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + + L G+GV R G +F+P ++P E V +T + +AR ++V L S R Sbjct: 14 EIEITGLSHVGEGVGRRQGLVMFVPLVVPGERVRVEITAVGRTFARGRLVEVLERSRTRV 73 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVI----ADVPWGYRR 129 P C FG CGGC H Q R K AL RL V + P YR Sbjct: 74 EPGCALFGDCGGCHLLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEPRHYRN 133 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQ------CPILAPQLEALL-------PKV 176 +A ++ + +L +GF GS + C ++ L + + Sbjct: 134 KAHFHVSRD--SGRLALGFLARGSHRVTCFVDADGGSGCLLVQRDLLRVAARAAALLESL 191 Query: 177 RACLGSLQAMR-HLGHVELVQA--TSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 R L + R +L ++ L +A T +++L +RE ER + E + + Sbjct: 192 RVPLYDWETQRGYLRNLLLRRAAATGEIMLVLVTGRQNWPGEREFAERLTAEEPGVVSVI 251 Query: 234 PDSEILET-----------VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 + LET GL+ P F QVN +K A + Sbjct: 252 RNVNALETRELLGPENRVRAGEPAITEHLGGLKFRIGPASFFQVNPEQAEKTYEIARLFA 311 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 + ++ V+D + G+G L LA++A SV+G E +PA V Q+NA NG++NV F Sbjct: 312 GLTGKETVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGA 371 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 +E+ + + D +LDP R G ++ + +L P R+VYVSC PATLARD L Sbjct: 372 VEDLLPEWAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAPATLARDLGRL 431 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + G+ + ++ +DMFP T H+E +V +R Sbjct: 432 AELGFDVVKVQPVDMFPQTSHIECVVSLTR 461 >UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 n=40 Tax=Clostridia RepID=Y1941_CLOTE Length = 456 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 112/452 (24%), Positives = 196/452 (43%), Gaps = 35/452 (7%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 + +++ +++ G+A H G +++ +P + +T KK +A+ K++ L Sbjct: 4 RKGKEYELNIEEIEFPSMGIAYHEGLKVYVKHGIPGQKVLARITTKKKDHAKGKIIEVLE 63 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK------HDVSEVI-ADVP 124 D P + +CP FG CGGC Q + Q K + L K D + + Sbjct: 64 DLPYKIEAKCPAFGQCGGCAHQDIPYEKQLEIKQHEILELFKKANLDGFDFLPIEGSPKQ 123 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAG-SSDIVDVKQCPILAPQLEALLPKVRAC---- 179 + YR + + L K +L +G G S I+ +C I+ +L Sbjct: 124 YEYRNKMEFTFGDLKKGGELNLGMHAKGMSFGIISADECKIVDEDYRNILNATLNYFREK 183 Query: 180 -LGSLQAMRHLGHVE--LVQATSGTLMILRHTAPLSSAD---------------REKLER 221 L + M G++ +++ T +L + S D + L Sbjct: 184 QLPHYRIMAREGYLRNLVIRKAENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKGNLVG 243 Query: 222 FSHSEGLDLYLAPDSEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 H+ L + L + G + D GL+ +P F Q N+ +K+ + + Sbjct: 244 ILHTINDSLSDVVQCDKLNILYGRDYIIEDLLGLKFKITPLSFFQTNSKGAEKLYSIVRD 303 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 ++ V DL+CG G +A +A V+G+E + VE ++NA+LN L N F Sbjct: 304 FIGESKSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFIA 363 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSE 399 ++ + + + K D ++LDP R G ++ +IK + IVYVSCNP TL D + Sbjct: 364 GDIAQVIKEV---KQKPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDLK 420 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L++ GY I ++ +DMFP T H+E++V R Sbjct: 421 VLVENGYVIEKVKGMDMFPSTPHVETVVGLRR 452 >UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBC1_9GAMM Length = 458 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 142/454 (31%), Positives = 224/454 (49%), Gaps = 28/454 (6%) Query: 1 MAQF---------YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAE 51 MA+F + ++R+ + V L G+G+A NGK +F+ G L E Sbjct: 1 MAKFRSKNKPLRVFKPQQRSVISGQHLIPVASLADDGRGIAAINGKNVFVTGALAGETVS 60 Query: 52 VTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL 111 K + A VV +SP R P C +F CGGC QH Q + K L++L Sbjct: 61 ARYVASHKTHDEAVVVSVSKNSPHRVKPLCEYFDQCGGCDLQHLDYPSQTQHKWDRLSQL 120 Query: 112 M-------KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPI 164 V I PW YR RAR +++ +GFR+A S +VD+ +C I Sbjct: 121 FSPWLDNDDRLVMGSITGDPWSYRHRARFAVD--ASKHSCNIGFRQARSHKVVDITRCSI 178 Query: 165 LAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTL-MILRHTAPLSSADREKLERFS 223 + + L VR + SL+ + V + + +SG + + + T PLS++D + + Sbjct: 179 VFDGINDALATVRRLVKSLKNRSVINEVSITEDSSGNIGIAIFCTRPLSASDIAAVSEHA 238 Query: 224 HSEGLDLYLAPDSEILETVSGEM------PWYDSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 + + + + + + E DS + + ++ DF QVN +N ++VA Sbjct: 239 ITHDCHIEVRSSATATQCMFPEDRSVALSYTLDSYDVVIPYTVDDFTQVNPAINHRLVAL 298 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 ++WL + +D V D FCG+GNF+LP++T A VG E V ++V+K + NA N + N Sbjct: 299 TIKWLQLGEKDIVADFFCGIGNFSLPISTFVARTVGFEWVASMVDKARSNAVFNHIDNCE 358 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARD 397 F + + + F+K LLDP RAGA + +Q+ + + RIVY+SCNP TLARD Sbjct: 359 F---KVIDLTADRLVIDEDFNKALLDPPRAGAEKICKQLAESKLERIVYISCNPRTLARD 415 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 S+ L + Y + L++ DMFP T H E + LF+R Sbjct: 416 SKILTQGNYQLTELSLADMFPQTVHSEVVALFTR 449 >UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9N7_9PORP Length = 493 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 137/479 (28%), Positives = 210/479 (43%), Gaps = 51/479 (10%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 A++R R + V + + + GQ VA K LF+P P + + V K+ Y Sbjct: 1 MARKRKEPRYLDDVLIERMGAEGQCVAHVEDKVLFVPYAAPGDRCRIRVGRSKRSYMLGT 60 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM--------KHDVS 117 + L SP R PRC FG CGGC+ Q D Q R KS A M +H Sbjct: 61 IEELLEPSPLRVEPRCEVFGACGGCKWQQLPYDEQLRGKSQQAADAMTRIGHIAIEHTEP 120 Query: 118 EVIADVPWGYRRRARLSLNYLP---------------KTQQLQMGFRKAGSSD-IVDVK- 160 V + PW YR + + + + + +GF KAG D ++D+ Sbjct: 121 IVGCEDPWHYRNKVEFTFSKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHG 180 Query: 161 -QCPILAPQLEALLPKVRA-CLGSLQAMRH---------LGHVELVQATSGTLMILRHTA 209 C I P + + CL + + + + + T G LM+L A Sbjct: 181 VTCQIADPIASEIRDYLNDYCLARWEEYPYYDQRAHEGVMRTLLIRTTTLGGLMVLIAFA 240 Query: 210 PLSSADREKL-----ERFSHSEGLDLYLAPD-----SEILETVSGEMPWYDSN--GLRLT 257 + R +L ERF L + +++ + P+ + N GLR Sbjct: 241 EGTEELRVQLLEALRERFPQITSLYYMVNTKFNDSLADLPAQLYSGAPYIEENMHGLRYR 300 Query: 258 FSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 P+ F Q N+ +++ + E+ ++ ++ V DL+ G G LA SV+G+E V Sbjct: 301 IGPKSFYQTNSRQAERLYEKVREYAQLKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYV 360 Query: 318 PALVEKGQQNARLNGLQNVTFYHENLEEDVT-KQPWAKNGFDKVLLDPARAGAAG-VMQQ 375 P VE N NG+ N TFY +++ +T A D ++ DP RAG V++ Sbjct: 361 PEAVEDAFVNRDQNGITNATFYAGDMKAILTDDFVAAHGRPDVLVTDPPRAGMDAPVVEV 420 Query: 376 IIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSRVK 433 I++ P RIVYVSCNPAT ARD L+ G Y + +DMFPHT H+E++ L S++ Sbjct: 421 ILRAAPQRIVYVSCNPATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSKLN 479 >UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5A4_9BACT Length = 508 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 215/471 (45%), Gaps = 47/471 (9%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 ++++ + + + D+ + G+ +AR + +F+P +P + ++ V + K Y A+ Sbjct: 37 MSRKKKPLPLLENILITDVAAEGKSLARIDDMVVFVPFAVPGDVVDLQVRKKKHHYCEAE 96 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSE--- 118 VVR + S R+TP+C HFG+CGGC+ Q + Q ++K L R+ K ++ E Sbjct: 97 VVRFIKYSDVRQTPKCQHFGICGGCKWQMLPYEEQLKAKQKQVHDQLERIGKIELPEFRP 156 Query: 119 -VIADVPWGYRRRARLSL------------NYLPKTQQLQMGFRKAGSSD-IVDVKQCPI 164 + ++ + YR + + + +GF G+ D I +++C + Sbjct: 157 IMGSEKTYEYRNKLEFGCSNKRWLTWEEVTSGVKYDHMNAIGFHITGAFDKIYPIEKCWL 216 Query: 165 LAPQLEALLPKVRAC-----LGSLQAMRHLG---HVELVQATSGTLMILRHTAPLSSADR 216 + + +R + G + + A +G M+L D Sbjct: 217 MDDLCNQIRNCIRDYAIDHDISFFDLRAQTGLLRDIMIRSANTGEWMVLVQFKFQEEGDE 276 Query: 217 EK----LERFSHS-EGLDLYLAPDSEILETVSGEMPWYDSNG----------LRLTFSPR 261 ++ L+ + S + L D++ G+ G L+ + + Sbjct: 277 QRAHGLLQHVADSFPQITSLLYVDNQKCNDTFGDQTVVVFKGKDHITETMGDLKFKVAAK 336 Query: 262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321 F Q N + + A E+ + ++ V DL+ G G +A +A V+G+E V + Sbjct: 337 SFYQTNTNQAYHLYSVAREFAQLTGKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAI 396 Query: 322 EKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG-FDKVLLDPARAGAA-GVMQQIIKL 379 + + N+ N + N FY ++++ +T++ A++G D ++ DP RAG V++ I+ Sbjct: 397 KDAKVNSAANDIHNTQFYAGDMKDILTEEFIAEHGRPDVIITDPPRAGMHPDVVRTILGA 456 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 P RIVYVSCNPAT ARD + L + Y + + +DMFPHT H+E++VL Sbjct: 457 APQRIVYVSCNPATQARDLQMLDEQ-YKVMAVQPVDMFPHTPHVENVVLLE 506 >UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Variovorax paradoxus S110 RepID=C5CUM3_VARPS Length = 482 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 163/458 (35%), Positives = 229/458 (50%), Gaps = 46/458 (10%) Query: 19 VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + V LD QGVA G +FI G LP E + V K + + V +S +R Sbjct: 23 LKVESLDLDAQGVAHNAEGMVVFIEGALPFEEVQFNVHRRKNNWEQGTVTAIRRESSQRV 82 Query: 78 TPRCPHFG----VCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSEVIADVP---WG 126 P CPHFG CGGC+ QH Q K AL L K V+ + W Sbjct: 83 RPGCPHFGLHTGACGGCKMQHLDEAAQVAVKQRALEDNLWHLGKVRPDNVLRPLEGPAWH 142 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR RARLS+ ++ K + +GF + S + D++ CP+L Q+ +L +RA +GSL A Sbjct: 143 YRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQVSDMLMPLRALIGSLDAR 202 Query: 187 RHLGHVELVQATS-------GTLMILRHTAPLSSADREKLERFS-HSEGLDLYLA---PD 235 +EL + ++LRH PLS+AD +L+ F+ + G+ +L PD Sbjct: 203 ETCPQIELACGDAPGTTSLGTIALVLRHLEPLSNADIGRLKAFAAQNAGVQWWLQAKGPD 262 Query: 236 SEILETVSGEMPWYD--SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 + L G Y+ G+ + F P DF QVN +N+ +V +AL LDVQ ++RV+D Sbjct: 263 TVKLLEEGGMPLSYELPQFGVTMPFKPTDFTQVNPHINRALVGKALRLLDVQADERVIDW 322 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN--------GLQNVTFYHENLEE 345 FCG+GNFTLPLA++A V+G+EG LV + N N L F NL E Sbjct: 323 FCGLGNFTLPLASRAREVLGIEGSDTLVARASDNFSKNQPATSARRALSATRFVARNLFE 382 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE------------PIRIVYVSCNPAT 393 A DK L+DP R GA + + + L P RIVYVSCNP+T Sbjct: 383 MTPAMLVADGSADKWLVDPPREGAFALAKAMADLHLQPELRTDGWTPPKRIVYVSCNPST 442 Query: 394 LARDSEALL-KAGYTIARLAMLDMFPHTGHLESMVLFS 430 LARD+ L+ +AGY +++MFPHT H+ES+ +F Sbjct: 443 LARDAGLLVHQAGYRCTFAGVINMFPHTAHVESIAVFD 480 >UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10VH2_TRIEI Length = 485 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 122/483 (25%), Positives = 218/483 (45%), Gaps = 70/483 (14%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 Q++ +++ DL G GV R++ K +F+P + + +T K +YA K+ + L S Sbjct: 9 GQLVEITITDLTDSGDGVGRYDEKVVFVPNTVSGDRLLARLTRVKPKYAYGKMHQLLEGS 68 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADVP----W 125 +R P C CGGCQ QH + Q ++K AL R+ + EV + + Sbjct: 69 EQRIKPYCIVADKCGGCQWQHVGYEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTF 128 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS--- 182 GYR + L+ + +++ G+ + GS ++++ QCPI + LL +++ + Sbjct: 129 GYRNKVTYPLSISNE-GEVKAGYYQKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKW 187 Query: 183 --LQAMRHLGHVELV-----QATSGTLMILRHTAPLSSADR----------EKLERFSHS 225 + +G + + + T ++ L + ++ + LE +S Sbjct: 188 KIYDEHKRIGILRHLSLKIGEKTGEIILTLVVNGSEENPEKLLPGITVQAQKWLEDYSRL 247 Query: 226 EGLDLYLAPDSEILETVSGEMPW---------YDSNGLRLTFSPRDFIQVNAGVNQKMVA 276 G+ L +S+ T+ G+ +GL +P F QVN +K+V Sbjct: 248 VGVCLNY--NSKATNTIFGQQTVCVAGRFYVREKFSGLEFQLTPNTFFQVNTKTTEKLVE 305 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLAT-------------------------QAASV 311 ++ L + + ++D +CG+G F L LA + + V Sbjct: 306 IVIQELALSNSEIIVDAYCGVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMV 365 Query: 312 VGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA- 370 +G+E +E+ + NA++N L NV FY +E + P + D VLLDP R G Sbjct: 366 IGLEVQGVAIEQAKFNAKINHLTNVHFYEGKVERLL---PQLEVKPDIVLLDPPRKGCDR 422 Query: 371 GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLF 429 V++ ++++ P RIVY+SC PATLARD + L G Y + ++ +D FP T H+E Sbjct: 423 SVLETLLEILPERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFL 482 Query: 430 SRV 432 ++ Sbjct: 483 IKL 485 >UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Lactobacillales RepID=B1N060_LEUCK Length = 473 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 205/464 (44%), Gaps = 36/464 (7%) Query: 1 MA---QFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTED 57 MA + Y K T Q + V D+ G GV + + +F+ +P E +V +T+ Sbjct: 13 MAKANRVYKTKVPVTKNQQVEAEVVDITYQGMGVIKIDNFPIFVIDAIPGEVVQVGITKV 72 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--- 114 K YA +V++R+ SP R G + + Q K + +L K Sbjct: 73 LKSYAFGRVIKRVKASPNRAENVDKVAITTGIAPLANLKYEAQLTFKQRQVEQLFKKVNV 132 Query: 115 --DVSEVIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 +V+ I P YR +A++ + + QL+ GF + GS ++ V+ I P+++ Sbjct: 133 SVEVNPTIGMTDPTKYRNKAQVPVQMV--NGQLETGFYRRGSHKLMPVEDFYIQDPKVDE 190 Query: 172 LLPKVRACLGS-----LQAMRHLGHVELVQATSG------TLMILRHTAPLSSAD----- 215 + R L H G V + A G ++I+ +T L AD Sbjct: 191 AVSVTRDVLRDLGISAYDEETHKGVVRHIMARRGFYSHELMVVIITNTKKLPEADNIAAA 250 Query: 216 -REKLERFSHSEGLDLYLAPDSEIL----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAG 269 R KL S ++ + I+ ETV G +D G P F Q+N Sbjct: 251 LRAKLPELK-SFIHNINNHDTNVIMGQWNETVWGADEIHDQLMGKDFIIGPNSFYQINPQ 309 Query: 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR 329 + A E ++P D V+D + G+G TL +A Q A V GVE V V ++NA+ Sbjct: 310 TTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSIADQVAKVYGVEVVEDAVLDAEKNAQ 369 Query: 330 LNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVS 388 N + NV F + E +T+ D V +DP R G ++ + ++P VY+S Sbjct: 370 NNHIDNVEFVTADAPEQMTQWAADGLKPDVVFVDPPRKGLTNELISAVSAMQPKTFVYIS 429 Query: 389 CNPATLARDSEALLKAGYTIAR-LAMLDMFPHTGHLESMVLFSR 431 CNPATLARD+ +L G+ I + +D FP T H+ES+++F R Sbjct: 430 CNPATLARDTVQILAEGFHIDGPIQPIDQFPQTTHVESVLIFKR 473 >UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHU9_9CLOT Length = 467 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 118/451 (26%), Positives = 202/451 (44%), Gaps = 31/451 (6%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 QI + + DL+S G GV + +G +F+P + E + + KQYA V R Sbjct: 13 PIQKNQIHRLEITDLNSDGNGVGKIDGFVVFVPMTAVGDLIEAKIVKVLKQYAFGIVERI 72 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHD--VSEVIA-D 122 LS SP+R CP + CGGC +H + + K + R+ D V +++ Sbjct: 73 LSLSPDRIDNDCPVYRQCGGCSLRHIRYEAELDIKRRQVEACFRRIGGIDLTVERILSNP 132 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 GYR +A+ + + + GF S +V C + +P L+ + + Sbjct: 133 HTEGYRNKAQFPVAL--RDGKAVAGFYAKRSHRVVPCGDCRLQSPAFAPLVRVILDFIDE 190 Query: 183 L-----QAMRHLGHVELV----QATSGTLMI-LRHTAPLSSADREKLERF--SHSEGLDL 230 H G + + +G +M+ L T + E R + + + Sbjct: 191 YHLPPYDETNHTGLIRNLYLREAPATGEIMVCLVATKKHIPSADELARRLVACNPKVKSV 250 Query: 231 YLAPDSEILETV--------SGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEW 281 + +S+ + G+ +D G+ + SP F QVN+ +++ A E+ Sbjct: 251 LVNRNSQKTNVILGDRCSVVWGKPVIHDVLRGVDVELSPLSFYQVNSLQAERLYDLAEEY 310 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 + E+ ++DL+CG G L +A +A V+GVE +P VE +++A+ NG++N F Sbjct: 311 AHLTGEETLVDLYCGAGTIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCA 370 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + +E D V++DP R G V+Q I ++ P RIV +SCNPAT ARD Sbjct: 371 DAKEAARSLAQQGLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAARDCGL 430 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L + GY + +A D+F T H+E ++ + Sbjct: 431 LQQQGYRVEEVAAADLFSRTLHVECVISLVK 461 >UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Idiomarina loihiensis RepID=Q5R111_IDILO Length = 450 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 153/455 (33%), Positives = 224/455 (49%), Gaps = 31/455 (6%) Query: 1 MAQFYSA-KRRTTTRQIITVSVNDLDSFGQGVARHNGK---TLFIPGLLPQENAEVTVTE 56 MAQF+ KR + + + V+ LD + V R K T FI G LP E E Sbjct: 1 MAQFFKPQKRNKSVSKTLKGQVSALDHQARAVVRAAVKGQSTRFIMGALPGEVIEYKTAG 60 Query: 57 DKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-- 114 + R L S +R C ++ CGGC QH Q K + L + Sbjct: 61 KHS----GHLERILEPSSDRREVPCEYYASCGGCDFQHIDEQKQLAHKRQVVEELFQKFG 116 Query: 115 ---------DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPIL 165 E + P YRRR RL+ +L K Q+L +GFR+A S IV ++ C + Sbjct: 117 VFNPQTSSLPWQEPLVSEPMRYRRRVRLATRWLGKEQKLLIGFREAQSHHIVPIEDCLVA 176 Query: 166 APQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHS 225 L + + L + LGH+E + T+ +++LR T L + L+ + Sbjct: 177 DEILLHCVNTLYPLLNTSTVASKLGHIEAI-NTNTPVILLRITEALPGDAMQALQEWQTV 235 Query: 226 EGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 +++L ++++ MP+ S +G +L F P DF+QVN G+NQ+MV +A++WL Sbjct: 236 NKTNIWLQSENDLQPLAGAAMPFDTSIDGDKLYFQPGDFLQVNGGINQRMVQQAMDWLKP 295 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + RV D F G+GNF+LPLA +A SV+ VEGV + E+ + NA NG+ N++ +L Sbjct: 296 EKTQRVYDFFAGIGNFSLPLARRAQSVLAVEGVYRMAEQTRINAESNGMDNLSSLSADLN 355 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPI----RIVYVSCNPATLARDSEA 400 E D LDPAR GA GV++ + KL+P RI+YVSC P TLARD Sbjct: 356 EITASD--LGKPADLWCLDPARPGAEGVVKLLHKLKPEHRPQRILYVSCAPDTLARDIAG 413 Query: 401 LL----KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +L Y I L+ +DMFP T H+E+MV R Sbjct: 414 MLTESKGCNYRIIGLSTVDMFPQTHHIETMVCLER 448 >UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0F7_DESAC Length = 424 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 134/432 (31%), Positives = 213/432 (49%), Gaps = 25/432 (5%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 +I ++V L G G+ H+GK +F+ G +P + + ++KK+YARA++++ + S + Sbjct: 1 MIELTVTTLAHGGAGLGHHDGKAVFVFGAIPGDRILCQIVQNKKRYARAELIKVIEPSDQ 60 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHDVSE----VIADVPWGY 127 R+ P C HFG CGGC Q S + Q R K R + D V A +GY Sbjct: 61 RQEPACSHFGDCGGCDWQQLSYEQQCRWKQQIFVDSCVRHGRIDQGVIRDLVPAPQEFGY 120 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R R + P Q +GF + GS +++DV+ CP++A + A + R Sbjct: 121 RSRVQFKCYNSP--QGFILGFYRRGSHNVIDVRHCPVIALPIAAQMTAWRTLFDGSVYAS 178 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERF-----SHSEGLDLYLAPDSEILETV 242 + +++ + L + H A+ E + +G L + Sbjct: 179 GVSQIDVAVGSDDALRTIVH---YRGAETEAFCAWLAGCLDAVDGAVLVQTGRKNPQILL 235 Query: 243 SGEM---PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN 299 G++ D + L + P F QV+ N+++VAR +E +V +D VLDL+CGMGN Sbjct: 236 QGQVDLAIRVDEPPMELHYGPGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYCGMGN 295 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 359 F+LPLA +A +VVGVE + +N GL N TF+ ++E + + W + D Sbjct: 296 FSLPLARRAGAVVGVEDYAPSISYADRNRDTLGLTNATFHACSVETFLGR--W-RRTADV 352 Query: 360 VLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 ++LDP R+GA + +++ P RIVYVSC+ TL RD AL YT+ + LDMFP Sbjct: 353 IVLDPPRSGAREAVAGMMRCRPRRIVYVSCDQQTLMRDLTAL-AQSYTVTSIQALDMFPQ 411 Query: 420 TGHLESMVLFSR 431 T H E + + R Sbjct: 412 TCHTEVLAVLDR 423 >UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMY7_9FIRM Length = 493 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 109/450 (24%), Positives = 184/450 (40%), Gaps = 30/450 (6%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 I+ + + L S G+ + +G +F+P + EV + + K Y K+ R ++ Sbjct: 2 KKNDIVEIEITALSSECSGIGKKDGMVIFVPFSAIGDKLEVKILKVNKTYCYGKIERIIT 61 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVP 124 SP+R TP CP + CGGC +H S + Q R+K + + + Sbjct: 62 PSPDRVTPDCPVYTKCGGCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNI 121 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC----- 179 GYR + ++ + K L GF S IV ++C + + Sbjct: 122 NGYRNKLQIPIG-TDKDGNLIAGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGLN 180 Query: 180 LGSLQAMRHLGHVELVQATSG--------TLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L + H G + + G +++ ++ + LE++ + Sbjct: 181 LTAYDETTHKGILRHLYLRKGYYSGEICLCIVVAKNVPEIKILSDRLLEKYPEIVSSVIN 240 Query: 232 LAPDSEILETVSGEMPWYDSNGL-------RLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + + E+ N + + +P+ F QVN +++ + A ++ + Sbjct: 241 VNNRDTNVILGDEEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFAEP 300 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 VLDL+CG G L +A A ++GVE VP +E +QNA NG+ N F + Sbjct: 301 -KGKTVLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAA 359 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 E D +++DP R G +QI RIV VSCN AT ARD + Sbjct: 360 EAARILHSRNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACFAE 419 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 GY+ + +DMF T H+E++VL S K Sbjct: 420 LGYSTDKCVAVDMFSGTNHVETVVLLSHKK 449 >UniRef50_A3WPS3 SAM-dependent methyltransferase n=1 Tax=Idiomarina baltica OS145 RepID=A3WPS3_9GAMM Length = 446 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 177/452 (39%), Positives = 251/452 (55%), Gaps = 27/452 (5%) Query: 1 MAQFYSAK--RRTTTRQIITVSVNDLDSFGQGVARH----NGKTLFIPGLLPQENAEVTV 54 MAQF+ K +++T+ ++T + + LD G+GV R + F+P +LP E A+ V Sbjct: 1 MAQFFKPKGRKKSTSNYVLTGTADALDHQGRGVVRLSKQGKNRVYFVPQVLPGETAQFKV 60 Query: 55 TEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-- 112 T + +++ R + S ER CP++ CGGC QH + Q+R K + L Sbjct: 61 TGQQNT----ELLARQNASEERRQAPCPYYEDCGGCDLQHINETHQRRHKQQVVTELFAK 116 Query: 113 ------KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 + E + W YRR+ARL++ + +++GFR S IVD+ QC +L Sbjct: 117 MAGVRDELPWHETLIADDWQYRRKARLAIYQRNTAEPMRLGFRAHSSKHIVDIPQCVVLD 176 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE 226 L +L +R+ L Q LGH+EL++A L LR T LSS + L FS Sbjct: 177 SALNRVLDDLRSILYEAQIGPKLGHIELIKARDVHLC-LRITQSLSSEQEKCLRAFSSDS 235 Query: 227 GLDLYLAPDSEILETVSGEMPWYDS--NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 L+L D + + +++ ++ +D +G RL F P +FIQVNA VNQ+MV +AL WL Sbjct: 236 QCTLWL-DDGQQITSLAEDVVCFDETIDGDRLVFMPGNFIQVNAKVNQQMVKQALNWLAP 294 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 Q ED +LDLF G+GNFTLPLA + SV VEGV A+ + NA L NV +L Sbjct: 295 QAEDEILDLFAGIGNFTLPLARRVKSVTAVEGVSAMTTQLAANAAAADLSNVHAQTFDLS 354 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE----PIRIVYVSCNPATLARDSEA 400 D + K GF +VLLDPARAGA V Q I +LE P++IVYVSC+P TLARDS Sbjct: 355 TDQVSRLLKK-GFQRVLLDPARAGAEKVCQGIAQLEADKQPVQIVYVSCSPDTLARDSRW 413 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 LL GY I ++++DMF T H+E+MV F +V Sbjct: 414 LLDNGYEITHISLVDMFVQTHHIETMVSFKKV 445 >UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXJ3_9BACL Length = 446 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 109/450 (24%), Positives = 198/450 (44%), Gaps = 35/450 (7%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 + V D G GV + + +FI ++ E E + + KK KV+ + Sbjct: 2 QKNDVFEGKVIDYTHDGLGVVKIDNFPIFIEDVIEGEVIEFKIIKLKKNLGYGKVLNIIE 61 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSEVI----ADV 123 S R G H + + Q + K + + + D EV+ + Sbjct: 62 SSKNRVDG----IPKTSGANLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGMED 117 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 + YR ++ + + + +++MG+ K S D+V++++C I + L+ K+R+ + Sbjct: 118 GYHYRNKSVIPVQKV--NGEVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISEL 175 Query: 183 ----LQAMRHLGHVELVQATSGTL----MILRHTAPLSSADREKLERFS--HSEGLDLYL 232 H G + + + TL M+ + E +E+ S + + L Sbjct: 176 NLSVYDENSHSGAIRHIMFRTNTLKSEIMVGIVAKEKFNKLDEFVEKISKLDDRIVSIML 235 Query: 233 APDSEILETVSGE---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + + + G+ +G+ S R F QVN + + ++ALE + Sbjct: 236 NINDKKTNVIFGDKTENLFGKDYITDTLDGIDFKISLRSFYQVNPVQTEVLYSKALELAE 295 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 ++ D ++D +CG+G +L A + V G+E V A V +NA+ N + NV F Sbjct: 296 LKETDTIIDAYCGIGTISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKS 355 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E+ + K D V++DP R G ++ + ++ +IVYVSCNPATLARD E + Sbjct: 356 EDVIKKLISQDVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIMR 415 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY + + +DMFP T H+E++VL S++ Sbjct: 416 GLGYKLGSVQPVDMFPGTYHVETVVLLSKL 445 >UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=72 Tax=Bacteria RepID=Y1095_PORGI Length = 465 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 130/461 (28%), Positives = 209/461 (45%), Gaps = 49/461 (10%) Query: 20 SVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETP 79 + DL + G + R + +F+P P + V V + K+ + + ++V S SP R+ P Sbjct: 2 EITDLAAEGNALCRIDDMVMFVPFAAPGDRCTVQVVKKKRNFMQGRIVSIESPSPIRKGP 61 Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSE----VIADVPWGYRRRA 131 C HF VCGGC+ QH ++Q R+K AL RL K +V E + ++ YR + Sbjct: 62 FCTHFTVCGGCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNKL 121 Query: 132 RLSLNYLPK---------------TQQLQMGFRKAGSSD-IVDVKQCPILAPQLEALLPK 175 + + + +GF G D ++D+++C + A + + Sbjct: 122 EFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRLF 181 Query: 176 VRACL-------GSLQAMRHLG---HVELVQATSGTLMILRHTAPLSSADREKL-----E 220 +R G + + ++G LM++ A RE L E Sbjct: 182 IREYCMQDPERYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVAE 241 Query: 221 RFSHSEGLDLYLA-------PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQK 273 RF L + D E+L E + GL+ + F Q N+ + Sbjct: 242 RFPQITSLLYVINTKCNDTIGDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQAYQ 301 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + A E+ + ++ V DL+ G G +A QA V+G+E VP +E + N+ LNG+ Sbjct: 302 LYRIAREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGI 361 Query: 334 QNVTFYHENLEEDVTKQPWAKNG-FDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNP 391 +N FY ++++ +T ++G D V+ DP RAG V+ I+ P RIVYVSCNP Sbjct: 362 ENTLFYAGDMKDILTNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYVSCNP 421 Query: 392 ATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSR 431 AT ARD L+ G Y + +DMFPHT H+E++VL R Sbjct: 422 ATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVR 462 >UniRef50_B6BUM1 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Betaproteobacteria RepID=B6BUM1_9PROT Length = 437 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 155/432 (35%), Positives = 228/432 (52%), Gaps = 23/432 (5%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + D+D G+GVA+ KT FI L E E + + KK + SP R Sbjct: 6 LHIVDIDHEGRGVAKKEEKTFFIHNALIDEKVEYKILKKKKNIFFGIATHIENPSPVRAD 65 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP--------WGYRRR 130 P CPH+ VCGGC QH Q K+ A + +KH V +V+ + YR + Sbjct: 66 PSCPHYNVCGGCSMQHFKHSSQIEFKNNAFFQTLKH-VGKVVPESQIEPIFLEFSEYRHK 124 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 ARL Y+ K ++ +GF + + + D+ C +L ++ + L ++++ + +L + Sbjct: 125 ARLRAKYVDKKDKVLVGFNERLTHFLTDMDSCEVLPGRISSCLGEIKSLIKNLSIYNRMP 184 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYD 250 +E + I R PLS D +KL FS++ ++++ ETV P D Sbjct: 185 QIEYASNGDRDIFIFRILDPLSIEDIKKLSEFSNARNIEIWTQSKGP--ETVKPLFPERD 242 Query: 251 SNG---------LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 S L L F+P FIQ+N +NQ M+ +ALE L++ P+D V+D F G+GNFT Sbjct: 243 SEIISYPIAKYELNLEFNPSGFIQINPYINQLMIDKALELLNLNPQDEVVDFFSGLGNFT 302 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 LP+A A SV+G+EG LV GQ+NA LN L NV+F + NL E + +K L Sbjct: 303 LPIAKYAHSVIGIEGSEDLVNLGQKNAGLNNLNNVSFQYSNLFEVDVDFVNSLKNKNKWL 362 Query: 362 LDPARAGAAGVMQQIIK--LEPIRIVYVSCNPATLARDSEALLK-AGYTIARLAMLDMFP 418 LDP R GA +++ I K + P IVYVSCNPATLARD+ L+ GY +L+MFP Sbjct: 363 LDPPRDGAMQLLELISKDTMLPETIVYVSCNPATLARDANILVNDKGYKYQSAGILNMFP 422 Query: 419 HTGHLESMVLFS 430 HT H+ES+ LF+ Sbjct: 423 HTSHIESISLFT 434 >UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYI0_DESAD Length = 465 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 132/463 (28%), Positives = 216/463 (46%), Gaps = 43/463 (9%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 + II + L G+G+ R+ G TLF+ G++P + +T+ KK++A A+ Sbjct: 5 NKPIHKGDIIETKIESLAFGGKGIGRYEGLTLFVEGVVPGQTVRCEITKLKKRFAEARRT 64 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKH-------DV 116 LS E +TP C +FG CGGC Q Q K L R+ K Sbjct: 65 EILSHVEEEQTPTCEYFGSCGGCLHQDIKYPAQTFWKGRQVCETLERIGKIGPDTPGMGE 124 Query: 117 SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPK 175 + + + +GYR + S + + L++GF++ GS +D++++ CP+L Q + Sbjct: 125 EALPSPLEYGYRNKMEFSFHGI--GDSLKLGFKRRGSETDVLNISSCPLLPEQCADIPAL 182 Query: 176 VRACLG--SLQAMRHLGH------VELVQATSGTLMILRHTAPLSSA------------D 215 VR ++ A RH V SG +MI T P S + Sbjct: 183 VRDYCAHTNIGAYRHNRGGYWRKLVVRFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDN 242 Query: 216 REKLERFSHSEGLDLYLAPDSEILETVSGEMPWY------DSNGLRLTFSPRDFIQVNAG 269 +L+ F HS E L +V+G+ D + + +P F Q N+ Sbjct: 243 IPQLKSFVHSTRKGRADLATGERLISVTGQEHITETLTHADGSEVSYRITPNAFFQTNSK 302 Query: 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR 329 + + ++ E + +D V DLFCG G + +A ++G+E V+ + NA Sbjct: 303 GAEVLYRKSSELAAPKADDVVWDLFCGSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAA 362 Query: 330 LNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVS 388 LNGL+N + NL + P D V++DP R+G +Q++I+L P +I+Y+S Sbjct: 363 LNGLENTQYIVGNLASE-KGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYIS 421 Query: 389 CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 CNP+TLARD+ + + Y + R A +DMFPHT H+ES+ L ++ Sbjct: 422 CNPSTLARDAAKM-EGRYKLERFAAVDMFPHTAHVESIALLTK 463 >UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacillales RepID=B1YK40_EXIS2 Length = 461 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 115/454 (25%), Positives = 203/454 (44%), Gaps = 32/454 (7%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKV 66 K + ++ +V+ + G+G+A + +FIPGLL E A++ +TE +A AK+ Sbjct: 3 TKIKLQVGEVRSVTCLRMGINGEGIATLERQIVFIPGLLVGETAQIEITEIHNNFANAKI 62 Query: 67 VRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM---------KHDVS 117 ++R SP+R TP CP + CGGCQ QH S + Q R K + K D+ Sbjct: 63 LKRDVRSPDRVTPLCPIYSQCGGCQLQHMSYEGQLRYKEDMVRNAFTKSTKLNVEKSDIR 122 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 I W YR +++ ++ + Q+ G A S+ +V + +C + + + V Sbjct: 123 PTIGTTEWEYRNKSQFAVG--KEGTQIVSGLYSANSNRLVAIDECIVQNKETLRVNKAVT 180 Query: 178 ACLGSLQAMRH--------LGHVELVQA-TSGTLMILRHTAPLSSADREKLER--FSHSE 226 L + + ++ + +G + ++ D E L R + Sbjct: 181 KILNDYNVPVYNSAKQDGVIRNIVVRTGIKTGEIQVVLVAFKDGFKDLEGLSRDIYDIPG 240 Query: 227 GLDLYLAPDSEILETVSG---------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 + + L + ++ V G E SPR F Q+N ++M Sbjct: 241 VISVALNINDKMTSRVFGEQTEILRGVERIEEKMGEFTYQLSPRAFFQLNPEQAERMYGE 300 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 ++ + E+RV+D + G+G+ L +A A V G+E V VE + + G + Sbjct: 301 IVKAAALTGEERVVDAYAGVGSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQ 360 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLAR 396 + E + + D ++DP R+G ++ +I + +I+YVSCNP TLAR Sbjct: 361 YVVGKAETWIPRWVKEGWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLAR 420 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 D + L+KAGY ++ + DMFP T H+E++V+ Sbjct: 421 DCDHLMKAGYKVSYIQPYDMFPQTAHVEAIVVLE 454 >UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFU4_RHOM4 Length = 466 Score = 373 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 136/459 (29%), Positives = 213/459 (46%), Gaps = 45/459 (9%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 + + V G+ + R +G LF+ G +P + A V V + KK YA ++V L SP Sbjct: 7 ELELIVEKFADRGKSLTRVDGYVLFVEGGVPGDRARVRVVKRKKNYAEGRIVELLEPSPL 66 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADVP----WGY 127 R P C +FG CGGC+ QH + Q +K AL + EV +P +GY Sbjct: 67 RTEPCCRYFGTCGGCKWQHVRYEAQLEAKRQSVYEALVHHGGFEDVEVRPTLPSPRLYGY 126 Query: 128 RRRARLSL------------NYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLP 174 R + S + P + +G G+ ++D+++C + P LL Sbjct: 127 RNKMEFSFSADRWLTPEEIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPITVRLLN 186 Query: 175 KVRACLGS-----LQAMRHLGHVELVQ----ATSGTLMILRHTAPLSSADREKLERFSHS 225 ++RA + RH G++ + +G +M+ T+ A +L F Sbjct: 187 ELRAFFKAKGWEPWDIRRHEGYLRHLVIRTGTRTGEVMVNLVTSRYDEARMAELGAFLQE 246 Query: 226 EGLDLYLAPDS-----------EILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQK 273 + ++ ++ E T+ G +D G R +P F Q N ++ Sbjct: 247 QFPEVTTLVNTINSRPAQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAER 306 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + A E ++P+D V DL+CG G ++ +A VVGVE V + VE + NA NG+ Sbjct: 307 LYEVARELAALRPDDLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGI 366 Query: 334 QNVTFYHENLEEDVTKQPWAKNG-FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNP 391 N TF +L E +T +G D V++DP RAG V+++I +L P R VYVSCNP Sbjct: 367 TNCTFVAGDLLEVLTPAFVRTHGRPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNP 426 Query: 392 ATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 T ARD + LL+ Y I + +D+FPHT H+ES+V Sbjct: 427 QTQARDLK-LLRDLYRIEAVQPVDLFPHTDHVESVVALR 464 >UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Neisseria RepID=D0WBI8_NEILA Length = 443 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 144/434 (33%), Positives = 228/434 (52%), Gaps = 19/434 (4%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + ++ LD G+GV + GKT+FI G LP E +T+ KKQ+ A+ V S Sbjct: 4 ETNVAEISALDYEGRGVTKVGGKTVFIKGALPSERVGFQITKQKKQFDEAEAVAIFKVSD 63 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADV---PWGY 127 ER P+C +F CGGC QH S Q K L R+ K +++ + Y Sbjct: 64 ERTVPQCRYFERCGGCSLQHISPAAQVAFKQRMMEEQLERIGKVRPQQILPPIYGYARHY 123 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R RAR S++ L K +L++GF+ ++D+VD+ C +L + LP +R L L Sbjct: 124 RDRARFSVS-LDKLCRLKLGFQAKKTNDVVDISSCMLLPKPVSDKLPAIRGLLQDLAEEG 182 Query: 188 HL-GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE---GLDLYLAPDSEILETVS 243 + E + + T++ + + L + ++ ++ SE G ++L + + + Sbjct: 183 SVARFAEFYRGSEITVLNIAFKSKLRQNEENRIRQWFDSELSDGWQVWLQIEGGVSQPFY 242 Query: 244 GE-----MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + G+ + F P DF Q+N N+ MV+RA++ LD++ +R+ DLFCG+G Sbjct: 243 PKTDKTLKYTLPEFGIEMPFRPGDFTQINTDTNRLMVSRAVKMLDIRQGERIADLFCGLG 302 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGF 357 NF+LP+ A VVG+EG LV + QNARLNG F NL + K + F Sbjct: 303 NFSLPMVKSGADVVGIEGAENLVRRAWQNARLNGCDGQTDFIAANLFDCTEKTVASWGRF 362 Query: 358 DKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 DK+L+DP R+GA V++ + P +IVYVSCNP+TLARD+ L++ GY ++ +++M Sbjct: 363 DKMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSGAGIMNM 422 Query: 417 FPHTGHLESMVLFS 430 F T H ES+ +F Sbjct: 423 FAQTSHTESVAVFD 436 >UniRef50_C8NCJ6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCJ6_9GAMM Length = 430 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 158/435 (36%), Positives = 229/435 (52%), Gaps = 25/435 (5%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + +T++++ D +GVARH+GKT+F+ G LP E +T DKK++ V+ L SP Sbjct: 2 KTLTLTIDGFDYNARGVARHDGKTVFVSGALPGERVVARITADKKRFLETDAVQILEPSP 61 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKH---DVSEVIADVPWGY 127 R TP C ++ CGGC QHA Q R K LAR+ K V I+ PW Y Sbjct: 62 ARITPACAYYDDCGGCALQHADDAAQHRLKETVWLEQLARIGKIAPETVLPAISGEPWHY 121 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R RARL+ + Q +GFR SS +V++++C L + A LP +RA L Sbjct: 122 RSRARLAWD----DAQQALGFRGRASSRVVNLERCLTLPAAISARLPDIRALCARLAQQT 177 Query: 188 HLGHVELVQATSGTLMILRHTAPL-SSADREKLERFSHS--EGLDLYLAPDSEILET--- 241 L V++ + S T++ +R + E + R++ S + ++L E + Sbjct: 178 TLHGVDISEGDSVTVLRIRLQKAVGDRLAAETVARWNESAAQPWQIWLQNGRETRKHPAD 237 Query: 242 ---VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 ++ +P YD L + ++P DF QVN +N+++V +AL L V P RVLD FCG+G Sbjct: 238 APALAYTLPAYD---LTMPYAPDDFTQVNKALNRELVTQALAALQVPPGARVLDFFCGLG 294 Query: 299 NFTLPLATQAASVVGVEGVPALVEKG-QQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF 357 NFTLPLA A V+G+EGV +V + A F +L KQ A Sbjct: 295 NFTLPLARSGADVLGLEGVEEMVVRATANAAAHGLAARCQFRRADLFTVTAKQLKAWGKA 354 Query: 358 DKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 ++ LLDP RAGA + + + K P RIVYVSCNP TLARD+ L + GY +A +L M Sbjct: 355 ERWLLDPPRAGAQALCEALDGKHAPARIVYVSCNPGTLARDAGILAQKGYRMASGRLLHM 414 Query: 417 FPHTGHLESMVLFSR 431 F T H+ES+ +F R Sbjct: 415 FAQTAHVESLAVFVR 429 >UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQ01_9SPHI Length = 476 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 204/473 (43%), Gaps = 50/473 (10%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFI------PGLLPQENAEVTVTEDKKQY 61 K T ++ V ++ + + G+ + R + +F+ PG+ P + ++ +T KKQY Sbjct: 4 KIHKTPERLAHVRIDAVAAEGKCIVRTDEGVIFVENPTGGPGVAPGDVVDLRITNTKKQY 63 Query: 62 ARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVS 117 A R S R P C HFG CGGC+ QH Q K L R+ K ++ Sbjct: 64 REAVAERVHEWSAVRTEPFCEHFGTCGGCKWQHIQYSEQLGFKHQQVVDHLTRIGKVELP 123 Query: 118 EVIADVPWG----YRRRARLS-----------LNYLPKTQQLQMGFRKAGSSD-IVDVKQ 161 E +P YR + + + Q +GF G D ++ ++ Sbjct: 124 EFRPIMPAHPTQYYRNKLEFTCAEGRWLTSAEVGTNQPMDQRAVGFHVPGRFDKVLPIRH 183 Query: 162 CPILAPQLEALLPKVRACLGS-----LQAMRHLGHVELV----QATSGTLMILRHTAPLS 212 C + A+ + A + H G + + T+ +M+ A + Sbjct: 184 CYLQPDPSNAIREAIDAYVLQHDMTLYNLKMHTGFLRTLIIRTADTTQQVMVTLQVAQDN 243 Query: 213 SADREKL-----ERFSHSEGLDLYLAP-------DSEILETVSGEMPWYDSNGLRLTFSP 260 L F L+ L D E++ L P Sbjct: 244 PELLNGLMTYLQTLFPQITSLNYILNTKKNDSYQDQEVVNWAGKPYIEEQMEALTFRIGP 303 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 + F Q NA + A E+ + ++RV DL+ G G L +A A VVGVE V A Sbjct: 304 KSFYQTNAQQAYNLYKVAREFAGLTGQERVYDLYTGTGTIALFVARLAKHVVGVEYVEAS 363 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG-FDKVLLDPARAGAAGVM-QQIIK 378 V + NA++NG+ N TF +++ +T + +A++G D V+ DP RAG + +Q++K Sbjct: 364 VADARVNAQVNGIANTTFVAGDMKAILTDEFFAEHGRPDVVITDPPRAGMDEAVTRQLLK 423 Query: 379 LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 P RIVYVSCN AT ARD L GYT+ + +DMFPHT H+E++V+ ++ Sbjct: 424 AAPERIVYVSCNTATQARDLAIL-DEGYTVTGVQPVDMFPHTHHVENVVVLTK 475 >UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTJ5_ALIAD Length = 449 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 136/450 (30%), Positives = 223/450 (49%), Gaps = 21/450 (4%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MA S + V + G GVA G T+FIP LLP E A V + + +K+ Sbjct: 1 MANTQSP--PVAAGEEYEVEAIRQNDDGDGVAAIGGMTVFIPFLLPGERARVRIEQVEKR 58 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE-- 118 +ARA+++ R +D+P+R PRCP F CGGCQ QH + Q K A + R+ + E Sbjct: 59 FARARLLARANDAPDRVEPRCPVFARCGGCQVQHMAYAAQAAWKEARIRRMAERLGLEAG 118 Query: 119 VIADV-----PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 V+ + P+ YR + ++ + + Q+++MGF + GS D+ + C ++ ++ +L Sbjct: 119 VVRPIETSHTPYRYRNQVQMPVRWNATAQRVEMGFFELGSHDMAVTETCLLVPEAMDDVL 178 Query: 174 PKVRACLGSLQAMRHLGHVELVQAT--SGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 + R L SL + H +V+ + +G + ++ A + + + RF + + + Sbjct: 179 RRARWFLTSLGSTAQFVHHVIVRQSHATGDMAVVFALATDDPSVKRSVGRFHAPQVVQVA 238 Query: 232 LAPDSEILETVSGE---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 + V G+ + GLR+ +SPR F+QV A + ++M + + Sbjct: 239 VTVQPRAHGPVWGDGAEVMKGGSHLEENLCGLRVRWSPRSFLQVQADMAERMYHHVVRAV 298 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 +V+ D V+D +CG+G TL LA+ AA VGVE V + + NA+LN ++N F + Sbjct: 299 EVRETDVVIDAYCGIGAMTLLLASHAARAVGVEEVEDAIADARANAKLNRVRNAEFVVDR 358 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEP-IRIVYVSCNPATLARDSEAL 401 +E + + A N D ++ DP R G + R+VYVSCNPATL RD L Sbjct: 359 VERWLPRFVEAGNRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLL 418 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 G+ + + DMFP T H+E +V R Sbjct: 419 AARGFYVTDIQPFDMFPQTSHVECVVTMRR 448 >UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptococcus uberis 0140J RepID=B9DV28_STRU0 Length = 451 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 109/447 (24%), Positives = 199/447 (44%), Gaps = 32/447 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 +Q I + + + G+G+ + +F+PG L E +T K+ +A AK+++ S Sbjct: 7 KQKIPLKIKRMGINGEGIGFYQKTLIFVPGALKGEEIFCQITSVKRNFAEAKLLKINKAS 66 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE----------VIADV 123 R P+CP F CGGCQ H + Q K + + +K + + D Sbjct: 67 KNRVVPQCPIFDSCGGCQIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDN 126 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 PW YR A+L + ++ G GS ++ + C + + ++ + L Sbjct: 127 PWHYR--AKLQFQTRSFSGKVVAGLYAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQY 184 Query: 184 QA-------MRHLGHVELVQA-TSGTLMILRHTAP---LSSADREKLERFSHSEGLDLYL 232 + + L + + +A S TL I+ T+ L+ + + + + + L + Sbjct: 185 KIPIYNERKIEGLRTIMIRKAIASQTLQIIFITSKEVHLAPIILDMTKTYPEIKTVALNI 244 Query: 233 APDS------EILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 + E + G+ + SPR F Q+N + A+ +E L+V Sbjct: 245 NRSKSSELYGDKTEIIWGQDTIEEEVLDYHFALSPRAFYQLNPKQTSVLYAQVVEALEVS 304 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 D ++D +CG+G A + S+ G++ +P +E ++NA+ G +N + E+ Sbjct: 305 ESDHIIDAYCGVGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAED 364 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 + K D +++DP R G +++ I+ +P ++VYVSCN +TLARD L K Sbjct: 365 IIPKWYQDGYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSKV 424 Query: 405 GYTIARLAMLDMFPHTGHLESMVLFSR 431 YT+ + +DMFPHT E++V R Sbjct: 425 -YTVDYIQSVDMFPHTARTEAVVKLRR 450 >UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevotella RepID=C9Q1J0_9BACT Length = 502 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 130/473 (27%), Positives = 217/473 (45%), Gaps = 47/473 (9%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 Y A++R + V++ D+ + G+ +AR N +F+P ++P + ++ + + K Y A Sbjct: 29 YMARKRKDFPILENVTITDVAAEGKALARVNDMVVFVPFVVPGDVVDLKIRKKKHSYCEA 88 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDV---- 116 +VVR + S R P C HFGVCGGC+ Q+ + Q R+K L+R+ + Sbjct: 89 EVVRFVQYSDTRVEPVCQHFGVCGGCKWQNLPYEEQLRAKQQQVYDQLSRISHVQLPTFY 148 Query: 117 SEVIADVPWGYRRRARLSLNYLP------------KTQQLQMGFRKAGSSD-IVDVKQCP 163 + + + YR + + +GF G+ D I+ +++C Sbjct: 149 PIMGSQLTLHYRNKLEFGCSNKRWLTREEVASGATFDTMNAIGFHITGAFDKILPIEKCW 208 Query: 164 ILAPQLEALLPKVRAC-----LGSLQAMRHLG---HVELVQATSGTLMILRHTAPLSSAD 215 ++ + ++R + + G V + + +G M+L ++ D Sbjct: 209 LMDDLQNQIRNEIRDYALTKGISFFDLRQQTGLLRDVMIRNSDTGEWMVLVQFHFETATD 268 Query: 216 REKLERF-----SHSEGLDLYLAPDSEILETVSGEMPWYDSNG----------LRLTFSP 260 ++ E H + L D++ G++P + G LR P Sbjct: 269 QQTAEALLAHVGEHFPQITSLLWVDNQKCNDTFGDLPVHVFKGNGHIFEVMEDLRFKVGP 328 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPAL 320 + F Q N + A + + + V DL+ G G +A QA VVGVE VP Sbjct: 329 KSFYQTNTQQAYHLYDVARRFASLSGTETVYDLYTGTGTIANFVARQAKKVVGVEYVPEA 388 Query: 321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG-FDKVLLDPARAGAA-GVMQQIIK 378 +E + N+ LNG+ N TFY ++++ + + A NG D ++ DP RAG V++ II+ Sbjct: 389 IEDAKVNSELNGISNTTFYAGDMKDILNDEFIANNGQPDVIITDPPRAGMHADVIETIIR 448 Query: 379 LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 P RIVYVSCNPAT ARD AL Y + + +DMFPHT H+E++VL R Sbjct: 449 ANPQRIVYVSCNPATQARDLIAL-DERYAVTAVQPVDMFPHTPHVENVVLLER 500 >UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD26_CARHZ Length = 441 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 130/438 (29%), Positives = 213/438 (48%), Gaps = 27/438 (6%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPG-LLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + + DL G GV + + F+ G + + +V VT +K+ + + L++SP R+ Sbjct: 5 LEIIDLTEEGLGVGKKEKRVYFVSGDVTVGDVVKVKVTSEKRGVILGEALEILTNSPYRD 64 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIADVPWGYRRRA 131 PRCPHFG CGGC Q+ + Q K + +MK ++ V+ + + YR R Sbjct: 65 VPRCPHFGYCGGCSLQNLDYEQQLVLKKTKVYNIMKKIGRIDAPINSVLPNFAF-YRYRQ 123 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH--- 188 ++ + +L +G+ ++ V C I L + V L + + + Sbjct: 124 KVHFTFGSSQNKLAIGYFDRKNNWF-PVTDCLIADKSLVEVAHYVTEILDAFKLKAYFND 182 Query: 189 ---LGHVELVQA-TSGTLMILRHTAPLSSADREKLER-FSHSEGLDLYLAPDSEILETVS 243 L H+ + ++ T+G + ++ L+ +E + + E L + + V Sbjct: 183 AGVLRHLVVRKSSTTGEIQVVITAVKLNFNVKEIAAKILLNPEIQSLTFHENPKKTREVF 242 Query: 244 G---------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 G + G+ +P F Q+N +K+ AL++LD+ D V D + Sbjct: 243 GKGTAVTFGTRYITEELLGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGY 302 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 G+G+ TLP A AASVVGVE + VE + NA+LNG+ NV F+ +EE + Sbjct: 303 SGVGSLTLPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEEKLPWLLKKG 362 Query: 355 NGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 F+K++LDP R G V+++IIKL P RIVYVSCNPAT ARD + L + GY + Sbjct: 363 YRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYPVEITP 422 Query: 414 LDMFPHTGHLESMVLFSR 431 +DMF T H+E++VL + Sbjct: 423 VDMFSQTMHVENVVLLKK 440 >UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1727 n=19 Tax=Bacillales RepID=Y1727_LISMF Length = 459 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 107/457 (23%), Positives = 193/457 (42%), Gaps = 34/457 (7%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + Q +++ + G+G+ +F+PG + E V + + ++ AK Sbjct: 1 MNQNPVEEGQKFPLTIRRMGINGEGIGYFKKAVVFVPGAITGEEVVVEAVKVRDRFTEAK 60 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHDV----- 116 + + SP R T CP + CGGCQ QH + Q K + + K D Sbjct: 61 LNKIRKKSPNRVTAPCPVYEACGGCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKI 120 Query: 117 -SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPK 175 + + PW YR +++ + + Q++ G A S +V ++ C + P + Sbjct: 121 RPTIGMEDPWRYRNKSQFQTRMVG-SGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNF 179 Query: 176 VRACLGSL-----QAMRHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERF--S 223 VR L G V + +G T ++ + RE L + Sbjct: 180 VRDLLEKYGVPIYDEKAGSGIVRTIVVRTGVKTGETQLVFITNSKKLPKKREMLAEIEAA 239 Query: 224 HSEGLDLYLAPDSEILETVSGEMPWYDSNG---------LRLTFSPRDFIQVNAGVNQKM 274 E + + + G+ + + L S R F Q+N +++ Sbjct: 240 LPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERL 299 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 + L + + ++D +CG+G A + V G++ +P +E ++NA NG++ Sbjct: 300 YQEVEKALVLTGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIE 359 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPAT 393 NV + E+ + K D V++DP R+G G+++ ++ +E ++VYVSCNP+T Sbjct: 360 NVYYEVGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPST 419 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 LARD L K Y I + +DMFP T H+E++VL Sbjct: 420 LARDLALLAKK-YRIRYMQPVDMFPQTAHVETVVLLQ 455 >UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG03_THEYD Length = 389 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 110/426 (25%), Positives = 200/426 (46%), Gaps = 54/426 (12%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I +++ + G+ + +HNGK +F+P +P E + + +D+K Y RA+++ + S Sbjct: 3 EIEITLTGIAHLGEAIGKHNGKVVFVPYAIPGETVKAKIIKDEKDYCRAEILDIIEPSFF 62 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVI------ADVPW 125 RE P C FG+CGGC QH + Q + K L R+ + E A+ P+ Sbjct: 63 RENPSCKLFGICGGCSFQHVAYSYQIKLKEIVVMEQLKRIGGFENPEDFTNLTLKAESPY 122 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR RA S+ +Q +GF+ G+ + V+ C I+ ++ +L + L + Sbjct: 123 NYRNRADFSI-----NRQNLLGFKIRGTHKFLHVECCHIMHDKINKML----SLLQGKKP 173 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 R ++ + + + P+ + +E +G+ Sbjct: 174 KRKSHNITIRYGINTG---------------------------TWLIQPEMDTVEIETGQ 206 Query: 246 MPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 +Y+ G S F QVN +K++ L ++ Q + V+D + G+G FT+ L Sbjct: 207 KFYYERLLGKDFIISAPSFFQVNTYQAEKLIQTVLNYIT-QEDKTVIDAYAGVGTFTVFL 265 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A +A V+ +E + + Q N + N+T+ + EE + + +K D +++DP Sbjct: 266 AQKAEKVIAIEESRSAYKDAQINIK--NFDNITYLCKKTEEALFE---SKINGDAIVIDP 320 Query: 365 ARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 R G V+Q I + + +++YVSC P+TLARD + L + GY + + +DMFP T H+ Sbjct: 321 PRVGCMKEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLKEIQPVDMFPQTYHI 380 Query: 424 ESMVLF 429 E++ L Sbjct: 381 ENVALM 386 >UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6H3_COPPD Length = 438 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 126/438 (28%), Positives = 199/438 (45%), Gaps = 27/438 (6%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLL-PQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + + DL G GVA+ +G F+ G++ P + + +T + Y A+ V + SP R Sbjct: 4 LEITDLTVEGFGVAKSSGLVYFVKGVVAPGDVVKAVITSQHRNYVEAEFVELVQPSPYRI 63 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEV-IADVPWGYRRRAR 132 P CPHF CGGCQ QH S Q + KS L +L + V V I Y RA+ Sbjct: 64 EPLCPHFSQCGGCQLQHISYQEQLQWKSNFASQNLWKLAREKVDNVHIVPSDLLYGYRAK 123 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH---- 188 + + L +G+ S + CPIL L V + L + Sbjct: 124 AHFTFGEENNILNIGYFSK-SDKWFALTTCPILKETLWVTAQDVLSVLRKHDLKSYFTSN 182 Query: 189 --LGHVELVQAT-SGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 L H+++ + +G +L E + L L ++ +TV G+ Sbjct: 183 GTLRHLQVRVSLLTGEKQVLVTFTQFPKNFENVAEEILSAGISSLALHQNTAQNKTVIGK 242 Query: 246 ---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 G +P F Q+N +K+ + AL++L+ QPED V + + G Sbjct: 243 GATLYNGNQYVQEQLMGKVYNITPVSFFQINPVQAEKLFSIALDYLEPQPEDIVFEGYSG 302 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +G FTL A + +V+ EGV V++ +NA LN + NV F + +EE + Sbjct: 303 VGAFTLLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGSL---QQK 359 Query: 357 FDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 +KV++DP R G + + +L+P RIVY+SC+P+TLARD GY++ + +D Sbjct: 360 INKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGYSLNHIQAID 419 Query: 416 MFPHTGHLESMVLFSRVK 433 MFP T H+E + L + K Sbjct: 420 MFPQTTHVECVALLIKEK 437 >UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=5 Tax=Geobacter RepID=Y1452_GEOSL Length = 495 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 124/449 (27%), Positives = 202/449 (44%), Gaps = 33/449 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 +I ++V LD G G+ H+G + + G LP E +T K++ A+ V L+ S Sbjct: 20 GDLIELAVTALDEDGNGIGTHDGTNVHVIGALPDERVRARLTHVGKRHLHAEAVEVLTPS 79 Query: 74 PER-ETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADVP---- 124 R P C G C GC Q K + R +EV+A +P Sbjct: 80 RARLAQPSCKRAGSCDGCPLIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQ 139 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 YR A+L ++ + + +G + S ++D+ CP+ P + ++ V+ + + Sbjct: 140 LHYRNSAKLVVSGTFR--RPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCK 197 Query: 185 AMRHLGH---------VELVQATSGTLMILRHTAPLSSADREKLER---FSHSEGLDLYL 232 + V + +GT M + T + + L + S + + Sbjct: 198 VQVYNPRTGSGLLRYLVVRISERTGTAMAVFVTVERNYNEIHHLAKHLQQSVPQVEVVVQ 257 Query: 233 APDSEILETVSGEMPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 +S + G+ ++ + G+R T SPR F QVN+G + + +W Sbjct: 258 NVNSSEGNVILGQRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSS 317 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + ++ V+DL+CG+G L LA A V G+E V A V + NARLN + N +F + Sbjct: 318 LTGKESVVDLYCGIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDA 377 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E + + D V+L+P R G AGV+ ++ P RIVYVSC PATLARD + L Sbjct: 378 AELIEELVEEGERLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILA 437 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 GY R+ +DMFP T H+E++ L + Sbjct: 438 GLGYATLRVQPVDMFPQTPHVENIALLVK 466 >UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDT6_THET1 Length = 405 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 116/430 (26%), Positives = 196/430 (45%), Gaps = 54/430 (12%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 T+ Q + + ++D+ G+ + RH G +F+P +P E + K+YA A+++ + Sbjct: 18 TSIDQTVDLELHDMAHGGRALGRHEGMVVFVPFGIPGERVLARIYHKHKRYAEAEIIDII 77 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP-- 124 + S +R P+CP+FGVCGGC QH D Q K + L+R+ +V+ +P Sbjct: 78 TPSQDRVIPKCPYFGVCGGCHYQHIRYDRQLEIKRHIVESLLSRIGGFRDIKVLPTIPSP 137 Query: 125 --WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 + YR AR QQ +GF S+ + V CPI+ ++ +L ++ Sbjct: 138 REYYYRNSARFLC-----GQQGDLGFTDWRSNSFIKVDTCPIMDEKINEVLQHIQ----- 187 Query: 183 LQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETV 242 GH G + +R++ L + P + Sbjct: 188 -------GH-----GLPGENVRVRYSRQKDE----------------LVIWPKLSVDLET 219 Query: 243 SGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 + G S F QVN + ++ AL+ L+ V+D +CG+G FT Sbjct: 220 GQQFHTQVLLGREFRVSATSFFQVNTLQAENLIRIALDELEPLEGKTVVDAYCGVGTFTR 279 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 +A +A +G+E P+ + N + GL+ E+++ + P N D++LL Sbjct: 280 FIAERAELTIGIEESPSATADFRYN--MQGLK-AKLIEGRAEKELGRLP---NNIDRLLL 333 Query: 363 DPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHT 420 DP R G ++ I++L P +IVYVSC+PATLARD + L G Y + ++ +DMFP T Sbjct: 334 DPPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKKVQPVDMFPQT 393 Query: 421 GHLESMVLFS 430 H+E++ Sbjct: 394 FHIETIASLE 403 >UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR99_9BACE Length = 454 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 118/450 (26%), Positives = 198/450 (44%), Gaps = 30/450 (6%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 I + + + G GVAR +G +F+ G + E +V + + + +VVR Sbjct: 5 NVKENDICRLIIEGYTAEGAGVARLDGIVVFVQGGVRGEECDVRIEKVGRTNLFGRVVRV 64 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVI---AD 122 SP R P+C H+ CGGCQ + + + +K L R+ DV+ + A Sbjct: 65 FQPSPARIMPQCIHYTKCGGCQFRQMNYAEELEAKRIRVEDCLQRIAGLDVTVPVIHGAK 124 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 YR + + + P+ ++GF + + ++ V+ C + L + + Sbjct: 125 DTRRYRNKVQFPVQPGPEG--PRVGFYRQRTHQVISVEDCLLQPETAARLRAAAVSWMQW 182 Query: 183 LQAMRH--------LGHVELVQATSGTLMI-LRHTAPLSSADREKLERFSHSEG--LDLY 231 + + HV + +G ++ L + ++ + E + + Sbjct: 183 HNISAYDEKTGRGLVRHVYVRVNRAGQSLVCLLVNGKSVPQEDALVQALRNVEPGLVGVV 242 Query: 232 LAPDSEILETVSGEMP-------WYDS--NGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 L + + + G+ W + G S F QVNA + + RAL++ Sbjct: 243 LGVNEKKNNVILGDSYRTLWGQDWLEDTLCGFTFRLSVPSFYQVNANQAEVLYGRALDFA 302 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 + + VLDL+CG+G +L +A QA V G E VP VE ++NA NG+ N F + Sbjct: 303 GLTGRETVLDLYCGIGTISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGD 362 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E D V +DP R G A V+ I+ + P R+VYVSC+PATLARD + Sbjct: 363 AGEAARALAARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRF 422 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + GY + + +DMFP T H+ES+VL +R Sbjct: 423 VSLGYVLRKAEAVDMFPRTAHVESVVLLTR 452 >UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR7_9FIRM Length = 458 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 128/456 (28%), Positives = 206/456 (45%), Gaps = 38/456 (8%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 +++ + LD+ G+G+ + + + I LLP E E+ Y R + Sbjct: 8 MKEKKKDPISSVRTKCIQLDASGKGLVKIKDEKVLIENLLPGEEVELE-------YTRGR 60 Query: 66 VVRR-----LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--DVSE 118 VR L+DSP R PRC F CGGCQ QH Q K + +L+ V + Sbjct: 61 GVRVVSAVRLTDSPLRVKPRCRVFDRCGGCQLQHVDYPAQLDWKKEKVQQLLGRYGRVHD 120 Query: 119 VIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 V+ PW YR + + + L K ++ G + S +V C I P E +L V Sbjct: 121 VLGMAEPWAYRNKVIATFS-LSKKGKVIAGIYEEDSHQLVAYSSCWIQDPIAEKILATVC 179 Query: 178 AC-----LGSLQAMRHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERFS--HS 225 + + G V G L+ L +P+ A ++ ++R H Sbjct: 180 ELMTELRIEPYDEDQRTGLVRHCLIRVGHVSREVLVCLVCASPIFPARKQLIQRLRQRHP 239 Query: 226 EGLDLYLAPDSEILETVSGEMPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVA 276 E + + +S V G + GL+ + + + F Q+N+ + + Sbjct: 240 EITTIVMNVNSRNTSVVLGSQERVLVGTGKIQDELCGLKFSIAAKSFYQINSVQTEVLYG 299 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 +A+E ++ ++RVLD +CG+G+ +L A A VVGVE P V +NAR+N L+N Sbjct: 300 KAMELANLTGKERVLDAYCGIGSISLVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNA 359 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLA 395 F + + + +D V +DP RAGA ++ + +L P RIVY+SCNP+T A Sbjct: 360 WFVEADAGLFMEQAAREGQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQA 419 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 RD L GY + + +D+FP T H+E++VL R Sbjct: 420 RDLRHLTHEGYQVRTIVPVDLFPMTSHVETIVLLQR 455 >UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8C0_9BACT Length = 541 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 137/451 (30%), Positives = 212/451 (47%), Gaps = 44/451 (9%) Query: 19 VSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + ++ ++S GQG+ R +G+T+F+ G LP E A + V ++KK Y +A+V R + +PER Sbjct: 4 LYIDRMNSAGQGIGRAADGRTVFVEGALPGETAVIAVRQEKKSYIQARVERVVEANPERR 63 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP----WGYRR 129 P C + CGGCQ QHA LQ + K + AL R+ ++ I VP W YR Sbjct: 64 EPSCRWYRSCGGCQLQHAEYTLQCQIKAMLAADALRRIGGFEIDGEIPCVPSRNEWRYRN 123 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG-------- 181 +A + + +GF K GS +IV V +CP++ + L V+ + Sbjct: 124 KASFPVRARGRAGD--VGFFKRGSHEIVPVDRCPVICDRANKLYAVVKNMINYGRFCCYD 181 Query: 182 SLQAMRHLGHVELVQATSGT--LMILRHTAPLSSADREKL--------ERFSHSEGLDLY 231 L HV + A G L+IL A E L ERF GL + Sbjct: 182 EKSNSGWLRHVVIRSARDGEELLLILVAAARPEGGALESLERLYDHLKERFPELRGLVVN 241 Query: 232 LAPDS-------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + PD E + + RL + F Q N G +++ A A + Sbjct: 242 VNPDEGNVIIGAESVLVKGEDRLTERLGNFRLDYDGTSFFQANPGQAEQLFAYA---ASL 298 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 +L+L+CG+G T L+ +A ++ VE + V ++N N ++ +T E Sbjct: 299 AEGQNLLELYCGVGALTAFLSRKAKTIRAVEVWASAVALARENGESNRIEGLTVLQGAAE 358 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 V P G D V++DP RAG +++ I R++Y+SCNPATLARD+ L Sbjct: 359 NVVA--PADLEGIDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCNPATLARDAALLRD 416 Query: 404 AGYTI--ARLAMLDMFPHTGHLESMVLFSRV 432 AGY + L + DMFP T H+E++ L S++ Sbjct: 417 AGYVLDMDSLKVFDMFPQTCHVETVCLLSKL 447 >UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEY8_SYNFM Length = 488 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 127/471 (26%), Positives = 198/471 (42%), Gaps = 50/471 (10%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 + + V L G+ +AR G +F+ +P + +T K+QY A+VV LS Sbjct: 19 KKGREYELLVEKLVFGGKALARVEGLVVFMDHAVPGQRVRALITRKKRQYCEARVVEVLS 78 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADVPW-- 125 S P CPHFGVCGGCQ Q + + Q + K +L L ++ A VP Sbjct: 79 QSEAHTEPVCPHFGVCGGCQWQDIAYEEQLKWKRVQVADSLEHLAGAQGVKIEAAVPSDR 138 Query: 126 --GYRRRARLSL-------------NYLPKTQQLQMGFRKAGSSD-IVDVKQCPILAPQL 169 YR + + + +G D + +V+ C + + + Sbjct: 139 LIHYRNKMEFTFSDRRWLTPEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAEA 198 Query: 170 EALLPKVRAC-----LGSLQAMRHLGHVELVQATSG-----TLMILR------HTAPLSS 213 ++ + R + + G + G TL+ L H A +++ Sbjct: 199 VEIVKETRDWCRGSGVPAYGIKSQRGFWRFLVIREGKRTGQTLLHLVTSDQPEHEAAVNT 258 Query: 214 ADREKLERFSHSEGLDLYLAPDSEIL------ETVSGEMPWYD-SNGLRLTFSPRDFIQV 266 R + RF H + ++ + V+G + GLR S F Q Sbjct: 259 LTRHLVSRFPHITTVVHSVSRKKAQVAFGDQSRVVAGPGVIEERLGGLRFRISAESFFQT 318 Query: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 N +K+ Q + V DL+CG G+ L +A + A VVG E V +E Sbjct: 319 NPFSAEKLYDEVSRLAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACV 378 Query: 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNG---FDKVLLDPARAGAAG-VMQQIIKLEPI 382 NARLNG++N F +L+E + +G D V+ DP RAG V+ ++++ P Sbjct: 379 NARLNGIENARFISGDLKERINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGPG 438 Query: 383 RIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 RI+YVSCNPATLARD + Y I + D+FPHT H+E +V R + Sbjct: 439 RIIYVSCNPATLARDLAFFTER-YEIGTVRPFDLFPHTPHIECVVRMDRKR 488 >UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillaceae RepID=A4IK46_GEOTN Length = 463 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 204/461 (44%), Gaps = 47/461 (10%) Query: 14 RQIITVSVNDLDSFGQGVA----RHNGK----TLFIPGLLPQENAEVTVTEDKKQYARAK 65 +Q + LD G G A GK L IP LP E V + K++ A A+ Sbjct: 6 KQSFITDIEQLDKKGAGQAVVWQEEEGKRKKLKLTIPSTLPGEKVRVLIDRPKRRKANAR 65 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD------VSEV 119 + + PER P CPHF CGGC QH + Q R K+ + L++ V E Sbjct: 66 LEEVIEAHPERLEPPCPHFDRCGGCVWQHWQYEGQLRHKTEHVKALLEQHGFDPNIVRET 125 Query: 120 IA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVR 177 I + PW YR + + + + +G + G+ I+ ++ C I ++ +V Sbjct: 126 IGMEHPWHYRNKMEFTFSP-----EGLLGLHEQGNFRQIISLETCLIAGERIVKAAMEVA 180 Query: 178 AC-----LGSLQAMRHLGHVELVQAT----SGTLMI-LRHTAPLSSADREKLERFSH--- 224 L H G + V +G +M+ L T ++ + + Sbjct: 181 RWARDHQLPGYHKDTHEGLLRHVMVRESFATGEVMVALFATEAPEGELKQAADDLTERIT 240 Query: 225 -----------SEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQ 272 E +E ++G YD G R F Q N Sbjct: 241 KALPEVKSLLWLENRAWADRIQAEQTHVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAA 300 Query: 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG 332 K+V ALE QP ++++DLFCG+G F+LP A + ++ G+E V +E ++NA+ NG Sbjct: 301 KLVELALEMGKPQPHEKMIDLFCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNG 360 Query: 333 LQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNP 391 + N F + + + + +LLDP R+GA G VM++I + +P RIVYVSCNP Sbjct: 361 IDNTYFLARDARRGIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNP 420 Query: 392 ATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 T A D L+ GYT+ + +DMFPHT H+E + L SRV Sbjct: 421 ETFAADIAELVPFGYTLKTVQPVDMFPHTAHVELVALMSRV 461 >UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfotalea psychrophila RepID=Q6ANA2_DESPS Length = 444 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 133/442 (30%), Positives = 225/442 (50%), Gaps = 35/442 (7%) Query: 19 VSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 +++ + + G G+ + + GK + IPG LP E + T+ +DKK YA K+ + ++ R Sbjct: 4 LTIEKVINGGYGLTKTDEGKIVLIPGTLPGEEIQTTIHQDKKGYATGKIKKIVTAHDGRI 63 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVS--------EVIADVPW 125 TP CP+ CGGC QHA+ +LQ K A + R K +++ + + + Sbjct: 64 TPPCPYIRNCGGCNLQHATAELQLEIKEAIVKESLTRSGKPELAKASALIQAPIASPQDF 123 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR+R RL + + +MGFR+ S DI+ +K+C + +PQ+ +L + + Sbjct: 124 FYRQRIRLHI-----DEYGRMGFRQHQSHDIIAIKKCLLASPQINEVLTALEEHEEHGEI 178 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSS--ADREKLERFSH--SEGLDLYLAPDSEILET 241 + +EL+ + + L + S AD + +R + +Y ++ L++ Sbjct: 179 CQLASQLELILNPATEQVQLVYLLKRKSRPADTNRAKRLGEKIASVDCIYFIGENFPLQS 238 Query: 242 VSGEMPWYDS-------------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + P + + + F QVN N +M+ L + D++ E+ Sbjct: 239 AYCKTPEEGKVLSLDYKPQALAGKKISMQWEVNGFCQVNIKQNVQMIETVLAFADIRDEE 298 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 VLDLFCGMGNF++PLA QA +V G EG + + ++NA NGL N +FY + + + Sbjct: 299 SVLDLFCGMGNFSIPLACQAKAVTGFEGQGSAIRSAKKNALNNGLDNCSFYQKPVHKACA 358 Query: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 + K +D V++DP R GA + Q+ KL R++Y+SC+PATL RD L K G+ I Sbjct: 359 ELIADKRVYDCVIIDPPRQGAPELAGQLAKLCQKRLIYISCDPATLTRDLAELSKQGFQI 418 Query: 409 ARLAMLDMFPHTGHLESMVLFS 430 ++ +DMFP T H+E++VL Sbjct: 419 KKIQPIDMFPQTYHIENVVLLE 440 >UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3384C Length = 448 Score = 364 bits (936), Expect = 3e-99, Method: Composition-based stats. Identities = 111/440 (25%), Positives = 206/440 (46%), Gaps = 35/440 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 +I +++ D+++ G+GV + GKT+F+P + + V + K++YA K+ + Sbjct: 2 NQQNNNLIKLNIVDINNDGEGVGKFEGKTIFVPNTVTGDVVLVQLNFIKQKYAYGKIKKI 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKH---DVSEVIAD 122 + SP R P C CGGCQ QH S + Q K +L R+ + V +++ Sbjct: 62 IHSSPYRIRPSCIVADKCGGCQWQHISPEYQLYIKQNKIIQSLQRIGRFKDVFVLPILSS 121 Query: 123 VP-WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 +GYR +A L Y K + G+ + S ++++ QCPI +L + L +++ + Sbjct: 122 SQIFGYRNKATYPLGYS-KFGNVNAGYYQRYSHKLINLNQCPIQDSRLNSFLAEIKVDIE 180 Query: 182 S-----LQAMRHLGHVELVQAT----SGTLMILR-----HTAPLSSADREKLERFSHSEG 227 + GH+ + SG +++ + + + LER+ + G Sbjct: 181 KQGWSIYNEKTYQGHLRHLALRIGQNSGEVLLTLISTTGNITKIKEQAKLWLERYPNLVG 240 Query: 228 LDLYLAPD-------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + + + ++ V + P F QVNA + ++ L+ Sbjct: 241 VLVNKNSEKNNKIFGNQTFSIVGKPFLKERFFNIDFKLRPDTFFQVNAQSAETLLHSLLD 300 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 L + +++++D +CG+G FTLPLA + + +G+E +E+ + NA LN + NV FY Sbjct: 301 NLILTGKEKIVDAYCGIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQ 360 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSE 399 +++ + D VLLDP R G V++ + ++ P I+Y+SC P+TLARD + Sbjct: 361 GAVKDILPTLNIF---PDIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLK 417 Query: 400 ALL-KAGYTIARLAMLDMFP 418 + + Y I + +D FP Sbjct: 418 KICYQNLYKILWVQPVDFFP 437 >UniRef50_Q1QX18 RNA methyltransferase, TrmA family n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX18_CHRSD Length = 475 Score = 363 bits (933), Expect = 6e-99, Method: Composition-based stats. Identities = 167/428 (39%), Positives = 231/428 (53%), Gaps = 21/428 (4%) Query: 19 VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 +S+ L G+GVAR +GKT+F+ LP E V V +K++ A VV RL+ SPER Sbjct: 35 LSIERLAHDGRGVARDPHGKTVFVDQALPGERVRVAVHRQRKRFDEAHVVERLATSPERA 94 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-----DVSEVIADVPWGYRRRAR 132 TP C ++G CGGC QH ++ Q+ K L L EV+A YRRRAR Sbjct: 95 TPPCAYYGRCGGCDLQHLDLEAQREHKRRTLDELFTRQGLTLPEIEVLAGEGLAYRRRAR 154 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHV 192 L + + +GFR GS ++D+ C +L P L L+ +RACL L+A R +GH+ Sbjct: 155 LGVKCDAE-GTPHLGFRARGSEHLIDIDSCVVLEPVLSRLIAPLRACLVQLEAPRRVGHI 213 Query: 193 ELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL-----APDSEILETVSGE-- 245 EL+ G +++R + D + RF+ + L AP L GE Sbjct: 214 ELIATAEGACVVVRQLREVP-GDEARWRRFAAEHDVTLAWRVGREAPTLRWLHAPRGEAL 272 Query: 246 --MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 D L L P DF+Q+NA VN ++V AL WL + E+RVLDLF G+GNFTL Sbjct: 273 HVTLVLDDTTLSLGCVPGDFLQINADVNARLVRTALAWLAPRGEERVLDLFAGVGNFTLA 332 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA + AS+ G+EG PA+VE+ NAR GL V +L V + D V++D Sbjct: 333 LAPRVASITGIEGSPAMVERLADNARRAGLHQVGAQQSDLATQVPEVAA----VDWVIMD 388 Query: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 P R GA + + + ++YVSC+PA LARD+ L++ GY I R A+ DMFPHT HL Sbjct: 389 PPRGGAEALCRALADSPVTTLLYVSCDPAALARDAARLVQGGYRIQRAALADMFPHTAHL 448 Query: 424 ESMVLFSR 431 ESM+L +R Sbjct: 449 ESMLLLTR 456 >UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8X8_9DELT Length = 465 Score = 363 bits (932), Expect = 8e-99, Method: Composition-based stats. Identities = 127/462 (27%), Positives = 202/462 (43%), Gaps = 46/462 (9%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 ++ + L G+GVA +G +F+ G LP + +T KK++A L+ Sbjct: 4 PKDSLVQCEIESLAYGGRGVAHVDGMAVFVAGGLPGDTVSARITRSKKRFAEGVAEAVLT 63 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--DVSEVIADVP----- 124 S R P C HFG CGGC QH + Q K+A +A + V +++ D P Sbjct: 64 PSIHRVEPLCAHFGTCGGCALQHLAYPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGSPD 123 Query: 125 -WGYRRRARLSLNYLPKTQQLQMGFRKA---GSSD---IVDVKQCPILAPQLEALLPKVR 177 WGYR + + + L +G R+ GS+ ++D+ QC + A ++ VR Sbjct: 124 IWGYRNKMEFAF--EQREDGLHLGLREPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVAVR 181 Query: 178 ACLGSLQAMRH--------LGHVELVQATSGTLMILRHTAPLSSADR------------- 216 + + H+ + A +G +M+ TA D Sbjct: 182 QFCAATGVPAYNPATESGFWRHLVIRHAAAGEVMVHLITARDERKDNLIKDMAELFLQRF 241 Query: 217 EKLERFSHSEGLDLYLAPDSEILETVSGEMPWYD-----SNGLRLTFSPRDFIQVNAGVN 271 +L F HS + E + G + +R SP F Q N G Sbjct: 242 PELASFVHSTRVKRTTVAFGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGA 301 Query: 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN 331 ++ E+ + +LDL+CG G + LA +A V+G E V K +++ARLN Sbjct: 302 SELFGTVAEFCALSDTHVLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLN 361 Query: 332 GLQNVTFYHENLEEDVTKQPWAKNG--FDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVS 388 GL N +F +LE+ + + + D V++DP R+G + ++ L RIV VS Sbjct: 362 GLTNCSFVSGSLEQGIPGFAGSGDQAVPDVVVVDPPRSGMHEKTAEALLALGAPRIVAVS 421 Query: 389 CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 C+PATLARD + L Y + R+ +DMFPHT H+E++ L Sbjct: 422 CDPATLARDVKRLADR-YHVTRVRAVDMFPHTHHIETVALLE 462 >UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M703_9BACT Length = 454 Score = 363 bits (932), Expect = 8e-99, Method: Composition-based stats. Identities = 133/452 (29%), Positives = 197/452 (43%), Gaps = 44/452 (9%) Query: 17 ITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 + + + ++S GQG++ +G+ +F G LP E +T +KK YA A++ P+ Sbjct: 1 MKLEIEGVNSLGQGLSHLPDGRVVFCTGALPGETVVARLTMEKKAYAVAEIETVAVPHPQ 60 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP----WGY 127 R P C + CGGCQ QHAS LQ K +L RL D+ E I+ +P WGY Sbjct: 61 RVKPSCRWYETCGGCQLQHASRSLQLELKSLIVEDSLRRLGGFDLPEKISCLPSPVQWGY 120 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS----- 182 R +A + + GF K G+ DIV ++ CP++ Q L +R + Sbjct: 121 RNKASFPVRRTASGET--TGFFKMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSA 178 Query: 183 ---LQAMRHLGHVELVQAT--SGTLMILRHTAPLSSADREKLERF--------SHSEGLD 229 L H+ + +T SG L +L T+ L GL Sbjct: 179 YDEKTGRGWLRHIVVRASTYGSGLLALLVVTSKPDQEGMASLRDLWRYLQSRQPALSGLA 238 Query: 230 LYLAP-------DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 L + P E + + RL + F QVN ++ A + Sbjct: 239 LSINPSRGNRIIGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTAQAARLFDYASSLV 298 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 R L+L+CG+G+ T LA ++ +V E P VE ++N N L NV Sbjct: 299 P--DGSRTLELYCGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVELRLSP 356 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIR-IVYVSCNPATLARDSEAL 401 E+ + G D +++DP R G G M + I+ IVYVSCNPATLARD+ L Sbjct: 357 AEKLPSDLF---EGQDCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARDAARL 413 Query: 402 LKAGYTIA--RLAMLDMFPHTGHLESMVLFSR 431 AGY + + DMFP T H+E++ L R Sbjct: 414 QSAGYQLVTSSVRAFDMFPQTSHVETVALLCR 445 >UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XV5_DESDG Length = 457 Score = 363 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 115/456 (25%), Positives = 190/456 (41%), Gaps = 43/456 (9%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 I+ + + L + G+ +ARH +FI LP + VT +K YA A ++ Sbjct: 7 PAEGDILHLQPHTLTTGGRALARHGRLAVFIDNALPGQTVTARVTRCRKNYAEATLLGVT 66 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIA----D 122 + + + P C HF CGGC QH +Q K A R+ + V+ Sbjct: 67 AAADYQTEPFCRHFAECGGCSWQHMPYAMQLEWKQRLVHDAFVRIGRIAEPPVLPALASP 126 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC--- 179 +R + + Q +++G R GS D++++ +C + + + ++ VR Sbjct: 127 AQRFFRNKMEFAFE-NDSPQGIRLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQ 185 Query: 180 --LGSLQAMRHLGHVELVQAT----SGTLMI-----------------LRHTAPLSSADR 216 L + G + +G M+ +R L + Sbjct: 186 TGLTAWDVRSGEGFFRYLVIRETLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESG 245 Query: 217 EKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMV 275 E + F H E A +E +G+ + NG T +P F Q N + + Sbjct: 246 EGITSFIHGERRSPVQAAYAEKTLYSTGDSHLTEQLNGRTFTMAPHAFFQTNTAATEILS 305 Query: 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335 A ++ + DL+CG+G L +A Q SV G+E V+ NAR + Sbjct: 306 RTAADYAG--QGGVLWDLYCGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQQVPQ 363 Query: 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATL 394 F ++ + + K D V+ DP RAG V+ +I P +IVY+SC+PAT Sbjct: 364 ARFLAGDVRRLLIRH---KEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCDPATQ 420 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 ARD+ AL + Y + + +DMFPH+ H+ES+ LFS Sbjct: 421 ARDAAALTDS-YRLEAVQPVDMFPHSAHIESVALFS 455 >UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n=3 Tax=Desulfovibrio vulgaris RepID=Y924_DESVH Length = 468 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 120/450 (26%), Positives = 201/450 (44%), Gaps = 37/450 (8%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 + V+V+ L G+ V RH G+ +F+ LP + V +T +K++A A+ + ++ + + Sbjct: 9 TLDVTVDALAPGGKAVCRHEGRVIFVDRGLPGQQLHVRLTTVRKRFAEAECLAVVTHTAD 68 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP----WGY 127 P CPHFG CGGC Q+ Q K +L R+ + + V+ +P G+ Sbjct: 69 ECDPFCPHFGDCGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGF 128 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC-----LGS 182 R + + + + L +G R+ G ++VDV C + ++ R L Sbjct: 129 RNKMEFAFTTDDR-EMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPG 187 Query: 183 LQAMRHLGHVELVQ----ATSGTLMILRHTAPLSSADREKLERF-----SHSEGLDLYLA 233 H G + A G ++ TAP A+ F + E + Sbjct: 188 WDDAAHRGFWRFLVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHS 247 Query: 234 PDSEILETVSGEMPWYDS---------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 S+ + G+ + + L F F+Q N + + + Sbjct: 248 IRSQNSQVAYGDATVFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMAGL 307 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + V DL+CG+G+ L LA AA++ G+E PA VE Q+NA+ G + F ++ Sbjct: 308 SGREHVWDLYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVR 367 Query: 345 EDVTKQPWAKNG---FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + + K D V+ DP RAG V+ +++ P RIVYVSC+PAT+ARD Sbjct: 368 ALLRSRSKGKAQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGL 427 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 L++ YT+ +D+FPHT H+E++VL S Sbjct: 428 LMQR-YTLHEARPVDLFPHTPHVETVVLLS 456 >UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacteroidetes RepID=B3EU44_AMOA5 Length = 468 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 114/450 (25%), Positives = 200/450 (44%), Gaps = 43/450 (9%) Query: 24 LDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPH 83 L + VAR + + +F+ P + ++ + + K+ YA A V+ P R P C H Sbjct: 18 LAEGNRCVARVDNQVVFVEQAAPGDIMDIQIMKKKRGYAEAIPVQLHKPGPNRIQPFCMH 77 Query: 84 FGVCGGCQQQHASVDLQQRSKSAALA-------RLMKHDVSEVIADVP-WGYRRRARLSL 135 FGVCGGCQ QH Q +K + R++ V++++A P YR + + Sbjct: 78 FGVCGGCQWQHIDYSAQLAAKEQLVKEKLIRLGRIVNPPVAKILAADPNQYYRNKLEYTF 137 Query: 136 NYLPKT-----------QQLQMGFRKAGSSD-IVDVKQCPILAPQLEALLPKVRACLGS- 182 + + +GF K G D +VD++ C + A A+ V Sbjct: 138 SNKRWLTQQEIQSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNAIRLAVGQFAREH 197 Query: 183 ----LQAMRHLGHVE---LVQATSGTLMILRHTAPLSSADREKL-----ERFSHSEGLDL 230 H G + + ++G +M++ + ++F L Sbjct: 198 GYSFYDFRSHQGLLRNLIVRTTSTGEVMVIVQFGENQEGPIVHIMDFIQKKFPTLTSLQY 257 Query: 231 YLAP-------DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + D E+ +GL+ P+ F Q N+ + + + + Sbjct: 258 IVNTKYNETFYDLEVHCYAGQPFITEVIDGLQWQIGPKSFFQTNSTQAKVLYQTVADLAN 317 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 +Q + V DL+ G+G LA +A VVG+E + + ++ Q NA+LN L NV+F+ ++ Sbjct: 318 LQGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNVSFWLGDM 377 Query: 344 EEDVTKQPWAKNG-FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 ++ ++ + G D ++ DP RAG V+QQ++++ P +I+YVSCNPAT ARD L Sbjct: 378 KDIFNEELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNPATQARDIHDL 437 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 Y + +DMFPHT H+E++ + + Sbjct: 438 QDR-YVLTHAQPIDMFPHTSHVENVAVLVK 466 >UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTB6_SYNR3 Length = 455 Score = 361 bits (928), Expect = 3e-98, Method: Composition-based stats. Identities = 121/450 (26%), Positives = 200/450 (44%), Gaps = 35/450 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + +T+ + DL G G+A+H+GK +F+ G LP E A V +T + ++ Sbjct: 5 ASHPNQLTLEIKDLALDGTGLAQHDGKLVFVSGALPAETATVRITGQGRGKLHGEISELT 64 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD------VSEVIADVP 124 SP+R P C G CGGC H Q K L ++ V + + Sbjct: 65 CSSPDRRDPVCILAGKCGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQA 124 Query: 125 -WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 GYR RA + + + L+ GF + GS +V++ CP+L P+L+AL+ ++A L + Sbjct: 125 VLGYRNRAIIPV--QERDNSLKAGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKADLQAA 182 Query: 184 QAMRH--------LGHVELVQATSGTLMILRHTAPLSSA------DREKLERFSHSEGLD 229 + L + L S ++L + ++R+ G+ Sbjct: 183 GWPIYNEDTQKGLLRQLVLRAGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVGVV 242 Query: 230 LYLAPDSEIL-----ETVSGEMPWYDSN--GLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 L + P E + PW + G R F QV+ + +V L Sbjct: 243 LNVQPKPGNTLLGPKERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRSEL 302 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 +Q + ++D +CG+G LPL + ++G+E +E+ Q NA LNGL++ F+ + Sbjct: 303 QLQSGEVLVDAYCGVGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGS 362 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 +E + + D +LLDP R G V + I + P R+ YVSCNPATLARD L Sbjct: 363 VERRLQEFLPFT---DVLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALL 419 Query: 402 L-KAGYTIARLAMLDMFPHTGHLESMVLFS 430 + + ++ D FP T H+E+M + + Sbjct: 420 CADQRFELTKVVPFDFFPQTTHIEAMAILT 449 >UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=9 Tax=Thermotogaceae RepID=Y1094_THEMA Length = 439 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 121/441 (27%), Positives = 208/441 (47%), Gaps = 37/441 (8%) Query: 19 VSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 V + + + G G+A NGK + + G P E + +K+ ++ KVV L +S +R Sbjct: 5 VRIQKMVNGGYGLAHLSNGKVVLVEGAYPGEEVLIKTYREKRDFSFGKVVSLLKESEDRI 64 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL-----MKHDVSEV-IADVPWGYRRRA 131 P C +FG CGGC + Q R K L L +K +V +V +D+ + YR + Sbjct: 65 KPPCRYFGRCGGCHWMDVKYETQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTKM 124 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH--- 188 Q ++G +K S ++D+K C + +L V+ + L + Sbjct: 125 EFHF------QGRKLGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWE 178 Query: 189 -----LGHVELVQA-TSGTLMILRHTAPLSSAD-----REKLERFSHSEGLDLYLAPDSE 237 L H+ + A ++ M++ T S R L+RF + + Sbjct: 179 TRKGVLKHLVIRYAFSTDQFMVIFVTKTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDS 238 Query: 238 IL-----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 ++ +T+ GE + + R P F Q N + K++ +Q + VL Sbjct: 239 VVLRGPYKTLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVL 298 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DL+ G+G F++ + AA V+ VE V+ G+ NA +N +N+ + +++ + + Sbjct: 299 DLYAGIGTFSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNYS 358 Query: 352 WAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIAR 410 D+++LDP R+GA VM++I +L P RIVYVSC+P+TL RD + L++ GY+I R Sbjct: 359 ---GRADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGYSIVR 415 Query: 411 LAMLDMFPHTGHLESMVLFSR 431 + DMFP T H+E+ V + Sbjct: 416 VKPFDMFPQTYHVETAVTLVK 436 >UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7Z6_MACCJ Length = 459 Score = 361 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 105/454 (23%), Positives = 187/454 (41%), Gaps = 33/454 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + Q +++ L G+G+ K F+ G LP E VT+ +Y +AK+V+ Sbjct: 5 QVKVGQQFPLTIKRLGINGEGIGYFKRKITFVKGALPGEVIVAQVTDINPKYLQAKMVKI 64 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIAD------- 122 S ER P+C F +CGGCQ QH S Q + K + + V D Sbjct: 65 REKSNERVKPKCNVFDLCGGCQLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIKDVKG 124 Query: 123 --VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 P+ YR + + + ++++ G K S+ ++D+ +C + + +V+ + Sbjct: 125 MHNPYTYRNKNQFPV--EKTGRKVRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKKIM 182 Query: 181 GSLQA-----------MRHLGHVELVQATSGTLMILRHTAPLSSAD--REKLERFSHSEG 227 L +RH+ + ++ + +T L D E++ R + + Sbjct: 183 SELNIDACKNPMREKGVRHIVTRVALATGEIQVVFVTNTRHLKKQDLLAERVMRLAGVKS 242 Query: 228 LDLYLAPD-------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + L + + E + E S F Q+N + + Sbjct: 243 VALNINTEKTSIVMGDETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRD 302 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + ++ V+D FCG G + LA A V G++ + NA LNG N F Sbjct: 303 AAALTGQENVVDAFCGTGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEV 362 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSE 399 + E + + D + +DP R G + ++I ++P VY SCNP+TLA+D Sbjct: 363 GDASEKLNEWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLA 422 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L KA + + + +DMFP T +E++V +R + Sbjct: 423 HLTKA-FQVEYIQPVDMFPQTAQVEAVVKLTRKR 455 >UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Bacteria RepID=B9KXM9_THERP Length = 406 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 124/428 (28%), Positives = 196/428 (45%), Gaps = 53/428 (12%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + + + + D+ G + R +G+ +F +P E+ V + +D+K ++ +V+ + SP Sbjct: 14 RTVPLHLEDMAYQGAAIGREDGRIVFAEYGIPGEDVLVAIEKDRKDHSLGRVIEVRTASP 73 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIA----DVPWG 126 ER P CP+FG+CGGCQ QH + Q K A L R+ K D V+ P+G Sbjct: 74 ERVDPPCPYFGICGGCQWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVPSPQPYG 133 Query: 127 YRRRARLSLNYLPKTQQLQMGF--RKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 YR AR S+ + +G+ R + + +C I+ P + + L LQ Sbjct: 134 YRNHARFSV-----DGKGNLGYISRPGHGYRFLRIDRCLIMHPAINEV-------LRRLQ 181 Query: 185 AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSG 244 H+ H +V+ T +L H P SA + SG Sbjct: 182 ERAHVKHQLMVRYGVNTGELLVH--PDVSAIDPTIP----------------------SG 217 Query: 245 EMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 + +++S G R S F Q N V ++++ LE + + V+D + G+G F Sbjct: 218 QPAYHESLLGHRFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVGTFAAF 277 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA + A V+G+E P+ V Q N NV + +E + K D V+LD Sbjct: 278 LAPRVARVIGIEESPSAVSDAQVNLDP--FDNVEYVQAKVEHVLGKLAV---RPDVVILD 332 Query: 364 PARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 P R G A + ++ L P R++YVSC+PATLARD L+ GY + + LDMFP T H Sbjct: 333 PPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMFPQTYH 392 Query: 423 LESMVLFS 430 +ES+ Sbjct: 393 IESVATLE 400 >UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ2_9FIRM Length = 453 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 129/451 (28%), Positives = 199/451 (44%), Gaps = 37/451 (8%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 T QI+T+ + L S G GVA +G+ +F+PG P + +V + + K YA ++ + Sbjct: 4 TKNQILTLEIESLSSDGNGVAHSDGQAIFVPGTAPGDTVKVRIVKPMKTYAFGRLESLRA 63 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVS--EVI-ADVP 124 P+R P CP G CGGC +H S + R+K A ARL K D+ V+ A Sbjct: 64 SGPDRIIPDCPVAGPCGGCGLRHISYQAECRAKTCFVQDAFARLGKLDLPVHPVLGAPDI 123 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG--- 181 YR + +L + + L GF S I+ C + + L + L Sbjct: 124 NRYRNKVQLPVG-TDENGHLTTGFFAGRSHRIIACPDCKLQPEWMNRLAARACELLEKAG 182 Query: 182 --SLQAMRHLGHVELVQATSG------TLMILRHTAPLSSADR--EKLER---------F 222 S H G V + G L + + L R E+L+R Sbjct: 183 ATSYDEESHTGLVRHLFLRQGWHSGQRLLCFILNGRALPDEQRICEELQREFDLTTVLVN 242 Query: 223 SHSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEW 281 ++ ++ L P + TV G D+ G+ L +F QVN + + A+A + Sbjct: 243 ENTARTNVILGPHTH---TVLGPGVIEDTLAGVSLRMGVHEFYQVNTPAAEVLYAQARTY 299 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL--QNVTFY 339 +QPED +LDL+CGMG L + ++GVE VP VE + A GL Q F Sbjct: 300 AALQPEDFLLDLYCGMGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAARLGLSPQRADFR 359 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDS 398 ++ + D +++DP R G +Q I+++ P +V VSCN AT ARD+ Sbjct: 360 CQDAGAAAAQLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAARDT 419 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 L + GY + +D+FP T H+E +V Sbjct: 420 RWLTEHGYRAMEVQPVDLFPRTRHVECVVKL 450 >UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI35_9BACT Length = 456 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 208/449 (46%), Gaps = 35/449 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 + I + + + G G+A GK +F+P + ++ +T +KK YA KV + +S S Sbjct: 2 KHIPNLEIKKMAMGGFGIAYAEGKAIFVPYTAVGDVVDIDITIEKKDYAYGKVTKYISYS 61 Query: 74 PERETPRCPHFG---VCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI----ADVPW- 125 R +CP F CGGC Q + K+ L L + + + A P Sbjct: 62 DSRVEVQCPSFAAEIPCGGCDWLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQI 121 Query: 126 -GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLP-----KVRAC 179 YR + + + +T ++ G S IV+ C P + L ++A Sbjct: 122 KHYRNKVFMPVGKNYQTGKITYGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAK 181 Query: 180 LGSLQAMRHLGHVELV----QATSGTLMILRHTA----PLSSADREKLE-RFSHSEGL-- 228 + + H G + + + ++++ T P ++ +KL F +G+ Sbjct: 182 VEPYNEIEHKGQLRHIGFRCNSDGRQILVILVTLSGKLPFTNLLVKKLTTEFPQIKGIIQ 241 Query: 229 DLYLAPDSEIL----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 ++ ++ IL + + G YD+ GL+ + R F Q+N G + +++ ++++ Sbjct: 242 NINRQKENVILGKETKLLYGSENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQDFVN 301 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + +LD +CG+G L LA + V+ +E P +E ++NA LNGL+NV+F + Sbjct: 302 --SNNVILDAYCGIGAIGLSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKV 359 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E++++ K D +++DP R+G ++ II+ E +I+Y+SC P TLARD L+ Sbjct: 360 EDNLSAVLI-KEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLI 418 Query: 403 KA-GYTIARLAMLDMFPHTGHLESMVLFS 430 Y + L DMFP+T H+E + + Sbjct: 419 AGEKYKVVFLQPFDMFPNTWHIECLAVLK 447 >UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQU7_LAWIP Length = 470 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 100/450 (22%), Positives = 196/450 (43%), Gaps = 38/450 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + + S G+G+ R K +F+P +P + V +T ++ +V + + S Sbjct: 15 LVLDITSIVSDGRGLGRFENKVVFVPHTVPGQKVLVNITSVHSKFLEGEVKQIIKPSKYE 74 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP----WGYR 128 P C H CGGC QH Q K AL R+ K + ++ +P W YR Sbjct: 75 REPICIHAIQCGGCTWQHIQYKHQIIWKKQIIQDALERIGKVNNPVILDVIPSPCEWRYR 134 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ---- 184 + + P + +G ++ S +++ V C + + ++ VR + Q Sbjct: 135 NKMVFAFAPSPCLSTVLLGLKRVDSHEVIPVTDCLLQSKNTMKIVEIVRHWVRHEQTSLE 194 Query: 185 ----AMRHLGHVELVQATSGTLMIL-----RHTAPLSSADREKL-ERFSH-----SEGLD 229 +++ + + + +G +++ ++T + D + L +R + Sbjct: 195 KKILTLKYFRFLIIRETITGDILVELIVNKKNTLIENKFDEQALGKRLAQCLKGVEAIKG 254 Query: 230 LYLAPDSEILETVSGEMPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + L+ +++ + E + + L+ +F Q+N + + ++ L Sbjct: 255 IILSRRTQVSDIAYSEYIIWHEGERFLEEQVGDIVLSRGNDNFFQINTKATEILYSKILS 314 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + ++ V DL+ G+G+ L LA + V+GVE + A + +N G N +F Sbjct: 315 MAQLTGKELVWDLYTGVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQ 374 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSE 399 ++ + Q D V++DP RAG V++ +I+L P R +YVSCNP T ARD Sbjct: 375 DDAFSFIRSQIQKGITPDIVIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFARDIA 434 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 +L + I + +D+FPHT H+E++ Sbjct: 435 -MLSPHFVIQQTQPVDLFPHTPHVETVSYL 463 >UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Desulfovibrio RepID=C4XJA3_DESMR Length = 450 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 136/454 (29%), Positives = 198/454 (43%), Gaps = 41/454 (9%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + +SV L G+GVAR +G +F+ G LP E VT+ KK +A A R Sbjct: 2 NMQANDELELSVARLALGGRGVARLDGMVVFVDGALPGETVMAKVTQVKKGFAEAVAERI 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSE----VIA 121 ++ +PE PRCPHFGVCGGC Q Q K LARL V + Sbjct: 62 ITPTPEAVEPRCPHFGVCGGCDWQRLDYPAQLFWKREQVAETLARLGGLPDVPVADTVAS 121 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRAC- 179 +GYR + + +L +G R+ + + ++D+ CP++AP ++ VR Sbjct: 122 PEVYGYRNKMEFAFA-----GRLHLGLRERRNPARVLDIDTCPLMAPWAGEVVNAVRELC 176 Query: 180 ----LGSLQAMRHLG---HVELVQAT-SGTLMILRHTAPLSSA-------DREKLERFSH 224 L + G H+ L + G+ + T P +A + L RF Sbjct: 177 RETGLAAYDPRTGKGVWRHLVLRDSRHDGSRLAHIITGPSRAAGDAVHTLGKTLLARFPE 236 Query: 225 SEGLDLYLAP------DSEILETVSGEMPWYDSNGL-RLTFSPRDFIQVNAGVNQKMVAR 277 G + E V G + G L P F Q N G Q + Sbjct: 237 LTGFVHSVRRAPTPVAHGERQSIVLGRGHLTEKMGQATLRVLPDAFAQTNTGAAQSLYEI 296 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 P LDL+CG G L LA A V G++ P +E + +A+L+ N Sbjct: 297 VTREASSDPAGTALDLYCGSGGLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCV 356 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLAR 396 F E + A + V+LDP RAGAA V+ I++ P R+VYVSCNPATLAR Sbjct: 357 F--EAADAADALDDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLAR 414 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 D + L +A Y + + +D+FPHT H+E++ + Sbjct: 415 DLKRLAEA-YDVTSVTPVDLFPHTAHIEAVASLT 447 >UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=78 Tax=root RepID=Y932_STRR6 Length = 543 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 102/451 (22%), Positives = 199/451 (44%), Gaps = 32/451 (7%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 I+ V + DL G GVA+ +G F+ LP E + V + K+ KV + L Sbjct: 3 KKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKYLV 62 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALAR-------LMKHDVSEVIA-DV 123 SP R + G H S Q + K+ + + +V+E + + Sbjct: 63 QSPHRNQDLDLAYLRSGIADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEH 122 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 P YR +A++ + + L+ GF + S +++ ++ I P ++ ++ +R L Sbjct: 123 PVKYRNKAQVPVRRV--NGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRF 180 Query: 184 QAMRH--------LGHVELVQAT-SGTLMILRHTAP-----LSSADREKLERFSHSEGL- 228 + + ++ + + SG +M++ T + + +++F + Sbjct: 181 DLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVM 240 Query: 229 -DLYLAPDSEIL----ETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 ++ + I T+ G+ D G + F QVN + +K+ A+++ Sbjct: 241 QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGLAFYQVNTEMAEKLYQTAIDFA 300 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 +++ +D V+D + G+G L +A V GVE +P VE ++NA+LN + N + + Sbjct: 301 ELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDT 360 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E + +L+DP R G ++ + RI Y+SCN AT+ARD + Sbjct: 361 AENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLY 420 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + GY + ++ +D+FP T H+E++ L S++ Sbjct: 421 QELGYELKKVQPVDLFPQTHHVETVALLSKL 451 >UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8REE9_9FIRM Length = 451 Score = 358 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 105/449 (23%), Positives = 203/449 (45%), Gaps = 30/449 (6%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 +Q++T ++ +D G G+ ++ + + G LPQE V + + +Q ++ + Sbjct: 3 KKKQVVTGTIAHIDEMGNGIIKYREDMILVRGALPQEEVRVEIVKRLQQGYVGNILEIIK 62 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-----HDVSEVI-ADVPW 125 S R P+C + CG CQ H Q + K + L K V +V+ A P+ Sbjct: 63 PSEYRCKPKCSIYAKCGSCQLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVLCAGNPY 122 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS--- 182 YR + + + ++++ GF + S I+ + C + + + ++ + + + Sbjct: 123 HYRNKMIIGFQ-KGRDKRIKAGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLAI 181 Query: 183 --LQAMRHLGHVELV-----QATSGTLMILRHTAPLSSADREKLERF--SHSEGLDLYLA 233 R G + V + T +++ ++ + A R+ +E +H + Sbjct: 182 EIYDEDRRTGLLRHVLIRYGKVTKQIMVVFVVSSNVFPARRKLVEELLKAHPNITTIVQN 241 Query: 234 PDSEILETVSG--EMPWYDS-------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + V G E Y GLR S + F Q+N + + +AL+ L + Sbjct: 242 VNPRKTSIVLGNEERILYGKGYIEDILCGLRFKISCKSFYQINHDQCEVLYTKALDKLML 301 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + VLD +CG+G + +A++ V+GVE V+ QNA+LN ++N+ F ++ Sbjct: 302 TGNEVVLDAYCGIGTIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAG 361 Query: 345 EDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 +++ A+ D +++DP R+G + + +L +I+Y+SCNP T RD L K Sbjct: 362 SFMSQLAKAQQTLDVLIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQK 421 Query: 404 AGYTIA-RLAMLDMFPHTGHLESMVLFSR 431 GY + + ++DMFP T +ES+ + R Sbjct: 422 LGYRVEGSMTLVDMFPFTNSIESVCMLVR 450 >UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSE5_SYNAS Length = 429 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 114/431 (26%), Positives = 191/431 (44%), Gaps = 38/431 (8%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 Q + +++ + G G+ R G +F+P + + E+ +TE ++ YA+ ++ R L Sbjct: 23 PRIGQKVEITIESVAFGGSGIGRFAGLVIFVPFTVDGDRVEIEITEVRQSYAKGRMCRIL 82 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHDVSEV----IAD 122 SP R P C + CGGCQ QH + Q K + R+ KH V + Sbjct: 83 KPSPFRTVPECSLYERCGGCQYQHIAYTHQLEIKKNQVIDAFERIGKHPAPPVRDVIASP 142 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 +P+ YR +A +++ + +G+++A S IV V +C I+ + L +R L + Sbjct: 143 MPYAYRGKAEFHISF-KSGRLPVIGYKEAADSRIVPVSRCAIVDESVNRSLTALRGKLNA 201 Query: 183 LQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETV 242 + A G +IL ++ D + ++ V Sbjct: 202 ISAAGRRG------GKKEERVILWSDTGKAAVDP------------GVSGGRGGLVMRPV 243 Query: 243 SGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 +M L + F Q N+ + MV + + ++ VLD +CG G F+L Sbjct: 244 KEKM---------LRAPFQGFFQANSALVGSMVDSVIRACALTGKETVLDAYCGSGLFSL 294 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-QPWAKNGFDKVL 361 LA+ A + GV+ V +N G+ N F+ ++ E + + D V+ Sbjct: 295 FLASSARQLFGVDADGEAVHCAAENLSKEGISNAEFFAGDVGEILRHTFLKTQQSVDIVV 354 Query: 362 LDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 LDP R G + V++ + L P RI+Y+SCNPAT ARD L +GY + L +DMFP T Sbjct: 355 LDPPRIGCSSDVLEALKSLGPARIIYISCNPATQARDVRRLRDSGYILRDLQPIDMFPQT 414 Query: 421 GHLESMVLFSR 431 H+E + L R Sbjct: 415 KHIEIVGLLER 425 >UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7H7_9ACTN Length = 442 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 118/447 (26%), Positives = 199/447 (44%), Gaps = 35/447 (7%) Query: 13 TRQIITVSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 T + + +++ + G+A + GK +F+ G + + E V +D K + RA+ L Sbjct: 2 TGRNMKLTIESMTYGADGLAHADNGKAVFVQGAVAGDTVEAEVVQDGKSFMRARTTEILE 61 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKH---DVSEVIADV- 123 S +R P CP G+CGGC + S Q +K L R+ K V E++ + Sbjct: 62 PSLDRIQPPCPFVGICGGCSWGNLSRTAQLAAKEQNLRSTLERIGKFAPEQVDELVQPIC 121 Query: 124 ----PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 WGYR + L + ++++G S IV V CP+ + L V Sbjct: 122 HTKDDWGYRNKIELEPTVV--NGRVRLGMHGVDPSKIVAVDSCPLFDKRFPKALKSVVGA 179 Query: 180 LGSLQAMRHLG--HVELVQATSGTLMILRHTAPLSSADREKLERF----SHSEGLDLYLA 233 L L +LG V + + + + P S R ++ R +H + ++ Sbjct: 180 LNYLSGSHNLGLERVGIRASRRTKALEVALWTPTGSFPRSQVSRVLADAAHPTSIVRVMS 239 Query: 234 PDSEI------LETVSGEMPWYDSNGL-RLTFSPRDFIQVNAGVNQKMVARALEWLDVQP 286 + +E ++GE W ++ ++ S F QVN + ++ +E LD Q Sbjct: 240 KGEKKARRVSKVEMLAGEGSWTENIAEGQMRLSAPSFFQVNTKGAEILIELVMEALDPQE 299 Query: 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 ++ +DL+CG G FTLPLA + V VE V ++N +N L NV + + Sbjct: 300 DELAVDLYCGAGTFTLPLARRCDFVAAVEAYGPAVRDLRRNLEINKLDNVDVIGGDAVRE 359 Query: 347 VTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG 405 Q D +++DP RAG A + I + YVSC+PATLARD + ++ G Sbjct: 360 FPDQDA-----DVLVVDPPRAGLAPEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEG 414 Query: 406 -YTIARLAMLDMFPHTGHLESMVLFSR 431 ++ ++ +D+FP T H E++V R Sbjct: 415 TFSPVKITPVDLFPQTFHCETVVHLKR 441 >UniRef50_A4BBK4 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBK4_9GAMM Length = 414 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 128/442 (28%), Positives = 214/442 (48%), Gaps = 37/442 (8%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M +F +K ++ + +++ L G+G+ +G+ + + LP E E + + + Sbjct: 1 MRRF-QSKPKSRIPSTVELTIERLSHDGRGIGHVDGRVVMVDNALPGEVIEAGIDQGNTR 59 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD----- 115 + V R LS S +R+ P C +G CGGCQ QH S Q K A+ + Sbjct: 60 LWQGHVRRYLSVSEQRQEPVCHLYGQCGGCQLQHLSATDQLALKQQAVQDHFHRNRLPAI 119 Query: 116 -VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLP 174 ++ + P GYR RAR L ++ +GF A ++ V+QCP++ +L+ALL Sbjct: 120 GFTDPLVSAPVGYRHRARFHL-----SKSGTLGFHGARGRQVIPVEQCPVITTELQALLD 174 Query: 175 KVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 +VR ++ L +EL +G S + R+ E++ +++ Sbjct: 175 RVR----REAPLKGLQQLELTVDDAGKAGA--RAVKASDSARQAFEQWQNAQDW------ 222 Query: 235 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 E Y + +T P DF QVN +NQ+M+ + +WL + +DR+LDLF Sbjct: 223 --------LTEELTYQAGTQVVTARPGDFTQVNREINQQMLKQIRQWLQPREDDRLLDLF 274 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE-EDVTKQPW- 352 CG GN +L + + A+++G+E +E + A + F +L + +P Sbjct: 275 CGNGNISLAMLDEVAAILGLESSGPAIEAAK--AAVKHHPKAQFLEADLFTSCLQVRPQV 332 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLEP-IRIVYVSCNPATLARDSEALLKAGYTIARL 411 A+ +LDP RAGA V+Q + +L R+VYVSC+PATLARD L + + + Sbjct: 333 AEFAPTIAVLDPPRAGAEQVVQWLSELPSLTRLVYVSCDPATLARDLAQLTADHWHLRKA 392 Query: 412 AMLDMFPHTGHLESMVLFSRVK 433 ++DMFP T H+E+MVL + K Sbjct: 393 GLIDMFPQTRHIETMVLLKKNK 414 >UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AW25_HERA2 Length = 423 Score = 354 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 128/427 (29%), Positives = 202/427 (47%), Gaps = 24/427 (5%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS-DSP 74 + +++ L G GV R+ G+ +F+ LP E V +TE + +AR ++ S + Sbjct: 9 ELDTTIDGLAQGGDGVGRYAGRPVFVAAALPGEQVRVRLTERRNGWARGVLLEPPSNPAA 68 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGY 127 ER TP CP + CGGC Q+ ++ Q+++K LA ++ +V+ A PW Y Sbjct: 69 ERVTPACPVYQRCGGCDWQYQMIESQRQAKQTILAEQLRFVAQTDHAEVAATAAGEPWHY 128 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R AR+ ++ ++GF AG IV+ QC I+ P+L A + +++ L + Sbjct: 129 RSVARVHVDGQ------RVGFYAAGGRQIVEFDQCLIIDPRLNATIERLKPLLP----LI 178 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERF--SHSEGLDLYLAPDSEILETVSGE 245 L + L +T+ + SA R R+ + + + A + E Sbjct: 179 GLREISLRLSTTDGTIHGHLIGQGQSAWRSWARRWMSADATIAGVSSATREGWMALAGAE 238 Query: 246 MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 + +RL +P F Q N + ++ + +L + R+LD FCG+G F LPLA Sbjct: 239 YLYEQLGDVRLRIAPTSFFQANVERARAVLQQIECFLPLNNTTRLLDGFCGVGTFLLPLA 298 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 G+E PA + Q +A+ N L NVT +E + P K FD ++DP Sbjct: 299 HNIGHGWGIEEHPAAIRDAQASAKANQLSNVTLKTGKVEAIL---PQLKQQFDLAIVDPP 355 Query: 366 RAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R G + +I +P I YVSC+P TLARD + L GYTI D FP T H+E Sbjct: 356 RRGVEPAALNALIAAQPTMIAYVSCHPGTLARDIKLLQAGGYTIQHAQPHDFFPQTSHVE 415 Query: 425 SMVLFSR 431 S+VL S+ Sbjct: 416 SLVLLSK 422 >UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU98_9FIRM Length = 498 Score = 354 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 119/496 (23%), Positives = 203/496 (40%), Gaps = 80/496 (16%) Query: 12 TTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 QII + +D +G+ R +G+ + + +P + ++ + +K A +++ L Sbjct: 2 KKGQIIEGVIERVDFPNKGIIRTEDGRQVIVKNTIPGQKVSASINKIRKGKAEGRLLEVL 61 Query: 71 SDSPER-ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV--------IA 121 SP + C H G CGGC Q D Q K+ + +LM + + I Sbjct: 62 EKSPLEGDKTGCVHAGECGGCTYQTLPYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGIK 121 Query: 122 DVP--WGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRA 178 + P GYR + S K L +G K GS DIV V+ C I+ +L A Sbjct: 122 ESPRQTGYRNKMEFSFGDEFKDGPLALGMHKRGSFYDIVTVENCQIVDEDFRKILSVTLA 181 Query: 179 CLGS-----LQAMRHLGHVELVQAT----SGTLMILRHTAPLSSA--------------- 214 +RH G++ + +G +++ T + Sbjct: 182 YFREKNITYYHKLRHTGYLRHLLVRKAVKTGEILVDLVTTTQTDFPGIAAAQMDEVESTL 241 Query: 215 -----------DREKLERFS----------------HSEGLDLYLAPDSEILETVSGEMP 247 + E LE + H+ ++ +E + + G+ Sbjct: 242 NNAQENAFAGTEEELLEGWKAALLAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQDF 301 Query: 248 WYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWLD-----------VQPEDRVLDLFC 295 +Y+ GLR +P F Q N+ + + A E++ + V DL+ Sbjct: 302 FYEELLGLRFKITPFSFFQTNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLYS 361 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G G L+ A V+GVE + VE ++NA+LNGL N F ++ + + + Sbjct: 362 GTGTIAQMLSPVAKKVIGVEIIEEAVEAAKENAQLNGLHNCEFIAGDVLKVIDS---IEE 418 Query: 356 GFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 D ++LDP R G +++II+ ++VY+SC P +LARD E L GY + ++ + Sbjct: 419 KPDYIVLDPPRDGINPKALEKIIRYNVPQMVYISCKPTSLARDLEVLQARGYEVKKVCCV 478 Query: 415 DMFPHTGHLESMVLFS 430 DMFP T H+ES+VL Sbjct: 479 DMFPSTFHVESVVLMQ 494 >UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDB5_9FIRM Length = 431 Score = 354 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 101/435 (23%), Positives = 204/435 (46%), Gaps = 19/435 (4%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + I ++D D GV + + +F+P LL E A++ + + K+YA ++ L Sbjct: 2 KKNEEYIVTCIDDTDLN-SGVVKIDDMVVFVPNLLIGEKAKIKIVKVNKKYAFGIIIELL 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-HDVSEVIA-DVPWGYR 128 S R+ C CGGCQ QH S Q K + +L + +V ++ D PW YR Sbjct: 61 KPSINRQELTCEVAKTCGGCQLQHMSYAYQLDYKYKHVKKLFEGIEVKPILGMDNPWYYR 120 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 +A+ + K ++QMGF + S+D+V K+C I + + ++ + +L+ + Sbjct: 121 NKAQFPVKI--KDGKVQMGFYRQHSNDVVTCKECKIQDHVINEVFSFIQKKI-TLKMAQD 177 Query: 189 LGHVELVQATSGTLMIL---RHTAPLSSADREKLERFSHSEGLDLYLAPDSEIL------ 239 L HV + +++ + ++ ++ + S + F++ + ++ + Sbjct: 178 LRHVFIRHSSTDEIQVVFIGKNEKNIISLSDQLKNTFANITSIVFNYNTRNDNVILGDTY 237 Query: 240 ETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + + G + G ++ + F QVN + + ++A++ ++ + +D++ G G Sbjct: 238 KVLYGNDYIIEECLGNKVKLHFKAFFQVNPKQMEVLYSQAIKAANLTGNETCIDMYAGTG 297 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 + ++ A SV+GVE V V+ N ++N L + + ++ + ++ D Sbjct: 298 TIGMAVSQHAKSVIGVEIVKEAVDNANDNTKMNHLDHCHYVCQDATDFAHDH--KEDKID 355 Query: 359 KVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 + +DP R G ++ I ++P +IVYVSCNP TL+RD + + GY + +DMF Sbjct: 356 VIFIDPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYVQPVDMF 415 Query: 418 PHTGHLESMVLFSRV 432 T LE + +++ Sbjct: 416 CQTIGLECVAKLTKI 430 >UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y248_PARUW Length = 434 Score = 353 bits (907), Expect = 6e-96, Method: Composition-based stats. Identities = 111/434 (25%), Positives = 196/434 (45%), Gaps = 18/434 (4%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 T + + L G G+ R++G +F+P P + + E KK +A A++V+ Sbjct: 6 TIHTQVEGEITALAFGGAGILRYHGFVIFVPFTAPGDQIICRIIEIKKSFAVAELVKLKQ 65 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEV---IADVP 124 S R P CP+FG CGGCQ QH + Q K + L R+ V V A + Sbjct: 66 PSSLRVQPPCPYFGKCGGCQLQHLNEQTQLNYKLTAITDTLKRIGHLKVPSVEMNTAQLN 125 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 W YRR ++L+ Q Q G+ ++ + CPI + ++ ++ + +L Sbjct: 126 WAYRR--HITLHLKSFNQSFQAGYIATDHFSLISIDTCPIFNNLHDPIISILQKFISTLP 183 Query: 185 AMRHL-GHVELVQATSGTLMILRHTAPLSSADR----EKLERFSHSEGLDLYLAPDSEIL 239 G + L++ + ++ L+ +R E LE++ G+ L + Sbjct: 184 NPNQQDGRLTLLKNQNSQYILSFQFCSLNELNRILFQEALEKYPIFSGI---LVTSPKKQ 240 Query: 240 ETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN 299 + L F+P+ FIQ + + + + ++LDL+CG G Sbjct: 241 WIIGNPYSEQKIENLIFRFTPQAFIQNHPEQSLYIYKKICSLTIQLKSKKILDLYCGFGI 300 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 359 +L LA+Q V G+E + ++N++LN L +V F ++E+ + ++ D Sbjct: 301 TSLLLASQGHFVTGIEYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQKCVDL 360 Query: 360 VLLDPARAGAAGVMQQIIKLE-PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 V+++P R G + + +I+ P ++Y+SC P+TLARD L + Y I DMFP Sbjct: 361 VIVNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDLYEIHECTAYDMFP 420 Query: 419 HTGHLESMVLFSRV 432 T H+E++V +V Sbjct: 421 QTSHVETLVHLKKV 434 >UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM76_9BACT Length = 454 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 142/455 (31%), Positives = 222/455 (48%), Gaps = 43/455 (9%) Query: 14 RQIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + IT++V D++S GQGVA +GK +F+ G LP E V++ DKK Y+ AK++ Sbjct: 2 GKEITLTVRDVNSRGQGVAVGEDGKVVFLDGGLPSEVVRVSLETDKKNYSTAKILDIEVP 61 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVI---ADVPW 125 S R TPRCP +G+CGGCQ QH S DLQ K A+ R+ + V ++ + + W Sbjct: 62 SEHRITPRCPWYGLCGGCQLQHGSYDLQLEIKAKSVRDAMERIGRMRVDRLVCHPSPMQW 121 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEAL--------LPKV- 176 GYR +A + ++GF ++GS + + CP+L P +E L +P++ Sbjct: 122 GYRNKASFPVR---SENGGEIGFFRSGSHKLAPIDGCPVLMPHVEKLYVDFRDTVMPELK 178 Query: 177 RACLGSLQAMRHLG---HVELVQATSGTLMILRHTAPLSSAD-REKLER----------F 222 R + RH G H+ G+L+ L L +E LER Sbjct: 179 RNGVPFYDERRHKGLLRHMVFRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQT 238 Query: 223 SHSEGLDLYLAPDSEIL----ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVAR 277 S S + + + IL T+ G+ + + L++ F QVN +++ R Sbjct: 239 SFSGVWNENSSRGNRILGERSSTIWGDGVITEKISNYDLSYDGTAFFQVNPFQAERLFLR 298 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 A + + V++L+ G+G T+ LA A +V+ VE +E+ +N NGL NV Sbjct: 299 ASSIVAERGGA-VVELYAGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVK 357 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLAR 396 E+ V AK D +++DP R G A V+ + + +VYVSCNP+TLAR Sbjct: 358 GICNRAEDTVRTMVEAK--PDVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTLAR 415 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 D L+ G+ +A L D+FP T H+E++ F R Sbjct: 416 DGAKLVSDGWELATLECFDLFPQTVHVETLASFKR 450 >UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E1X6_9CHLO Length = 473 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 131/477 (27%), Positives = 197/477 (41%), Gaps = 60/477 (12%) Query: 12 TTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKK--QYARAKVVR 68 + ++T+ L G+GV + G +F +P E E VT K ++A A V Sbjct: 1 KSGDVLTLECTSLAFGGRGVCKLPGGFVVFCDRAVPGETLEARVTSLKGGGRFAEATKVS 60 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE---------- 118 +S R CPHF CGGC Q + Q K + +M Sbjct: 61 SISPCEHRTAAPCPHFERCGGCTWQDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVG 120 Query: 119 --VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDV---KQCPILAPQLEAL 172 V +D YR + + + + +G R +G+ D+V++ C + P + + Sbjct: 121 DCVPSDKTERYRNKMEFAFGPGANGRGVVIGLRPSGNHSDLVEIGNPDGCLLQHPVADEV 180 Query: 173 LPKVRACLGS------LQAM-RHLGH-------VELVQATSGTLMILRHTAPLSSAD--- 215 L RA L S L A R G V + +G + A + D Sbjct: 181 LRGCRAHLDSNGNSSLLDAFNRRTGEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDED 240 Query: 216 ---REKLERFSHSEGLDLYLAPD-------SEILETVSGEMPW-YDSNGLRLTFSPRDFI 264 R E + G+ D E +E +SG G+ S F Sbjct: 241 AALRGLAEAIAKVRGVASSGGGDADGEGWSGEDVEVLSGAATLPMKLRGVTFALSAPSFF 300 Query: 265 QVNAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322 Q N +K+VA + + + VLDLFCG+G L +A +A V G E VP V+ Sbjct: 301 QTNTDQAEKLVAAVEDACGFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVK 360 Query: 323 KGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEP 381 ++NA NG+ N TF + + K + G D V+ DPARAG + ++++ + Sbjct: 361 DAERNAEANGITNATFRRGD----LAKLKASLPGPDIVIADPARAGMDESLVKVLRSIGA 416 Query: 382 IRIVYVSCNPATLARDSEAL------LKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 RIVYVSCNPAT ARD L A Y + +DMFPHT H+E++V+ R+ Sbjct: 417 ERIVYVSCNPATQARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVLDRI 473 >UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVF8_OPITP Length = 493 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 124/489 (25%), Positives = 188/489 (38%), Gaps = 77/489 (15%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHN-------------------GKTLFIPGLLPQEN 49 + Q I + ++ L + G G+ R G + +P LP E Sbjct: 17 QPFAYHQEIELEISTLTNLGSGLGRVPLTGSQLSTLGSQLTAQPVAGWVVMVPFTLPGER 76 Query: 50 AEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA 109 V + K ++ A +V L+ SP R P CP FG CGGCQ QH + Q K +A Sbjct: 77 VRARVFRNHKNFSEADLVSVLTPSPHRVMPGCPLFGRCGGCQYQHLAYAEQLAWKRRQVA 136 Query: 110 RLMKH------DVSEVIA-DVPWGYRRRARLSLNYLPKTQQLQ----------------- 145 L++H VS VI +GYR + + + Sbjct: 137 ELLQHLGGVEFAVSPVIPSPREYGYRSKITPHFAAPKAARTIAAGSTPAAQESSVPAAVS 196 Query: 146 -------------------MGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 +GF + G+ DI+DV +CPI + L +VRA L + + Sbjct: 197 TPDGPGEARASSAAVPDWPIGFLRQGTRFDIIDVPRCPIATDAINTRLAEVRAELRTQRD 256 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 + T G ++LR + D + + + G+ +E S Sbjct: 257 ----------RYTRGATLLLRDAGGRVTTDYDAV--VTEEIGVVGLDDAGAEKPGLTSPA 304 Query: 246 MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 LRL F RDF Q N + + E ++D +CG G F L A Sbjct: 305 PSNRAGAPLRLHFLARDFFQNNPFILPAFTSYVREQAAASGARFLVDAYCGSGLFALASA 364 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 + V GVE + V ++NA NG+ N +F + + V++DP Sbjct: 365 SAFERVAGVEISESSVRFARENAAANGITNASFLAADAAAIFAGLAFP-AAESVVVIDPP 423 Query: 366 RAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R G +QQ+ P +VYVSC+PAT RD L AGY + + D+FP T HLE Sbjct: 424 RKGCDREFLQQLFAFGPRAVVYVSCDPATQMRDLRDFLAAGYELIAVQPFDLFPQTRHLE 483 Query: 425 SMVLFSRVK 433 ++ R + Sbjct: 484 CVITLRRAR 492 >UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n=14 Tax=Cyanobacteria RepID=Y1228_SYNPX Length = 465 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 131/449 (29%), Positives = 212/449 (47%), Gaps = 38/449 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + DLD G G+AR G + +PGLLP E A+V + + +K +++ RL SP R Sbjct: 20 LELQAIDLDRDGHGLARWQGWVVVVPGLLPGERAKVQLQQRQKSRWLSRISERLDSSPTR 79 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHD---VSEVIADVPWGYRR 129 P C CGGC QH Q+ K L RL D + GYR Sbjct: 80 RRPPCILAQDCGGCTLQHLEESAQRNWKQNQLHQTMLRLGGIDHPQAPALTDQRGLGYRN 139 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS------- 182 R + L + +L+MG+ + GS IV++ +CP+L P+L+AL+ ++ L + Sbjct: 140 RGLIPLR-RGEDDRLRMGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTSGLSADH 198 Query: 183 ----LQAMRHLGHVELVQATSGTLMILRHTAPLSSADR---EKLERFSHSEGLDLYLAPD 235 Q +RHLG + + T L+ + + L + R + +ER+ +G+ L L P Sbjct: 199 DLSHSQGLRHLG-LRIGHHTGEVLITVVSSQQLPALQRLAQQWIERWDPVKGVTLNLQPR 257 Query: 236 ------SEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQP-E 287 ++G + GL+L S F Q+N +++VA + WL Sbjct: 258 RTNQILGATTTVLAGAPTIRELFCGLQLQLSTTTFFQINTPQAERIVACIVSWLSQAELA 317 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEED 346 ++D +CG+G +LPLA Q VVG+E P +++ + NA NGL F ++ Sbjct: 318 GPIVDAYCGIGTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQAGDVANL 377 Query: 347 VTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALL--K 403 + + +++DP R G V++ I+ P + Y+SC+ AT ARD + LL + Sbjct: 378 LKETLA---TCSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKRLLQPE 434 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 Y + +L +D FP T HLE++ RV Sbjct: 435 GPYRLEQLQPVDFFPQTTHLENLAFLRRV 463 >UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDZ7_9FIRM Length = 484 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 125/445 (28%), Positives = 221/445 (49%), Gaps = 33/445 (7%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + +TV+ + G+G+A GK +F+ LLP E AE+ + + + +YA+ +VV+RL+DSP Sbjct: 7 RTVTVTAKKIGINGEGIAYLEGKPVFVDQLLPGETAEIVLLDSQLRYAKGQVVKRLNDSP 66 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHDVSEVIA-DVPWG 126 +R P+CP G C GC + Q + K + + + V VIA G Sbjct: 67 QRVKPQCPVQGRCSGCPLMILKPEAQLQVKRELVQEALIKYAGLSRDKVQPVIASPSGLG 126 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC-----LG 181 YR + +L + + +L G + GS+ ++ + C I P LEAL ++ A L Sbjct: 127 YRNQCKLPIR--EERGRLVNGLFEEGSNRVMPIAHCLIHDPDLEALRKQILALANQFRLK 184 Query: 182 SLQAMRHLG-HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDL---YLAPDSE 237 + + G +++ G + + S + +E+ EG+ + PD Sbjct: 185 AYDPKKGTGLRTLVLRGFEGQYQCVLVSGE-DSLPKGFIEKLKAIEGMTCIMQNINPDKR 243 Query: 238 ILETVS--------GEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 + S + +RL+ S F Q+N +M+ A ++ P D Sbjct: 244 TRQLFSNRWSLLAGEDRLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIE--PCDT 301 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 +++ + G+G +L L +A +++G+E VP VE ++NARLN +NV F + +++ K Sbjct: 302 LVEAYSGVGGISLMLKEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEM-K 360 Query: 350 QPWAKNGFDKVLLDPARAGAAGVM-QQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 + + D V++DP R G G M + + + +P +IVY+SCNPATL ++ + L Y + Sbjct: 361 KIIRRTKIDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDL-YEV 419 Query: 409 ARLAMLDMFPHTGHLESMVLFSRVK 433 + DMFP+T H+E++VL S++K Sbjct: 420 KTVIPFDMFPNTPHVETVVLLSKLK 444 >UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embryophyta RepID=Q9LU28_ARATH Length = 554 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 119/492 (24%), Positives = 200/492 (40%), Gaps = 70/492 (14%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARHNG--KTLFIPGLLPQENAEVTVTEDKKQYA 62 Y KR + + + L G+G+ + +G + LP E VT K YA Sbjct: 65 YYPKR----GETVELVCESLGFKGKGICKVDGTGYVVMCDRALPGERFLGRVTRRKGSYA 120 Query: 63 RAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD------- 115 ++ +S + C + CGGC+ Q+ S + Q R+K + L++H Sbjct: 121 EVTKMKTISPHKDLVEAPCEYASYCGGCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNN 180 Query: 116 ------VSEVIA-DVPWGYRRRARLSLN------------YLPKTQQLQMGFRKAGSSD- 155 + ++A D+ + YR + S + +G G D Sbjct: 181 PGLEIVLKPIVACDIQFHYRNKMEFSFGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDK 240 Query: 156 IVDVKQCPILAPQLEALLPKVRAC-------LGSLQAMRHLGHVELVQATSG-------- 200 +++V +C + + +L V+ C L H+G ++ + +G Sbjct: 241 VLNVDKCLLQSEPGNLVLAAVQDCWRDPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSL 300 Query: 201 TLMILRHTAPL-SSADREKLERFSH-SEGLDLYLAPDSEILETVSGEMPW---------Y 249 LM+ T+ + ++R S + + + +S + T GE + Sbjct: 301 ELMVNFVTSSYKPELLKPLVDRISSIPQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITE 360 Query: 250 DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQ 307 GL S F Q N + + E ++ + + VLDLFCG G L LA + Sbjct: 361 VLRGLTFQISANSFFQTNTHQAEVLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARR 420 Query: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA 367 A V G E VP + +NA++NG++N TF +L + D V+ DP R Sbjct: 421 AKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFGNNFPKPDIVISDPNRP 480 Query: 368 GAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALL--------KAGYTIARLAMLDMFP 418 G +++ ++KL+ RI+YVSCNPAT ARD + L K Y + + +DMFP Sbjct: 481 GMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFP 540 Query: 419 HTGHLESMVLFS 430 HT H+E + L Sbjct: 541 HTPHIECVCLLE 552 >UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTT0_9FIRM Length = 518 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 107/437 (24%), Positives = 198/437 (45%), Gaps = 29/437 (6%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + + + D D G G+ + + +F+ + + T+T+DKK + + +V + L Sbjct: 2 KNKELIGQIIDFDYKGMGMTKLDDIPVFLDKGVIGDKVSYTITKDKKSFYKGRVTKILKK 61 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHD--VSEVIADVP-W 125 S +R C +F CGGC + + K L R+ + D VS+V + + Sbjct: 62 SKDRVESPCKYFNKCGGCDFLNYKYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKTF 121 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR + + + ++G S +IV ++ C + + L L + Sbjct: 122 NYRNNMQFQV------KNGKIGLYMKNSKEIVPIEHCLMQSTNANKTL----KILTKFKN 171 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI------- 238 + + + + +M++ + + L + + +Y ++ Sbjct: 172 LEKIKTLGIRTNYKDQVMLIISSKEKINKLNLILGDLIDANVVSIYENINNRKNAHYGDE 231 Query: 239 LETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 + G+ + N L SP F QVN + + +A+E+L V+ +++ DL+ G+ Sbjct: 232 FNLLYGQEYLEEKINKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGV 291 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-QPWAKNG 356 G +L +A++ A +GVE V +E + NA+ N LQ F EE + K Q K Sbjct: 292 GTLSLEIASRKAQTLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEKIQTDEKIK 350 Query: 357 FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 DK+L+DP R G ++ + K +IVY+SCNPATLARD + L K Y + ++ + D Sbjct: 351 MDKILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKIL-KEKYKVEKVEIFD 409 Query: 416 MFPHTGHLESMVLFSRV 432 +FP+T H+E + L S++ Sbjct: 410 LFPYTSHVEVITLLSKL 426 >UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWS7_9BACL Length = 451 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 108/453 (23%), Positives = 200/453 (44%), Gaps = 33/453 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 K + R + +++ + G+G+ + K F+ G LP E + E+ +Y K+V Sbjct: 2 KNKNGKRLNVLLTIKKIGINGEGIGYYKKKITFVKGALPDEVIVCEIVEETPKYIIGKLV 61 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM----------KHDVS 117 + SP R + + G H S + Q K L K + Sbjct: 62 KVKEPSPHRVEIK-REYAESGAYGLAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLK 120 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + + V GYR + + L + ++ G K GS+D+V++ + L + + Sbjct: 121 TLASPVTEGYRNKNQFPLAV--RNGRVIAGLYKEGSNDLVEINEDLALHENGNKITNLAK 178 Query: 178 ACLGSLQAM----RHLGHVELVQATS----GTLMI--LRHTAPLSSADR--EKLERFSHS 225 LG + + V+ + + G + + + +T + + D+ +L+R Sbjct: 179 KLLGKYKVEISTNKKNYGVKYIATRTSFYNGDVQVTFVANTDKIKNMDKVVNELKRERIV 238 Query: 226 EGLDLYLAPDSEILE------TVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARA 278 + + L + D + L T+ G + G + S + F Q+N +K+ + Sbjct: 239 KSIILNITNDKDHLVMGTESVTLYGSDYIVEKIGDTKYELSAKSFFQLNPPATKKLYDKV 298 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 +E+ ++ D VLD +CG+G ++ V GV+ +PA +E N +LN L+N T+ Sbjct: 299 VEFAALKETDVVLDAYCGVGTIGQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTY 358 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDS 398 + + V + FD ++DP R G + + ++ +E +IVYVSCNP+TLARD Sbjct: 359 VAGDANKIVPRWKKKGINFDVAIVDPPRVGLGPLAKNLLAVEAKKIVYVSCNPSTLARDL 418 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + L + Y I R+ +DMFP T +E++V R Sbjct: 419 KVLTRK-YKIRRIQPVDMFPGTAAVEAVVELIR 450 >UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01U84_SOLUE Length = 389 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 129/417 (30%), Positives = 205/417 (49%), Gaps = 38/417 (9%) Query: 22 NDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRC 81 L G G+ R G+ +F P +LP E ++K RA+++ L+ +P+R + C Sbjct: 2 EKLVYGGDGLGRLEGRVVFAPFVLPGERIRAQAEKEKPGMVRARMLEVLAAAPDRVSAPC 61 Query: 82 PHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSE---VIADVPWGYRRRARLS 134 P FG CGGC QHA + Q +K A LA RL K + E V++ P+GYR R +L Sbjct: 62 PVFGRCGGCHYQHAPYEYQLATKQAILAEEMRRLGKIEPPEEIAVVSSEPFGYRNRVQLH 121 Query: 135 LNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVEL 194 + ++ ++G+R+A S + V QCP+ +P++EA + + + R + +E+ Sbjct: 122 V------EESRIGYREARSHKLCAVGQCPVGSPKIEAAIRALNEMARDSRWPRFMKSIEV 175 Query: 195 VQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGL 254 + + + T +R RF G +I V G + + Sbjct: 176 FSDENQVQLNVLET------ERPVARRFFDWCG--------EKIPGMVEGALDYEG---- 217 Query: 255 RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV 314 R S F QVN + ++V A+E + D LDL+ G+G +LPLA + V V Sbjct: 218 RFRVSSNSFFQVNRFLIDRLVEVAIEGAE---GDTALDLYAGVGLLSLPLARKFREVTAV 274 Query: 315 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VM 373 E V Q NA NGL NV + EE + A D V+LDP R G V+ Sbjct: 275 ESGAGAVRDLQFNAERNGLANVRALPKTAEEYLLALEAA---PDLVVLDPPRTGLGKTVV 331 Query: 374 QQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 +++ +L P ++ V+C+PATLARD L+ AGY + ++ ++D+FP T HLE++V + Sbjct: 332 KRLSELRPRQVTIVACDPATLARDLAGLVAAGYRVEKMTLVDLFPQTYHLETVVRLT 388 >UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G9_UNCTG Length = 449 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 116/452 (25%), Positives = 192/452 (42%), Gaps = 37/452 (8%) Query: 11 TTTRQIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + +II VS + G+ + R +G LF GLLP E A+V V ++KK + A + Sbjct: 2 SLKNKIINVSAEKIVFPGRSLCRCSDGIVLFSEGLLPGEAADVLVIKEKKTFREALLKNI 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV----IADVPW 125 S S ER P CP FG CGGC Q+ S + Q + K ++ L+ ++ I+ W Sbjct: 62 TSKSAERIEPLCPSFGFCGGCSFQNISYESQIKYKQEYISELLNFAGVKISKILISPQIW 121 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLGS-- 182 YR + S +G G + V V C I ++ V+ Sbjct: 122 HYRNKMEFSF--FNNKGIADLGLHCKGMFNRYVSVPPCFIADKGFLQVVETVKRFANGNN 179 Query: 183 ---LQAMRHLG---HVELVQATSGTLMILRHTAPLSSADREKLERFSHS---EGLDLYLA 233 H G H+ L +A + ++ + + LE +Y Sbjct: 180 FSVYNNKTHEGFFRHLVLRKAGNNNQFLINVITNVVDCESVFLEPLIKELSEFSCSIYWT 239 Query: 234 PDSEILETVSG-------------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + + V E SP F Q N+ + + L Sbjct: 240 SNGRKSDAVLADRLTLMCGKPFITERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILR 299 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 L+ +LDL+CG G + +A V+GVE + ++ ++NA N + N FY Sbjct: 300 LLNPSKYTVLLDLYCGTGAIGISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYA 359 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSE 399 + E+ + + K+ FD V++DP R+G +++ +++ + RI+YVSCNP+TLARD + Sbjct: 360 SDAEDWIKE---NKSCFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARDLQ 416 Query: 400 ALLKAGY-TIARLAMLDMFPHTGHLESMVLFS 430 + + I + +DMFP T H+E++VL Sbjct: 417 LITENSKCKIKEIIPVDMFPQTYHIETVVLLE 448 >UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2 Tax=Aquificaceae RepID=Y257_AQUAE Length = 425 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 120/432 (27%), Positives = 205/432 (47%), Gaps = 25/432 (5%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + + ++V L G G +R NGK +F+ P+E E V ++KK Y A V + L Sbjct: 2 KDKPLKLTVEKLVYGGYGFSRLNGKAVFVRFASPKELVEAKVVKEKKDYTEAVVTKVLIS 61 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSEVIADVP---- 124 SP R CP++G CGGCQ QH + + Q RSK L R+ K ++P Sbjct: 62 SPARRKAPCPYYGECGGCQIQHLNYEEQLRSKKDILLESLERIGKIKEVPYEGEIPSKKE 121 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 + YR R + K Q+ ++GF + ++VDV++C + ++ L+P +R L ++ Sbjct: 122 FNYRVRVQF------KIQENRVGFYRWDVKEVVDVEECLLAHERINELIPHIREVLKVIK 175 Query: 185 AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE---GLDLYLAPDSEILET 241 ++ + HV + + + E G+ Y + +++ Sbjct: 176 DLQEV-HVNYSPTRDEATLKFVTITHTDEKLLQNILENVLPEWVVGIGDYGKVGNSLVKR 234 Query: 242 --VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN 299 V E + D + S F QVN + + + L++ + + LDL CG+G Sbjct: 235 YKVGREHIFMDVGKWQYRVSNDSFFQVNYTLWEDFLKEVLDFSESYKKG--LDLHCGVGF 292 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 359 FT+PL+ Q + G + P+ ++ + NA++N NV F + + ++ + Sbjct: 293 FTIPLSEQGNFIEGADANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRRI--GEVINL 350 Query: 360 VLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 V++DP R+G ++K +P +IVY+SCNP T ARD + L K GY + RL ++D FP Sbjct: 351 VVVDPPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFP 410 Query: 419 HTGHLESMVLFS 430 T H+ES+ L Sbjct: 411 QTYHIESIALLE 422 >UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bacteria RepID=A9KP69_CLOPH Length = 463 Score = 348 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 109/460 (23%), Positives = 190/460 (41%), Gaps = 54/460 (11%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE-TP 79 V ++ +G+ + + + + + + V + +K + +++ + S Sbjct: 11 VERIEFPNKGIVMVDDEKIIVKNAITGQKVRFVVNKVRKGKSEGRLLEVVEKSSLETKEA 70 Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIA--------------DVPW 125 C HFG CGGC Q + Q + K+ + +L + EVIA + + Sbjct: 71 VCSHFGDCGGCTYQTIPYETQIKIKADQVKKL----IDEVIATDNKEYEFQGIEGSPLEF 126 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRAC----- 179 GYR + S K L +G K GS DIV C ++ +L V + Sbjct: 127 GYRNKMEFSFGDEFKDGPLALGLHKKGSFYDIVTTSDCKLVHEDYNRILGCVLSLAKEYN 186 Query: 180 LGSLQAMRHLGHVEL----VQATSGTLMILRHTAPLSS-----------ADREKLERFS- 223 L M H G++ A +G +++ T ++ RE L+ S Sbjct: 187 LNYYHKMSHEGYLRHLLIRRAARTGEILVSLITTSQTNVLVNGEEEFLNKLRESLKNLSL 246 Query: 224 --------HSEGLDLYLAPDSEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKM 274 H+ L S+ + + G + + + GL+ S F Q N+ + + Sbjct: 247 EGSIVGILHTVNDSLADVVQSDRTDILDGQDFIFEEVLGLKFKISTFSFFQTNSLGAEVL 306 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 +++ + + DL+ G G LA A V+GVE V V ++NA LN L Sbjct: 307 YNCVRDFVGETKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLT 366 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPAT 393 N F ++ + + + D ++LDP R G + +II R+VY+SC P++ Sbjct: 367 NCEFIAGDVLKVIDT---IEEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCKPSS 423 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 LARD L + GY + ++ +DMFP T H E++ L +R K Sbjct: 424 LARDLVVLQERGYWVEKVRCVDMFPCTVHTETVCLLNRTK 463 >UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=88 Tax=Lactobacillales RepID=Y1717_STRR6 Length = 451 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 105/450 (23%), Positives = 195/450 (43%), Gaps = 30/450 (6%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 +Q I + + + G+G+ + +F+PG L E+ +T ++ + AK+++ Sbjct: 2 NLKVKQKIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEDIYCQITSIRRNFVEAKLLKV 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---------HDVSEVI 120 S R P C + CGGCQ H D Q K+ L + +K +++ I Sbjct: 62 NKKSKFRIVPSCTIYNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTI 121 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 Y RA+L Q++ G S +V++K C + + + + ++ L Sbjct: 122 GMQEPKY-YRAKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELL 180 Query: 181 GSLQAM----RHLGHVELVQAT----SGTLMILRHTAP---LSSADREKLERFSHSEGLD 229 Q R + V + +G + I+ T L+ +E ++ F + Sbjct: 181 TYHQIPITDERKVLGVRTIMVRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVA 240 Query: 230 LYLAPDS------EILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 + E E + G E + SPR F Q+N + + + A++ L Sbjct: 241 VNTNTAKTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKAL 300 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 DV ED ++D +CG+G A + ++ G++ +P +E ++NA+ G N + Sbjct: 301 DVDKEDHLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGT 360 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 EE + + D +++DP R G ++ I+ P ++VY+SCN +TLARD L Sbjct: 361 AEEIIPRWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRL 420 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 ++ Y + + +DMFPHT E++V + Sbjct: 421 VEV-YDLHYIQSVDMFPHTARTEAVVKLIK 449 >UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=16 Tax=Fusobacterium RepID=Y1713_FUSNN Length = 464 Score = 346 bits (889), Expect = 7e-94, Method: Composition-based stats. Identities = 97/436 (22%), Positives = 198/436 (45%), Gaps = 32/436 (7%) Query: 26 SFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFG 85 G+G+ +NG +F+P +P++ E+ + KK YAR + + SPER F Sbjct: 29 FGGEGLGYYNGFAVFVPMSIPEDELEIEIISIKKTYARGLIKNIIKASPERIDNHKFTFE 88 Query: 86 VCGGCQQQHASVDLQQRSKSAALARLMK-------HDVSEVIADVP-WGYRRRARLSLNY 137 GC + Q + K + +++ ++S+V+A + YR + + Sbjct: 89 DFYGCDFAMLKYESQLKYKRFMVEEVIRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSV 148 Query: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-----LQAMRHLG-- 190 ++ GF K S ++ +V + + + ++ +++ L H G Sbjct: 149 YA--NKIITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGIL 206 Query: 191 -HVELVQATSGTLMILR--HTAPLSSADREKLERFSH--SEGLDLYLAPDSEILETVSGE 245 ++ + ++ M++ ++ ++ ++ L + E +Y++ +S+ TV GE Sbjct: 207 RNIMIRTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIKSIYISLNSKKTNTVIGE 266 Query: 246 MPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + N + SP F Q+N +++ A+ + D ++D + G Sbjct: 267 KNILIYGEKSIKENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSG 326 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 G + +A +A V +E V + E G++ A+ NG++N+ F + +E+++ K Sbjct: 327 TGTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEKELVKLVNNNQK 386 Query: 357 FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 D ++ DP R G ++ ++ +L +VY+SCNP+T ARD + + GY + +L +D Sbjct: 387 IDTIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVLKKLQAVD 446 Query: 416 MFPHTGHLESMVLFSR 431 MFP T H+E + L R Sbjct: 447 MFPQTSHIECVGLIER 462 >UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Coriobacteriaceae RepID=C8WGH7_EGGLE Length = 461 Score = 346 bits (889), Expect = 7e-94, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 203/467 (43%), Gaps = 41/467 (8%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKK 59 M + KR T+++ + + V R GK +F+ G P + A + + EDK Sbjct: 1 MDETEKQKRDLGVFMEETITIERMGYGSEAVGRLESGKAVFVEGGAPGDVAALEIVEDKP 60 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA-------RLM 112 +ARA++ R + S R PRC CGGC QH S D Q +K A +A + Sbjct: 61 TFARARIARLVKPSELRVRPRCEAGAACGGCPWQHLSYDAQLEAKRANVAAALERTAKFG 120 Query: 113 KHDVSEVIAD-----VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAP 167 + E++ WGYR + L + + Q+GF + G+ DI CP+ Sbjct: 121 RERAEELVRPCLPSKRQWGYRNKLELGAA-MDERGTFQLGFHREGAHDIASPGACPLAHD 179 Query: 168 QLEALLPKVRACLGSLQAMRHLGHVEL---VQATSGTLMILRHTAPLSSADREKLERFSH 224 + +R L Q LG + +G L + T+P S + Sbjct: 180 AIAKAPKALRGALRFAQGSADLGIFRVGVRHSLHTGDLEVALWTSPGSFPRGHIAKTVKS 239 Query: 225 SEGLDLYL--------APDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMV 275 + + A + +ET+ G+ W + G R S F QVN +K++ Sbjct: 240 AVKATSIVRVMADPGKARKIKGVETLDGKGCWEEQLGDARYLASAPSFFQVNTAQAEKLI 299 Query: 276 ARALEWLDVQPEDR---------VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 A +E L + + + DL+ G G F++PLA A V+ VE + V ++ Sbjct: 300 ACVIEGLGGRMGEDGPEGLDDLLIADLYAGGGTFSVPLAQAGAEVLAVEAAGSSVRDLRR 359 Query: 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIV 385 NA +N + + + ++ + G D +++DP RAG A GV++ I P R+ Sbjct: 360 NADMNRVD-LEVIGGDAARELPEL----GGLDALVVDPPRAGLADGVVESIAAAAPERVA 414 Query: 386 YVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 YVSCNPAT ARD GY + + +DMFP T H+E + +F R+ Sbjct: 415 YVSCNPATWARDVARFESQGYRLTSVQPVDMFPQTYHVEVVSVFERL 461 >UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS6_PETMO Length = 446 Score = 346 bits (888), Expect = 9e-94, Method: Composition-based stats. Identities = 113/448 (25%), Positives = 199/448 (44%), Gaps = 35/448 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 + + + + L G G+AR+ K + + P E V T K A + L S Sbjct: 3 NEEVKIVIEKLVYGGYGMARYADKIYMVNNVYPGEFVSVIPTRTNKNLVFADLKEILQPS 62 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHD---VSEVI-ADVPW 125 +R + +C HF CGGCQ Q +SK L R+ K D V+++I +D+ W Sbjct: 63 HQRVSSKCKHFPECGGCQWLDYDYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIW 122 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ- 184 GYR R + + +L++G A S++++D+ CPI + + K R + L Sbjct: 123 GYRNRMEYTFQ---ENNKLKLGLNIANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNI 179 Query: 185 ----------AMRHLGHVELVQATSGTLMILRHTA--PLSSADREKLERFSHSEGLDLYL 232 ++HL ++I+ +T P ++ ++ H L + Sbjct: 180 EIYDKKTKKGILKHLVIRRSFSKNQTMVIIVTNTEYLPYEEEIKQFFQQNFHPYSLIHLM 239 Query: 233 APDSEIL-----ETVSGEMPW-YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL--DV 284 ++ +T+ GE + + + P F Q N V QK++ LE+ + Sbjct: 240 NSSDSVVLRGPYKTLLGEGVLNEEFDDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNA 299 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 Q + +LDL+ G+G F++ + + VE V+ N+ +N +NV F + + Sbjct: 300 QKDATMLDLYSGVGLFSIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILASSK 359 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 + K + FD V+LDP R G +Q + + I+YVSC+P+T ARD K Sbjct: 360 PYLMKNSSKR--FDYVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTK 417 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSR 431 G+T+ + DMFPH+ H+E++ + + Sbjct: 418 NGFTLKSVQPFDMFPHSYHIENVGILEK 445 >UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=Lactobacillales RepID=B1MWX6_LEUCK Length = 498 Score = 346 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 116/453 (25%), Positives = 196/453 (43%), Gaps = 35/453 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 Q +++ L G+G+ K +F+PG+LP E A V VT+ + +Y AKV++ Sbjct: 47 VRIGQNFPLTIKRLGINGEGIGYFKRKIVFVPGVLPDEVAVVKVTDVQPKYIAAKVLKIR 106 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE----------VI 120 SP R P GG + +H + Q K +A+ ++ + + Sbjct: 107 EKSPNRVKPLDTFADEVGGFELEHMTYSAQLAFKKDVIAQSLEKFQPKGWSDYDLRDTIG 166 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 P+ YR +A+ + + L +G K GS ++VD+ +P +L VR L Sbjct: 167 MANPYEYRNKAQFPVRKI--DDVLSVGMYKRGSHELVDLPIVHTQSPATMKVLRTVRDLL 224 Query: 181 GS-----LQAMRHLGHVELVQA----TSGTLMILRHT--------APLSSADREKLER-- 221 ++ G V+ + A T+G + + T L +A + L Sbjct: 225 DKLSVSIYNEDKNRGTVKTIVARVSHTTGDVQLTFVTNTDGFPGDVALIAAINQALPEVN 284 Query: 222 --FSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 F + L E ++ + G SPR F+Q+N + AL Sbjct: 285 GIFQNFNPGRTSLVWGEETIKLWGKDYIEETVMGKTFQLSPRAFMQLNHTQMTVVYNEAL 344 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 L++ D+++D + G+G L LA +A V G+E +P V+ NA++N + N + Sbjct: 345 SALNLTHADKLVDAYAGVGTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYE 404 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVM-QQIIKLEPIRIVYVSCNPATLARDS 398 E K D +++DP R G + ++II+ +P + VY+SCN +TLARD Sbjct: 405 VGTAEVLFPKWQAEGWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDL 464 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L KA Y + + +DMFP T E +V +R Sbjct: 465 VDLTKA-YKVDYIQSIDMFPQTARWEGVVKLTR 496 >UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFJ7_ACHLI Length = 451 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 107/453 (23%), Positives = 184/453 (40%), Gaps = 35/453 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 +++ I+ + V + G+G+ + +FI LP E +TE A AKV+ Sbjct: 2 QQKIRLNDILEIDVKRMGINGEGIGYYERLAIFIDNALPGEKVLAQITEVFPNRATAKVL 61 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE--------- 118 + L SP R P CP + CGGCQ QH + K + + + V Sbjct: 62 QTLEKSPNRVKPLCPVYDACGGCQVQHFDYNAMLNQKKDIIKKALDRYVKRYDAHIISDT 121 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 + D P YR +A L L + + + G S+ V + C + ++ + + + Sbjct: 122 IGMDNPKNYRNKASLPLRLI--DNKNRFGMFARNSNAFVPINTCGVQHTKINDIFTTMTS 179 Query: 179 CLGSLQAMRHLG----------HVELVQATSGTLMILRHTAPLSSADREKLERFS-HSEG 227 + + V + + + + + D E H E Sbjct: 180 LMDRYHIDAYDPVLQTGIISHAIVRITENLNEVQVTFILSKAFDGLDNLVHELVKLHPEI 239 Query: 228 LDLY--LAPD------SEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARA 278 + +Y + PD +E + + G EM G + SP F Q+N K Sbjct: 240 MSIYKVINPDVRQSYFTEDIHLIYGKEMIEEQLGGHTFSLSPDAFFQLNTSQADKFYNEM 299 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 ++P + V+D + G+ + + A + +E V+ + + N + NVT Sbjct: 300 KRLAQIKPTEIVVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTV 359 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARD 397 N E+ + D +L DP R+G V+Q I+K +P R+VY SCNP+TLA+D Sbjct: 360 IENNFEDALDNL--KDIKIDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAKD 417 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 LL+ Y + + +DMFP+T +ES+ L Sbjct: 418 LSLLLED-YDLKHITPIDMFPYTSLVESITLLE 449 >UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase RumA n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D2C9 Length = 470 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 121/469 (25%), Positives = 213/469 (45%), Gaps = 47/469 (10%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 S K+ T +I V D + G+ VA+ +G+ +FI +P + +V T+ K Y Sbjct: 2 SKKKNITIENVI---VTDAGAKGKSVAKAPDGRIIFINNAIPGDVVDVQTTKKKSAYYEG 58 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSE-- 118 + S R TP C HFG CGGC+ Q + + Q K + RL K + E Sbjct: 59 FATKFHEYSNRRVTPVCAHFGYCGGCKWQDMNYESQLFYKQKEVENNLVRLGKITIPELM 118 Query: 119 --VIADVPWGYRRRARLSLNYLPK------------TQQLQMGFRKAGSSD-IVDVKQCP 163 V ++ + YR + S + + Q+ +GF AG+ D I+D+ +C Sbjct: 119 PIVASENIYFYRNKMEFSFSDMRWLTPEEIQNADTIEQRNGLGFHIAGAWDKILDIDKCY 178 Query: 164 ILAPQLEALLPKVRAC-----LGSLQAMRHLGHVE---LVQATSGTLMILR----HTAPL 211 + A+ +++ + + G + + +++G +M++ + Sbjct: 179 LQEDPSNAIRLEIKRFALENNIAFYSPRQQTGVLRSMMIRISSTGEIMLVIQFFSDSKKC 238 Query: 212 SSADREKLERFSHSEGLDLYLAP-------DSEILETVSGEMPWYDSNGLRLTFSPRDFI 264 + + F L + D ++ + + + GLR + + F Sbjct: 239 NLLLEHIAQTFPQITSLQYCINSKGNDAIYDQDLKIYKGTDCIYEEMEGLRFKINAKSFY 298 Query: 265 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 Q N+ K+ ++ D++ ++ V DL+ G G +A +A VVGVE VP + Sbjct: 299 QTNSKQAHKLYQITRDFADLKGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAIADA 358 Query: 325 QQNARLNGLQNVTFYHENLEEDVTKQPWAKNG-FDKVLLDPARAGAA-GVMQQIIKLEPI 382 + NA+ NG++NV+FY +++ NG D ++ DP R G V++QI+++ P Sbjct: 359 KANAKANGIENVSFYVGDMKNVFNDTFIKANGTPDVIITDPPRDGMHKDVVEQILQIAPP 418 Query: 383 RIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +IVYVSCN AT ARD LL Y + ++ +DMFP T H+E++VL + Sbjct: 419 KIVYVSCNSATQARDLA-LLDEMYKVTKVQPVDMFPQTYHVENVVLLEK 466 >UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Roseiflexus RepID=A7NGT5_ROSCS Length = 439 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 126/432 (29%), Positives = 193/432 (44%), Gaps = 24/432 (5%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 +T + ++++ + G+ V R + +F G +P E V + E + YAR V+ L Sbjct: 15 STWPDTLELTLDGIAQGGEAVGRWQNRVVFAAGGIPGERVVVRLRERHESYARGDVIDVL 74 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEV----IAD 122 SP+R PR P QH + D QQR + LA+ D + V A Sbjct: 75 LASPDRVAPRLPGASH---MPWQHIAFDAQQRLRRQILADQLAKFAGVDPAVVEATAFAS 131 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 PW YR RL + ++G+ ++ + I ++ P+L P L L +R+ L Sbjct: 132 KPWEYRNNTRLHCDGR------RIGYYESNTRSIAELDHDPLLHPVLNEALAALRSALAD 185 Query: 183 L--QAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 A + + +A + LR S R G+ ++ P +L Sbjct: 186 ELDDAPPLEVTLRVSEAYGYCIAALRGRGDRRSLAARWRARCPVLAGV-VFTVPPPHMLP 244 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 + + + L P F QVN ++ L + R+LDL+CG G F Sbjct: 245 PLGADTLVEELADLTFLLRPTTFFQVNVAAAATLLNLIRAGLGDEARGRLLDLYCGAGAF 304 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 TLPLA A +VGVE V +++A +N + NV F + E + FD V Sbjct: 305 TLPLARNAIEIVGVEEYAGAVADAERSAAVNHISNVRFITGSAEAVLANL---DGPFDAV 361 Query: 361 LLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 +LDP R G V+ +I+ P RIVYVSC+PATLARD + L+ GY + R +D+FP Sbjct: 362 VLDPPRRGCHPRVLHALIERAPRRIVYVSCHPATLARDLKTLIAGGYAVVRATPVDLFPQ 421 Query: 420 TGHLESMVLFSR 431 T H+ES+V R Sbjct: 422 TPHIESVVALMR 433 >UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=Sulfurihydrogenibium RepID=C1DTC8_SULAA Length = 420 Score = 344 bits (883), Expect = 4e-93, Method: Composition-based stats. Identities = 107/424 (25%), Positives = 198/424 (46%), Gaps = 20/424 (4%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 V ++ + G G+A+ + K F+P L E E+ V ++KK Y+ + + + SPER Sbjct: 5 VKIDKIVYGGYGLAK-DDKVYFVPYTLEGEEVEIEVVQEKKDYSLSNPINIIKPSPERVE 63 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVS--EVIADVPWGYRRRAR 132 P C +F +CGGC QH + Q K L R+ K D+ +V P+ YR + + Sbjct: 64 PVCKYFTLCGGCDFQHIPYEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQ 123 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHV 192 GF + S+ ++D+ C +L ++ ++ L V Sbjct: 124 FKF------DGKNFGFYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFLFKYALSPSQVIV 177 Query: 193 ELVQATSGTLMILRHTAPLSSADREKLERFSHS--EGLDLYLAPDSEILETVSGEMPWYD 250 + + + K+E + E + D + + + GE ++ Sbjct: 178 FSNSKNQKLIKFVFPDNSQIANIIPKIEIYKDEIDENIKGIGFYDKKKRQLLLGEYVIFE 237 Query: 251 S-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 + + + S F QVN + ++ ++ + + R +D +CG+G F++PLA Sbjct: 238 TVDNYKYRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAVDFYCGVGTFSVPLANYVR 297 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 V+G+E V+ + N R N L+N+ F E+ + + + V+ DP R+G Sbjct: 298 EVLGIESNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGL--KYAKDFKPEVVVFDPPRSGL 355 Query: 370 AG-VMQQIIKLEPI-RIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 ++++I K+E I +I+Y+SCNP+TLARD + + G+ +++M+DMFP T H+ES+V Sbjct: 356 NKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKVSMVDMFPQTHHIESVV 415 Query: 428 LFSR 431 + + Sbjct: 416 VLEK 419 >UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 Tax=Streptococcaceae RepID=YWFF_LACLA Length = 513 Score = 343 bits (880), Expect = 7e-93, Method: Composition-based stats. Identities = 98/475 (20%), Positives = 192/475 (40%), Gaps = 55/475 (11%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 Q + + + + G+G+ +G+ +FIP LP E V +TE+ + ++RAK+V+ Sbjct: 3 NLKIGQKLQLEIERMGINGEGIGVISGRLVFIPYALPGEEVLVEITENARNFSRAKLVKI 62 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE----------V 119 + SP R P+ + H S +Q K + + ++ + Sbjct: 63 IEKSPNRVKPQDRAYHEMSQSHIMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATL 122 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 + GYR + + + L + G + G+ +V++ C + P+ + ++ + Sbjct: 123 GMENTLGYRNKLQFQVRRLN-DGTVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRL 181 Query: 180 LGSLQAM----RHLGHVELVQAT----SGTLMILRHTAPLSSADREKLERFSHS------ 225 + R +G + V +G + I+ T+ D + Sbjct: 182 IEKFDLPVYDERKIGGIRTVMVRRSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQK 241 Query: 226 ------------------EGLDLYLAPDSEILETVSGEMPWYDSN----------GLRLT 257 E + + + + GE N Sbjct: 242 NSFVKFDKMLSALTEEFEEIVTVAVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFE 301 Query: 258 FSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 SPR F Q+N+ + A++ L+ + +DRV+D +CG+G +A + SV G++ Sbjct: 302 LSPRAFYQLNSEQANVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDIT 361 Query: 318 PALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQI 376 P + ++NA+ GL+N + E + + + +++DP R G +++ I Sbjct: 362 PESIFDARENAKRLGLKNCHYEIGKAERIIPNWNKSGHRATAMIVDPPRTGLDDALLETI 421 Query: 377 IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 K P ++VYVSCN +TLA+D L Y + + +DMFPHT E++V ++ Sbjct: 422 TKFPPEKMVYVSCNVSTLAKDLVVLANF-YKVEYIQSVDMFPHTARTEAVVKLTK 475 >UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRS2_PERMH Length = 421 Score = 342 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 115/434 (26%), Positives = 207/434 (47%), Gaps = 30/434 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + L G+G+ + +G+ F+P +LP E EV + ++KK + + + + SP R Sbjct: 1 MIVKIEKLVYGGKGIGKLDGRVCFVPFVLPDEEVEVEIKKEKKSFIECEPLSIVEKSPFR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSEV----IADVPWGYR 128 P C +F CGGC QH + + Q K+ L R+ + ++ + + P+ YR Sbjct: 61 TDPPCRYFRYCGGCDYQHITYEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYR 120 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 R +L + +GF S I+++ C +L + ++ VR L L + Sbjct: 121 NRTQLKIRGEK------IGFYMRESRQIINIDSCLLLKEDINGMISGVREILKFL--IFQ 172 Query: 189 LGHVELVQATSGTLMI-LRHTAPLSSAD--REKLERF--SHSEGLDLYLAPDS-EILETV 242 V + ++ G ++ + + + L F +G +Y D + + Sbjct: 173 PEQVHIYSSSDGEALVKFVYQKRVRRFPLGLKHLRSFLSEKLKGAGIYHRKDDLLKRDVL 232 Query: 243 SGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 GE Y+ G++ S F QVN + ++ L+ ++ ++ +DLFCG+G T Sbjct: 233 LGESYIYEEYGGIKFRVSMDSFFQVNVYQVENLLDAVLQ--NIGDHEKAVDLFCGVGTLT 290 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 LP A + G+E P V N +LN ++N F+ + + A+ D V+ Sbjct: 291 LPSARYIKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDANR--SGGFIAELKPDLVI 348 Query: 362 LDPARAG-AAGVMQQIIKLEP-IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 +DP R G + +++ + + RI+YVSCNP+TLARD L K Y++ ++ M+DMFP Sbjct: 349 IDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYL-KERYSVEKVYMIDMFPQ 407 Query: 420 TGHLESMVLFSRVK 433 T H+ES+V+ ++K Sbjct: 408 TYHIESVVVLQKMK 421 >UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=27 Tax=Lactobacillus RepID=Y1606_LACJO Length = 459 Score = 342 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 101/460 (21%), Positives = 192/460 (41%), Gaps = 38/460 (8%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M +F K+ I +++ L G+G+ + K +FIPG LP E + + Sbjct: 1 MTKFTKNKQEKN----IIITIKRLGINGEGIGYYKKKIIFIPGALPNEVVVAKIVDRHPH 56 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL---------ARL 111 Y ++VR SP+R T GG + H S Q K + Sbjct: 57 YLEGELVRIKEKSPDRVTFPKGVDPAVGGLELAHLSYPKQLEFKQHLILESLRKYHPRDY 116 Query: 112 MKHDVSEVIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLE 170 +K+ V + I W YR +A+ + + + ++G S ++D+ P + + Sbjct: 117 IKYKVKKTIPTPNAWNYRNKAQYQIEF--NKGKSKLGLYAPNSRRLIDLPDMPTQTKETQ 174 Query: 171 ALLPKVRACLGSLQAM-----RHLGHVELVQAT----SGTLMILRHTAPLSSADREKLER 221 + +++ + L RH ++ + +G + + T D + L Sbjct: 175 KVEREIKKLIDKLHIRIADFRRHTDGIKTIAVRQSNATGEIQVTLITIGKKIKDLKLLAS 234 Query: 222 -----------FSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGV 270 F + ++ ++ + G + SPR F Q+N Sbjct: 235 HIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFGKSHITEEILGKKFKLSPRAFFQLNPEQ 294 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 + + AL++LD+ P+ ++D + G+G + + Q V+G+E +P V Q+N RL Sbjct: 295 TTTLYSEALKYLDLTPDQTLIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRL 354 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSC 389 N ++N + N+E+ + + + +++DP R G +++ +++++P VYVSC Sbjct: 355 NHVRNAEYIQGNVEKLLPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSC 414 Query: 390 NPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 NPATLA+D LL Y + + +DM P T E + Sbjct: 415 NPATLAKDL-VLLSDAYDVRVIQPVDMMPQTPRWEGVTKL 453 >UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chloroflexus RepID=A9WK13_CHLAA Length = 416 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 127/428 (29%), Positives = 189/428 (44%), Gaps = 29/428 (6%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 I + + + G GV RH +F+ G LP E T+TE ++ RA V L + Sbjct: 2 HDTIELEIEGIAQGGDGVGRHGDLVVFVTGALPGERVRATITERHTRFLRATVCDILRAA 61 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI--------ADVPW 125 PER P+ QH + Q R K +A ++ + ++ A PW Sbjct: 62 PERVEPQIK---PGDHAPWQHIAYPAQVRYKGIIVADQLRKFLPDITIPIQPVIAAPHPW 118 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 GYR ARL + +G+ AG+ +VD+ P+L P L L +R L Sbjct: 119 GYRNSARLHV------DGATLGYHAAGTKTVVDLADDPLLLPALRDTLRSLR----RLAF 168 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHS-EGLDLYLAPDSEILETVSG 244 + V L + + R +P A+R L R + + + LA + E G Sbjct: 169 AGLIKEVTLRASATYGYAAAR-LSPTPDAERHALWRLATAWKASTPVLAGVTLEDEPFVG 227 Query: 245 EMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 YD G+ S F QVN ++MVA + L R+LD + G+G+F LP Sbjct: 228 TPFVYDELAGVIFRLSLGSFFQVNHAQAERMVAVVRDALAPHGG-RLLDAYSGVGSFALP 286 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA V+ VE VE G+Q+A N + NV F + E V F V+LD Sbjct: 287 LARCYDEVIAVEAYQPAVEDGRQSAIDNQITNVQFINGAAEHTVAHLS---GPFHAVILD 343 Query: 364 PARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 P R G +++ II P +IVY+SC+P + RD LL AGY I + +D+FP T H Sbjct: 344 PPRRGCHPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQTPH 403 Query: 423 LESMVLFS 430 +E+++ Sbjct: 404 IETIIHLR 411 >UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE25_KOSOT Length = 440 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 121/441 (27%), Positives = 184/441 (41%), Gaps = 33/441 (7%) Query: 20 SVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 +V L S G AR NGK + + LP E E + K+ K VR + SP+R+ Sbjct: 5 TVEKLISDGYSFARDENGKVVLLTEGLPGETVEAVKLKGKESVEFWKTVRVVQSSPDRKI 64 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVPW----GYRRR 130 C F CGGC Q K R+ K +P YR R Sbjct: 65 KGCKGFPDCGGCDWGGLQYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNR 124 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-- 188 K +++ G K S+++VDV+ C + + L + Sbjct: 125 MEYVAYQ--KGKKIGFGMYKRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNR 182 Query: 189 ------LGHVELVQATSGTLMILRHTAPLSSADREKL-----ERFSHSEGLDLYLAPDSE 237 L H+ L +G ++ L T S + +K+ E+ L + Sbjct: 183 ESKRGFLKHLVLRGNRNGDIVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDD 242 Query: 238 IL-----ETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 ++ + GE ++ G P F Q N V ++++ + L+ P + L Sbjct: 243 VVLRGPYRVIYGEGIITETLGDAVFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFL 302 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DL+ G+G F A VV VEG+ NAR+N + N+ + + + + K Sbjct: 303 DLYSGIGTFAFYFARMFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDFLEK-- 360 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 + FDKV+LDP RAG ++ I K P RIVY+SCNP TLARDS L G+++ L Sbjct: 361 -NEEKFDKVILDPPRAGIGKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKAL 419 Query: 412 AMLDMFPHTGHLESMVLFSRV 432 DMFP T H+E + +F+RV Sbjct: 420 RAFDMFPDTHHVEVVAIFNRV 440 >UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firmicutes RepID=C4Z8S6_EUBR3 Length = 470 Score = 340 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 116/463 (25%), Positives = 198/463 (42%), Gaps = 50/463 (10%) Query: 18 TVSVNDLDSFGQGVA-RHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 T +V +D +G+A +G + + +P + E V + K Q A +++ + SP Sbjct: 8 TGTVERVDFPNKGIAVTDDGDRVIVKNTIPGQKVEFVVNKVKHQRAEGRLMEVIEKSPLE 67 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS-------EVI----ADVPW 125 CPHFG+CGGC Q + Q K + +L+ + E I + Sbjct: 68 TEEPCPHFGMCGGCTYQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKS 127 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKV-----RAC 179 YR + S K L +G K GS D+V V C I+ +L + Sbjct: 128 EYRNKMEFSFGDEYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNN 187 Query: 180 LGSLQAMRHLGHVELV----QATSGTLMI-LRHTAPLSSADREKL--------------- 219 + H G++ + +G +++ L T + E+L Sbjct: 188 IPYFHRATHKGYLRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDG 247 Query: 220 --ERFSHSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVA 276 + H++ + +E E + G+ +Y+ GL+ +P F Q N+ + + Sbjct: 248 RFKGVLHTKNDSVADVVKNEGTEVLYGDSYFYEKLLGLKFKITPFSFFQTNSLGAEVLYE 307 Query: 277 RALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN 331 A E++ D V DL+ G G +A VVGVE V V ++NA LN Sbjct: 308 TAREFILGDNKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALN 367 Query: 332 GLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCN 390 GL N F ++ + + + + D ++LDP R G + +II+ +VY+SC Sbjct: 368 GLDNCKFIAGDVLKVLDE---IEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVYISCK 424 Query: 391 PATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 P +LARD + + GY + ++ +DMFP+T H+E++VL S+V Sbjct: 425 PTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSKVN 467 >UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEE5_9DELT Length = 466 Score = 339 bits (871), Expect = 9e-92, Method: Composition-based stats. Identities = 161/453 (35%), Positives = 229/453 (50%), Gaps = 36/453 (7%) Query: 15 QIITVSVNDLDSFGQGV--ARHNGKT--LFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + T + LD G+GV A +G+ F+ LP E + + A V+ L Sbjct: 13 EPETAVIETLDRKGRGVVPAGEDGRPRQAFVHATLPGERVHFQRRDREGPSDVAGVLEVL 72 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALAR------LMKHDVSEVIADVP 124 SP R PRC H+GVCGGC H D Q K LA L E + P Sbjct: 73 ESSPLRVEPRCAHYGVCGGCSLMHLDPDEQVALKQRWLASDFEGHGLAPERWLEPLRAEP 132 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLE-ALLPKVRACLGSL 183 W YRRRARL ++ ++ +GFR+ I +++ C +LA + AL+PK+ + L Sbjct: 133 WAYRRRARLGAKWVAGKDKVVVGFREQDKRFIANLEGCEVLAGRHGGALIPKLSELIAGL 192 Query: 184 QAMRHLGHVELVQATSG----TLMILRHTAPLSSADREKLERFSHSEGLDLYLA------ 233 + VE+ A T ++ R P + DRE+L F+ +EGL ++L Sbjct: 193 SLATKIPQVEVSVADDTDGAVTALVFRVLEPPTDEDRERLRAFAAAEGLRVFLQSKGLDT 252 Query: 234 ----------PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + E E L L F P DF+QVNA +N+ M+ARA+E L Sbjct: 253 VALFADERGQTEGEGFEDARELSYALPEFELDLRFRPTDFVQVNAAINRSMIARAVELLA 312 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 ++PE RVLDLFCG+GNF+L LA +A +V GVEG LV + NA NGL N F +L Sbjct: 313 LEPEHRVLDLFCGLGNFSLALARRAGAVFGVEGDAGLVARAAANAERNGLSNARFEVRDL 372 Query: 344 EEDVTKQPWAKNGF-DKVLLDPARAGAAGVMQQIIKL---EPIRIVYVSCNPATLARDSE 399 V + W D+VLLDP R+GA +++ I ++ R+VYV+C+P TLARD+ Sbjct: 373 YTQVGELEWLGGQPVDRVLLDPPRSGALAIVEHIDRIAWAGKPRLVYVACSPETLARDAA 432 Query: 400 ALLK-AGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+ GY ++ ++DMFPHT H+ES+ LF R Sbjct: 433 VLVGTHGYRLSAAGVMDMFPHTAHVESIALFER 465 >UniRef50_C1F225 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F225_ACIC5 Length = 427 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 133/438 (30%), Positives = 193/438 (44%), Gaps = 37/438 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + G G+ARH GK +F+ LP E E + DK Y+ A+V L S ER Sbjct: 1 MKVRIEKAIYGGAGLARHEGKAVFVERSLPGELVEAEIVTDKASYSEARVTEVLEPSAER 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH----DVSE--VIADVPWGYRRR 130 CP++G CGGCQ QHAS D Q R K+A L ++ D+ E VIA PWGYR R Sbjct: 61 VAAPCPYYGACGGCQYQHASEDEQLRMKAAILQETLERARLKDLPEIQVIAGEPWGYRNR 120 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 RL + +T+ +G+R+ S + V++C I AP L + + + Sbjct: 121 IRLHV----ETKPFALGYRREQSHVTLPVEECRIAAPALVRAMQVLVEQCEA-ALAGWAR 175 Query: 191 HVELVQATSGTLMILRH---------TAPLSSADREKLERFSHSEGLDLYLAPDSE---- 237 VEL + L+++ L + + G + P + Sbjct: 176 EVELFTDDATELLLISVYADAATAKMQERLDALWERLQGALPEAAGCAAFALPAGKGFAR 235 Query: 238 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 + T G Y + GL+ S F QVN + +MVA E + DL+ G+ Sbjct: 236 RVATAGGPSLTYGAGGLQYRVSAGAFFQVNRFLVDRMVAAVCEA---RAGATAWDLYAGV 292 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA---- 353 G F L + V VE P V + NA + + K Sbjct: 293 GLFAKALVPRFEHVTAVEAAPESVADLRVNA-----PGARVVAATTLDFLRKAAQEAGKR 347 Query: 354 KNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 K D V+ DP RAG + ++ K+ P I YVSC+PATL+RD ALL++GY L Sbjct: 348 KAAPDLVVADPPRAGLGKDVTALLGKIRPRHITYVSCDPATLSRDLFALLQSGYRFRSLH 407 Query: 413 MLDMFPHTGHLESMVLFS 430 +LDMFP T H+E++ + Sbjct: 408 LLDMFPQTFHVETIAQLT 425 >UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clostridiales RepID=A9KRF2_CLOPH Length = 554 Score = 337 bits (864), Expect = 6e-91, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 171/378 (45%), Gaps = 26/378 (6%) Query: 81 CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--VSEVIA-DVPWGYRRRARLSLNY 137 CPH CGGC + Q + K +++L+ V ++ + P+ YR + + Sbjct: 178 CPHSKKCGGCHYLDLPYEEQLKIKQKQVSKLLSDFCKVHPILGMEHPYHYRNKVQAVFGR 237 Query: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH--------L 189 K + G K G+ I+ C I + + ++ +R L S + + L Sbjct: 238 DAKGN-IISGVYKEGTHQIIPTTSCLIEDKKADEIIGTIRGMLKSFKIKTYDEDSGYGLL 296 Query: 190 GHVELVQA-TSGTLMILRHTA-PLSSADREKLERF--SHSEGLDLYLAPDSEILETVSGE 245 +V + + TSG +M++ A P+ + + + +H E + L ++ + G+ Sbjct: 297 RYVLVKRGFTSGEIMVVLVIASPILPSKKNFVAALRKAHPEITTIVLNINNRTDSLILGD 356 Query: 246 MPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 G S + F QVN +++ A++ + ++RV+D +CG Sbjct: 357 RETVLYGKGYIEDTLCGNVFRISSKSFYQVNPVQTERLYQLAIKAAGLTGKERVIDAYCG 416 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +G L + A V+GVE ++ NA+ NG+ N FY+ + E + Sbjct: 417 IGTIGLVASKNAKEVLGVEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAMAEKGEK 476 Query: 357 FDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 D V++DP RAG+ + + ++P R+VY+SCNP TL RD + K GY + +D Sbjct: 477 ADVVIMDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKKGYQVKEAWPVD 536 Query: 416 MFPHTGHLESMVLFSRVK 433 MFP TGH+E++ L ++K Sbjct: 537 MFPWTGHVETVCLLYKMK 554 >UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6H3_HYDS0 Length = 415 Score = 337 bits (864), Expect = 7e-91, Method: Composition-based stats. Identities = 121/430 (28%), Positives = 197/430 (45%), Gaps = 33/430 (7%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + L G G+ R K F+P LP E ++ +KK Y+ AK+ + SP R Sbjct: 1 MIVEIEKLVHNGYGMGRFQNKVYFVPFTLPNEKVKIKDIVNKKDYSMAKLEAVVEPSPHR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGYRR 129 P CP+FG CGGC QH Q KS L +K +++ +I D P+ YR Sbjct: 61 IEPLCPYFGRCGGCHFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRN 120 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R + + ++GF D V V+ CPI + + L+P ++ Sbjct: 121 RVKFKVRNK------ELGFVGVD-EDFVKVEHCPISSKAINDLMPFLKEFAKHFN----- 168 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERF------SHSEGLDLYL--APDSEILET 241 V + + A D+EKL++F + G+ L + +I+ + Sbjct: 169 PSWISVFYSDTQKEYMVKFASYDYIDKEKLKKFKEHLTPKNVVGITLVKDDKREDKIILS 228 Query: 242 VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 + + + ++ S F QVN V QK++ LE + DRVLD + G+G F Sbjct: 229 IGTPFTFIELLKIKYRISVNSFFQVNIKVAQKLLQTLLEKENYF--DRVLDDYGGVGLFG 286 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 L LA ++ SV + + + + +A++N + NV+FY +N + K + + ++ Sbjct: 287 LHLARRSGSVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLKKSLYKHA--NLLV 344 Query: 362 LDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 LDP R+G + I+ +P I Y+SC P++LARD + LL Y I + M DMFP T Sbjct: 345 LDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLK-LLGKKYQIKEIYMADMFPQT 403 Query: 421 GHLESMVLFS 430 H+E+ V Sbjct: 404 YHIETAVKLE 413 >UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Entamoeba RepID=B0ESQ3_ENTDI Length = 479 Score = 336 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 100/454 (22%), Positives = 182/454 (40%), Gaps = 34/454 (7%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 + V+ ++ G+G+ G+ + + ++P + + + +K V + Sbjct: 25 RKKTRYEGIVDSVEFGGKGIVNFQGRRIILDNVIPGQKVSFCICKIRKGKCPGGNVEVIE 84 Query: 72 DSPER-ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE------VIADVP 124 SP C H CGGC Q Q K + ++ ++ E + + Sbjct: 85 KSPFEDIEDICKHNKECGGCLYQSMGYQQQLEMKKKQVLNMINKEIKEYQFDGIKASPIN 144 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKA-GSSDIVDVKQCPILAPQLEALLPKVRAC---- 179 GYR R + L+ G K +D+V C I+ LL R Sbjct: 145 IGYRNRMDYTFGDGYIGGPLECGLHKMYHFNDVVTTFDCRIVDKDFNKLLLFTRDYFRIK 204 Query: 180 -LGSLQAMRHLGH-----VELVQATSGTLMILRHTAPLS---SADREKLERFSHSEGL-- 228 + ++H G+ + + T+ + L ++ L+ + + KL L Sbjct: 205 NIPHYNKIKHTGYLRNLLIRKAKKTNEIMYCLITSSQLTIDLNELKNKLLELPLMGNLVS 264 Query: 229 -------DLYLAPDSEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 D+ +E + G + + GL +P F Q N+ + + E Sbjct: 265 IIHCIFDDITDIVGYNKMEILYGNDYITEELLGLHFKITPMSFFQTNSLGAEVLYQTVRE 324 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 ++ D + DL+CG G T L+ ++GVE P + + NA LN L N F Sbjct: 325 YITTTKCDIIFDLYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNCEFRT 384 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSE 399 ++ ++ + +N + ++LDP R G + +IIK I+YVSC P TL RD Sbjct: 385 ADVNNELDQL--QENRPELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLVRDLI 442 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L + GY + + ++DMFP+T H+E++ L ++ Sbjct: 443 ILEQNGYKVKNITLVDMFPNTPHIETVCLLKKIN 476 >UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37219 Length = 416 Score = 336 bits (863), Expect = 9e-91, Method: Composition-based stats. Identities = 111/413 (26%), Positives = 180/413 (43%), Gaps = 39/413 (9%) Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHD 115 +YA V + ++ S +R P CP + +CGGC H S + + R K + A AR+ Sbjct: 3 RYAYGIVEKLITPSRDRIEPVCPKYKICGGCVFMHMSYEAECRIKSNIVTEAFARIGHLV 62 Query: 116 VSEVIA----DVPWGYRRRARLSLN---YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQ 168 E++ D GYR +A+ Y T + GF S +V V C + Sbjct: 63 PKEILPIFSSDSIEGYRNKAQYPYADYKYTDNTVFPKFGFYAPRSHRLVPVTYCVLQPAA 122 Query: 169 LEALLPKVRACLGS--------LQAMRHLGHVELVQATSG----TLMILRHTAPLSSADR 216 +L LG+ G + + G +M+ TA ++ R Sbjct: 123 FGDILRHCEEELGTADFNAITPYNEESGNGVLRHLYIRQGFHSKEIMVCFVTAKDNNHIR 182 Query: 217 EKLERFSHS------EGLDLYLAPDSEILETVSGEMPW---------YDSNGLRLTFSPR 261 ++L ++ E + L + + + G+ G+ ++ SP+ Sbjct: 183 KQLTDLGNTLIADTHEIKSVMLNVNPQKTNVILGKKTVCLIGKDTIADTLCGVPVSLSPQ 242 Query: 262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321 F QVN +K+ A A + ++ +LDL+CG G L +A V+GVE VP + Sbjct: 243 SFYQVNTAQAEKLFAEAKRLAAPKKDELLLDLYCGAGAIGLSMADTVGKVIGVEVVPQAI 302 Query: 322 EKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGV-MQQIIKLE 380 E + NA+ G+ N F+ + E K D ++LDP R G + + +++ Sbjct: 303 EDAKANAKRAGISNAEFFAGDAGEIAAKFAAEGRKPDIIVLDPPRKGCDTLTLDACLEMA 362 Query: 381 PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 P RIV +SCNP+T ARD+ L + G+T+ L D FP T H+E +VL SR K Sbjct: 363 PSRIVMISCNPSTAARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSRQK 415 >UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desulfuromonadales RepID=A1ARE6_PELPD Length = 493 Score = 336 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 121/456 (26%), Positives = 201/456 (44%), Gaps = 33/456 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 + R + R + ++ LD G G++ L I G LP + + + ++ A V Sbjct: 32 RVRLSPRSTVEARISGLDDEGYGISCAENHGLRIAGGLPGDTVQAVIDHVAQRMAFGHVK 91 Query: 68 RRLSDSPER-ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHDVSEV 119 + L SP R P C C GC + Q K + R + ++ + Sbjct: 92 KILVASPLRSRRPPCRESAHCLGCPLIAMNYCDQAEWKRQFVLRQLDAYRGLDGIELHPL 151 Query: 120 IADVPW-GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 ++ YR RL++ K + +G + S D+VD+ CPI + ++ VR Sbjct: 152 LSPRRLTNYRTTVRLTIA--GKYAEPYIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRR 209 Query: 179 CLGSLQAMRHLGHVEL---------VQATSGTLMILRHTAPLSSADREKLERFSHSE--- 226 + L+ + + V M++ TA S + L R+ + Sbjct: 210 GISRLKVPVYSPRNRVGLLRYLVVRVSEAEQKAMVVFVTARRSYNEIHHLARYVREQLPE 269 Query: 227 ----GLDLYLAPDSEIL----ETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVAR 277 ++ + + I+ ++ + + G + L SPR F+QVN + R Sbjct: 270 VEVVAQNVNSSEGNVIMGPVDHFLTPKHHLTERIGEVSLMISPRSFLQVNRDGACLIYER 329 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 EW + + VLDL+CG+G L LA +A V+GVE V A VE ++NAR+NG+ N Sbjct: 330 VAEWARLTGRETVLDLYCGIGGIALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCV 389 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLAR 396 F ++ E + + G D V+L+P R G V++Q+ L P ++YVSC+P TLAR Sbjct: 390 FQAGDVAEQLEELAEDGEGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLAR 449 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 D L GY + +DMFPHT H+E++ +V Sbjct: 450 DLNLLKSLGYVCVEVQPVDMFPHTMHVENVARLEKV 485 >UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8N4_9FIRM Length = 457 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 103/437 (23%), Positives = 189/437 (43%), Gaps = 28/437 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + ++ G+G+A H GK +FI +P+E E + D+ Y ++ R + S +R Sbjct: 1 MKTTIKKWGINGEGIAFHEGKPVFIENAIPEEVIEFDIKSDENTYLIGEMTRLVEQSSKR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHDVSEVIADVPWGYRR 129 P CP + CGGC H Q + K L + + + P YR Sbjct: 61 RYPLCPIWKECGGCALMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLSYRN 120 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-----LQ 184 +L + +L G + ++ +++C + + LE V + Sbjct: 121 SCKLPFG--EEYGELYTGMYERDTNHFQKMERCYVHSKLLEQTRQAVLKIMNEHHLKMYD 178 Query: 185 AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEG-LDLYLAPDSEILETVS 243 + G+ LV + + + + E + + EG + ++ + +E V Sbjct: 179 DKKKTGYRTLVMKEFDSKIQIIFVTGKENLSEEFIHDVTQLEGVVSIWQSVKTETKREVF 238 Query: 244 GEMPWY--------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 G+M + ++L+ PR F Q+N + + +W+ ++ + Sbjct: 239 GDMRFIWGEEKMHLQLEDIQLSLLPRSFFQLNTKQSVNLYNVVKDWMPRSKTT--VEAYS 296 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G+G +L + +A ++GVE + V+ +NA LN NV+F E+ + K+ Sbjct: 297 GIGAISLFVKDKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHLVQEKD 356 Query: 356 GFDKVLLDPARAGAAGVMQQ-IIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 D +++DP R+G M++ I+K + ++YVSCNPATLA+D L K Y I ++ + Sbjct: 357 -VDTLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDLGVLKKE-YRIVKIQPV 414 Query: 415 DMFPHTGHLESMVLFSR 431 DMF T H+ES+ L R Sbjct: 415 DMFSQTPHVESVTLLVR 431 >UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzyme n=4 Tax=Leuconostocaceae RepID=Q03Z05_LEUMM Length = 463 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 109/452 (24%), Positives = 190/452 (42%), Gaps = 32/452 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGK-TLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 Q + V V+D+ G G+ K L++ LP E + VT+ K AKV+ Sbjct: 13 PVKLNQELIVVVDDIRIDGMGIVYVTAKYPLYVADALPGEKVHLLVTQVDKFSGYAKVLD 72 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV------IAD 122 L S +R+ + G + + Q K A + RL + +V D Sbjct: 73 WLESSDKRQNSDRQYLIDAGTAPLVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMD 132 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P YR + + + + + L GF K G+ D+V + + +++ + VR L Sbjct: 133 NPTYYRNKTIVPVKW--QNDHLTSGFYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEK 190 Query: 183 LQAMR-----HLGHVELVQATSG-----TLMILRHTAPLSSADREKLE----RFSHSEGL 228 G + + G +++L + S + E + + + + L Sbjct: 191 YDITAFDPDLERGAIRYIMIRRGYYSHELMVVLVSNEEVISHETEIIADIRNQLTELKSL 250 Query: 229 DLYLAPDSEIL------ETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEW 281 L +P + + + GE YD+ G P F QVN + + A + Sbjct: 251 ILNYSPKKDYVLLSPNNRILWGEKAIYDTLLGYEFIIGPNSFYQVNPQTTEVLYDLAAQK 310 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 D++P D V+D + G+G + +A++ V+GVE VP V Q N ++N + N + Sbjct: 311 ADLKPTDTVIDAYSGIGTIGISVASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILA 370 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + K D V +DP R G ++ + P +IVY+SCNP TL+RD+ Sbjct: 371 DAPVQFKKWQEQGLKPDVVFVDPPRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVE 430 Query: 401 LLKAGYTIA-RLAMLDMFPHTGHLESMVLFSR 431 +++ GY I + +D FP T H+ES+ +F + Sbjct: 431 IIENGYHIDGSVLPVDQFPQTSHVESITVFRK 462 >UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopobium RepID=C8WAE3_ATOPD Length = 441 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 133/447 (29%), Positives = 201/447 (44%), Gaps = 38/447 (8%) Query: 16 IITVSVNDLDSFGQGVARH-NGKTLFIPG-LLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 +T+ V + +A GKT+FI G +P + V VTE+ +++R ++V+ L S Sbjct: 3 ELTLHVERMSYGPDAIAHTSEGKTVFISGGAVPGDTVSVQVTENSDRFSRGQLVKVLEAS 62 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKH---DVSEVIADV--- 123 RE P + G + + Q K AL R+ DVSE++ D+ Sbjct: 63 EFREPRPNPFVALTGATPWGNIVYEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSP 122 Query: 124 --PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 PWGYR + L+ + +G DIV +K CP+L + + V L Sbjct: 123 GEPWGYRNKIELAFKR--NGNKTLVGMYAPNGQDIVRIKDCPLLDKSNQKAVGAVSGALS 180 Query: 182 SLQAMRHLGHVEL---VQATSGTLMILRHTAPLSSADREKLERF------SHSEGLDLYL 232 L L + V + L + TAP S R ++ R + S + Sbjct: 181 YLSGSHELDVERIGIRVSRRTKELEVALWTAP-SGFPRAQVARVLSDAVKATSVVRVMTK 239 Query: 233 APDSEI----LETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 P +E +SG W + +G ++ S F QVN +K+V L LDVQP+ Sbjct: 240 GPSKARRVVGVERLSGSGSWSELIDGQKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPD 299 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 D +DL+CG G FTLPLA +A V VE V ++N L L NV + + Sbjct: 300 DEAMDLYCGAGTFTLPLAKRAGFVSAVEAYGPAVRDLRRNLELAKLDNVDAVGGDAGREF 359 Query: 348 TKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG- 405 D +++DP RAG A V+QQ+ K I YVSC+PATLARD + ++ G Sbjct: 360 PDTDA-----DVIIVDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGS 414 Query: 406 YTIARLAMLDMFPHTGHLESMVLFSRV 432 Y + +D+FP T H+E++ L R+ Sbjct: 415 YKPVSVTPVDLFPQTFHVENVCLLKRI 441 >UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S2X4_FINM2 Length = 442 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 114/444 (25%), Positives = 178/444 (40%), Gaps = 30/444 (6%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 ++I+ V +G+ + + I + + KK + K+V +L S Sbjct: 2 KKILEAKVEYNVFPNKGICKIDDNLYSIKNTIQGQTISFQRKRKKKGFIEGKLVEKLEKS 61 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--HDVSEVIADVP--WGYRR 129 P CP CGGC Q D++ K L L K +D + P GYR Sbjct: 62 PLETIEGCPVNERCGGCIYQKLEYDVECDLKKKTLTELYKDIYDEDIIFHPSPILQGYRN 121 Query: 130 RARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLGS-----L 183 + + K L +G +I D C I+ + V+ Sbjct: 122 KMEYTFGDSVKGGPLVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFF 181 Query: 184 QAMRHLG---HVELVQATSGTLMILRHTAPLSSADREKLERFS-----------HSEGLD 229 + ++H G H + ++ S ++ D F+ H+ + Sbjct: 182 KKIKHTGLLRHFIIRKSFSDDEYMINLVTTSDKFDVNDFVEFAKQIDNRIVSIYHTINDN 241 Query: 230 LYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + A + LE + G+ + NGL SP F Q N +++ RALE Sbjct: 242 ISDAVIVDKLELLHGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGK 301 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 V DL+CG G A ++ SV+GVE V VEK ++NA LNGL N F ++ + Sbjct: 302 NVYDLYCGTGTIAQIFAKKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFME 361 Query: 349 KQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 K D V+LDP R G + ++I + P + +Y+SCNP T D + ++ GY Sbjct: 362 KV----EKKDVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYE 417 Query: 408 IARLAMLDMFPHTGHLESMVLFSR 431 I L D FP T H E++VL SR Sbjct: 418 IKSLEFFDQFPRTYHCEAVVLLSR 441 >UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusobacteriaceae RepID=C7NBA6_LEPBD Length = 474 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 105/471 (22%), Positives = 200/471 (42%), Gaps = 47/471 (9%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 K Q + + + + G+G+ R +G +F+P +P + EV + KK YAR Sbjct: 3 KIKNNYEVGQKLEIEIEKIVFGGEGLGRVDGFAVFVPMSVPGDKLEVKIISVKKSYARGL 62 Query: 66 VVRRLSDSPERETP-RCPHFGVCGGCQQQHASVDLQQRSKSAALARLM---------KHD 115 + R + S +R F GC + Q K L ++ K Sbjct: 63 ITRIIEPSKDRIEDLSKISFEDFDGCDFGMLKYEKQLEYKDKMLEEVLTKIAEIDLKKVK 122 Query: 116 VSEVI-ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQ----LE 170 +S++I +D YR + + + K +Q GF S ++ K+ + + ++ Sbjct: 123 ISKIIGSDKKINYRNKT--AEPFFKKNGIIQTGFYSRKSHNVFSAKESLLKSEIAKIIID 180 Query: 171 ALLPKVRACLGSLQAMR---------HLGHVELVQATSGTLMILRHTAPLSSADR--EKL 219 L KV + G+ + + L + + +MI+ S ++ + L Sbjct: 181 KFLQKVNSFAGTKKEFKVFNEVNNTGFLKQIMIRNNEKDEVMIVVVVNKNSQYNQLSKVL 240 Query: 220 ERF--SHSEGLDLYLAPDSEILETVSGE--------MPWYDSNGLRLTFSPRDFIQVNAG 269 E + +Y++ +E + G+ + GL+ P F Q+N Sbjct: 241 EEMYDENDCIKSIYISVKTEQNNVILGKNVHLFGSQYLEEEMEGLKFKIYPNSFFQINKK 300 Query: 270 VNQKMVARALEWLDVQPE-------DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322 K+ A+ +L+ + + V+D F G G + L+ V+G+E + + Sbjct: 301 QALKLYDAAINFLNEENKNIDKIYEKTVIDAFSGTGTIAMMLSKNIKKVIGIESIESSTL 360 Query: 323 KGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEP 381 + + N +QNV F + +E+++ K + ++ DP R G ++ ++K + Sbjct: 361 AAKLTSYENSIQNVEFVNGKVEKELPK-ILKREDVGAIVFDPPRRGIEESALKSVVKNKI 419 Query: 382 IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 +IVY+SCNPAT ARD + L + GY + ++A +DMFP TGH+E + + R+ Sbjct: 420 EKIVYISCNPATFARDVKILAENGYVLRKVAPVDMFPQTGHIEVVGMIQRI 470 >UniRef50_Q1D5V4 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Cystobacterineae RepID=Q1D5V4_MYXXD Length = 431 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 132/435 (30%), Positives = 201/435 (46%), Gaps = 22/435 (5%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 I +++ L G+GVA G+T+FIPG P + V + E + + R + + + Sbjct: 3 PLPELPIELTIERLGQLGEGVASWQGRTVFIPGTFPGDTVRVHL-ETQGRVLRGILRQVV 61 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV----------SEVI 120 S P+R C + CGGC + Q+ +K + ++H ++ Sbjct: 62 SPGPDRRDAPCVYASDCGGCDWLALAEPAQRSAKQEIVLSTLEHLGHLARDSFTVRPLLV 121 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 A WGYRRRA L + +G+ S + V V+ C L P L AL K+ L Sbjct: 122 APRDWGYRRRAVLHPA-----GKGALGYFGRRSHERVPVEVCGALTPVLTALPGKLAPLL 176 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 L V L+ + + P+++ E E + L+ + E Sbjct: 177 KPLAKDAE--EVLLLAEGDKAAFAVNLSGPVTARHLEAAEAAVRALRLEGAVLTPKEGSA 234 Query: 241 TVSGEMPWYDSNGLR----LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + G+ + LR L P F Q +A N +V A+ L + D VL+L+ G Sbjct: 235 RLLGKPALRSYSPLRPEVPLYLRPDAFAQAHAEANVGLVTSAVYELGARESDTVLELYSG 294 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 GNFT PLA AASV+GVE P VE Q++A G+ NV F + + + Sbjct: 295 NGNFTFPLAGTAASVLGVESSPVGVELAQRSAHEGGVTNVRFIQGDARKVCDGLVAEQRR 354 Query: 357 FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 FD L DP RAGA G+ + + L R+VYV+C+PA+LARD+ L+ AGY L ++DM Sbjct: 355 FDVCLADPPRAGAPGLAKWMTALGVRRVVYVACDPASLARDAAGLVAAGYKPLALQVVDM 414 Query: 417 FPHTGHLESMVLFSR 431 FP T H+E+++ F R Sbjct: 415 FPQTHHVEAVMSFER 429 >UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBR4_9CHLA Length = 484 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 115/475 (24%), Positives = 191/475 (40%), Gaps = 59/475 (12%) Query: 15 QIITVSVNDLDS--FGQGVARHNGKT---LFIPGLLPQENAEVTVTEDKK-QYARAKVVR 68 Q + + + D G+GV + KT + +P +P + + +V K+ + + K+ Sbjct: 8 QPVELDIVDFSKKGNGKGVLKREDKTDLSIEVPFSIPGDRVKASVLFKKRMKKQQGKLEE 67 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM------KHDVSEVIA- 121 + +P R + +C HF CGGC+ Q Q R K + L +I Sbjct: 68 VIKAAPVRISAKCAHFATCGGCRWQQMGYAEQLRLKEEKIRALFSAILTPDVQFFPIIPC 127 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRAC- 179 D PW YR + S + + +G S + ++ +C + L R Sbjct: 128 DDPWQYRNKMEFSFSTDLSQNKY-LGLIMDSSRGKVFNLTECHLTNSWFVDALKVTRNWW 186 Query: 180 ----LGSLQAMRHLGHVELVQ----ATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L + R+ G + + +G M++ + K + + GL Sbjct: 187 ESSKLDAYHHYRNTGSLRTLTLREGQRTGDRMVILTVSGNPDYALHKNDLDAFVAGLRAS 246 Query: 232 LAPDS---------EILETVSG------EMPWYDSNGLR-----------------LTFS 259 + D I + G EM Y + +R S Sbjct: 247 IELDRPECRLSIFLRIHQIAKGMASQFYEMVLYGPDQIREKLYIQSQSEEQPVPLEFNIS 306 Query: 260 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 P F Q N +++ + AL+ + V DL+CG G ++ L+ A +VVGVE P Sbjct: 307 PSAFFQPNTRQAERLYSLALQLSSISTPITVYDLYCGTGTLSICLSKFAKTVVGVEICPE 366 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK--NGFDKVLLDPARAGAAG-VMQQI 376 V + NA NG NV F + E +TK D V++DP RAG +Q + Sbjct: 367 AVLDARSNAAKNGCSNVHFLCGAVHEQLTKIIEENLFPLPDLVVVDPPRAGLDPHALQHL 426 Query: 377 IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 IKL P +I+YVSCNP T + L+ GY + + +D FPHT H+E++ + ++ Sbjct: 427 IKLSPKKILYVSCNPLTQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481 >UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GDX8_PHATR Length = 378 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 113/405 (27%), Positives = 178/405 (43%), Gaps = 46/405 (11%) Query: 38 TLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASV 97 + +P ++P E V V + Y+ A +V L SP+R P CP CGGCQ QH S+ Sbjct: 3 VVMVPNVIPGERVRVAVFRNFNNYSEADLVTVLEPSPDRVVPHCPLAADCGGCQLQHVSI 62 Query: 98 DLQQRSKSAALAR-LMKHDVSEVIADVPWG----YRRRARLSLNYLPKTQQLQMGFRKAG 152 + Q+R K+ + L ++ +++V G Y R++L+ +Y +Q +GF+K Sbjct: 63 ESQRRWKTTLVQEGLAQYGLTDVTVAPTLGTDQTYGYRSKLTPHYDAPAKQP-IGFQKMT 121 Query: 153 SSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLS 212 S I++V+ CPI P + A + R L S + R G ++ R Sbjct: 122 SRKIINVETCPIATPAINAKYQQTRQELMSQPSKRK----------KGATLLFRQG---- 167 Query: 213 SADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQ 272 D + +ET + GL T+ +F Q N V Sbjct: 168 --------------------NADDDYVETNHQQPLTTTVRGLNFTYLAGNFFQNNYYVLP 207 Query: 273 KMVARALEWLDVQPED-----RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQN 327 MV L + + D +CG G F + A A+VVG+E V + Q N Sbjct: 208 LMVEHVLARAVGDDHEQPTMTHLADCYCGSGLFAIAAAPSFATVVGIEINDKAVREAQAN 267 Query: 328 ARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVY 386 A NG+ + F + E + V+LDP R G + + Q+ P RIVY Sbjct: 268 AERNGIDHCQFLAASSENIFAEIRDFPRDTTVVVLDPPRKGCSVEFLSQLYDFAPRRIVY 327 Query: 387 VSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +SC+P T ARD++ ++ AGY I + D+FP T H+E +++ R Sbjct: 328 MSCDPTTQARDAQGIVAAGYRITSVQPFDLFPQTRHIECLMVLER 372 >UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ40_9FIRM Length = 450 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 104/450 (23%), Positives = 189/450 (42%), Gaps = 32/450 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 ++ + + ++ K + G + + V V ++++ AK++ L Sbjct: 3 RRKKKYLEGIIEKVNFPNMSEFTFEDKKVNFKGGIEGQKVSVVVGRKREKHMEAKLLEIL 62 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---DVSEVI-ADVPWG 126 SP P CP++ CGGC Q + + + K + L + + E+ + + Sbjct: 63 EKSPLETNPTCPNYIECGGCSYQSVPYEYELKLKQRQIKELFEDVYSEEPEIFESPLKTA 122 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQL----EALLPKVRAC-L 180 YR + + + K + +G K +++D K+C ++ A++ VR L Sbjct: 123 YRNKMEYTFADMYKDSPIMLGMHKKNRFYEVIDTKECNLVHIDFEIIRNAVIDFVREKNL 182 Query: 181 GSLQAMRHLGHVELV----QATSGTLMILRHTAPLSSAD-------------REKLERFS 223 ++ H G + + T+G +M+ T S D ++ Sbjct: 183 PFVKKRTHEGLLRHLIIRYALTTGEIMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIV 242 Query: 224 HSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 H+E L A E + + G+ + L +P F Q N + ++A+E Sbjct: 243 HTENDSLADAVVPEKINIIFGKEYITEKIFDLEFKVTPFSFFQPNVFGAINLYSKAIELC 302 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 V DL+ G G +A +A +V G+E V VE ++A+ NGL N TF + Sbjct: 303 GDIENKVVFDLYSGTGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGD 362 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 + E++ + K D +++DP R G +++II IVY+SCNP T RD + L Sbjct: 363 VLEEIENR---KEMVDVIIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQIL 419 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+ GY + L + + FP T H E++ L R Sbjct: 420 LQNGYKLITLKIFNQFPRTVHCEAVALLER 449 >UniRef50_UPI0000E0E6C1 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E6C1 Length = 484 Score = 331 bits (848), Expect = 4e-89, Method: Composition-based stats. Identities = 134/487 (27%), Positives = 226/487 (46%), Gaps = 59/487 (12%) Query: 1 MAQFYSAKRRTTTR-----QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVT 55 MAQF+ + + +++ ++T+ ++ GQG+ + + + + G LP E V +T Sbjct: 1 MAQFFKPQHKASSKAKRQLPVVTLEISGFTLNGQGICKSHSPVVIVSGALPGETVIVQIT 60 Query: 56 EDKKQYARAKVVRRLSDSPERETPRCPHF----------------GVCGGCQQQHASVDL 99 KKQ V+ ++ +R CP CGGCQ Sbjct: 61 AQKKQVWLGSVISVITSHAQRIAAPCPFAVGAQRDNKVLPTQLAMPTCGGCQLSFVEPSA 120 Query: 100 QQRSKSAALARLMKHDVSEVIADVPW--------GYRRRARLSLNYLPKTQQLQMGFRKA 151 K AL + + + ++PW YRR+ARL+++ K Q +++GFR+ Sbjct: 121 LLALKQTALDEYVHQHIGAI--ELPWRAPVLSAPQYRRKARLAIDARDK-QAIKVGFRQT 177 Query: 152 GSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPL 211 + ++ + QC +L L+ +L + + H+GH+ L+++ ++ PL Sbjct: 178 SAKTVMSIPQCEVLEGALQPVLNAIHTSSAQWHWLIHVGHITLLESRDQIVVAFNTQQPL 237 Query: 212 SSADREKLERFSHSE-------------------------GLDLYLAPDSEILET--VSG 244 S L+ FS + L L+ A D++ + Sbjct: 238 SKQALAALQAFSQAHEVLIAVTVKGVPKGVPSLPHNDDAKWLTLHWADDNDAMNVSLAQP 297 Query: 245 EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 ++ + + DFIQVNA +NQ M+ +++ L + P+DRV+DLFCG GNF++P+ Sbjct: 298 DLWLTSIDECQYPVGLDDFIQVNASLNQAMIYTSIDLLALAPDDRVVDLFCGSGNFSVPI 357 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A Q V+G+EGV A+V++ Q A +G+ NVTF H +L +K+LLDP Sbjct: 358 AKQTEYVLGIEGVEAMVQQANQGAVASGVDNVTFLHADLTTSEAMHAIKAAKCNKLLLDP 417 Query: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 +R GA ++ Q+ + RIVYVSCNP + D + LL AG+ DMF T H E Sbjct: 418 SREGAKAILAQVDLQQFERIVYVSCNPQSWVHDIQLLLDAGFACQHTQFFDMFAGTTHTE 477 Query: 425 SMVLFSR 431 + +F+R Sbjct: 478 LVSVFTR 484 >UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y1544_PARUW Length = 442 Score = 331 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 97/439 (22%), Positives = 181/439 (41%), Gaps = 50/439 (11%) Query: 41 IPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQ 100 +P +P + + + K +++ + S R C HFG CGGC Q +LQ Sbjct: 3 VPFTIPGDQVNAILYKKTKDKYLSRLSKVTMPSNNRIDALCMHFGSCGGCCWQQLPYELQ 62 Query: 101 QRSKSAALARLMKHDVSE------VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS 154 + K ++ L K ++E +I PW YR + L+ + K + +G G+ Sbjct: 63 LKQKEKSIQNLFKPYLNENVKWHSIIPSSPWHYRNKMELTFS-SDKAGRRYLGLIMQGTR 121 Query: 155 -DIVDVKQCPILAPQLEALLPKVRAC-----LGSLQAMRHLGHVELVQATSGT------- 201 + +K+C + ++ + + A++ G + + G Sbjct: 122 GHVFQMKECLLANGWFAQAARAIQKWWDNSDVQAYHAIKDRGSLRTLTLREGLRTGDRLV 181 Query: 202 --------------------LMILRHTAPLSSADRE-----KLERFSHSEGLDLY---LA 233 + +LR + LS++D++ ++++ + + Y L Sbjct: 182 MLTVSGNPDYALTKSQLQSFVQVLRDSIELSNSDQKLSVFLRIQQIAKGRPTNFYEMLLY 241 Query: 234 PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 I E + L SP F Q N +K+ ++AL+ D+ V DL Sbjct: 242 GPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQALKLADLSASHVVYDL 301 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 +CG G + A V+G+E V ++N + NGL NVT ++ + + Sbjct: 302 YCGTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVTIKSGDVGQVLEALSQE 361 Query: 354 KN-GFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 + D V++DP R G A ++ I+ L+ ++VY+SCNP T + L+ GY + + Sbjct: 362 NSLKPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYISCNPKTQVMNLGPLIDGGYQLQIV 421 Query: 412 AMLDMFPHTGHLESMVLFS 430 +D FP T H+E++ L + Sbjct: 422 QPVDQFPQTVHVENITLLT 440 >UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IVF7_ACIBL Length = 441 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 125/452 (27%), Positives = 202/452 (44%), Gaps = 47/452 (10%) Query: 16 IITVSVNDLDSFGQGVARHNG------KTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 ++ + + L G G+AR + K +F+P + P E E + E K +ARA+ + Sbjct: 1 MVELKIEKLIYGGDGLARMHDAKLGRSKAVFLPFVAPGETVEAIIREQKPGFARAQAEKV 60 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSEVI---AD 122 L S R+TP CP+F CGGCQ QH Q ++K+ L R K + + I A Sbjct: 61 LQPSEFRQTPPCPYFFKCGGCQYQHLQYAEQVKAKAQILEETLSRTAKLKLEQPIQTHAA 120 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P GYR R R+ ++++P Q +G+ + GS ++ V+QCPI +P + +L + A Sbjct: 121 EPLGYRNRTRMRVSHVP---QFAIGYYRFGSHSLLPVEQCPISSPLINRVLQGLWAAGRE 177 Query: 183 LQAMRHLGHVELVQATSGTLMILR----------HTAPLSSADREKLERFSHSEGLDLYL 232 + R + V+ + ++L P+ R K+ + Sbjct: 178 ERIAREVREVQFFANHDDSRLLLELYIDHHAEPDALQPMIETLRGKMPEIAGVAVFRGAP 237 Query: 233 APDSE-----ILETVSGEMPWYDSNGLR-------LTFSPRDFIQVNAGVNQKMVARALE 280 A DSE + + ++ LR S F Q N + +M Sbjct: 238 ADDSEDQRAPLTRAKASPGVFFGERSLRYKTKRHEYQVSAGAFFQTNRFLLDEMAETVTR 297 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 LDL+ G G F+LPLA Q V+ VE + NA L+NV Sbjct: 298 ---GHSGKLALDLYSGGGFFSLPLADQFEKVIAVEASGHSQADLKTNA----LRNVKAVR 350 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSE 399 EE + + + D V++DP RAG +I ++ R+ YVSC+PATL+RD + Sbjct: 351 SGTEEFL-RGEGRQLRPDLVVVDPPRAGLGEKTSHLIGRMSVGRVTYVSCDPATLSRDMK 409 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+++G+ + + + D+FP T HLES++ R Sbjct: 410 VLVESGFRVEEVHLFDLFPQTYHLESVLHLVR 441 >UniRef50_B8C918 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C918_THAPS Length = 387 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 105/414 (25%), Positives = 176/414 (42%), Gaps = 51/414 (12%) Query: 38 TLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASV 97 +FIP ++P E V + + Y+ A ++ + SP+R P C +CGGCQ QH ++ Sbjct: 3 VIFIPNVIPGEVCRVRIYRNHASYSDADLLEIVQPSPDRIEPLCSLANICGGCQYQHINI 62 Query: 98 DLQQRSKSAALARLMKHDVSEVIADVP-----------WGYRRRARLSLNYLPKT--QQL 144 Q++ K+ + L + D P +GYR + + + + Sbjct: 63 GRQRQMKTEQVQELFERIGGLKAEDFPTVLDTLGTEEVFGYRSKITPHYDVITNKSCEIG 122 Query: 145 QMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMI 204 +GF++ S +VDV C I P + L KVR L + G ++ Sbjct: 123 PIGFKEKASRRLVDVPYCHIATPDINTALSKVREETRDKAVQGKLK-----KPAKGATLL 177 Query: 205 LRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFI 264 LR ++ET L F +F Sbjct: 178 LRDAG--------------------------DGLVETNHVAYVNTTVKDLTFRFQAGNFF 211 Query: 265 QVNAGVNQKMVARALEWLDVQPE-----DRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Q N + KMV ++ ++ ++D +CG G F L ++ VG+E Sbjct: 212 QNNPFMLPKMVDLVVDAATIKSSSGEAMTHLIDCYCGSGLFALGCSSSFDVCVGIEVNDK 271 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEE-DVTKQPWAKNGFDKVLLDPARAGA-AGVMQQII 377 V++ + NA LNG++N F + E ++K P V++DP R G ++Q+ Sbjct: 272 AVQEARANAELNGIKNCDFVSASAEAIFLSKDPVKGKESTVVVVDPPRKGCSEEFLEQLD 331 Query: 378 KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + +P R+VY+SC+PAT ARD++ L+ GY I + D+FP T H+E + +F R Sbjct: 332 EYKPQRVVYMSCDPATQARDAKFLVAHGYDIVSVQPFDLFPQTRHIECLAIFER 385 >UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E3 Length = 454 Score = 330 bits (846), Expect = 8e-89, Method: Composition-based stats. Identities = 110/447 (24%), Positives = 190/447 (42%), Gaps = 28/447 (6%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKT-LFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 I ++ ++ +GV + ++P + EV + + +K A++ R + Sbjct: 3 KKNDIAVGVISKINVKNKGVIYLDDAAKAYVPDAYEGQEVEVRLLKKRKGNWEARLERVI 62 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPW-GYRR 129 + +C FG CGGC Q+ + Q K + +++ +V+E++ W YR Sbjct: 63 KNPSYYIAAKCKFFGACGGCALQNLPYEKQLERKLRWVNQILNFEVAEILGSPKWFQYRN 122 Query: 130 RARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLG-----SL 183 + + K L +G K + DIV V C I+ A+L Sbjct: 123 KMEYTFGDTVKDGPLALGLHKKRTTFDIVTVDDCKIVDDGFNAILRATLXFFAVXNXPYY 182 Query: 184 QAMRHLGHVEL----VQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL------- 232 + + H G ++ T+G ++ T+ + D + G + Sbjct: 183 KKVSHQGFLKFLVVRRSETTGXFLVNIVTSSQIAYDFTAFVEAIKNTGFKIAGVLHTISD 242 Query: 233 ----APDSEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 A + +E + G Y+ GL+ SP F Q N + + A AL L + Sbjct: 243 SPSDAIKPDSVELLYGLNYIYEEILGLKFKISPFSFFQTNTKGAEVLYANALALLSDLED 302 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 V DL+ G G +A +A VVG+E V V ++NA+LNGL+N F ++ + Sbjct: 303 KTVFDLYSGTGTIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENCEFIAGDV---L 359 Query: 348 TKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGY 406 T+ A G D +++DP R G +++II I+Y+SC +LARD A + GY Sbjct: 360 TQIDNADVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLARDLVAFAEGGY 419 Query: 407 TIARLAMLDMFPHTGHLESMVLFSRVK 433 +A+ +DMF T H+E++VL R Sbjct: 420 HVAQSLCVDMFAQTYHVETVVLLKRTN 446 >UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaerococcus RepID=C7RGV6_ANAPD Length = 415 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 107/417 (25%), Positives = 204/417 (48%), Gaps = 26/417 (6%) Query: 27 FGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGV 86 G+GV + + K FI G E+ ++ + ++KK + A+ V+ S SP P CP++ Sbjct: 14 DGRGVGKKDSKVYFIEGATFGESCDIEIIKEKKNFIEARKVKTTSQSPYYTQPPCPYYYE 73 Query: 87 CGGCQQQHASVDLQQRSKSAALARLMK------HDVSEVIADVPWGYRRRARLSLNYLPK 140 CGGC + D Q + K + + +K D E+I YR + RL + Sbjct: 74 CGGCTIMDINYDEQIKLKKNLITKAIKKTCAIEIDDLEIITSETLSYRNKIRLQV----- 128 Query: 141 TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHV-ELVQATS 199 ++ ++ + K S+D+V++K C + + L K++ + + ++ LG++ + S Sbjct: 129 DKKGRLSYNKKSSNDLVEIKDCLLANEHIIENLGKIQNLVTT--IVKDLGNIIREISIRS 186 Query: 200 GTLMILRHTAPLSSADREKLERFSHSEGLDL---YLAPDSEILETVSGEMPWYDSNGLRL 256 + IL + + S + EKL ++ DL + + ++T+ + + Sbjct: 187 NSCEILLN---IYSKEEEKLYKYLKENHKDLPYNINIINKKKIKTLGKDHLIFKVKDKSF 243 Query: 257 TFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEG 316 S DF QVN + + A ++L+ ++LDLFCG G ++ L ++VG+E Sbjct: 244 KVSKDDFYQVNDYQIENLYQNARKYLE--KNKKLLDLFCGSGISSIAL--NDDNIVGIEI 299 Query: 317 VPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQ 375 + ++ ++NA++N L + F +N + ++ K V +DP RAG +++ Sbjct: 300 NKSAIKDAKENAKINNLTDYKFIDKNA-NYIDQKFIEKEKIQTVTVDPPRAGLDKEIIKT 358 Query: 376 IIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + K + I+Y+SCNP TLARD + + GY + + +DMFP T H+E++ L ++ Sbjct: 359 LAKTKIKNIIYISCNPQTLARDIKRFMDRGYELKEIKAVDMFPQTMHVEAIALIQKM 415 >UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinella chromatophora RepID=B1X3H7_PAUCH Length = 448 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 204/447 (45%), Gaps = 32/447 (7%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 + + +SV DL G GVAR +F+ GLLP E + +T ++ ++ + Sbjct: 4 RVGECLKISVFDLTIQGIGVARWQEHVIFVAGLLPGEIGFIQITHINQKVGIGVIINKNV 63 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDV---SEVIADVP 124 S ER P C CGGC Q + Q K L RL +V +I + P Sbjct: 64 FSKERTQPICMLAKDCGGCSLQSINEQAQVAWKQHYVSETLNRLSGIEVKVLPLLITNEP 123 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG--- 181 YR +A + L + L+ GF + S IV++ CP+L P+++ L+ ++A L Sbjct: 124 IKYRNKALIPLEQT-SSGWLRAGFYRRASHQIVNMDNCPLLDPRIDTLVEPIKADLETSH 182 Query: 182 ---SLQAMRHLGHVELVQA--TSGTLMILRHTAP----LSSADREKLERFSHSEGLDLYL 232 + ++ + H+ L T+ ++ L + +S + ++R+ G+ L L Sbjct: 183 WPIDIHSLNGIRHLCLKVGILTNEIIITLVSSHDRMPGISKLAQHWMQRWPQVVGVCLNL 242 Query: 233 APD------SEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 P+ +T++G + L L + F Q+N ++ V L+V Sbjct: 243 QPNLDNVAIGSSTKTIAGRPWLIERFCNLNLRIASDTFFQINTLQAERAVNFLASILNVS 302 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 ++LD + G+G +LPLA A+V+G+E + V + NA+LN + + F H ++ E Sbjct: 303 TGPKILDAYSGVGTLSLPLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAE 362 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEAL-LK 403 + D +++DP R G V++QII + VY+SCNP+TLARD L L Sbjct: 363 ALALHL---PSSDALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTLA 419 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFS 430 + + +D FP T H+E + + Sbjct: 420 GNIKVTFIQPIDFFPKTTHVECLTILE 446 >UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4RQV8_OSTLU Length = 536 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 130/485 (26%), Positives = 197/485 (40%), Gaps = 65/485 (13%) Query: 11 TTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 ++V D + G+GV + NG L G P E VT+ +K+ A Sbjct: 51 VRVGDEVSVECVDFATSGEGVCKLANGMVLLCDGATPGEVVRARVTKLRKKLAHGAKTAT 110 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSE------- 118 +P T CPH CGGC QH + D Q K LAR+ K Sbjct: 111 ERAAPNAVTAPCPHHEQCGGCAWQHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGAC 170 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSD-IVDVKQ-CPILAPQLEALLPKV 176 V AD YR + + + + + +G R G++D +VD+ C + + + + +L + Sbjct: 171 VGADETSRYRNKMEFAFASGTRGKTV-VGLRPRGANDSVVDLSGGCLLQSEEADRVLAAI 229 Query: 177 RACLGSLQAMRH----------LGHVELVQA---TSGTLMILRHTAPLSSADREK----- 218 R L L V + A G ++ A +S + K Sbjct: 230 RETLERADGRLEAFDRTSGEGTLRSVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLA 289 Query: 219 -----------LERFSHSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQV 266 + H+ G A ++ +E V GE ++ NG+ S F Q Sbjct: 290 GLIDVVSKVPGVVSVVHTSGGTTTKAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQT 349 Query: 267 NAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 N ++V + E + + VLDLFCG+G L +A+ + V+G E VP V+ Sbjct: 350 NTEQAARLVRQVREACAFSGDKSEIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDA 409 Query: 325 QQNARLNGLQNVTFYHENLEE--------DVTKQPWAKN--GFDKVLLDPARAGAAGVMQ 374 ++NA LN + N FY +L + P K D V+ DPAR G + Sbjct: 410 KRNAELNNITNAKFYRVDLARLNPSKGPKGLLTTPKGKELPMPDIVITDPARPGMDSALI 469 Query: 375 QIIK-LEPIRIVYVSCNPATLARDSEALLKA-------GYTIARLAMLDMFPHTGHLESM 426 I++ + RIVYVSCNPAT ARD L Y + + +DMFPHT H+ES+ Sbjct: 470 AILRTIGARRIVYVSCNPATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESV 529 Query: 427 VLFSR 431 + R Sbjct: 530 AVLER 534 >UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzyme n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNA0_MYCA5 Length = 449 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 104/444 (23%), Positives = 185/444 (41%), Gaps = 26/444 (5%) Query: 12 TTRQIITV-SVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 QI+ + G GV R NG +F+ LL E A++ + + ++A A++ + Sbjct: 5 KINQILKAQKATEFSYEGYGVIRENGYPIFVKNLLIGEVADIQIIKVTAKFAIAEIFNLI 64 Query: 71 SDSPERETPRC-PHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS----EVIADVPW 125 SP+R + F C S + Q K + L +++ + I P Sbjct: 65 ETSPKRIPIKNYELFRSCA-APLMILSYEDQLAFKQKIVNDLFLRELNFRNVKEITPSPL 123 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 R +L ++ + +MGF S +V+ + ++ +L ++ L + Sbjct: 124 EINYRNKLRVHVECQGTTFKMGFYVKNSHILVEQTSYDLAYKEIGNILEEI-DFLCKKEV 182 Query: 186 MRHLGHVELVQATS---------GTLMILRHTAPLS----SADREKLERFSHSEGLDLYL 232 + ++ + TS G ++ + + S + +E+F + + + Sbjct: 183 LLEDNFIKKNKITSITVKYSEKTGESQVIFESLKQAPFPASFIKRLIEKFDNLNIVQIVC 242 Query: 233 APDSEILETV----SGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + + + E Y + L+ S + F QVN KM L+ L++ + Sbjct: 243 NEEKTKILKLIVLAGKESIEYKIDKLKFNVSSQSFYQVNEKQTNKMYKTLLKSLNLTGSE 302 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 ++D F G+G + LA +A VV VE G++NA+LN L N+ F E+ Sbjct: 303 FIVDAFAGVGTIGMYLAKKAKQVVCVEISKKATLNGKENAKLNSLNNLEFISEDCNRFFD 362 Query: 349 KQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 K+ + D ++ DP R G + II RI Y+SCNP TL RD + GY Sbjct: 363 KECTRRQNIDVIVFDPPREGLNKTTINAIIPKSLKRIAYISCNPRTLVRDLKLFTSKGYK 422 Query: 408 IARLAMLDMFPHTGHLESMVLFSR 431 I + DMFP T H+E++ L S+ Sbjct: 423 IEFVQPFDMFPQTYHVETLALLSK 446 >UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UYU1_9AQUI Length = 408 Score = 327 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 112/425 (26%), Positives = 199/425 (46%), Gaps = 26/425 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + VS+ + G+G++R K F+P LP+E EV + E+KK V L +P R Sbjct: 1 MKVSIEKVVFGGKGLSRLKEKVCFVPFTLPEEVVEVEIKEEKKSICEGFPVDVLEKNPYR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIADV-PWGYRR 129 P+C ++ CGGC QH + + Q K L ++ D +VI P+ YR Sbjct: 61 VEPKCKYYMQCGGCDFQHINYEKQVEIKKEILEETLQRIGKINKDTDKVIPSANPFNYRN 120 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R + GF K S+++VD++ C I + L+P ++ + + L Sbjct: 121 RVQFKF------DGKNFGFYKLKSNEVVDIESCDIADKNINNLIPTLKNLAKNNPQVEEL 174 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY 249 + ++ + L L+ F+ G+ +Y+ LE S +Y Sbjct: 175 HIFHH--PDNKPMLKIVLKENLFMNIENLLDTFA---GIGVYIGNKRVKLEGKS--FTFY 227 Query: 250 DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 + S F QVN + +V + + + + D++CG+G FTLP + +A Sbjct: 228 RAGKFNYRVSIDSFFQVNKYQLENIVDEVISEI-PKDSQCIGDIYCGVGLFTLPASKKAK 286 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 V G+E + V+ Q N +++ + N FY + +E+ + D ++ DP R G Sbjct: 287 KVFGIEASKSAVKDAQYNVKVHNIGNAKFYQKVVEK--SADIIFGYNPDTLIFDPPRTGI 344 Query: 370 AG-VMQQIIKLEP-IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 ++Q++++L+ RI+YVSCNP+T +RD LL + + ++ ++DMFP T H+ES+ Sbjct: 345 PKNIIQKLLQLKSLKRIIYVSCNPSTASRDIN-LLSEKFELKKVKLIDMFPQTHHIESIF 403 Query: 428 LFSRV 432 + +V Sbjct: 404 VLDKV 408 >UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S3A2_FINM2 Length = 403 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 106/424 (25%), Positives = 202/424 (47%), Gaps = 29/424 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + D+ G+ VA++ GKT+F+ G E E ++KK A + + SP + Sbjct: 1 MKLEIIDMIDDGRCVAKYEGKTVFVDGGSIGEIIEAKKIKEKKNLIFATKTKTIQQSPHK 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEV--IADVPWGYRRR 130 + P CPHF C GC Q + + + K L R+ K D+ +V + + + YR + Sbjct: 61 QEPLCPHFYECDGCSMQDITYEKELEIKKNSVLNKLQRIAKLDIKDVDILTNAEYYYRNK 120 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 L + + ++G+ + ++ + C I + + ++ + + + Sbjct: 121 VDLKV------ENGKIGYYNRKTHNLTQISTCKIASTAINEMINWLVN-----HDLNGVS 169 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYD 250 +++ + + I L + LE + + + + ++ + + + + D Sbjct: 170 EIKIRSNYNDEIQI-----SLDYISDQLLENLKTVDSI-VEIYEKNKNFDLIYKKKQFVD 223 Query: 251 SNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 G L SP+ F QVN + A + ++ + DR+LDL+CG+G T+ + Sbjct: 224 KIGDLSFIISPKSFFQVNKYNTSLLYDTAKQMMNAEANDRILDLYCGIGTTTMYIGN--G 281 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 + +GVE V V+ +N +LN L+++ F E E V K + FD +L+DP R G Sbjct: 282 NTIGVEVVKDAVKDANENKKLNNLESIQFIEEKSENVVGKL--TQEHFDVILVDPPRKGM 339 Query: 370 AG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVL 428 V+ IIK ++VY+SC+PATLARD +AL + G+ + + ++DMF T H+E++ L Sbjct: 340 DEKVVDAIIKSTAKKLVYISCDPATLARDLKALTENGFGVEDVKLVDMFAKTMHVETVAL 399 Query: 429 FSRV 432 ++ Sbjct: 400 IQKI 403 >UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepID=C4Z8C9_EUBR3 Length = 418 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 99/405 (24%), Positives = 182/405 (44%), Gaps = 32/405 (7%) Query: 55 TEDKKQYARA----KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALAR 110 T ++K+Y +A ++ S + CP+ CGGC Q Q ++K A + + Sbjct: 13 TRNEKKYKKANGQPRLKE--KSSRAKSDNVCPYAKKCGGCDYQGVEYKEQLKTKQAYMKK 70 Query: 111 LMKHD--VSEVIAD-VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAP 167 L+K V ++ P YR + + + + Q+ G + + D+VD++ C I Sbjct: 71 LLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRR-GQIVAGAYRKNTHDVVDIESCMIEEQ 129 Query: 168 QLEALLPKVRACLGSLQAMRH--------LGHVELVQ--ATSGTLMILRHTAPLSSADRE 217 + + ++ ++ L S + + L HV + + AT +++L +P+ + Sbjct: 130 ESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYATGQIMVVLVLASPILPSKNN 189 Query: 218 KLERF--SHSEGLDLYLAPDSEILETVSGEMPWY---------DSNGLRLTFSPRDFIQV 266 ++ H + L + + V G+ G SP F QV Sbjct: 190 FVKALRKKHPNITTVVLNVNDKKTSMVLGDRNITLYGKGFIEDKLCGCTFRISPGSFYQV 249 Query: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 N + + +A+ + ++R++D +CG G + A A V+GVE + Sbjct: 250 NPVQTELLYEKAIHEAHLTGKERIIDAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVI 309 Query: 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIV 385 NA+ N ++N+ FY+++ + + + D V++DP R G+ + ++KL P R+V Sbjct: 310 NAKRNDIRNIRFYNDDAGKFMVEMAQKGEKADVVIMDPPRTGSDEAFLSSVVKLSPERVV 369 Query: 386 YVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 YVSC P TLARD + L K GYT+ R D FP T H+E++ + Sbjct: 370 YVSCGPETLARDLKYLTKHGYTVKRATPYDCFPFTSHIETVCCLT 414 >UniRef50_Q09833 Uncharacterized RNA methyltransferase C4G8.07c n=2 Tax=Schizosaccharomyces RepID=YAD7_SCHPO Length = 527 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 105/447 (23%), Positives = 185/447 (41%), Gaps = 62/447 (13%) Query: 15 QIITVSVNDLDSFGQGVARH--NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 Q I V ++ L S G G+ + + +P LP + + + YA A + +S Sbjct: 112 QEIEVKISYLSSSGDGIGLVCNDQYAVVVPFTLPGDIVKAKLHFLADTYALADFLEVISP 171 Query: 73 SPERETP--RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---------DVSEVIA 121 S +R+ +CP+F CGGCQ Q S D Q K + + ++ + Sbjct: 172 SEDRDDTLIKCPYFAKCGGCQYQMLSYDKQLLQKKRVVEKAFQYYSKLDSSLLPAIKDTV 231 Query: 122 DVPWGYRRRARLSLNYL----PKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 P Y R +++ ++ L +GF++ G ++D+++CPI + PK+ Sbjct: 232 GSPLQYNYRTKITPHFDVPKGGTKGPLIIGFQEKGRRRVMDIEECPIATKTINEEYPKI- 290 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSE 237 + +Q+ + G +++R + + +G + Sbjct: 291 --IEDVQSRANTF-------KRGATILMRDS--------------ATEDGKHCVITDHKM 327 Query: 238 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL-------DVQPEDRV 290 I+ G+ L TF F Q N + +K + E L + Q Sbjct: 328 IVREQFGD--------LSFTFPAGAFFQNNNSILEKFTSYVREQLLNPFGRKEHQRPKYF 379 Query: 291 LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 +D +CG G F++ + SV+GVE V ++NA+ N + N TF E+ + Sbjct: 380 VDAYCGSGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQAEKIFSSI 439 Query: 351 PWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA----G 405 N +++DP R G + Q+++ P RIVY+SCN T ARD LL Sbjct: 440 ETPPN-ETAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQARDVGFLLSQEKGRS 498 Query: 406 YTIARLAMLDMFPHTGHLESMVLFSRV 432 Y I + D+FP + H+ES++ ++V Sbjct: 499 YKIDEIRGFDLFPQSHHVESILTLTKV 525 >UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavobacteriales RepID=A4C0T4_9FLAO Length = 485 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 117/478 (24%), Positives = 205/478 (42%), Gaps = 59/478 (12%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNG----KTLFIPGLLPQENAEVTVTEDKKQYARAKV 66 Q++ + + D G+G+AR + +F+P LP + + +++ K+YA AK+ Sbjct: 10 VKKNQVLELKIEDYAFGGKGIARIHSEEGSFVIFVPNTLPGQLVKAQISKSSKKYAEAKL 69 Query: 67 VRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSE---- 118 + L S + + G ++LQ + K ++ K + + Sbjct: 70 IDVLEASQDEIQVP---YQDIPGAPYIQLPIELQHKYKKESTLSLFKKIGKVENIDALFD 126 Query: 119 --VIADVPWGYRRRARLSLNYLP-------KTQQLQMGFRKAGSSDIVDV--KQCPILAP 167 V + + YR + + + + +GF++ G + D K + Sbjct: 127 EFVTSPNVFHYRNKMEYGFSAIGYDRITKRDKDEFTLGFKRRGVWWMGDDLNKDSGLFDK 186 Query: 168 QLEALLPKVRAC-----LGSLQAMRHLGHVELVQA-----TSGTLMILRHTAP-LSSADR 216 Q+E L ++ L + G T L L T+P L D Sbjct: 187 QMEDHLKNIKQYCIETGLDPWHGPKREGFFRYFVVRKSFKTDELLCNLVTTSPELEKFDL 246 Query: 217 EKLERFS---------------HSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPR 261 K F + E D +A + + GL S + Sbjct: 247 NKFADFLKDIFGKRLAGLLHTINDETGDRTIATSGSLNLVYGKDKIVEQLLGLDFEISMK 306 Query: 262 DFIQVNAGVNQKMVARALEWLDVQP----EDRVLDLFCGMGNFTLPLATQAA--SVVGVE 315 F Q N +K+ + +E++ V+DLFCG G +A+++ ++GV+ Sbjct: 307 SFFQTNPKCAEKLYNKVVEYVLEDKTKVDNTVVMDLFCGTGTIGQIVASKSKNAQIIGVD 366 Query: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQ 374 V + +E ++NA+ N + V F+ ++ + +T P +N ++LDPARAG A +Q Sbjct: 367 IVASAIEDAEKNAKRNNITGVQFFAADVGKFLTSHPEYENKIKTIILDPARAGIAPKTLQ 426 Query: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 +II L R+VYVSCNPAT ARD+E L AGY I +++++D FPHT H+E++VLF +V Sbjct: 427 KIINLNADRMVYVSCNPATQARDTELLGAAGYVIKKMSLVDQFPHTAHIETVVLFEKV 484 >UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=36 Tax=Lactobacillales RepID=Y3226_LACPL Length = 481 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 110/458 (24%), Positives = 195/458 (42%), Gaps = 35/458 (7%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + Q +++ L G+G+ + F+ G LP+E VT +Y AK Sbjct: 25 KVQATVNIGQRFPLTIRRLGINGEGIGYYKHVITFVKGALPEEVVVAEVTAVHPRYLEAK 84 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---------HDV 116 + SP+R PR + G GG + +H Q K + + ++ +DV Sbjct: 85 IRSIRKPSPDRVDPRDAYAGEVGGFELEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDV 144 Query: 117 SEVIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPK 175 I P+ YR +A+ + + + G K S D+VD+ C + P ++ + Sbjct: 145 RPTIGMTNPYEYRNKAQFQVRLI--DGHVAAGLYKENSHDLVDLPTCSVQMPATMTVMRQ 202 Query: 176 VRACLGSLQAMRHLGH----------VELVQATSGTLMILRHTAPLSSADREKLERFSHS 225 V A L LQ + V AT ++ P + L + + Sbjct: 203 VVAWLEELQVPIYDEEHNSGIVKTIVVREAAATGEIQLVFITNTPKLPKKHQLLMKIAEK 262 Query: 226 E--GLDLYLAPDSEILETVSGEM---------PWYDSNGLRLTFSPRDFIQVNAGVNQKM 274 + + ++ + G+ + +GL S R F Q+N +K+ Sbjct: 263 LPMVVSVMQNINAGKTSLIWGDQTTLLAGKPTITEELDGLVFDLSARAFFQLNPQQTKKL 322 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 A E L++ P + ++D + G+G L LA A V G++ +PA V NA+ N + Sbjct: 323 YRLAREALNLAPNETLVDAYSGVGTIGLSLADVAKEVRGMDTIPAAVADANANAQRNQIT 382 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPAT 393 N + E + + + D +++DP R G V + I++ P ++VY+SCNP+T Sbjct: 383 NAHYEVGEAEVLLPQWLASGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPST 442 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 LA+D +AL + GY + + +DMFP T E++V F++ Sbjct: 443 LAQDLQALTR-GYQVDYIQSIDMFPQTARCEAVVRFTK 479 >UniRef50_A6GQJ2 23S rRNA (Uracil-5-)-methyltransferase (Fragment) n=1 Tax=Limnobacter sp. MED105 RepID=A6GQJ2_9BURK Length = 401 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 133/396 (33%), Positives = 202/396 (51%), Gaps = 14/396 (3%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M + R + V++ +D G+ +GK FI G + E +T K Sbjct: 1 MGRKKKKDRTPVVFPQVQVAIESIDLDANGIGHVDGKVHFIDGAITGETVVAEITRVKPS 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------ 114 Y++ + ++ L+ R TP+CPH+GVCGGC QH + Q K+ AL L++ Sbjct: 61 YSKGRTLQVLNSVSTRTTPKCPHYGVCGGCAMQHIEPNAQVAIKNRALEDLLQRIGRQTP 120 Query: 115 -DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + I WGYR RARLS ++ K + +GF + SS + D++ C +L + ++ Sbjct: 121 EQMMPPIYGSFWGYRHRARLSTRFVIKKDRFFVGFHEKSSSYVADMQVCHVLPKHVSNMI 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 + L +L + +EL T M+LRH PLS +D + L F + G+D +L Sbjct: 181 VPLGNMLVTLSIFMRVPQIELAVGDGVTAMVLRHLEPLSESDLDTLRAFGNEWGVDWWLQ 240 Query: 234 PDSEIL-ETVSGEMPW-----YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 P + + P S G+R+ F P DF QVN +N M++RA+ LD++PE Sbjct: 241 PGGPATAHRLEADKPVDLTYRIPSFGIRMRFRPTDFTQVNHMINDAMISRAVSLLDLKPE 300 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEED 346 DRVLDLFCG+GNF+LPLAT+++ V G EG LV + +NA NGL F+ NL E Sbjct: 301 DRVLDLFCGLGNFSLPLATKSSYVKGFEGSQDLVSRAGENAEFNGLADKTEFHVRNLFEV 360 Query: 347 VTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPI 382 T + + FDK+L+DP R GA + + I+ Sbjct: 361 ETPEWESWGQFDKLLVDPPRDGALEICKAIVGARAE 396 >UniRef50_Q4PA00 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PA00_USTMA Length = 574 Score = 320 bits (821), Expect = 6e-86, Method: Composition-based stats. Identities = 107/470 (22%), Positives = 184/470 (39%), Gaps = 67/470 (14%) Query: 17 ITVSVNDLDSFGQG--VARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 +T+ + LD+ G G VA + +P LP E + +++ Y++AK+V+ L S Sbjct: 114 LTLHIERLDAHGDGLAVAPEQDWVIAVPHTLPGEKVTAEIVGNERLYSKAKLVQVLEKSA 173 Query: 75 ERET--PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD-------VSEVIADV-- 123 R RC +FG CGGCQ Q Q K + + + V+ + Sbjct: 174 TRNDELVRCKYFGDCGGCQYQMIDYAHQLEIKRGVVEKAFARFSGLDPSLIPRVLPTIAS 233 Query: 124 PWGYRRRARLSLNYL-----------------------------PKTQQLQMGFRKAGSS 154 P Y R +L+ ++ + +GF G+ Sbjct: 234 PNQYNYRTKLTPHFELPYELRRGRRSGVRNNASADGNGVEADHEKPKYSVPIGFDCIGTK 293 Query: 155 DIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHT-APLSS 213 ++D+++CPI + LP + + + + +G ++LR + S Sbjct: 294 KVMDIEECPIATKTINKALPDAKQKVCN----------TIESFKNGATILLRDSLRTYGS 343 Query: 214 ADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQK 273 + L + ++ D+E++ T + F Q N + Sbjct: 344 FAEDLLVTEERATDGQVHKELDTEVV-TDHKATVKERVLTTKFESPAGTFFQNNRSILPS 402 Query: 274 MVARALEWLDVQPEDR---------VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 ++ E + ++D +CG G F+L LA+ V GVE ++ Sbjct: 403 LLDYVREAITSASSTTGEDSAQARYLVDAYCGSGLFSLCLASLFREVSGVEISSESIKYA 462 Query: 325 QQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIR 383 +NA LNG+ N F N E+ K + + V++DP R G ++Q++ L P Sbjct: 463 TKNAELNGITNTKFLAGNAEDIFGKIEYPADK-TTVIIDPPRRGCDQEFIRQLVNLAPKH 521 Query: 384 IVYVSCNPATLARDSEALLKA--GYTIARLAMLDMFPHTGHLESMVLFSR 431 IVYVSCN T ARD L+ Y I + D+FP T H+E + + R Sbjct: 522 IVYVSCNVHTQARDVGQLISKDPRYKIKSVRGADLFPQTHHVEGVAVLER 571 >UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MLF0_9CHLO Length = 549 Score = 320 bits (820), Expect = 8e-86, Method: Composition-based stats. Identities = 121/507 (23%), Positives = 195/507 (38%), Gaps = 78/507 (15%) Query: 4 FYSAKRRTTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKK--Q 60 F + + + + V + G+GV + G + +P E +T KK + Sbjct: 33 FRAPQEPVVIGEEVDVECTAVAFGGRGVCKFPGGFVILCERAVPGEKVHARITAIKKGGR 92 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-----D 115 YA A ++RL +P CPHF CGGC + D Q K + +M D Sbjct: 93 YAEAVKIQRLRPTPYHVNAPCPHFDRCGGCTWLDVAYDQQLAFKRDQVVDVMTRIARIND 152 Query: 116 VSEVIADVP-----WGYRRRARLSLNYLPKT--QQLQMGFRKAGSSD-IVDVKQCPILAP 167 ++ + YR + + + + G R AG +V+V + Sbjct: 153 ADRIVNAISPSQQRLRYRNKMEFAFAQVGDNSSGRPAFGLRPAGDHTGLVEVFTSGCVLQ 212 Query: 168 QLEA------------LLPKVRACLGSLQAMRHLGHVELV---------QATSGTLMILR 206 Q+ A + V A L G + + + + T +++ Sbjct: 213 QVVADKVLARCAAHLHAMADVSALLPVFNRRTGCGVLRSLTLRTAPLAGRCSGETAVMVI 272 Query: 207 HTAPLSSADREKLERFSHSEGLDLYL-------------APDSEILETVSGEMPWYDSNG 253 A L +E + F+ + +++I G Sbjct: 273 IAAALDRQGKETKKAFAALAADLATIDCVQSVVHERVGDNNENQITVLHGPATISITLRG 332 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASV 311 + S + F Q N + +V E + E + +LDLFCG+G F L LA++A V Sbjct: 333 VVFALSVKSFFQTNTKQAEILVESVEEACALTGENTETILDLFCGVGTFGLCLASKARHV 392 Query: 312 VGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG--------------F 357 G E VP VE ++NA N ++N TF+ +L + A + Sbjct: 393 YGCEIVPEAVEDAKRNAVANRIENATFWQADLAQLSESMLCADSKSMSKSIVFGKDVVRP 452 Query: 358 DKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLK-----------AG 405 D V++DPAR+G + I++ L RIVYVSCNPAT ARD L A Sbjct: 453 DVVIVDPARSGMDVTLVAILRSLGIPRIVYVSCNPATQARDVALLCDVSDNTQSGDLLAK 512 Query: 406 YTIARLAMLDMFPHTGHLESMVLFSRV 432 Y + +D+FPHT H+E++V+ RV Sbjct: 513 YRLISCIPVDLFPHTPHVENIVVLERV 539 >UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK1_ACHLI Length = 460 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 102/458 (22%), Positives = 185/458 (40%), Gaps = 47/458 (10%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + +I + + L G+G+ ++ +F+ LP E VTE A + Sbjct: 5 QIKINDLIEIEIKKLGINGEGIGYYHKLAVFVDNALPGEIITAKVTEIFPNRLLADIEEI 64 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI--------- 120 SP+R P + +CG QH + + + K L + V + I Sbjct: 65 KVKSPDRLEVMFPEYELCGAYSMQHVTYEKSLQIKRDILINALNRYVDKKIVYSKIKQTI 124 Query: 121 -ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 + P GYR + L + L + + G G ++ + V P+ P++ ++ V Sbjct: 125 GMNEPLGYRNKVSLPVRKL--EGKNKFGLYAKGGNEFIPVNDTPVHQPRINEIIQIVETL 182 Query: 180 LGSLQAMRHLGHVELVQATSGTL--MILRHT-----APLSSADREKLERFSHSEGLDLYL 232 + H H + + SG + M++R + +S +K E + + Sbjct: 183 MDQ-----HKFHAYIQKDKSGYMKSMVIRRSYTTGEVQVSFLLMKKFEGIAKFTEALVAQ 237 Query: 233 APDSEIL------------------ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQK 273 PD + E + G+ + N + P F Q+N + K Sbjct: 238 CPDIVSVFAFYTDKYKEQIFFTNNYENLFGKATINEKINHQTFSLYPEAFFQLNTVMADK 297 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + E ++QP D V+D + G + +A V +E V+ + + N + Sbjct: 298 FYNKMRELANLQPTDVVIDAYAGSAPISHYIAKDVKKVYAIEIDQRSVQSAILSLKRNNI 357 Query: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPA 392 +NVT + ++ + + D + DP R G ++QI+K +P +++Y SCNP+ Sbjct: 358 KNVTVIQSDFKKALKNLEV--DTIDAMFFDPPRTGLGYDTIKQILKYKPKKLIYGSCNPS 415 Query: 393 TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 TLA+D E LLK Y + L +DMFP+T +ES+ L Sbjct: 416 TLAKDLEDLLK-TYELKSLIPMDMFPYTPLVESVSLLE 452 >UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycoplasma RepID=A5IZA4_MYCAP Length = 446 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 105/443 (23%), Positives = 200/443 (45%), Gaps = 28/443 (6%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + T + +I V D G G + + +F+ LLP E A++ + + ++A AK Sbjct: 2 KLQNNTVVKNVIAV---DHSYEGLGTVKTDDYPIFVENLLPGERADILIKKANSKFAFAK 58 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-----DVSEVI 120 V++R ++S +R G + S Q K + +L K D+ ++ Sbjct: 59 VIKRYNESTKRIKVVNEKLMESGSAPLANISYSNQLEFKENFVKQLFKRNIHYTDILPIL 118 Query: 121 -ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 +D W YR + L L +++G + S ++++ +++ + E +L + Sbjct: 119 KSDYEWRYRNK--LLLFTKNVQNTIKIGLYEKNSHNLIEQDSYDLVSNEAENVLIWLSKN 176 Query: 180 LGSLQAMRH----LGHVELVQATSGTLMILRHTAPLSSADREK------LERFSHSEGLD 229 + ++ L + L ++ ++L TA + D K + F + E + Sbjct: 177 INKYDCFKNVKNALTSITLRESYVNKKIMLYFTAS-KAFDLSKQFVNDIAKEFENIETI- 234 Query: 230 LYLAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + + D + +S + D G ++ F Q+N+ +K+ L+ L++ Sbjct: 235 MVIVNDKVVYSYLSEKSYLIDKIGKFSFKYNWNSFFQINSNQTEKLYLLLLDNLNLDKSK 294 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 VLD +CG+G +L LA +A V G+E V V ++NA N + N F ++ + + Sbjct: 295 VVLDAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIYNTEFISGDVIKTID 354 Query: 349 KQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 D V++DP R+G + + +II ++P I Y+SCNP T+ RD + L+KAGY Sbjct: 355 S---INEKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYE 411 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 ++ L DMF T H+E + + Sbjct: 412 LSFLRPCDMFSQTYHIEMVAVLK 434 >UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n=1 Tax=Prochlorococcus marinus RepID=Y965_PROMA Length = 419 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 113/420 (26%), Positives = 188/420 (44%), Gaps = 36/420 (8%) Query: 45 LPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK 104 LP E A V KK + A +++ + SP R P+C + CGGC Q Q K Sbjct: 2 LPGEEALVKCEYMKKNFCLASLIKIIKKSPLRVNPKCSFYSDCGGCSMQEIEPHYQFAIK 61 Query: 105 S----AALARLMKH-DVSEVIADVP---WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156 AL+R+ K D E I+ P + YR ++ + + +G+ + S I Sbjct: 62 KKLLINALSRIGKLNDFPEPISITPSQFFHYRNKSTFPVYNESYGNTI-IGYYQRNSHKI 120 Query: 157 VDVKQCPILAPQLEALLPKVRACLGSLQA-----MRHLGHVELVQATSGTLMILRHTAPL 211 VD+ CP+L ++ L +R L +R G + + SG + Sbjct: 121 VDIDNCPVLDHKINKALSDIRLILKDNHINADHDIRRKGGLRHISIRSGINTNEVLITFV 180 Query: 212 SSADREKL---------ERFSHSEGL--DLYLAPDSEI----LETVSGEMPWYDS-NGLR 255 S+ +KL S+ G+ ++ P+++I E ++G YD + Sbjct: 181 SNFSIKKLLFPITNKLNGSESNVVGILNNIQPKPNNKIFGATTEILTGRDYIYDKFCHMD 240 Query: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPE-DRVLDLFCGMGNFTLPLATQAASVVGV 314 + F QVN +K + + + R++D + G+G ++PLA+ V+G+ Sbjct: 241 ILIGSTSFFQVNLVEAEKAINCIRNIISNTNKIVRIIDAYSGIGTMSIPLASDGYRVIGI 300 Query: 315 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVM 373 E E +NA +N ++ +TF ++++ + + K D ++LDP R G ++ Sbjct: 301 EINNEAHEIAIRNAEINNIKTITFENQDVTKYLPKILLPN---DFLILDPPRKGLDPSLI 357 Query: 374 QQIIKLEPIRIVYVSCNPATLARDSE-ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 I KL PI I Y+SCNPATLARD L + Y+I + D FP T HLE++V R+ Sbjct: 358 DVITKLMPIHICYLSCNPATLARDLSLILREHKYSIISITAFDFFPQTTHLETLVYLKRL 417 >UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNG0_9FIRM Length = 436 Score = 316 bits (811), Expect = 8e-85, Method: Composition-based stats. Identities = 107/442 (24%), Positives = 191/442 (43%), Gaps = 32/442 (7%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + + G+G+A K +F+PG P E E T++E K YA AK+ R L + R Sbjct: 1 MKLEIKKIGINGEGIAYDQKKPVFVPGTFPGEVVEATISEKKAHYAHAKINRILQKAHYR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-------ARLMKHDVSEV-IADVPWGYR 128 P G + Q K L A++ +H V ++ ++ + YR Sbjct: 61 RPSPSPIEEQLGH-PFFGIEYEKQLTFKLDLLTEALWKYAKVKRHWVRKINPSENEFSYR 119 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG------- 181 + +L + + +L G S+ V P++E + ++ A L Sbjct: 120 NQCKLPI--QERQGKLVCGLFSPNSNQFQVVHHFLTHDPEVERIRKELLAILNQHHFPAY 177 Query: 182 SLQAMRHLGHVELVQATSGTLMILRHTAP-LSSADREKLERFSHSEGLDLYLAPDSEILE 240 S + + L ++ + + L L+ + ++ H L + L+ Sbjct: 178 SHKTKQGLRYIVIRCIHGISQATLITGKDTLNKCLIDDFKKIPHLHSLHQSWNTSKQSLQ 237 Query: 241 TVSGE--------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 + + L SP F Q+N + + A+ +D P +++ Sbjct: 238 FFGERTKLLFGKKHLLIPFSSIYLHVSPEAFFQLNTKQAEALYHYAVSKVD--PCHILVE 295 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 +CG+G +L +++A V G+E P ++ ++NA LN L N F + + + K Sbjct: 296 AYCGIGVMSLLASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIAK 355 Query: 353 AKNGFDKVLLDPARAGAAGVM-QQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 K D +L+DP R+G M + I+K +P RI+Y+SCNPATLA++ L K Y I + Sbjct: 356 -KQKIDTLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAKNIAVL-KWKYQILTI 413 Query: 412 AMLDMFPHTGHLESMVLFSRVK 433 D+FP T H+E + L S+V+ Sbjct: 414 QAFDLFPQTPHVECLCLLSKVQ 435 >UniRef50_C6WAK7 Deoxyribonuclease/rho motif-related TRAM n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WAK7_ACTMD Length = 411 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 132/419 (31%), Positives = 181/419 (43%), Gaps = 42/419 (10%) Query: 26 SFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK-QYARAKVVRRLSDSPERETPRCPHF 84 G VARH G+ +F+ LP E V +T D + R V L SP+R TP CP Sbjct: 20 HGGHCVARHEGRVIFVRHALPGELVRVLITSDNGGSFCRGDAVEVLRSSPDRVTPPCPFS 79 Query: 85 GV--CGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADVPWGYR-RRARLSLNY 137 G CGGC QHAS Q+ K+A L RL + V+ +P G+R R RL L Sbjct: 80 GPGMCGGCDWQHASWGAQRDLKAAVVAEQLQRLAGVEREVVVEPLPGGHRDWRTRLRLAV 139 Query: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAP-QLEALLPKVRACLGSLQAMRHLGHVELVQ 196 + GFR S D++ V C I AP L+ +L +A R + + Sbjct: 140 GRDGKP---GFRGHHSHDVIPVDHCVIAAPHALDDVLD---------RAWRPGSELAVTL 187 Query: 197 ATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRL 256 ++G +H ++ A R R P L SG ++ Sbjct: 188 DSTGK----QHVTEIAPAQRRGGRR----------PTPGPSKLRRGSGGAVERAAD-RDW 232 Query: 257 TFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEG 316 F QV+ EW +P D DL+ G G F LA Q VE Sbjct: 233 LVRADGFWQVHPHAADTFARVVGEWAACEPGDHAWDLYGGAGLFASVLAAQVGETGSVEV 292 Query: 317 VPAL---VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGV 372 V + V GQ+ L L V ++ +E+ VT+ P+ V+LDP R GA A V Sbjct: 293 VESATNAVRDGQR--ALADLPQVKWHVGRVEDSVTRAPFTDRSPSVVVLDPPRKGAGAAV 350 Query: 373 MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + + P R+VYV+C+PA LARD L GY +A+L D FP T H+E + LF+R Sbjct: 351 LDAVAARRPARVVYVACDPAALARDVALLAGHGYRLAQLRAFDAFPMTHHVECVALFTR 409 >UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A8RH83_9CLOT Length = 553 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 98/376 (26%), Positives = 162/376 (43%), Gaps = 26/376 (6%) Query: 81 CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--DVSEVIAD-VPWGYRRRARLSLNY 137 CP +CGGCQ Q K L+K V +I P+ YR + + Sbjct: 176 CPVLNLCGGCQLLDMEYAKQLAFKQKQAEELLKGLCPVKPIIGMKDPFHYRNKVHAVFDR 235 Query: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH--------L 189 K + G + + ++ V++C I + + ++ +R L S + + L Sbjct: 236 DKKGN-IISGIYEENTHHVIPVEKCLIENQKADEIIGTIRGMLKSFKIRTYDEDTGFGLL 294 Query: 190 GHVELVQA-TSGTLMILRHTAPLSSADREKLE---RFSHSEGLDLYLAPDSEILETVSGE 245 HV + + ++G +M++ TA + R H E + + V G+ Sbjct: 295 RHVLIRKGFSTGEIMVVLVTASPVFPSKNNFVKALREKHPEITTIVQNINGRGTSMVLGD 354 Query: 246 MPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + G R S + F QVN + + +AL + ++ V+D +CG Sbjct: 355 KEHVLYGKGYIVDELCGCRFRISSKSFYQVNPVQTEILYEKALSLAGLTGQELVVDAYCG 414 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +G + + A V+GVE V NA++NG++N+ FY + + Sbjct: 415 IGTIGIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMAEQGEK 474 Query: 357 FDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 D V++DP R+G+ M + KL ++VYVSCNP TLARD + K GY A ++D Sbjct: 475 ADVVIMDPPRSGSTEEFMDAVGKLGAEKVVYVSCNPETLARDVRYMKKMGYRAAEAWLVD 534 Query: 416 MFPHTGHLESMVLFSR 431 MFP T H ES+VL + Sbjct: 535 MFPGTVHTESIVLLQK 550 >UniRef50_Q6MGU3 Uncharacterized RNA methyltransferase Bd3828 n=1 Tax=Bdellovibrio bacteriovorus RepID=Y3828_BDEBA Length = 393 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 121/442 (27%), Positives = 187/442 (42%), Gaps = 76/442 (17%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + I +++ L G GVARH G +F+P P E +T KK + A+ Sbjct: 8 RGAKAPLLGSKIKLNIEKLAIGGAGVARHEGMVVFVPQAAPNEEILAEITLVKKNFMEAR 67 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE------V 119 VV L+ SP R P CP CGGC QH + + Q+R K + +K + Sbjct: 68 VVEILTASPHRREPPCPVAHTCGGCNWQHITEEEQRRQKHTLVLETIKKFNRDLEFNYLP 127 Query: 120 IADVP--WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 I P YR R + PK + + GF S IV+ C I L +V+ Sbjct: 128 IQPSPRVLRYRNRIQ------PKFKNGRFGFFARNSHQIVETMDCLITEETLTDKFAEVK 181 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSE 237 A A D ++LE + EG Y E Sbjct: 182 AWAEKKNAK----------------------------DLQRLEMYIAEEGDVRYGLITDE 213 Query: 238 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 +G+ F QVN N+ ++ AL+W P +V DL+ G Sbjct: 214 -------------DDGI-------GFSQVNRFQNEDLLRTALDWAGDGPYKKVYDLYAGA 253 Query: 298 GNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 GNFT PLA + + ++GVE P LVE+ + +++ + +T++ ++E + + K+ Sbjct: 254 GNFTFPLAAKYAGSEIIGVELNPKLVERAR--SKITD-KRMTYFMSDVETYMRRASIGKD 310 Query: 356 GFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG------YTI 408 D V+LDP RAGA+ MQ + +P +I+Y+SC+P +LARD Y + Sbjct: 311 --DLVVLDPPRAGASEYTMQTLAAAQPRKIIYISCHPVSLARDLNWFFAQTQKLGIKYKL 368 Query: 409 ARLAMLDMFPHTGHLESMVLFS 430 R+ +MFP T H+E++ Sbjct: 369 DRVQTFEMFPQTDHVETIAELR 390 >UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6 Tax=Thermococcaceae RepID=Y1172_PYRFU Length = 411 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 110/427 (25%), Positives = 190/427 (44%), Gaps = 36/427 (8%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 + L+ G G+ + + +P P + EV TE +K+ A R L SP R R Sbjct: 5 IKRLNDDGFGILYNK---ILVPFSAPGDEVEVLKTEKQKRAKIATEWRLLRSSPIRVGAR 61 Query: 81 CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPK 140 C FG CGGC QH + + Q K L +++ +V + + +G+R R L++ Sbjct: 62 CKVFGKCGGCILQHINYNSQLEFKKEKLRKILGREVEIIPSPRIFGHRNRIDLAVTVN-- 119 Query: 141 TQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLGS-----LQAMRHLGHVEL 194 +GFR+ G +VDV++CP+ + + ++R + + G + Sbjct: 120 ----AIGFREKGKWWSVVDVEECPVFGKTSKKAIERLREYIEEEKVSTWKIREDSGFLRY 175 Query: 195 VQAT----SGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS----EILETVSGEM 246 + +G +M+ T D F+ S + + +I + E Sbjct: 176 MVLREGKFTGEIMVNFVTKEGELPDPTSYFDFADSIYWSINRSKSDVSYGDIEKYWGKEF 235 Query: 247 PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT 306 + +G++ P F Q N+ +V ++++ ++V+D++ G+G F + LA Sbjct: 236 IMEELDGVKYLIHPNSFFQTNSYQAVNLVKTVEKFVE---GEKVVDMYSGVGTFGVYLAK 292 Query: 307 QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 366 + VVG + +E +NA +N ++ F + E D+ GFD V++DP R Sbjct: 293 KGMKVVGFDSNAFAIEMANKNAEINNVEAEFFVASDREVDI-------KGFDTVIVDPPR 345 Query: 367 AGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES 425 AG +++++ P IVYVSCNP T + E L Y I L LDMFPHT H+E Sbjct: 346 AGLHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQL--NNYIIEELIALDMFPHTPHIEL 403 Query: 426 MVLFSRV 432 + R+ Sbjct: 404 VGKLRRL 410 >UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaerococcus RepID=C7RHR1_ANAPD Length = 457 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 102/459 (22%), Positives = 194/459 (42%), Gaps = 40/459 (8%) Query: 12 TTRQIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + I + + + +GK + G L + +V + K +AK++ + Sbjct: 2 RNKAIKEIKIEKMKYPNISQGYDEDGKLVEFKGGLLGQRVKVKAKKRNKDKIKAKLIETI 61 Query: 71 SDSPERE-TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIAD 122 S T C + +CGGC Q + + + K + L K D+ + Sbjct: 62 EKSDLENSTNTCDNPDICGGCAYQKLAYETELMLKVDMIKNLFKDNSIDYSGDIKINQSP 121 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLG 181 YR + + K L +G + +IVD C I+ + V+A Sbjct: 122 KTKAYRNKMEYTFGDSKKGGDLVLGLHRQNRFYEIVDTTNCNIIDGDFNTIRESVQAYFR 181 Query: 182 SLQAMRH--------LGHVELVQA-TSGTLMILRHTAPLSSADREKLERFSHS------- 225 + + L H+ + +A +G +M++ T S D ++ F + Sbjct: 182 EKKTDFYHKRTREGLLRHLIIRKAHRTGEIMVILVTTSDESFDSLRINLFLNKLLSIDLV 241 Query: 226 -EGLDLYLAPDS--------EILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMV 275 + + +Y + E L + G E + GL SP F Q N +K+ Sbjct: 242 GKIVSVYHVINDSPADAVIVEKLNLIYGKEFIKEEMLGLTFNISPFSFFQPNIYTAEKLY 301 Query: 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335 +A + ++ VLDL+ G G T +A +A + G+E V ++K +NA++N + N Sbjct: 302 QKAFDLANINQSMDVLDLYSGTGTITQVMAQRARTATGIEIVEEAIDKAWENAKINEIDN 361 Query: 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATL 394 + F ++ E++ K + +D ++LDP RAG + +++I+K++ + +Y+SCNP T Sbjct: 362 INFLCGDVLEEIEKV---GDKYDVIILDPPRAGISPKSLEKILKIDTEKFIYISCNPKTQ 418 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 + + + G+ I + D FP + HLE++ L +R K Sbjct: 419 VENLKEFINQGFEIKDYEIYDQFPKSRHLEAIALLTRKK 457 >UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SWR8_9FIRM Length = 495 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 179/379 (47%), Gaps = 26/379 (6%) Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--DVSEVIA-DVPWGYRRRARLS 134 +CP +CGGCQ + Q K + L+ V ++I + P+ YR + + Sbjct: 107 NSKCPISHLCGGCQYVDMPYEQQLAEKQKYIDDLLSVFGPVDKIIGMENPYHYRNKVTAA 166 Query: 135 LNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH------ 188 + K+ ++ G + G+ +I+ V+ C + + A++ + S + + Sbjct: 167 FRRM-KSGEIISGVYEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGT 225 Query: 189 --LGHVELVQAT-SGTLMILRHTAPLSSADREKLERF---SHSEGLDLYLAPD------- 235 + H+++ +G +M++ TA ++ L + +H E + + Sbjct: 226 GLIRHLQIRVGRKTGQIMVIIVTASPVFPSKKNLAKALVTAHPEITTVVQNINMKDTSMV 285 Query: 236 -SEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 + + V G+ D G R SP F QVN + + +A+++ D++ ++ V+D Sbjct: 286 IGDRNQVVYGKGYIEDILCGKRFRISPGSFYQVNPEQTEVLYGKAIKYADLKKKETVIDA 345 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 +CG+G + + +A V+GVE A V + N ++N +QNV Y + + Sbjct: 346 YCGIGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRFMVDVADE 405 Query: 354 KNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 + D V +DP R+G+ M +I L P R+VY+SC P +LARD + + K GY + R+ Sbjct: 406 GDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTKHGYQVIRMT 465 Query: 413 MLDMFPHTGHLESMVLFSR 431 +DMFP T +E++VL +R Sbjct: 466 PVDMFPLTRGVETVVLLTR 484 >UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusobacteriaceae RepID=D1AXU5_STRM9 Length = 466 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 103/466 (22%), Positives = 186/466 (39%), Gaps = 46/466 (9%) Query: 12 TTRQIITVSVNDLDSFG--QGVARHNGKTLFI-PGLLPQENAEVTVTEDKKQYARAKVVR 68 I+ + + +D G +++ + F ++P + + + + K + + Sbjct: 2 KKGDIVNLDIVGIDFPAKPYGYLKNDDRKCFANTNVVPGQKIKARIGKIKNNKIELRDIV 61 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--------HDVSEVI 120 + +S P C F CGGC Q+ S + Q K+ + +L+ + V Sbjct: 62 IIENSENVAKPFCEKFNSCGGCSFQYLSYEKQAELKANLVYKLIDNSIKNKNYEKLPIVT 121 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKV--- 176 YR + S K + +G K S DIV+V +C ++ ++ Sbjct: 122 MGNDKEYRNKMEFSFGNEYKDGPIILGLHKKNSFHDIVNVNECRLMDENFRKIVRFTNDF 181 Query: 177 --RACLGSLQAMRHLGHVELVQATSGTL-----MILRHTAPLSSAD-----REKLERFSH 224 + + + H+G + + G + + T+ + + D +EKL Sbjct: 182 FSKKDISFYHRLTHIGFLRNLVIRKGEKTKELGVNIVTTSQIENYDIIDEYKEKLLCLDL 241 Query: 225 SEGLDLYL-----------APDSEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQ 272 S GL + D EI+ + G+ + L SP F Q N+ + Sbjct: 242 SMGLKSIIHTINDNKSDSVRADKEII--LYGKRDITERLFDLSFNVSPYSFFQTNSFGVE 299 Query: 273 KMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA 328 K+ + L + V DLF G G ++ + V G+E + V K +NA Sbjct: 300 KLYQEVINNLLFITKNDEKPIVFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENA 359 Query: 329 RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYV 387 NG+ N F ++ E + + D ++LDP R+G + ++++ I+YV Sbjct: 360 IKNGITNAKFIAGDVFEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYV 419 Query: 388 SCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 SCNP TLA D + Y + R+ +DMF +T H+E +VL RVK Sbjct: 420 SCNPKTLAEDLKIFEYNSYILKRVVCVDMFGYTPHVECIVLIQRVK 465 >UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCG8_9FIRM Length = 542 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 106/439 (24%), Positives = 191/439 (43%), Gaps = 31/439 (7%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 + + G+G+ N +F+PG L E +V + +K+YA V + S +R P+ Sbjct: 5 IKKIGINGEGIGYLNRTPVFVPGALLDEEIDVKIVTKEKRYAIGSVNYIIKKSKDRIQPK 64 Query: 81 CPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHDVSEVIADVP-WGYRRRAR 132 C C GC A Q + K + L + + V +VI +GYR + + Sbjct: 65 CFVHHACKGCPLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYRNQCK 124 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHV 192 L ++ L K QL GF S+ ++K+C + +E + +V L + H Sbjct: 125 LPVS-LNKEGQLCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPYNHHT 183 Query: 193 E------LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP-----------D 235 + +V+ G T +E H G+ Sbjct: 184 KSGIRSLVVRGFDGKYQCTLVTGH-DELSCSLIEDILHIRGMYSLWQSIHTVKNTAEVFG 242 Query: 236 SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 +++ + + +GL L SPR F Q+N + + + + R+++ + Sbjct: 243 KQMVHLGGEKQLPFHFDGLDLEVSPRSFFQLNTAQAKVLYQTIASLVKGHKK-RIVEAYS 301 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G+G +L L +A ++G+E + V QNA+ N ++V F ++ +T K Sbjct: 302 GIGAISLYLRDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAASKLTYLSKNKE 361 Query: 356 GFDKVLLDPARAGAAGVM-QQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 D +++DP R+G M + +++ + I+YVSCNPATL ++ L + Y + R+ + Sbjct: 362 -IDVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEK-YRVQRVIPI 419 Query: 415 DMFPHTGHLESMVLFSRVK 433 DMFP+T H+E++VL S K Sbjct: 420 DMFPNTQHVETVVLLSHKK 438 >UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5EMJ7_9FIRM Length = 554 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 97/393 (24%), Positives = 166/393 (42%), Gaps = 28/393 (7%) Query: 64 AKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--DVSEVIA 121 K +R CP CGGCQ Q + K + L + V +I Sbjct: 164 GKKTEWKKTGKKR--SLCPVEKYCGGCQMLDMEYTEQLKRKQKVVEDLFRGVCPVKPIIG 221 Query: 122 D-VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 P+ YR + + K + G + S D++ V+ C I + + ++ +R L Sbjct: 222 MKDPFHYRNKVHAVFDRD-KRGNIISGIYQENSHDVIPVETCMIEDKKADEIIGTIRGML 280 Query: 181 GSLQAMRH--------LGHVELVQA--TSGTLMILRHTAPLSSADREKLERF--SHSEGL 228 S + + L HV + +A T+ +++L +P+ + ++ H E Sbjct: 281 KSFKIRTYDEDTGYGLLRHVLIRRAFSTNEIMVVLVTASPVFPSKNNFVKALREKHPEIT 340 Query: 229 DLYLAPDSE--------ILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARAL 279 + + + G+ D G + S + F Q+N + + +AL Sbjct: 341 TIIQNINGRGTSMVLGNKENVLYGKGYIVDELCGCKFRISSKSFYQINPVQTEVLYGKAL 400 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 E ++ ++ V+D +CG+G + + QA V+GVE V+ NA++N + N+ FY Sbjct: 401 ELAGLKGQEVVIDAYCGIGTIGIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFY 460 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDS 398 + + + D V++DP R+G+ M I KL ++VYVSCNP TL RD Sbjct: 461 CNDAGRFMVNMAERGDKADVVIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVRDV 520 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + K GY + +DMFP T H E +V R Sbjct: 521 RYMKKLGYAAEGVWPVDMFPATRHTEIIVELCR 553 >UniRef50_B9R3Z1 tRNA (Uracil-5-)-methyltransferase superfamily n=2 Tax=Rhodobacteraceae RepID=B9R3Z1_9RHOB Length = 410 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 117/419 (27%), Positives = 181/419 (43%), Gaps = 21/419 (5%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + +L G G+A +++ G LP E E + Q R + LS SP+R Sbjct: 6 LEITELGHRGDGIAFTGTGPVYVAGGLPGETVEAEI-----QNGRVQNPDYLSQSPDRIE 60 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-----HDVSEVIADVPWGYRRRARL 133 P C H+ CGGC QH + K + + +K +V++ IA G RRRA Sbjct: 61 PVCRHYAACGGCSVQHLAEAPYLSWKRNLVEKALKTQGIDAEVAQTIAATEGG-RRRA-- 117 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 + + + +G+ + S +VD+ +CP+L P + + L +++ L + Sbjct: 118 AFTATRAGRAVLLGYHEKASHKLVDISECPVLDPSITSALKGLKSLAADLVPKNGELRIT 177 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG 253 ++ TSG + L + + L L+ + E+L V P D G Sbjct: 178 VLSTTSGLDVAFDKADKAYDRKIPALSQKTVELDLAR-LSVNGEVLLEV--RPPLLDMGG 234 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 L P F Q Q + + V V DLF G+G F L LA A +V Sbjct: 235 TGLVPPPGGFTQATLAAEQALSELVV--AGVGKAKTVADLFSGVGTFALRLARTA-NVHA 291 Query: 314 VEGVPALVEKGQQNARL-NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGV 372 VEG A + ++ R GL+ VTF +L P F V+ DP RAGA Sbjct: 292 VEGDSAAIAALDRSLRKPQGLKKVTFEKRDLFRR-PLVPEELEPFAAVVFDPPRAGAQAQ 350 Query: 373 MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + + K + IV VSCNPATLARD L+ GY + + +D F + H+E++ + R Sbjct: 351 AEMLAKSKVKTIVAVSCNPATLARDLRILIDGGYALHTVTPVDQFHFSPHIEAVAVLKR 409 >UniRef50_A6G9S9 RNA methyltransferase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G9S9_9DELT Length = 482 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 135/452 (29%), Positives = 194/452 (42%), Gaps = 44/452 (9%) Query: 16 IITVSVNDLDSFGQGVARHNG-----------KTLFIPGLLPQENAEVTVTEDKKQYARA 64 +TV ++DL G GV R + F+ G LP E + V + K++ R Sbjct: 11 ELTVRIHDLAHGGAGVGRPESETGTPEGEAETRVCFVDGALPGERVRMRVDTENKRWLRG 70 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVI 120 V L +PER C CGGC QH Q + K+ L RL + Sbjct: 71 HCVEVLEAAPERSEAPCALADRCGGCGWQHVEASAQAKLKAKIVEGQLRRLPVVVAESLP 130 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + P GYRRRAR ++Y L++GF S IVD CP+L P L+ + +VRA Sbjct: 131 SPSPLGYRRRAR--VHYRKTAAGLELGFYGQRSHAIVDCATCPVLDPALDWAVQQVRAWA 188 Query: 181 GSLQAMRHLGHVELVQATSGTLMIL-----RHTAPLSSADREKL---------ERFSHSE 226 L E+V ++G+ ++L RH L +A R L E Sbjct: 189 QWLPERG-----EVVGLSNGSEVVLGLPGVRHDPELEAAIRAVLGEPKDGEDSEESKEPV 243 Query: 227 GLDLYLAPDSEILETVSGEMPWYDSNGLRLTFS--PRDFIQVNAGVNQKMVARALEWLDV 284 L + L E + V D +G S P F Q A N+ +V + Sbjct: 244 LLGVQLRGGRERV-GVGRTHLELDGDGPTPPVSQGPFTFSQAQAAQNRNLVEHVAARVRE 302 Query: 285 QPED-RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 D RVL+L G+GNF+ LA A +V V+G + Q+ A GL + Sbjct: 303 SGRDARVLELHAGVGNFSRVLARSAKAVWAVDGDREAIANLQRTAERWGL-RINAKRGQA 361 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E + K + +D V+LDP R+G + ++ + R+VYVSC+PATLARD LL Sbjct: 362 ERLLAKLATSGRRYDVVVLDPPRSGIGEAAARDLLSVVRDRVVYVSCDPATLARDLAVLL 421 Query: 403 KA--GYTIARLAMLDMFPHTGHLESMVLFSRV 432 G +A L + DM P T +E + +RV Sbjct: 422 AEGSGLELADLRVFDMMPMTPEVEVVATLNRV 453 >UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMX5_9FIRM Length = 383 Score = 311 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 28/380 (7%) Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--HDVSEVI-ADVPWGYRRRARLSLN 136 +CP C GCQ + + + Q K +L+ VSE+I AD P+ YR + + Sbjct: 5 KCPVAKKCSGCQLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDPYNYRNKVQAVFR 64 Query: 137 YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-------- 188 + ++ G ++ + IV + C + + + ++ +R L S + + Sbjct: 65 -SDRNGRIISGVYQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTERGF 123 Query: 189 LGHVELVQA-TSGTLMILRHTA-----PLSSADREKLERFSHSEGLDLYLAPDSEIL--- 239 L HV + +G +++ + ++RF + + E+L Sbjct: 124 LRHVLVRVGKNTGEILVTLVGGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEMLLLG 183 Query: 240 ---ETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 E + GE D G R SP F Q+N +K+ A++ + +D +LD + Sbjct: 184 ENNEVLYGEGYITDILCGKRFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYS 243 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAK 354 G+G + + V G+E + V +N NGL N+ F + E + K+ Sbjct: 244 GIGTIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAKLG 303 Query: 355 NGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 +D V+LDPAR GA + ++K+ P RIVY+SCNPAT ARD + L K YT+ + Sbjct: 304 THYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKK-YTVTDIQP 362 Query: 414 LDMFPHTGHLESMVLFSRVK 433 DMFPHT H+E +V SR + Sbjct: 363 FDMFPHTRHVECVVSMSRKE 382 >UniRef50_B9XDW9 RNA methyltransferase, TrmA family n=1 Tax=bacterium Ellin514 RepID=B9XDW9_9BACT Length = 440 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 118/427 (27%), Positives = 183/427 (42%), Gaps = 71/427 (16%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 TV+ +D+ G+GVAR + +F+P ++ E AEV +TE KK++AR K+VR L SPER Sbjct: 68 TVTFHDIAFGGEGVARVDEFVVFVPFVMVGEEAEVEITEVKKRFARGKLVRVLKTSPERV 127 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIA-DVPWGYRR 129 P C +FG CGGCQ QH Q K + L + V VI P+GYR Sbjct: 128 KPLCQYFGDCGGCQYQHMDYAAQLLMKHKQICDLFERIGGIDPKVVGPVIPCPQPYGYRN 187 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R + + Q L +GF +A + +VD+++C I P + + VR Sbjct: 188 RIMIRSQWDKFKQGLNIGFIRADNRLVVDIEECKISEPAVNEQIQHVRKNPPP------- 240 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY 249 G ++LR R Sbjct: 241 --------KGGIKVVLRVAPEGWEVPR--------------------------------- 259 Query: 250 DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 F Q N + ++V A ++L ++D++CG+G F+L L Sbjct: 260 -----------DSFFQNNFFLLPELVGVARQFLKDSGSRFLVDVYCGVGFFSLELGDLVE 308 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPARAG 368 VGVE ++ ++NA L+N F EE + + VL+DP R G Sbjct: 309 GFVGVELDQLAIKAARRNAEKRNLKNGEFVTGRAEEMLPGLMQRFSPEATTVLIDPPRTG 368 Query: 369 A-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESM 426 ++ + + P +++YVSC+PAT+ARD L G + + ++ DMFP T H+E + Sbjct: 369 CLPESLELLRQTRPNQLIYVSCHPATMARDLNVLCAEGVFELVKVIPCDMFPQTAHVECV 428 Query: 427 VLFSRVK 433 R+K Sbjct: 429 ADL-RLK 434 >UniRef50_O54099 Uncharacterized RNA methyltransferase SCO5901 n=27 Tax=Actinomycetales RepID=Y5901_STRCO Length = 458 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 105/447 (23%), Positives = 169/447 (37%), Gaps = 45/447 (10%) Query: 11 TTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTE--DKKQYARAKVV 67 + + V V + G +AR G+ LF+ LP E VTE + ++ RA V Sbjct: 24 SLVGEEYEVEVGPVAHGGHCIARTSEGQVLFVRHTLPGERVVARVTEGEEGARFLRADAV 83 Query: 68 RRLSDSPERETPRCPHFG--VCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPW 125 L S +R CP G CGGC QHA Q+R K +A ++ + W Sbjct: 84 EILDPSKDRIEAPCPFAGPGRCGGCDWQHAKPGAQRRLKGEVVAEQLQRLAGLTPEEAGW 143 Query: 126 ------------------GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAP 167 +R R + +++ + G R+ S +I + C I A Sbjct: 144 DGTVMPAEGDKLPAGQVPSWRTRVQFAVDADGR-----AGLRRHRSHEIEPIDHCMIAAE 198 Query: 168 QLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEG 227 + L + R G + S ++ P + +L+R Sbjct: 199 GVSELGIERRDWPGMATVEA------IAATGSQDRQVILTPRPGARLPIVELDR---PVS 249 Query: 228 LDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + D + ++ F QV+ +V ++ L + Sbjct: 250 VMRVGEKDGGVHRVHGRPFVRERADDRTYRVGSGGFWQVHPKAADTLVTAVMQGLLPRKG 309 Query: 288 DRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 D LDL+CG+G F LA + +V+G+E VE + N V +E Sbjct: 310 DMALDLYCGVGLFAGALADRVGDQGAVLGIESGKRAVEDARHNLAA--FDRVRIEQGKVE 367 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 + + + D ++LDP RAGA +Q + L RI YV+C+PA LARD Sbjct: 368 SVLPRTGI--DEVDLIVLDPPRAGAGRKTVQHLSTLGARRIAYVACDPAALARDLGYFQD 425 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFS 430 GY + L + D+FP T H+E + + Sbjct: 426 GGYRVRTLRVFDLFPMTAHVECVAILE 452 >UniRef50_C2EN78 TrmA family tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lactobacillus ultunensis DSM 16047 RepID=C2EN78_9LACO Length = 465 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 99/453 (21%), Positives = 188/453 (41%), Gaps = 35/453 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 + + I+ + ++ L G G+A+++ KT+F+ LP E + V K K V Sbjct: 13 QVKMKKDDILDLKIDSLSPEGGGLAKYDDKTVFVRDALPGEEVKAKVLSIHKNTIDTKSV 72 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-KHDVSEV----IAD 122 + +P R + G + + D Q + K + +L+ K+ EV I Sbjct: 73 DIIKANPARVYGSDEKWANDGYARLANLKYDQQLKFKEDRIKKLLNKYGFKEVKVNKILP 132 Query: 123 VPW--GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 P GYR L + + QL++GF + + + + + I + + VR L Sbjct: 133 SPLTKGYRNEIVLPVREV--KGQLEVGFFEPRTGRFIPLNKSIITNEAVVTAVYAVRDIL 190 Query: 181 GSLQAMRH--------LGHVELVQATSGTLMILRHTAPLSSADREKL--------ERFSH 224 L+ + + +++ ++ MI+ T DR L E+ + Sbjct: 191 RKLKVPAYDPNTNSGFIRDIDVRRSQGKKGMIV--TLITHENDRVDLPEIVGLITEKLHN 248 Query: 225 SEGLDLYLAPDS-------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 G+ L P + + + +G++ SP+ + Q N + + Sbjct: 249 VNGVVLNYNPHKTDEIFGKSNIPLWGNDYVEDELDGIQFKISPKSYFQANGSQLKPITDL 308 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 AL LD++ D+++D FCG+G L A + A+V G++ ++ ++NA N + N T Sbjct: 309 ALSLLDLKDTDKLIDAFCGVGTVGLLAAKKVAAVRGIDAERVSIQDARENADTNKIDNAT 368 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLAR 396 +Y+ ++E+ +++ ++ P G G + K+ P RIVY S NP T+ R Sbjct: 369 YYNGSVEQVLSRFAKNDEKGTVIMATPPAKGLSHGFVDAAAKMHPRRIVYGSTNPDTMVR 428 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 D K GYT + +D P T ++ + Sbjct: 429 DLACFKKKGYTCTEITPIDTAPQTPEVKCFGVL 461 >UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1 Tax=Nanoarchaeum equitans RepID=Y053_NANEQ Length = 447 Score = 307 bits (788), Expect = 4e-82, Method: Composition-based stats. Identities = 106/438 (24%), Positives = 183/438 (41%), Gaps = 45/438 (10%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + D G GV G + +P P + E K + ++V+ + +SP R Sbjct: 27 MKIYIEGFDEKGYGV----GNNIHVPFAYPGDIVE-VKVRRKGKKKIGEIVKIIEESPYR 81 Query: 77 ETPR-CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSL 135 + + C H G CGGC Q K + L +D + + YR R + Sbjct: 82 TSNKYCAHLGKCGGCLWGLMDYQYQLEFKKKVIENLFGYDKDIIPSPKTIYYRNRMDYPI 141 Query: 136 N--YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA-----MRH 188 K G+ + +K+C +L+ + E ++ + + + ++H Sbjct: 142 YNKVSLKEPGKWYGY--------IPIKECKMLSKEAEIIINEFNKFIEKYKIPSWDTVKH 193 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL-----DLYLAPDSEILETVS 243 G + + G R ++ ++ E + E + +Y ++ + Sbjct: 194 TGFLRYLVIREGKFTKERMIHIITYKRKKFEELWDFIENIKDLVTSVYWGIREDLGDVSI 253 Query: 244 GEMPWYDSN---------GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 E ++ + SP F Q N+ +V E+L+ D VLDL+ Sbjct: 254 SEKLYHYYGSKFLRERILDIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLY 313 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 G+G F+L +A + V+G+E V VE + NA +N + F +E K P K Sbjct: 314 SGVGLFSLQIANEVKKVIGIEIVEEAVEMAKLNASINNID-AEFIASPVE----KAPIIK 368 Query: 355 NGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 +K+++DP RAG ++ I K+ P IVYVSCNP T RD L GY I + Sbjct: 369 A--NKIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKL--KGYKIIDMQP 424 Query: 414 LDMFPHTGHLESMVLFSR 431 LDMFP+T H+E+++L + Sbjct: 425 LDMFPNTPHIENVILMKK 442 >UniRef50_A6DJC1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJC1_9BACT Length = 403 Score = 307 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 113/424 (26%), Positives = 188/424 (44%), Gaps = 43/424 (10%) Query: 19 VSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + ++++ G G R + G+ F+P +P E +V++ +D K + R +++ + S R Sbjct: 7 LVIDNIAYGGDGAGRLDDGRVCFVPFSVPGEKVKVSIVKDNKNFCRGEILELVEASENRV 66 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---------DVSEVIADVPWGYR 128 C +FG CGGC QH D Q + K A +++K DV V + W YR Sbjct: 67 EAPCQYFGECGGCAYQHIDYDEQVKIKEAQFRQVLKRIGGLNIDEDDVEVVSSTNKWNYR 126 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 R L+ +T ++ GF + +V +K+C + + L+P + Sbjct: 127 NRISLNARRT-ETDEVIYGFIARDNRSLVRIKECLLAQAPVNELVPDL--------NKTK 177 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPW 248 GH + LR T +S+++E + + + + L E+ Sbjct: 178 WGHKNRQRDRP-----LRATIRHASSNKETVAFYGKAP---VGLPWRREV---------- 219 Query: 249 YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL-DVQPEDRVLDLFCGMGNFTLPLATQ 307 N F QVN V + + E + ++ V+D FCG G ++ L + Sbjct: 220 --YNDREFVMPAGSFSQVNRDVAEALQRMCAEIISSLEACTFVIDAFCGSGFLSMGL--R 275 Query: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA 367 VVG+E VE NA+ GL + ++ + + ++ ++LDP RA Sbjct: 276 DVKVVGLEIDAKGVEAANFNAQDQGLTTHKYVAGDVNKLLRQRLGKLAPETTLILDPPRA 335 Query: 368 GA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 G G ++ I K P I+YVSC+P TL RD + +L GY +LAMLDMFP T H ES+ Sbjct: 336 GVGPGTIKAISKRSPKWILYVSCDPGTLGRDLKEILPLGYKHKKLAMLDMFPQTSHFESL 395 Query: 427 VLFS 430 +L Sbjct: 396 ILLE 399 >UniRef50_C5PD16 tRNA-methyltransferase family protein n=2 Tax=Coccidioides RepID=C5PD16_COCP7 Length = 578 Score = 307 bits (786), Expect = 7e-82, Method: Composition-based stats. Identities = 107/462 (23%), Positives = 186/462 (40%), Gaps = 57/462 (12%) Query: 18 TVSVNDLDSFGQGVA--RHNGKTLFIPGLLPQENAEVTV--TEDKKQYARAKVVRRLSDS 73 V++ +L S G G+A +P LP + ++ V T ++ Y+ A + S Sbjct: 123 EVTITELSSTGDGLALSPARDHVYAVPFTLPGDTVKIRVYRTMGRESYSLADFIEVTKPS 182 Query: 74 PERETP--RCPHFGVCGGCQQQHASVDLQQRSKSAALARLM---------KHDVSEVIAD 122 P+R+ +C +F CGGCQ Q + Q + K + + + E Sbjct: 183 PQRDDSLIKCQYFAKCGGCQFQMLPYEDQLKHKKRIIEKAYINFSGLNSVQVPGIEETMG 242 Query: 123 VPWGYRRRARLSLNYLPKT----------QQLQMGFRKAGSSDIVDVKQCPILAPQLEAL 172 P Y R +L+ ++ + L +GF G ++D++ CP+ + Sbjct: 243 SPLQYGYRTKLTPHFSLPGRVKKAAHNLTEPLNIGFMMKGRRKVMDIEDCPLGTDIVRVG 302 Query: 173 LPKVRA-CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L R L S+ + + + + T I R ++ +++ + R H + Y Sbjct: 303 LKNERQRVLDSVHQFKAGATLLVRENTRR---IPRDKVEENATEKKGVIRIDHPD----Y 355 Query: 232 LAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR-- 289 + S I + + D F Q N + E D Sbjct: 356 IEEKSYITDQKGISSEYID--DYLFRNVAGTFFQNNNSILSPFTQYVRERAVPASADSDP 413 Query: 290 -------VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 +LD +CG G FT+ L+T S +GV+ +E ++NARLN L+N F + Sbjct: 414 SKPKLKYLLDAYCGSGLFTIALSTVFRSSLGVDVAAGSIESARENARLNKLKNTGFAAAD 473 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 + P+ + +++DP R G ++Q++ P R+VYVSCN T ARD + Sbjct: 474 AAKLFQDVPYPPHQ-TLLVIDPPRKGCDTNFLKQLLAFGPARVVYVSCNVHTQARDVGVM 532 Query: 402 LKA-----------GYTIARLAMLDMFPHTGHLESMVLFSRV 432 ++ Y I + D FP TGH+ES+ + +RV Sbjct: 533 VRGDTGDGSGKSSVRYEIESIKGFDFFPQTGHVESVAVLNRV 574 >UniRef50_Q8UHE7 Uncharacterized RNA methyltransferase Atu0735 n=22 Tax=Rhizobiales RepID=Y735_AGRT5 Length = 416 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 111/426 (26%), Positives = 184/426 (43%), Gaps = 26/426 (6%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 TV++ L + G G+A +++P LP E + +D+ V+ S +R Sbjct: 5 TVTIKSLGAQGDGIAHCPDGPVYVPFALPGETVAIAKVKDQ-----GTVMSITEASADRR 59 Query: 78 TPRCPHFGV------CGGCQQQHASVDLQQRSKSAALARLMK-----HDVSEVIADVPWG 126 P C HFG CGGC QH + K + ++ V +++ P G Sbjct: 60 DPVCRHFGPEGINGTCGGCSLQHLADQPYHAFKRELVVSALRSKGLTPPVDDLVICRP-G 118 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 RRRA + K L +GF +A S IV +++CP+ +P + + +RA S+ A Sbjct: 119 ERRRAVFAARKTEKG--LLLGFSQANSHHIVAIEECPVTSPGIVSRFDAIRAIGLSMVAN 176 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEM 246 + +++ SG + + ++ R L + ++ EIL + + Sbjct: 177 AEPFRITVLETLSGLDISVEGIKSVNDKQRRTLTETVLAMRGIARVSLSGEIL--IEPQK 234 Query: 247 PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT 306 P + G+ ++ F Q M L + R+ DLFCG G F L LA Sbjct: 235 PIIEFGGIPVSPPAGGFTQATKQAEDAMAELMLAHVG--KSKRIADLFCGSGTFALRLA- 291 Query: 307 QAASVVGVEGVPALVEKGQQNAR-LNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 + V VE ++ AR GL+ V+ +L KN +D V+ DP Sbjct: 292 RIGRVHAVEAEDKALKALDFAARNTQGLKPVSVEKRDLFRRPLMTSELKN-YDAVVFDPP 350 Query: 366 RAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES 425 RAGA +++ + +IV VSCNP TLARD L + GY + R+ +D F + H+E+ Sbjct: 351 RAGAEVQCKELARSTVKKIVAVSCNPLTLARDLAILTEGGYRVTRVTPVDQFLWSPHVEA 410 Query: 426 MVLFSR 431 + + + Sbjct: 411 VAVLEK 416 >UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780 n=3 Tax=Thermococcaceae RepID=Y1078_PYRAB Length = 405 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 108/428 (25%), Positives = 184/428 (42%), Gaps = 47/428 (10%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 + L+ G GV K + +P P + V E K+ A + + SP R PR Sbjct: 5 IRKLNDDGFGVL----KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPR 60 Query: 81 CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPK 140 C FG CGGC QH + D Q K L R++ +V V + +G+R R L++ Sbjct: 61 CKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITKDG- 119 Query: 141 TQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLGS-----LQAMRHLGHVEL 194 +GFR+ G IVD+ +CP+ + +++ + + G + Sbjct: 120 -----IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRY 174 Query: 195 VQATSG----TLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY- 249 + G +M+ T + D F +Y + + + G++ + Sbjct: 175 MVLREGKFTEEVMVNFVTKEGNLPDPTNYFDFD-----SIYWSVNRSKSDVSYGDIERFW 229 Query: 250 -------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 + + P F Q N+ +V + E ++ +++LD++ G+G F + Sbjct: 230 GKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE---GEKILDMYSGVGTFGI 286 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 LA + +V G + +E ++N +N + F + E K GFD V++ Sbjct: 287 YLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK------GFDTVIV 339 Query: 363 DPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 DP RAG +++++ + +P IVYVSCNP T ARD + L Y I + LDMFPHT Sbjct: 340 DPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML---DYRIDEIVALDMFPHTP 396 Query: 422 HLESMVLF 429 H+E + Sbjct: 397 HVELVAKL 404 >UniRef50_A4FAQ4 23S rRNA methyltransferase/RumA n=2 Tax=Actinomycetales RepID=A4FAQ4_SACEN Length = 410 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 119/438 (27%), Positives = 175/438 (39%), Gaps = 56/438 (12%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ-YARAKVVRRLS 71 T +++ V V + G VAR+ G+ +F+ LP E VTED + RA V + Sbjct: 8 TGRLLEVEVGPVAHGGHCVARYEGRVVFVRHALPGEVVVAEVTEDGGGGFCRADAVEVRT 67 Query: 72 DSPERETPRCPHFG------VCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIA 121 +P R P CP CGGC QHAS + Q+ KSA L R+ D+ + Sbjct: 68 AAPGRVAPPCPLADMARGRDRCGGCDWQHASGETQRELKSAVVTEQLKRIAGIDLPVRVR 127 Query: 122 DVPWG---YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 ++P G +R RAR++++ + GFR S +V + CPI + + R Sbjct: 128 ELPGGLLRWRTRARVAVDR-----GGRAGFRAHRSHRVVPAEDCPITVAEAIQDVTSRRW 182 Query: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI 238 GS VE+ ++ + + H + R S Sbjct: 183 RPGS--------EVEVAADSADQVHVTAHDRRRGGRRVSRQVRGSGVA------------ 222 Query: 239 LETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 ++ G + + F QV+ A DL+ G+G Sbjct: 223 ---------HEEAAGRTWELAAQGFWQVHVAAADTFAAVVSRMAAAPEGGVAWDLYGGVG 273 Query: 299 NFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 F LA Q SV+ VE VE N R L V F E+ V + Sbjct: 274 LFAAGLAEQVGPTGSVLLVESSRRAVEDAVSNLR--DLPQVEFRAGTAEDVVRDE--GLP 329 Query: 356 GFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 D V+LDP R GA V + + P RIV+V+C+PA LARD ++ GY + + Sbjct: 330 SPDVVVLDPPRKGAGREVAEAVCAHRPSRIVHVACDPAALARDVGLFVEGGYRLVEIEAF 389 Query: 415 DMFPHTGHLESMVLFSRV 432 D FP T H+E + L RV Sbjct: 390 DAFPMTHHVECIALLERV 407 >UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Bacteria RepID=C7N354_SLAHD Length = 401 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 96/391 (24%), Positives = 155/391 (39%), Gaps = 39/391 (9%) Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE-------VIADVPWGYRRRAR 132 CP CGGC Q K + L + + + VP YR + Sbjct: 8 SCPIDNRCGGCSWLRVPYGQQLARKQQHVDELFADLIDDGTQCLPILGMKVPLHYRNKVV 67 Query: 133 LSL----NYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-----L 183 + + +++ G + G+ ++D +C I Q +A++ +R + Sbjct: 68 SPFVGIYDKRTRRRRILCGMYERGTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEPY 127 Query: 184 QAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKLERF---SHSEGLDLYLAPDS 236 R G + Q SG +M+ T +K R H E + +S Sbjct: 128 DEDRDEGFLRHAQVRVGHNSGEVMVTLVTRTEQFPTAKKFVRALVSRHPEITTVVQNVNS 187 Query: 237 EILETVSGE---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + G+ GL S F QVN+ + + + A+ + Sbjct: 188 RKTNVIMGDKERKLYGPGFILDTLCGLSFRISSTSFYQVNSTQTEVLYSTAIRMAKLTGT 247 Query: 288 DRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 + V+D +CG G L AA ++GVE V + NAR NG+ N F Sbjct: 248 ETVMDAYCGTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFVAA 307 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + + +Q D + +DP RAG+ ++ + P RIVY+SCNP T ARD++ Sbjct: 308 DAGAYMREQAEQGRSVDVLFMDPPRAGSTPDFLKAACSISPKRIVYISCNPTTQARDAKY 367 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L++ GY I L +DMFPHT H+E ++ SR Sbjct: 368 LIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398 >UniRef50_D2BIA5 RNA methyltransferase, TrmA family n=5 Tax=Dehalococcoides RepID=D2BIA5_DEHSV Length = 400 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 99/399 (24%), Positives = 179/399 (44%), Gaps = 51/399 (12%) Query: 41 IPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQ 100 + G + E ++ + K A+V++ + S +R P CP+FG C GC QH + Q Sbjct: 41 VFGGIKGETVDIRLFVHKAGRGYAQVIKVHTPSSDRIAPSCPYFGDCTGCTFQHINYQHQ 100 Query: 101 QRSKSAALARLMKH------DVSEVIA-DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS 153 K ++ + ++S VI D GYR ARLS+ + +GF S Sbjct: 101 LNLKHRIVSAEFEKAGLHSLNISPVIPSDDKGGYRNHARLSIYHAN------LGFVNRFS 154 Query: 154 SDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSS 213 + V QC I+ P + +L +++ G + + A++ ++ L Sbjct: 155 RRHIQVDQCQIMNPGINRVLGELQGKCGE------TRQLSIRHASNKDSYLI--QPKLIK 206 Query: 214 ADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQ 272 AD + SG+ ++D G S F QVN + Sbjct: 207 AD-----------------------INIESGQKEYHDLLMGHDFCISAASFFQVNNPQAK 243 Query: 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG 332 KM E L++ + ++D + G+G F + L+ V+ +E A V+ + N ++G Sbjct: 244 KMAKLIKEHLNLNGSETLVDAYAGVGTFAVLLSPDCKRVIAIEESAAAVKDAKLN--ISG 301 Query: 333 LQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNP 391 + N+ E+ + + + D ++LDP+R+GA V+ I + P +VYV+C+P Sbjct: 302 IDNIELIQSKTEDVINRF---EEQMDALILDPSRSGAHPSVLATICQNPPRNLVYVACDP 358 Query: 392 ATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 ++LARD + LL + ++++ +DMFP T H+E++ L Sbjct: 359 SSLARDLKILLAGPFELSQVIPVDMFPQTYHVETLALLK 397 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 515 e-144 UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=13... 487 e-136 UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethi... 478 e-133 UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacil... 470 e-131 UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clost... 469 e-131 UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81... 469 e-130 UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 ... 465 e-129 UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1... 465 e-129 UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n... 460 e-128 UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clost... 458 e-127 UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veill... 456 e-127 UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=... 455 e-126 UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolum... 451 e-125 UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=2... 451 e-125 UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14... 450 e-125 UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammon... 450 e-125 UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10... 448 e-124 UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein ... 448 e-124 UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Therm... 448 e-124 UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36... 447 e-124 UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bact... 445 e-123 UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonel... 441 e-122 UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdema... 440 e-122 UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacil... 440 e-122 UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n... 439 e-122 UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desul... 438 e-121 UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 437 e-121 UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=N... 436 e-121 UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marin... 435 e-120 UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 ... 435 e-120 UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 ... 435 e-120 UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halot... 435 e-120 UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacte... 434 e-120 UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicu... 434 e-120 UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostri... 433 e-120 UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=... 433 e-120 UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 ... 432 e-120 UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 431 e-119 UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natra... 431 e-119 UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desul... 430 e-119 UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 430 e-119 UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 429 e-119 UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=... 429 e-118 UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desul... 428 e-118 UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopisciu... 428 e-118 UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=... 428 e-118 UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 426 e-117 UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostri... 425 e-117 UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 423 e-117 UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachl... 422 e-116 UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moore... 422 e-116 UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 421 e-116 UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus Rep... 421 e-116 UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 420 e-116 UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 420 e-116 UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 ... 419 e-115 UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chrom... 419 e-115 UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 418 e-115 UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 ... 417 e-115 UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desul... 417 e-115 UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 417 e-115 UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geoba... 416 e-115 UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae Rep... 416 e-115 UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22... 416 e-115 UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=... 416 e-114 UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 414 e-114 UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=... 414 e-114 UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotom... 414 e-114 UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostri... 414 e-114 UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58... 413 e-114 UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(... 413 e-114 UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzym... 413 e-114 UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25... 411 e-113 UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 411 e-113 UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=1... 411 e-113 UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Ta... 411 e-113 UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19... 411 e-113 UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococ... 409 e-113 UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1... 408 e-112 UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteri... 408 e-112 UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase ... 408 e-112 UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12... 407 e-112 UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=g... 407 e-112 UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Therm... 406 e-112 UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 406 e-112 UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desul... 406 e-112 UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacil... 405 e-111 UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacte... 405 e-111 UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntr... 405 e-111 UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptoco... 404 e-111 UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 ... 404 e-111 UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candi... 403 e-111 UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 403 e-111 UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 403 e-111 UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 403 e-111 UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodo... 403 e-111 UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenel... 402 e-110 UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyro... 399 e-110 UniRef50_B2UQE8 RNA methyltransferase, TrmA family n=4 Tax=Verru... 398 e-109 UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 T... 398 e-109 UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desul... 398 e-109 UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=... 397 e-109 UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gamma... 396 e-109 UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicy... 396 e-109 UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 396 e-109 UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18... 396 e-108 UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingell... 396 e-108 UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillac... 396 e-108 UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bactero... 395 e-108 UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 394 e-108 UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=... 394 e-108 UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=B... 394 e-108 UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdema... 393 e-108 UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protei... 392 e-107 UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 391 e-107 UniRef50_A0LDR0 RNA methyltransferase, TrmA family n=1 Tax=Magne... 391 e-107 UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine ... 391 e-107 UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=D... 391 e-107 UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 390 e-107 UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=... 389 e-107 UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 ... 388 e-106 UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n... 388 e-106 UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spiro... 388 e-106 UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacte... 388 e-106 UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synec... 387 e-106 UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter... 387 e-106 UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1... 386 e-106 UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desul... 386 e-105 UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desul... 384 e-105 UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comam... 384 e-105 UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 ... 384 e-105 UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Rosebur... 384 e-105 UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsoni... 383 e-105 UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclass... 383 e-105 UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 383 e-105 UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=... 383 e-105 UniRef50_A1VQF1 23S rRNA (uracil-5-)-methyltransferase rumA n=8 ... 383 e-104 UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 382 e-104 UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 382 e-104 UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacte... 382 e-104 UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bact... 382 e-104 UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=... 382 e-104 UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 382 e-104 UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embr... 381 e-104 UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 T... 381 e-104 UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=... 381 e-104 UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 381 e-104 UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevot... 380 e-104 UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=unculture... 379 e-103 UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 379 e-103 UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Vario... 379 e-103 UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 378 e-103 UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 378 e-103 UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Achol... 377 e-103 UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Therm... 377 e-103 UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 376 e-103 UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 376 e-103 UniRef50_B6BUM1 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=B... 374 e-102 UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA ... 374 e-102 UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA ... 372 e-101 UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA ... 372 e-101 UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protei... 372 e-101 UniRef50_C8NCJ6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 372 e-101 UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdema... 371 e-101 UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n... 371 e-101 UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Enta... 370 e-101 UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Corio... 370 e-101 UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfo... 370 e-101 UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 T... 369 e-101 UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 369 e-100 UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpe... 369 e-100 UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=... 368 e-100 UniRef50_A3WPS3 SAM-dependent methyltransferase n=1 Tax=Idiomari... 368 e-100 UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=De... 368 e-100 UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desul... 368 e-100 UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=S... 368 e-100 UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firm... 367 e-100 UniRef50_Q1QX18 RNA methyltransferase, TrmA family n=1 Tax=Chrom... 367 e-100 UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1... 366 e-100 UniRef50_A4BBK4 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=R... 366 1e-99 UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petro... 365 2e-99 UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna R... 364 4e-99 UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collins... 363 6e-99 UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clost... 362 1e-98 UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase Ru... 362 2e-98 UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=1... 362 2e-98 UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimo... 361 4e-98 UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydro... 360 5e-98 UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=... 360 7e-98 UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=P... 360 7e-98 UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcu... 359 8e-98 UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacte... 359 1e-97 UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2... 359 1e-97 UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitu... 357 4e-97 UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachl... 357 4e-97 UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4R... 357 4e-97 UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmo... 357 5e-97 UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Rosei... 357 5e-97 UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 356 7e-97 UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chlor... 356 8e-97 UniRef50_C1F225 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=A... 356 1e-96 UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1... 355 2e-96 UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusob... 354 4e-96 UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protei... 354 5e-96 UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavo... 353 6e-96 UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzym... 353 8e-96 UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCM... 351 2e-95 UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 350 7e-95 UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusob... 347 3e-94 UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 ... 347 4e-94 UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepI... 347 4e-94 UniRef50_Q1D5V4 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 345 2e-93 UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus ... 344 4e-93 UniRef50_Q4PA00 Putative uncharacterized protein n=1 Tax=Ustilag... 343 7e-93 UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinel... 343 9e-93 UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Achol... 342 1e-92 UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaer... 342 2e-92 UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzym... 342 2e-92 UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostri... 342 2e-92 UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteri... 341 2e-92 UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaer... 341 3e-92 UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopo... 341 4e-92 UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 T... 339 1e-91 UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 339 1e-91 UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n... 339 2e-91 UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacte... 339 2e-91 UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacte... 338 2e-91 UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6... 337 4e-91 UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5E... 336 9e-91 UniRef50_O54099 Uncharacterized RNA methyltransferase SCO5901 n=... 336 1e-90 UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotro... 334 4e-90 UniRef50_B8C918 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 334 4e-90 UniRef50_A6G9S9 RNA methyltransferase n=1 Tax=Plesiocystis pacif... 332 1e-89 UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1... 332 2e-89 UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780... 331 3e-89 UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna R... 331 3e-89 UniRef50_A6GQJ2 23S rRNA (Uracil-5-)-methyltransferase (Fragment... 331 3e-89 UniRef50_Q09833 Uncharacterized RNA methyltransferase C4G8.07c n... 330 5e-89 UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 329 1e-88 UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimo... 329 2e-88 UniRef50_UPI0000E0E6C1 23S rRNA (uracil-5)-methyltransferase, re... 328 2e-88 UniRef50_A6DJC1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lenti... 326 1e-87 UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichi... 326 1e-87 UniRef50_C2EN78 TrmA family tRNA (Uracil-5-)-methyltransferase n... 326 1e-87 UniRef50_Q6MGU3 Uncharacterized RNA methyltransferase Bd3828 n=1... 325 2e-87 UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycop... 324 3e-87 UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bactero... 324 3e-87 UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8... 324 5e-87 UniRef50_B9R3Z1 tRNA (Uracil-5-)-methyltransferase superfamily n... 323 6e-87 UniRef50_B9XDW9 RNA methyltransferase, TrmA family n=1 Tax=bacte... 323 6e-87 Sequences not found previously or not previously below threshold: >UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Enterobacteriaceae RepID=RUMA_ENTS8 Length = 432 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 326/431 (75%), Positives = 369/431 (85%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MAQFYSAKRR TTR+IITV+ + LD+FGQGVARH+GK LFI GLLP E AEV ++EDKKQ Sbjct: 1 MAQFYSAKRRVTTREIITVTTDGLDAFGQGVARHHGKALFIAGLLPGERAEVVLSEDKKQ 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI 120 +AR V +RLS+SPERETPRCPHFGVCGGCQQQHASV LQQRSK+ AL R+MK +V EVI Sbjct: 61 FARGDVKKRLSESPERETPRCPHFGVCGGCQQQHASVALQQRSKAQALCRMMKREVDEVI 120 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + WGYRRRARLSLN+ P+ LQMGFRKAGS+D+VDV +CP+L P+LEALLPK+R CL Sbjct: 121 SGPAWGYRRRARLSLNFTPRKPGLQMGFRKAGSNDLVDVHRCPVLVPRLEALLPKLRDCL 180 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 SL +RHLGHVELV TSG LM+LRH PLS+ADREKLE FSHSEG+ LYLAP S+ LE Sbjct: 181 SSLDGVRHLGHVELVDVTSGPLMVLRHLKPLSAADREKLECFSHSEGVALYLAPQSDTLE 240 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 ++GEMPWY+S+GLRLTFSPRDFIQVN VNQ+MVARALEWL++QP +RVLDLFCGMGNF Sbjct: 241 HLNGEMPWYESDGLRLTFSPRDFIQVNDAVNQQMVARALEWLEIQPGERVLDLFCGMGNF 300 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 TLPLA +A SVVGVEGV ALVEKG NA LN L+NVTF+ NLEEDVT+QPWA+ GFDKV Sbjct: 301 TLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQPWAQQGFDKV 360 Query: 361 LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 LLDPARAGAAGVMQ I+KL+P R+VYVSCNPATL RDSE LL AGY RLAMLDMFPHT Sbjct: 361 LLDPARAGAAGVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHT 420 Query: 421 GHLESMVLFSR 431 GHLESM LF R Sbjct: 421 GHLESMALFER 431 >UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=131 Tax=Enterobacteriaceae RepID=RUMA_PECCP Length = 449 Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 273/440 (62%), Positives = 336/440 (76%), Gaps = 11/440 (2%) Query: 1 MAQFYSAKRRTTTRQII-----TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVT 55 MAQFYS RR TTR+ I TV+V LD FGQGVARH GKT+F+ G+LP E AEV +T Sbjct: 1 MAQFYSPNRRVTTRKAIPAKNLTVTVTSLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLT 60 Query: 56 EDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD 115 EDK+Q++ AK+ R L+ SP+R P+CPHF CGGCQQQHA + LQQ SK+AAL RLM + Sbjct: 61 EDKRQFSHAKLKRLLTHSPQRVEPQCPHFTRCGGCQQQHADITLQQSSKTAALMRLMTRE 120 Query: 116 VSEVIADV------PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQL 169 + D P+ YRRRARL+L + K Q+L MG+R++ S D+VD+K CP+L P+L Sbjct: 121 TGAELPDASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPEL 180 Query: 170 EALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD 229 EALL +R CL L+A++ LGHVELVQA +G L++LRH PL AD + L F+ +G+ Sbjct: 181 EALLQPLRDCLSRLKAVKRLGHVELVQAENGPLLVLRHLDPLHPADEQALRDFAEQQGVS 240 Query: 230 LYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 +YLAPD++ L + G+ P Y GL L FSPRDFIQVN VNQ+MVA+AL WLDVQP+DR Sbjct: 241 VYLAPDADSLTCLHGDEPVYLVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDR 300 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 +LDLFCGMGNFTLPLA +AASVVGVEGV ALVEKG++NAR N L NVTF+H+NLE+DVT+ Sbjct: 301 ILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQ 360 Query: 350 QPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 QPW GFDK+LLDPARAGAAGVM+QI +L P R+VYVSCN TLARDS+ LL AG+T+ Sbjct: 361 QPWVAQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLV 420 Query: 410 RLAMLDMFPHTGHLESMVLF 429 +AMLDMFPHTGHLESM LF Sbjct: 421 NVAMLDMFPHTGHLESMALF 440 >UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCA6_9FIRM Length = 455 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 133/456 (29%), Positives = 212/456 (46%), Gaps = 31/456 (6%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 K Q + + ++ L+ G+GV R+ G T+F+P +P + V +K YARA Sbjct: 2 KKKPPVKKGQQVELEIHSLNHDGEGVGRYQGFTIFVPDAVPGDTVNAKVISVQKSYARAL 61 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIA---- 121 + ++ SP R P C H CGGCQ QH + Q + K ++ +K I Sbjct: 62 LQSVITSSPTRIAPSCEHAAQCGGCQLQHLQYEEQLKLKQNIVSDTLKRIGGIDIPVLAT 121 Query: 122 ---DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 PW YR +A++ + + ++ GF + S +I+D+K C I P + ++ VR Sbjct: 122 MGMQDPWRYRNKAQVPVG--LENGTVRAGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRN 179 Query: 179 CLGS-----LQAMRHLGHVELVQATS----GTLMILRHTAPLSSADREKLER-----FSH 224 L + H G V + A + +++ T ++++ + + Sbjct: 180 ILQQLSVPVYREREHKGLVRHILARTSFTTEEVLVAIVTNGRQLPKKQEVVQQLKDSIPN 239 Query: 225 SEGLDLYLAPD-------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 G+ + +E L + L S R F QVN + + + Sbjct: 240 LCGIVQNINTRKGNTILGNEELTLLGRPWLREKLGNLHFHVSARSFFQVNPLQTEVLYNK 299 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 ALE+ ++ + V DL+CG+G +L LA +AA VVGVE V A V ++NA +N ++N Sbjct: 300 ALEYANLSGTETVFDLYCGIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAE 359 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLAR 396 F+ E V + D V++DP R G ++ I + P RIVYVSCNPATLAR Sbjct: 360 FHTGTAETVVPRLFKQGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLAR 419 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 D + L + GY +DMFPHT H+E++VL R Sbjct: 420 DLKYLQQNGYNPIEAQPVDMFPHTSHVETVVLLERK 455 >UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacilli RepID=C6CV49_PAESJ Length = 465 Score = 470 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 129/462 (27%), Positives = 204/462 (44%), Gaps = 39/462 (8%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + V + L G+GV R +G TLFI G LP E V + KK Y A++ Sbjct: 4 PVQKNDEVVVDIIGLTHDGEGVGRADGYTLFIQGALPGERVRAKVMKVKKAYGYARLQEL 63 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADV------ 123 L S +R P C + CGGCQ QH Q K + ++ IA Sbjct: 64 LDASADRVVPVCGIYDKCGGCQLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASG 123 Query: 124 -----------PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEAL 172 PW YR +A++ + +L GF GS I+D QC I + + + Sbjct: 124 ITVHPTVGMNDPWRYRNKAQVPVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEV 183 Query: 173 LPKVRAC-----LGSLQAMRHLGHVELVQATSG----TLMILRHTA----PLSSADREKL 219 + V+A + + G + V +G +M++ T P + E++ Sbjct: 184 VRIVKAIGRELGVSAYDEESGKGLLRHVMTRTGFVSGEIMVVLVTNGRKLPQAELWVERI 243 Query: 220 -ERFSHSEGLDLYLAPD------SEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVN 271 + + + + + + G YD +G+R S R F QVN Sbjct: 244 RAALPEVKSIVQNVNTRDTNVIFGDETKVLWGSEVIYDELDGIRFAISARSFYQVNPSQT 303 Query: 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLN 331 ++ A+++ + ++ V+D +CG+G +L LA +A V GVE VP +E ++NA LN Sbjct: 304 IELYRTAVDYAQLTGKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELN 363 Query: 332 GLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCN 390 G+ N +F E + + D +++DP R G ++ I+K++P R+VYVSCN Sbjct: 364 GISNASFEAGPAEVVIPRWREEGIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCN 423 Query: 391 PATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 P+TLARD L GY + +DMFP T H+E +V R Sbjct: 424 PSTLARDLRTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVRK 465 >UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clostridiales RepID=D2RLZ0_ACIFE Length = 458 Score = 469 bits (1208), Expect = e-131, Method: Composition-based stats. Identities = 132/455 (29%), Positives = 213/455 (46%), Gaps = 31/455 (6%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 K ++ I +++ L S G+GV + +G T F+PG LP E + VT KK Y +A+ Sbjct: 3 ENKIPFKLKENIELTITGLGSSGEGVGKVSGFTFFVPGALPGERIQAQVTLLKKSYGQAR 62 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------S 117 +++ L SP+R P CP + CGGCQ QH S Q K + M+ Sbjct: 63 LLKLLVPSPDRVKPPCPVYAQCGGCQLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQE 122 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + A+ PW YR + ++ + L +G G+ ++DVK C I ++ VR Sbjct: 123 TLGAEDPWHYRNKMQVP-AAQGRNHTLAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVR 181 Query: 178 ACLGSLQAMR-----HLGHVELVQAT----SGTLMILRHTAPLSSADREKL-----ERFS 223 + + + G V + +G +M + T + L + Sbjct: 182 SWMEKYRIPALEEDARRGIVRHIMGRVGVQTGEVMAVLVTNEPQVPHLKDLTALLRQEIP 241 Query: 224 HSEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVA 276 L L + + G +D G T SP F QVN +K+ Sbjct: 242 GFTTLVQNLNTRHTNVIMGPKNKVIWGPGVIHDRLGKFTFTISPHSFFQVNTLQAEKLYE 301 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 AL++ + +++V+D +CG G TL LA +A +G+E V + +QNAR N + NV Sbjct: 302 TALQYAALTGKEKVIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNV 361 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLA 395 F + +++ + + D V+LDP RAG V++ I K+ P R+VYVSCNPA+LA Sbjct: 362 DFLCGDAAKEMPELVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLA 421 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 RD+ L G+ + ++ +DMFPHT H+E++ L + Sbjct: 422 RDAAILRDKGFVVRKVQPVDMFPHTSHVETVCLLT 456 >UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81 Tax=Gammaproteobacteria RepID=RUMA_VIBSL Length = 442 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 214/441 (48%), Positives = 277/441 (62%), Gaps = 10/441 (2%) Query: 1 MAQFYSAKRRTTTRQIIT-VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59 MA+F+ K++T V V +D G G+A K +FI G LP E + +TE K Sbjct: 1 MARFFQPKKKTQLETKHQSVLVERMDHNGAGIAYQKNKPVFIDGALPGEKVVIQLTESKS 60 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH----- 114 +++RAK+++ L S R P C HF CGGC QH Q KS +L LM Sbjct: 61 KFSRAKLIKLLQPSELRLKPFCKHFNQCGGCHLQHLGYSSQVEHKSQSLTHLMSKYQTAN 120 Query: 115 -DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 +V+ I GYRRRAR+SL KTQ LQ GFRK S I ++ C +L P+L LL Sbjct: 121 TEVALPIVGDESGYRRRARISLFVDKKTQLLQFGFRKKQSKQIENITDCAVLDPRLNVLL 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERF---SHSEGLDL 230 PK+++ L + ++ LGHVELV +G +M+LRH PL D + L + EG L Sbjct: 181 PKLKSLLNTFSSLTSLGHVELVLGDTGPVMVLRHLKPLVEKDEQALMTLMTLAKEEGATL 240 Query: 231 YLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRV 290 Y P+++ L + G+ P Y G+ L F P FIQVN VNQ+MVA+A+EWL+ Q ++RV Sbjct: 241 YSMPETDKLVRLVGDAPSYSETGVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADERV 300 Query: 291 LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 LDLFCG+GNF+LP+A Q+A VVGVEGV +V++ NA LN L N FY NLEED++ Q Sbjct: 301 LDLFCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLSSQ 360 Query: 351 PWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIAR 410 WAK FDKVLLDPARAGA+G++ QI L R+VYVSCNPATLARDSE+L K GY +A+ Sbjct: 361 LWAKEKFDKVLLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAK 420 Query: 411 LAMLDMFPHTGHLESMVLFSR 431 L MLDMFPHT HLESM LF + Sbjct: 421 LGMLDMFPHTSHLESMALFIK 441 >UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 Tax=Shewanella RepID=RUMA_SHEPA Length = 445 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 199/443 (44%), Positives = 281/443 (63%), Gaps = 14/443 (3%) Query: 1 MAQFYSAKRRTTT--RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58 MAQF+ AK + +++ V LD G G+A H+GK +FI G LP E V +TE K Sbjct: 1 MAQFFKAKPNRSKQLSSKLSLKVTQLDHLGAGIAHHDGKIVFINGALPDETVSVQLTEQK 60 Query: 59 KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--- 115 K+++R K+++ S ER TP CPHF CGGC QH ++ Q++ K+ L L+ Sbjct: 61 KKFSRGKLLKIEKRSTERVTPPCPHFDKCGGCDLQHLDIEAQRKHKANTLVDLVNKFAQT 120 Query: 116 ----VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 V ++ W YRRRARL+ + T+ + +GFR + SSD+V+++ C +LA L A Sbjct: 121 QASEVCAPLSGDAWHYRRRARLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSA 180 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L+P + L L + LGHVEL QA +G ++LR T LS D+ +L F++ + + Sbjct: 181 LIPDLAFMLNQLSGKKALGHVELTQADNGNFVVLRVTKVLSDKDKARLVEFANKHEVIVL 240 Query: 232 LAPDSEILETV--SGEMPWYDSNG--LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 L D E + +GE P+Y +G ++L FSP +FIQVN VNQ MV++A+EWL + Sbjct: 241 LQDDDAQCEHLNGAGEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAG 300 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 +RVLDLFCG+GNF+LPLA A V+GVEGV A+VE+ + NA+ +GL V FYH +L D+ Sbjct: 301 ERVLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLSADL 360 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 +K+PW DK+L+DPARAGA MQ + KL+P +VYVSCNPA+LARDSE +LK GY Sbjct: 361 SKEPWLG-KVDKMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQ 419 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 + ++ ++DMFP T HLESM LF Sbjct: 420 LKKIGLIDMFPQTHHLESMALFE 442 >UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1776 n=56 Tax=Firmicutes RepID=Y1776_LISMF Length = 453 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 128/447 (28%), Positives = 207/447 (46%), Gaps = 30/447 (6%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 Q I +++ DL G GV + +G LFIP LP E + + K Y A++ Sbjct: 6 LKKNQSIELTIEDLTHDGSGVGKIDGYPLFIPNTLPGEKVTAKIIKLNKNYGFARMENIE 65 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVI-ADV 123 + S +R P C + CGGC QH S D Q K + MK +V E + + Sbjct: 66 TVSADRVEPPCAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMEN 125 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL--- 180 PW YR ++++ + ++ +L GF + S I+D+ C I Q + + K R L Sbjct: 126 PWRYRNKSQVPVGFV--NGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKY 183 Query: 181 --GSLQAMRHLGHVELVQAT----SGTLMILRHTA----PLSSADREKLERFSHSEGLDL 230 G + + +G LMI+ T P +L + Sbjct: 184 GTEPYDEQTGKGDIRHIMTRFAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQ 243 Query: 231 YLAPD------SEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + P + +T+ G+ D +G+R S R F QVN + + +A++ + Sbjct: 244 NINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDAAE 303 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + E+ V+D +CG+G+ +L LA +A V GVE V ++ + NA LN L N TF Sbjct: 304 LTGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKA 363 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 EE + A D +++DP R G +++ I+ ++P ++VYVSCNP TLARD + L Sbjct: 364 EEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILT 423 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLF 429 GY ++ +DMFP T H+E++ + Sbjct: 424 DGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n=176 Tax=Firmicutes RepID=Y363_BACC1 Length = 460 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 131/458 (28%), Positives = 223/458 (48%), Gaps = 32/458 (6%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + I V DL G GVA+ G +F+ LP E A++ + + KK +A + Sbjct: 4 KMTPPVEKNEFIDVVFEDLTHDGAGVAKVKGYPIFVKNGLPGEEAQIKIIKVKKNFAFGR 63 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------S 117 +++ ++SP R+ CP + CGGCQ QH + + Q ++K + +M+ Sbjct: 64 LMKLHTESPYRKDAECPVYNQCGGCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHP 123 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + PW YR +A++ + + L GF + G+ DI++++ C I A + + L+ +V+ Sbjct: 124 VLGMKNPWVYRNKAQVPIG--EREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVK 181 Query: 178 AC-----LGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKLER-----FS 223 + + R+ G + V A +G +M++ T +++ + F Sbjct: 182 RICEKHGISAYNEERNKGTLRHVMARYGQVTGEIMLVFITRTAELPNKKAIIEEIATKFP 241 Query: 224 HSEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVA 276 + + + P + + G YD G ++ S R F QVN + + Sbjct: 242 EVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYD 301 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 + LE+ + + V+D +CG+G+ +L LA +A V GVE VP +E ++NA LN + N Sbjct: 302 KTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNA 361 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLA 395 F E + K D +++DP R G ++ II ++P R+VYVSCNPATLA Sbjct: 362 EFGVGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLA 421 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 RD + L + GY + +DMFPHT H+E +VL SRV+ Sbjct: 422 RDLKVLEEGGYKTQEVQPVDMFPHTTHVECVVLMSRVE 459 >UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clostridium RepID=A3DG93_CLOTH Length = 453 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 117/452 (25%), Positives = 207/452 (45%), Gaps = 32/452 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 ++ T+ + + GQGV R + T+F+ G + E E+ + + KK YA K+++ L Sbjct: 4 VKKNEVYTIDITGMTHEGQGVGRIDNFTVFVDGPVEGEKVEIKIIKVKKSYAIGKLLQVL 63 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEVIAD 122 S +R P CP + CGGC QH + + R K+ + ++ V + Sbjct: 64 EPSSDRTEPFCPSYKRCGGCSLQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGME 123 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P YR +A+ + ++ GF S +I+D C I + + V+ + Sbjct: 124 QPVNYRNKAQYPIGRYKDG--IRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEK 181 Query: 183 -----LQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKL-----ERFSHSEGL 228 + G V + +G +M++ + ++KL + + + Sbjct: 182 NNISTYDEITGEGLVRHIMTRVGFKTGEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSV 241 Query: 229 DLYLAPDSEILE------TVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEW 281 L + + V G D G + SP F QVN + + +AL++ Sbjct: 242 VLNVNTKRTNVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDY 301 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 + ++ V DL+CG+G +L L+ +A + GVE V A V+ +NA++NG++N F Sbjct: 302 AQLTGKETVFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVG 361 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEA 400 E+ + + D V++DP R G V++ ++ ++P RIVYVSCNPATLARD + Sbjct: 362 EAEKVIPEMYEKGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKY 421 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 L + G+ + + +DMFP T H+E + L + Sbjct: 422 LAEGGFEVREVQPVDMFPWTYHVECVALIEKK 453 >UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veillonellaceae RepID=D1BLZ0_VEIPT Length = 457 Score = 456 bits (1173), Expect = e-127, Method: Composition-based stats. Identities = 130/456 (28%), Positives = 203/456 (44%), Gaps = 30/456 (6%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + + V+++ + S G+GV R T+F+P LP E +V++T KK YA + Sbjct: 1 MLNAPVKLGEEVLVTIHGIGSSGEGVGRVEDFTVFVPFTLPGETVKVSITMVKKTYATGR 60 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------S 117 ++ ++ +P R P C +G CGGCQ QH + + Q K+ + +++ Sbjct: 61 LLEIVTIAPNRIDPHCDLYGFCGGCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKP 120 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + PW YR + ++ + +QMGF GS DIV CPI + Sbjct: 121 TLGPKNPWAYRNKMQMPVGGT--KGDIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACY 178 Query: 178 ACLGSLQAMRH--------LGHVELVQATSGTLMILRHTAPLSSADREKLERF----SHS 225 + L HV SG ++IL + +E+ Sbjct: 179 QIAKEFDIEPYDEHTGKGVLRHVIGRIGQSGWMIILVTATEHLPHQEKWVEKLTERVPQV 238 Query: 226 EGLDLYLAPD------SEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARA 278 E + + + G+ D LR T SP F QVN + +A Sbjct: 239 ETIVHNVNGKRTNVILGPKNSVLYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQA 298 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 L + D++ + V+D +CG G +L LA +A V+G+E V + ++NAR NG N F Sbjct: 299 LAYADLKGTEIVIDAYCGTGTISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEF 358 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARD 397 + ++ K A D ++ DP RAG V+ +EP RIVYVSCNPAT+ARD Sbjct: 359 IVADAAVEIPKLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARD 418 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 E L GY + + +DMFP T H+E++ L +R K Sbjct: 419 IEILTHYGYELKEVQPVDMFPMTAHVEAVALLTRSK 454 >UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=64 Tax=Staphylococcus RepID=Y1582_STAES Length = 456 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 121/453 (26%), Positives = 203/453 (44%), Gaps = 32/453 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 ++ T V DL G GV + + +FIP L E + + + KK +A K++ + Sbjct: 4 IKKNEVKTGKVIDLTHEGHGVVKVDRYPIFIPNALIDEEIKFKLIKVKKNFAIGKLIEVI 63 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS--------EVIAD 122 S+S +R TP C ++ CGGCQ QH + Q K + L + Sbjct: 64 SESDDRVTPPCIYYAKCGGCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMV 123 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 PW YR ++++ + Q+ MGF + S DI+D+ C I Q + ++ +V+ L Sbjct: 124 NPWRYRNKSQIPVGQSNSN-QVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNE 182 Query: 183 -----LQAMRHLGHVELVQATSG----TLMILRHTAPLSSADREKL-----ERFSHSEGL 228 G + + +G +M++ T + E L + F + + Sbjct: 183 LNISIYNEKTKTGLIRHLVVRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSI 242 Query: 229 DLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEW 281 + T+ G+ D + S F Q+N+ +K+ +AL + Sbjct: 243 KQNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNY 302 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 + ++ VLD +CG+G L +A A V GVE VP ++ + NA N L+N TF Sbjct: 303 AQLTGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECG 362 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEA 400 E+ + D V++DP R G + ++KL P RIVY+SCNP+T RD++ Sbjct: 363 KAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQI 422 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L + Y + + +DMFP T H+E++ LF R + Sbjct: 423 LAEQ-YELVEITPVDMFPQTTHIETVALFVRKE 454 >UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBR5_TOLAT Length = 440 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 175/441 (39%), Positives = 243/441 (55%), Gaps = 10/441 (2%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M QF+ K + Q + +++++LD GV R+ GK F+ G+LP E V +TE KKQ Sbjct: 1 MVQFFQPKPKALPTQAVEITIDNLDHHLTGVGRYQGKACFVEGVLPGEKVSVQITEQKKQ 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI 120 YA A++ + + S +R P CP F CGGC Q +Q ++K + RL + + Sbjct: 61 YAHARLRQVIEPSADRCEPFCPAFKQCGGCNAQMMPQAMQCQAKQQGVQRLFRQLAKIDL 120 Query: 121 -------ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + P YRR RL++ Y + + +GFR+ S +V++ CP+L L AL+ Sbjct: 121 PAPLWIESSAPQAYRRVCRLAVKYDKNKRCVLVGFRQKQSQALVEINSCPVLTAALSALI 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 +R + L + R +GH+EL + SG M+LRH D+E L F+ LYL Sbjct: 181 VPLRTLINELSSARDVGHIELYETESGLAMLLRHNGRPPVKDKELLLAFALQHDCALYLQ 240 Query: 234 PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 + +Y +GLRL F P DF+QVN VNQ++V EWL D VLDL Sbjct: 241 TTGYPEPLADVKPSFYQLDGLRLYFQPGDFLQVNPQVNQRLVNYVREWLAPTATDNVLDL 300 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV--TKQP 351 FCG+GNFTLPLA +AASV G+EGV +V++ NA N L N F+ +L + Sbjct: 301 FCGIGNFTLPLAREAASVTGIEGVDEMVQRATHNAEQNQLVNTGFHRADLTKMAEYANAG 360 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 W + +D VLLDP R GA VM + K RIVYVSCNP T ARD LL+ GYT+ + Sbjct: 361 WQQQCYDLVLLDPGRTGAEAVMPWLAKSGARRIVYVSCNPVTAARDCA-LLQPGYTLKQW 419 Query: 412 AMLDMFPHTGHLESMVLFSRV 432 +LDMFPHTGH+ES+ LF R Sbjct: 420 GLLDMFPHTGHVESLFLFERK 440 >UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=23 Tax=Firmicutes RepID=Y768_OCEIH Length = 459 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 133/461 (28%), Positives = 212/461 (45%), Gaps = 38/461 (8%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MA K +I T++ DL G GVA+ G LF+P +LP E A+V V + K Sbjct: 1 MA---KTKPPVNKNEIYTLTFEDLTHEGNGVAKIEGYPLFVPEVLPDEQAKVKVVKVNKN 57 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV---- 116 + K++ S R P C CGGCQ QH S DLQ + K + +MK Sbjct: 58 FGFGKLLELTKTSSHRVEPTCHVH--CGGCQLQHMSYDLQLQMKQGQVHNVMKKVAHLDQ 115 Query: 117 ----SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIV-DVKQCPILAPQLEA 171 + + P YR + ++ + K ++ +GF + S I+ + C I + Sbjct: 116 VPVHPILGMEEPSHYRNKVQIPVG--EKNGEVIVGFYQKRSHRILQNQDTCHIQDEAINE 173 Query: 172 LLPKVRAC-----LGSLQAMRHLGHVELVQATSG----TLMILRHTA-----PLSSADRE 217 +LP R + + H G + + G +MI+ T +E Sbjct: 174 VLPFTRQLMNKYGIQAYDEKSHRGQLRHIMVRVGHYTKDIMIVFVTKTSKFPEKDRIIKE 233 Query: 218 KLERFSHSEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGV 270 E+F + + + + + + GE YD G L SP+ F QVN Sbjct: 234 LTEQFPQVKSIVQNVNDQRTNVVLGKKTKVLWGENYIYDKIGDLTFAISPKSFFQVNPVQ 293 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 + + +ALE+ ++ +D V+D +CG+G+ +L LA +A V G+E VP +E + NA + Sbjct: 294 TKVLYDKALEYANIDKDDVVIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEI 353 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSC 389 NG+ NV F E+ + K D +++DP R G ++ +I ++P RIVYVSC Sbjct: 354 NGMNNVEFSVGQAEKVMPKWKEQGLDPDVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSC 413 Query: 390 NPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 NP+TLARD L G+ ++ +DMFP T H+E + + Sbjct: 414 NPSTLARDLRILEDGGFETKQVQPVDMFPSTNHVECVAELT 454 >UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14 Tax=Shewanella RepID=RUMA_SHEDO Length = 468 Score = 450 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 199/466 (42%), Positives = 277/466 (59%), Gaps = 37/466 (7%) Query: 1 MAQFYSAKRRTTT--RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58 MAQF+ K + ++++V LD G G+A+H GK +FIP LP E V +T+ K Sbjct: 1 MAQFFKEKANKSKQLSPKLSLNVTQLDHLGAGMAQHQGKVVFIPQALPGERVSVQLTDQK 60 Query: 59 KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-KHDVS 117 K +A+AK+++ SPER CPH+G CGGC QH ++D QQ K +L LM K S Sbjct: 61 KSFAKAKLIKIEQQSPERADASCPHYGHCGGCDLQHLALDAQQNHKQQSLNELMVKFSGS 120 Query: 118 EVIAD---------VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQ 168 VI PW YRRRARL+ + + L++GFR S IV +KQCP+LA Sbjct: 121 PVIDPQVQAAPLVSPPWHYRRRARLATYFNNNDKSLKLGFRALSSKQIVPIKQCPVLAEP 180 Query: 169 LEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL 228 L AL+ L L+A LGH+EL QA +GT +LR T L +AD L F+ ++G+ Sbjct: 181 LSALINPFSLLLARLKAKASLGHLELTQADNGTFAVLRVTKVLPAADIRALASFALTQGI 240 Query: 229 DLYLAPDSEILETVSGEMPWYDSNGLRL-------------------TFSPRDFIQVNAG 269 +L L DS L V P D ++ F+P +F+QVNA Sbjct: 241 NLLLQDDSGALTDVMTMAPAEDEGATQVEQSALTLPEYALSQGQVSCQFTPGNFVQVNAE 300 Query: 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA-----SVVGVEGVPALVEKG 324 VNQ+MV +A+ WLD+Q +RVLDLFCG+GNF+L LA + V+GVEGVP +V++ Sbjct: 301 VNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQA 360 Query: 325 QQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRI 384 ++NA+ N L N++FYH +L D++ + W DK+LLDPARAGA +Q + K++P ++ Sbjct: 361 RENAKRNNLANLSFYHADLSADLSNEKWLG-KIDKLLLDPARAGAFESLQWLQKMKPKKV 419 Query: 385 VYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 VYVSCNPA+LARDS LL GY + +L+M+DMFP T H+E+M LF Sbjct: 420 VYVSCNPASLARDSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALFE 465 >UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7X4_AMMDK Length = 436 Score = 450 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 137/438 (31%), Positives = 208/438 (47%), Gaps = 19/438 (4%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 Q I + + DL+ G+GV R +G +FIP LP E VTE KK YARA++ L Sbjct: 1 MQPGQQIVLEITDLNHAGEGVGRFSGLVVFIPFALPGERVRARVTEMKKSYARARLEEIL 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEVIAD 122 S S R P CP FG CGGCQ H + Q K+ + ++ + + Sbjct: 61 SPSSGRVLPPCPSFGSCGGCQLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGME 120 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI---VDVKQCPILAPQLEALLPKVRAC 179 PW YR + RL + + + ++ +G S I +D C IL QL AL + Sbjct: 121 NPWHYRNKVRLHVAW--EGRKPVLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGL 178 Query: 180 LGSLQAMRH---LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS 236 + M + L AT T+++L + S + ++ + + + + + Sbjct: 179 IKKHAEMLAGLTAVSLRLAAATGETMVVLEGASEHYSRWKRLVDELTAAVPVTTVVRVGA 238 Query: 237 E-ILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 E + GE D +GL S F QVN ++ + LE+ + +RV+D + Sbjct: 239 RGKEEVLYGEGHITDSLDGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGRERVIDAY 298 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 CG+G TL LA +AA V+G+E P V NA NGL +V+F EE + + + Sbjct: 299 CGVGTITLFLARKAAQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEVLPELLARE 358 Query: 355 NGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 FD V+LDP R G ++ +++ + R++YVSCNPATLARD L GY + + Sbjct: 359 GMFDLVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATLARDLGFLSAQGYRVQEVQP 418 Query: 414 LDMFPHTGHLESMVLFSR 431 +DMFPHT H+E + R Sbjct: 419 VDMFPHTYHVECVAYLCR 436 >UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10 Tax=Gammaproteobacteria RepID=RUMA_MARAV Length = 449 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 171/444 (38%), Positives = 248/444 (55%), Gaps = 18/444 (4%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 +R+ ++ + + L G+G+AR +GKT F+ G LP E + + ++ + Sbjct: 3 KRRRKVLPKEPVRCEIETLSHDGRGIARADGKTQFVDGALPGETVMAKMVRTRSRFDELR 62 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--------VS 117 L +P+R+ P C +CGGC QH S D Q R K L H V+ Sbjct: 63 TTEVLEAAPDRQQPPCEFADLCGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVA 122 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + + GYRR+ARL + Y+ + + +GFR+ +S + D+ +C +L P++ + +R Sbjct: 123 PMRSPDSLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLR 182 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS- 236 L + A + VE+ M+ R+ L DREKL F + L +YL P Sbjct: 183 ELLHGMAAFDRIAQVEVACGDDTAAMVFRNMDDLVPDDREKLIAFGQAHDLHIYLQPKGP 242 Query: 237 EILETVSGE---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + + + E D L + F P DF QVNAG+N+ MV RA+EWLDVQP Sbjct: 243 DTVHRIWPESGGRDDERLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQPG 302 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 +RVLDLFCG+GNFTLPLA + VVGVEG A+V +G++NARLN L NV F+ +L D Sbjct: 303 ERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADLHGDF 362 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 T Q WAK GFDK+L+DP R+GA + + + RIVYVSCNPATLARD+ +++ GY Sbjct: 363 TGQSWAKEGFDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYR 422 Query: 408 IARLAMLDMFPHTGHLESMVLFSR 431 + + ++DMFPHT H+ES+ LF R Sbjct: 423 LVQAGVMDMFPHTTHVESIALFER 446 >UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI04_EUBR3 Length = 493 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 119/492 (24%), Positives = 200/492 (40%), Gaps = 71/492 (14%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 I + + D+ + G+G+ ++G T F+ L + T+ KK Y A+V Sbjct: 1 MKKNDIFELEITDMGTDGEGIGHYDGMTFFVKDALIGDVITARATKLKKNYGYARVEEIK 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV------------SE 118 + S R P+C CGGCQ Q S + Q K+ + + Sbjct: 61 TPSTFRVEPQCELHKRCGGCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPP 120 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 V D P+ YR +A+ + Y + + GF + S +I+ V+ C + PQ + +L ++ Sbjct: 121 VGTDNPYRYRNKAQFPVGYD-RDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKE 179 Query: 179 CLGS-----LQAMRHLGHVELVQATSG----TLMILRHTAPLSSADR-----------EK 218 + H G V V G +M+ S + E+ Sbjct: 180 WMNECGITPYDENTHKGLVRHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCER 239 Query: 219 LERFSHSEGLDLYLAPDS------EILETVSGEMPWYDSN-------------GLRLTFS 259 L + + + ++ + + G D+ G+ S Sbjct: 240 LSKIDGMTSISYNINKENTNVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQIS 299 Query: 260 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 P+ F QVN +K+ + AL + + + V DL+CG+G +L L+ +A V GVE VP Sbjct: 300 PQSFYQVNPKQTEKLYSTALAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQ 359 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG------------------FDKVL 361 +E + NA+LNG+ N F+ E+ + + D ++ Sbjct: 360 AIEDAKNNAKLNGITNAQFFVGKAEDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIV 419 Query: 362 LDPARAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 +DP R G + ++ + P RIVYVSC+ ATLARD + L + Y + + D F HT Sbjct: 420 VDPPRKGCDEKCLDTMLAMSPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHT 479 Query: 421 GHLESMVLFSRV 432 H+ES+ L RV Sbjct: 480 THVESICLLERV 491 >UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDX4_CLOTS Length = 452 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 118/453 (26%), Positives = 200/453 (44%), Gaps = 31/453 (6%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 + + ++++ GQGV R +G +F+ G L E + E K Y A V + Sbjct: 2 QNINIGDKYELYIDNMAHEGQGVGRLDGIAVFVRGALKGERVLAKIDEKHKNYLNAHVEK 61 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHD---VSEVIA 121 L S ER P+C + G CGGC QH S Q K L+R+ K + + Sbjct: 62 ILLPSQERIMPKCIYAGKCGGCTLQHLSYKGQLEFKKQVVDDSLSRIGKINTIVYDTIGM 121 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 D P YR +A + + ++ GF + S +I+ + C I + + VR Sbjct: 122 DNPLYYRDKAEYPVG--IEDGNIKSGFYASKSHNIIAIDSCMIQSDYSIEAMKTVREWAN 179 Query: 182 SL-----QAMRHLGHVELVQATSG----TLMILRHTAPLSSADREKL-----ERFSHSEG 227 + G + + G +M++ + +++L + + Sbjct: 180 NYKISIFDEKSGNGLLRYIITKVGFSTKEVMVILVINGIDIPYKDELINTLKKNIKELKS 239 Query: 228 LDLYLAPDSEILE------TVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALE 280 + L + L + G+ D G + SP F QVN + + +ALE Sbjct: 240 VVLNINKSRSRLVMGSENIVIYGDGYITDYIGDKKFEISPLSFFQVNPIQTKVLYEKALE 299 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + D++ ++ V+D++CG+G ++ A V G+E V VE ++NA +NG+ N F Sbjct: 300 YADLKGDEIVIDVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIA 359 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSE 399 E + + D ++LDP R G V+ + +K+ P +I+Y+SCNP TLARD Sbjct: 360 GKAEHVMKRLYKEGLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLR 419 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY ++ +DMFP+T H+E +VL SR+ Sbjct: 420 IFEDNGYKTEKVQPVDMFPYTYHVECVVLMSRL 452 >UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36 Tax=Bacteria RepID=RUMA_MANSM Length = 440 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 192/439 (43%), Positives = 279/439 (63%), Gaps = 9/439 (2%) Query: 1 MAQFYSAKRRTTTRQ-IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59 M Y+ ++ Q + V + DLD G GVA+ GKT F+ LP E + + E+K+ Sbjct: 1 MVLLYTPPQKINKLQREMEVEILDLDYQGLGVAKIQGKTWFVENALPGEKVRIKIKEEKR 60 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL-ARLMK----- 113 Q+ A + L S +R+TP+C + CGGCQ QH V++Q+ +K AL RL+K Sbjct: 61 QFGLATTKKILEASAQRQTPKCQYASRCGGCQNQHIPVEMQREAKQKALFRRLLKLQPEG 120 Query: 114 HDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + +I +GYRRR RLS+ + K ++L++GFR+ S+ IV ++QC ++ P L +L Sbjct: 121 IEFMPMIVGEAFGYRRRVRLSMLFDGKLKRLEIGFRQKNSAQIVHIEQCEVIEPALNKIL 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 K+ A L ++LGH+ELV A +G M+LR++ L+ DR L F+ E L L+L Sbjct: 181 SKLTALLSRFSQPKNLGHIELVAADNGVAMLLRYSGKLTENDRTLLLDFAVREELMLFLQ 240 Query: 234 PDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 D E E + G+ P+Y + L+L F RDFIQVN+ +NQ+M+ AL+WLDVQ +D VLD Sbjct: 241 -DDEKTEQIYGQPPFYQLADNLQLQFDIRDFIQVNSLLNQRMITAALDWLDVQKQDHVLD 299 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 LFCGMGNFTLPL+ + S VG+EG+ A+VEK + NA N QNV FY +L+++ + W Sbjct: 300 LFCGMGNFTLPLSRRVKSAVGIEGISAMVEKAKANAERNQCQNVQFYRADLDQNFADEVW 359 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 A F+K+LLDP R GAA + + +L+ +I+YVSCNPATL RD+E LL + Y + ++A Sbjct: 360 ATEPFNKILLDPPRTGAAFALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVA 419 Query: 413 MLDMFPHTGHLESMVLFSR 431 M+DMFPHTGHLES+ LF + Sbjct: 420 MIDMFPHTGHLESITLFEK 438 >UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bacteria RepID=A9KR80_CLOPH Length = 468 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 126/461 (27%), Positives = 217/461 (47%), Gaps = 39/461 (8%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 +++ +++ D+ + G+G+ + +G TLF+ + + V V + KK Y A++ + + Sbjct: 7 PGKNEVVPITIEDIGADGEGIGKVHGFTLFVKDAVVGDELLVKVMKTKKTYGYARIEQIV 66 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEVIAD 122 + SP R PRC CGGCQ Q S + Q R K + +K V + Sbjct: 67 TPSPYRVNPRCEIASKCGGCQIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPMEPIVGME 126 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P+ YR +A+ + ++ +GF + I+D +C I E L+ +R L Sbjct: 127 NPYYYRNKAQFPVGKRT-DGEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQ 185 Query: 183 -----LQAMRHLGHVELVQATSG------TLMILRHTAPLSSADREKLERFS------HS 225 H G V + G + ++ + L ++D+ + + Sbjct: 186 ENISIYDEESHQGLVRHILLRVGFTTKELMICVVINGKELPASDKLIKQILACPNLPKDF 245 Query: 226 EGLDLYLAPDSEILETVSGE--------MPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVA 276 + L +++ + GE D G ++ SP F QVN +K+ Sbjct: 246 RVTSICLNKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYE 305 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 AL++ D+ + V DL+CG+G +L LA +A V GVE +P +E + NA+LN + N Sbjct: 306 LALDYTDLTGNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNA 365 Query: 337 TFYHENLEEDVTK---QPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPA 392 F+ EE + K K D +++DP R G +++ I+ +EP RIVYVSC+PA Sbjct: 366 EFFVGAAEEVLPKQYQLSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPA 425 Query: 393 TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 TLARD + L++ GY + ++ +D FPH+ H+ES+ L +R Sbjct: 426 TLARDLKYLIEHGYDLKKVRPVDQFPHSVHVESVTLLTRRN 466 >UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FXL7_9FIRM Length = 499 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 127/457 (27%), Positives = 201/457 (43%), Gaps = 33/457 (7%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKV 66 AK+ Q+ V DL GQGV + G F+ G++P E + V + K + A++ Sbjct: 44 AKQVFKKNQVHQGQVVDLTHEGQGVVKIEGYPFFVEGVIPGEQVAIKVLKVGKSFGFARL 103 Query: 67 VRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV---------S 117 L+ SP+R P G QH + Q ++K A + ++ Sbjct: 104 EEVLTPSPDRVEITDPIGRQIGTMTLQHMAYPAQLKAKQALVKQVFSRLGKFPESLEVRP 163 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 D PW YR +A++ + + QL+ GF + S +V V+ I P ++ + R Sbjct: 164 TYGMDHPWQYRNKAQIPVRTV--KGQLETGFFRKNSHQLVPVENFHIQDPAIDQAILVTR 221 Query: 178 ACLGS-----LQAMRHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERF--SHS 225 L G + + G ++IL A+ + ++ + Sbjct: 222 DILRQLGYSAYDEESRKGQIRHIIVKRGHYSGQVMLILVVNGKGLPAEDKLIKALTKAIP 281 Query: 226 EGLDLYLAPDSEILETV--------SGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVA 276 + L L ++ + G+ + D GL + SP F QVN + + Sbjct: 282 NLVSLVLNSHTQANNVIMGPTNRLLWGQPVYQDQMLGLDFSISPHSFYQVNTPQAEALYR 341 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 ALE D+ + VLD +CG+G +L LA QA V +E VP ++ + NA NGL NV Sbjct: 342 YALEAADLSGSETVLDAYCGIGTISLALARQAGQVYAMEIVPEAIDMARANAEANGLSNV 401 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLA 395 TF EE + FD ++DP R G ++ +I+L P +IVYVSCNPAT A Sbjct: 402 TFQAGKAEEVLPAWQAEGIHFDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCA 461 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 RD + L +AGY + + +D+FP T H+E + L R Sbjct: 462 RDCQLLAQAGYELQWVQPVDLFPKTAHIEVVGLLERK 498 >UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDP0_9FIRM Length = 453 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 132/454 (29%), Positives = 221/454 (48%), Gaps = 22/454 (4%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M Q + + T + D G GV RH G F+ LL E+AE+ VT KK Sbjct: 1 MIQKGERRMALKKNDVFTAAAVDYTFDGLGVVRHEGLCFFVKDLLKGESAEIGVTAVKKN 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------ 114 +V+RRLS+SP+R PRCP CGGCQ Q +LQ K +A + Sbjct: 61 VGYGRVIRRLSESPQRIEPRCPVARQCGGCQLQIMEAELQAEFKRHRVADCFQRIGHLDV 120 Query: 115 DVSEVIADV-PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 +V V++ PW YR + ++ + + + ++ G+ ++ S DIVD +C + + +L Sbjct: 121 EVQPVLSMEFPWNYRNKVQVPVG-VNRDGKVISGYYRSHSHDIVDFDECCLHSELENQIL 179 Query: 174 PKVRACLGSLQAMRHLGHVELVQA-TSGTLMILRHTAPLSSADREKLERF---SHSEGLD 229 +R+ + L H+ + A +G +M++ + +++L ++ + Sbjct: 180 RSLRSWIEEAGDPAQLRHLLIKHAFKTGQVMVVLIAKSENLKGKDELIERLTAAYPQIRS 239 Query: 230 LYLAPDSEILETVSGEMPW---------YDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + L + + G+ + GLR S + F Q+N + + +A+E Sbjct: 240 IILNVNGREDNVILGDREIVLWGSASIEEELLGLRFQISAKSFYQINPVQTEVLYTKAIE 299 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + E+ V+D++CG G L A +A V+G+E VP+ VE ++NA NG+ N F Sbjct: 300 LAGLTGEETVIDVYCGTGTIGLSAARKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFIC 359 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSE 399 + + + D ++DP R G G + ++K+ P RIVYVSC+PATLARD Sbjct: 360 GDAGVCTAQLLERRIQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCA 419 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L + GY + + +DMFP T H+E++VL S+V+ Sbjct: 420 VLNERGYGVEVVQPVDMFPQTTHVETVVLMSKVR 453 >UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacillus RepID=D2M1T5_BACS4 Length = 469 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 107/461 (23%), Positives = 202/461 (43%), Gaps = 34/461 (7%) Query: 2 AQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQY 61 ++ S++ + Q +++ + G+GV + +F+PG LP E V + K ++ Sbjct: 8 SKQQSSQLQIKEGQRFPLTIKRMGIDGEGVGFFKRQVVFVPGALPGEEIVCEVAKIKGKF 67 Query: 62 ARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------- 114 A ++V+ S +R P CP + CGGCQ QH S + Q + K + + + Sbjct: 68 AEGRIVKIRKPSDDRIAPPCPIYKECGGCQLQHLSYEGQLKGKKDIVRQAFERYTKINLD 127 Query: 115 ---DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 + + PW YR ++++ + + ++ G S ++D++ C + PQ Sbjct: 128 KVDFHDTIGMEEPWKYRNKSQMQVGHHQ--GKVIAGLYSPNSHKLIDLEDCIVQHPQTNK 185 Query: 172 LLPKVRAC-----LGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKL--- 219 + V+ + + G + + +G ++ TA + Sbjct: 186 VTNVVKQLAADMNIAPYNERKRTGVLRTIVTRVGFETGEYQVVLVTAKKDIPKVDLFIEA 245 Query: 220 --ERFSHSEGLDLYLAPDS-------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGV 270 +R + + P E + E + R SPR F Q+N Sbjct: 246 IKQRLPDVTSIVQNINPKKTSLVFGDETIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQ 305 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 +K+ A E + +++V+D +CG+G L LA A + G++ + +E + NA+ Sbjct: 306 TKKLYDAAKEAAQLTGKEKVVDAYCGVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKA 365 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSC 389 +G++N + E + + D V++DP R G +Q +++++P RIVYVSC Sbjct: 366 HGIKNAHYVSGKAEHLLPEWEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSC 425 Query: 390 NPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 NP+TLA++ +AL K GY + L +DMFP T +E + Sbjct: 426 NPSTLAKNVDALSKGGYKLKALQPVDMFPQTAQVECVARIE 466 >UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n=84 Tax=Bacillales RepID=Y542_BACC1 Length = 459 Score = 439 bits (1130), Expect = e-122, Method: Composition-based stats. Identities = 113/463 (24%), Positives = 197/463 (42%), Gaps = 35/463 (7%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M Q + + Q V++ L G+GV + +FIPG LP E T+ ++ Sbjct: 1 MIQ-KQHESKLEVGQTFPVTIKRLGINGEGVGYFKRQVVFIPGALPGEEVVAETTKIQRG 59 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV---- 116 +A AKV + SP R CP + CGGCQ QH Q K + + + + Sbjct: 60 FAEAKVKKVRKASPHRVKAPCPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGL 119 Query: 117 -----SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 + + PW YR +++L + K +++ G K S ++D+ C I Sbjct: 120 EEKIRPTLGMENPWHYRNKSQLQVG--RKDEKVITGLYKQNSHQLIDIAHCMIQHKATNE 177 Query: 172 LLPKVRACLGS-----LQAMRHLGHVELVQATS----GTLMILRHTAPLSSADREKLERF 222 VR L + G V + + G + + T ++E+ Sbjct: 178 ATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTGEVQVTLITTKEELPNKEQFIAE 237 Query: 223 SH---SEGLDLYLAPDSEILETVSGEM---------PWYDSNGLRLTFSPRDFIQVNAGV 270 + + + G+ L S R F Q+N Sbjct: 238 VQKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNPEQ 297 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 + A + + ++++D +CG+G L LA AA V G++ +P + ++NA+ Sbjct: 298 TVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKR 357 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSC 389 +G N + E+ + K D +++DP R G +++ I+K++P ++VYVSC Sbjct: 358 HGFTNTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSC 417 Query: 390 NPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 NP++LARD +AL+K+ Y + + +DMFPHT H+E++V R Sbjct: 418 NPSSLARDVQALMKS-YEVEYVQPVDMFPHTAHVENVVKLVRK 459 >UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J6R9_DESRM Length = 457 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 132/455 (29%), Positives = 213/455 (46%), Gaps = 36/455 (7%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 T I+ + ++ L G+GV R+ +F+PG L E V + + KK +AR ++V Sbjct: 3 NNATVGDIVDLEIHGLGHSGEGVGRYQKLAVFVPGALIGERVRVRINQVKKSFARGQLVE 62 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSEVIAD-- 122 L + R P C + VCGGCQ QH Q K + + ++ EV+ Sbjct: 63 ILKQTTARIVPNCESYQVCGGCQLQHLDYQEQLTYKRSVVESALFKIGGLKGVEVLPTLG 122 Query: 123 --VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI---VDVKQCPILAPQLEALLPKVR 177 PW YR + L + ++++GF GS ++ + + C ++ ++ ++ + Sbjct: 123 MRNPWHYRNKIHLQV--KEAKGRIKLGFYAEGSYELAAGLAGQSCLLVQKEINQVIAILE 180 Query: 178 ACLGSLQAMRH--------LGHVELVQA-TSGTLMILRHTAPL-----SSADREKLERFS 223 + S + + L HV + Q SG M++ T+P ++ R + R Sbjct: 181 ELINSYKLTPYHWGEKRGLLRHVMIRQGFHSGQCMVVLVTSPEEWQAENAFSRALVARQP 240 Query: 224 HSEGLDLYLAPD------SEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVA 276 + + + E + G+ D NGL S F QVN +++ Sbjct: 241 KIVSVIRNINRNPGRIVLGEENRVMYGKEYIVDELNGLNFNISANSFYQVNTLQTEELYQ 300 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 +A E+ +Q +RV+D +CG+G L LA VVG+E VP V ++NARLNG+ N Sbjct: 301 KAKEFAQLQGHERVIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNT 360 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLA 395 F+ +E+ + + D V+LDP R G V+ I + + RIVYVSC+PATLA Sbjct: 361 KFFQGAVEKLLPRMAKDL-KPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLA 419 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 RD L K GY ++ +DMFP T H+E +VL S Sbjct: 420 RDLGVLDKLGYQTLQVQPVDMFPWTYHVECVVLMS 454 >UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Methylococcus capsulatus RepID=RUMA_METCA Length = 443 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 160/441 (36%), Positives = 236/441 (53%), Gaps = 14/441 (3%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 + KR+ + I + G+G+A +G+ +F+ G LP E+ TE K+ YA Sbjct: 3 HRGKRKPLPAEPIAAHIESFAHDGKGIAHVDGRVVFVDGALPGEDVTFVYTEIKRDYAAG 62 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHDVSEVI 120 +VV ++ SP+R RC HF +CGGC Q+ S D Q K L R+ K + + Sbjct: 63 RVVEIVTASPDRVPARCRHFALCGGCSLQYLSEDAQIALKEDLLLDQFRRIGKVEPAAQF 122 Query: 121 AD---VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 WGYR RARL Y+ K + +GFR+ S+ IVD+ CP+L P L + Sbjct: 123 PPLRGPHWGYRSRARLGARYVAKKGRELVGFREHASAKIVDMTDCPVLHPALGERIQAFA 182 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSE 237 + L L +E T ++ R ++ D +L RF +GLD+Y+ + Sbjct: 183 ELIEGLSLRERLPQIEAAVGEERTALVFRVLEDPTAEDFARLARFGKDQGLDVYIQREGR 242 Query: 238 IL------ETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 ET + F P DF QVN +N++M+ + ++ LD QPE+RVL Sbjct: 243 DSVAPVYPETAHDLSYSLPEWEVTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEERVL 302 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DLFCG+GNFTLPLA +A V GVEG V + +NA NG+ NV F+ +L + + Sbjct: 303 DLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPESCGS 362 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYTIAR 410 WA + KVLLDP+R+GA ++Q + + RIVYVSCNP+TLARD+ L+ + GY + + Sbjct: 363 WAGREYHKVLLDPSRSGALEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGYRLLK 422 Query: 411 LAMLDMFPHTGHLESMVLFSR 431 ++DMFPHT H+ES+ +F R Sbjct: 423 AGVMDMFPHTAHVESIAVFER 443 >UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHH5_9GAMM Length = 449 Score = 436 bits (1122), Expect = e-121, Method: Composition-based stats. Identities = 161/435 (37%), Positives = 245/435 (56%), Gaps = 9/435 (2%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 S K + + T+ + L +G+A+HNGKT+F+ G L E +++ +++ A+ Sbjct: 15 SPKSKASMDYPETLEIIGLSHEARGIAKHNGKTIFVTGALTGETVRYEISKKHRRFDEAE 74 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVS---E 118 V ++ SP R P C ++G CGGC QH Q ++K L RL K + Sbjct: 75 CVEVITPSPNRVEPFCQYYGQCGGCDLQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTP 134 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 ++ YRR R+ +N L + +GFR+ GSS ++ V CPIL + +L K++A Sbjct: 135 PLSGSDQEYRRSCRIGINQLMRDGTPIIGFRRRGSSKLLQVDNCPILINPINKILGKLKA 194 Query: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI 238 L + + + H EL M LR PL + L++ + LY +I Sbjct: 195 VLSEADSCKEITHAELSMGDQQGAMTLRIKKPLPESLSSSLQKLAEDNEFRLYFDNGQQI 254 Query: 239 LETVSGEMPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 Y + + ++ F P DFIQVNA VN +M+ RA++WLD++ DRVLDLF G Sbjct: 255 NAFGDEADLSYQLEKSETQIGFKPGDFIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSG 314 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +GNF+LPLAT+A SV+GVEGV +V++ Q NA+ GL N FY +L +D+ PW K G Sbjct: 315 VGNFSLPLATKAGSVIGVEGVEDMVQRAQNNAKQAGLNNCEFYRADLSKDLKALPWYKQG 374 Query: 357 FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 F K+L+DP R GA V++Q+ + + +I+YVSCNP+ LARD L++ GY ++ ++DM Sbjct: 375 FSKILIDPPRTGALEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDM 434 Query: 417 FPHTGHLESMVLFSR 431 FPHT H+ES+VLF + Sbjct: 435 FPHTSHVESLVLFEK 449 >UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marinomonas RepID=A6VUQ2_MARMS Length = 440 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 169/430 (39%), Positives = 249/430 (57%), Gaps = 8/430 (1%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 + I T V+ L +GVAR GK FI G LP E E V + +++ A +V Sbjct: 14 KPQPIGPIQTFEVDGLTHEAKGVARLQGKVTFIEGALPGETVEAQVNKAGRRFDEAVLVN 73 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIADVP 124 + S R P C HF +CGGC QH + + Q +K+ L L+ E ++D P Sbjct: 74 IIEPSVYRVEPSCQHFNLCGGCSFQHLANEQQLSAKADWLQGQLRNLITTQELETLSDTP 133 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 GYRRRARL++ K ++ +GFR S +I+ + QC +L P L++ ++ L Sbjct: 134 TGYRRRARLAI--DIKKGRMVLGFRGKASKEIISIDQCVVLTPNLQSTFLLLKLKLLEND 191 Query: 185 AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA-PDSEILETVS 243 LGHVEL++ T G + R T+P+S + E ++ + LY P E Sbjct: 192 LAGVLGHVELLEDTKGVSALFRLTSPISDELKNAWEDWAEKGRVALYWQAPKVGKAEVAL 251 Query: 244 GEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 +M +YD LRL + P+DFIQVNA +NQKMV +A++WL+ +D +LDLFCG+GNF+LP Sbjct: 252 EKMRYYDLGDLRLKYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDVILDLFCGVGNFSLP 311 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA A +V+GVE +VE ++NAR+NG N++F +L + V + + K KVLLD Sbjct: 312 LAVHAQAVIGVEVQETMVEAARENARVNGFDNLSFVAADLTKPVNNELF-KQTITKVLLD 370 Query: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 P RAGA + IIK+ P +I+YVSCN +TLARD+E L+ GY + R++++DMFP T H+ Sbjct: 371 PPRAGAFEFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLMDMFPQTSHV 430 Query: 424 ESMVLFSRVK 433 E+M+L + K Sbjct: 431 ETMMLLQKKK 440 >UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 Tax=Bacillales RepID=YFJO_BACSU Length = 466 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 110/462 (23%), Positives = 198/462 (42%), Gaps = 35/462 (7%) Query: 1 MAQFYSAKR-RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59 M Q Q +++ L G+GV K +F+PG LP E V T+ + Sbjct: 1 MNQQKKQAPVELKVGQTFPLTIKRLGINGEGVGYFKKKVVFVPGALPGEEVVVQATKVQP 60 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--- 116 +++ ++ + S R P CP + CGGCQ QH + Q R K + + ++ Sbjct: 61 KFSEGRIKKIRKASEHRVAPPCPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFK 120 Query: 117 -------SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQL 169 + D PW YR +++ + ++ + G S DIV +K C + P Sbjct: 121 VENMEIKETIGMDNPWNYRNKSQFQIGRS-QSGSIIAGLYGLDSHDIVPIKDCIVQHPAT 179 Query: 170 EALLPKVRACLGS-----LQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKL- 219 VR L + G V + +G + ++ TA + +E++ Sbjct: 180 NKTTGIVRRILEDFNVSVYNERKRKGDVRTIVTRVGFETGEVQVVLVTAKETLPHKEEIV 239 Query: 220 ----ERFSHSEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNA 268 +R + + + E + ++G+ + G + S R F Q+N Sbjct: 240 KAIQKRLPEVKSIIQNVNGAKTSVIFGEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNP 299 Query: 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA 328 K+ + + +++V+D +CG+G + +A A V G++ + ++ ++NA Sbjct: 300 EQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNA 359 Query: 329 RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYV 387 + +G+ N T+ E + K D V++DP R G + I K++P R VYV Sbjct: 360 KKHGMANATYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYV 419 Query: 388 SCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 SCNP+TLA+D + L K Y + + +DMFP T H+E++ Sbjct: 420 SCNPSTLAKDLQTLSKD-YRVDYIQPVDMFPQTAHVEAVARL 460 >UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDG7_HELMI Length = 490 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 144/489 (29%), Positives = 217/489 (44%), Gaps = 66/489 (13%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 I T S+ + G+GVAR G LFIP +P E + +T+ KK +ARA+++ L Sbjct: 1 MRPGDIDTFSIERMTLQGEGVARPGGMALFIPECMPGERVKARITQVKKNFARAELLEVL 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHD----VSEVIAD 122 +PER P C F CGGCQ Q Q R K AL RL + + V A Sbjct: 61 EAAPERVEPPCRVFSRCGGCQLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVGAA 120 Query: 123 VPWGYRRRARLSLNYLP--KTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 PW YR R ++ L + LQMG+ + S ++V+ +CP+L +L +R L Sbjct: 121 NPWRYRNRVQMHLRREAGAPGKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHL 180 Query: 181 GSLQAMRHL--GHVELVQA----TSGTLMILRHTAPLSSADREKLERFSHS--------- 225 + L HV L +G +M++ + SA R+ + + Sbjct: 181 PEIDPAGELPIRHVVLKTTTPLERAGEMMLILVFSAWRSAWRKAVGDLAKRLMGEGATGE 240 Query: 226 ---------------------------EGLDLYLAPDSEILETVSGEMPWYDS------- 251 + LY+ + + V G + Sbjct: 241 GATGEGATGEGATGEGATGEGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKER 300 Query: 252 ------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 GL++ P F QVN + + E + + ++D +CG G +L LA Sbjct: 301 LTDYLPGGLQIEVGPASFTQVNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLA 360 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 A V+G+E VP VE Q+NA NG+ NV F +E+ + D ++LDP Sbjct: 361 RDCARVIGIEEVPMAVEDAQKNAEQNGITNVEFLTGKVEDLLPSLLERACVPDVIVLDPP 420 Query: 366 RAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R G V++ I + P RIVYVSC+PA+LARD+ L G+ + ++ +DMFP TGH+E Sbjct: 421 RRGCHARVIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVE 480 Query: 425 SMVLFSRVK 433 ++VL SRVK Sbjct: 481 TVVLMSRVK 489 >UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1I4_HALOH Length = 453 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 122/448 (27%), Positives = 208/448 (46%), Gaps = 33/448 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 +I + ++ L G+ + R+ G +F+P +P E V + E KK YAR ++ L+ + Sbjct: 5 GDLIELKLDTLGHGGEAIGRYRGLVVFVPEGIPGEKVRVKIKERKKNYARGEIKEILTPA 64 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--------HDVSEVIADVPW 125 PER+ P C FG+CGGC Q LQ K + ++ + AD PW Sbjct: 65 PERKEPECEVFGLCGGCHLQQMDYSLQLLHKQKIVKDTLERIGGFEEVRVNEVIGADHPW 124 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS--- 182 YR +A+ L + ++ GF + G+ +V +QC I P + + K + L + Sbjct: 125 IYRNKAQFPLGSDNE-GRVITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNNYDL 183 Query: 183 --LQAMRHLGHVELVQATSG----TLMILRHT-----APLSSADREKLERFSHSEGLDLY 231 H G + + G +++ T L R+ + +G+ Sbjct: 184 TVYDEKTHTGLLRHLVVRVGICTNQALLIFVTRDKKFKELQEIARKLMTEIPELKGVLQN 243 Query: 232 LAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + P + + G + D G +R SP F QVN +++ ++ + Sbjct: 244 INPRRTNVIMGDKTLLIKGNDYYIDYIGSIRYAISPHSFFQVNTLQTERLYNTVRKYAGL 303 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 ++ V+D +CG G+ + LA +A +V G+E V + +E ++NA LNG+ N F +E Sbjct: 304 SGQETVVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVE 363 Query: 345 EDVTKQPWAKN-GFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 + + + K D ++ DP R G M ++++ P +IVYVSCNPATLARD + + Sbjct: 364 DKLPELVDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLKE-I 422 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFS 430 KA Y I + +D+FP T H+E +V Sbjct: 423 KACYDINEVQPVDLFPQTYHVECVVKLE 450 >UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacteria RepID=A4XGR8_CALS8 Length = 452 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 119/451 (26%), Positives = 210/451 (46%), Gaps = 30/451 (6%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 Q V ++ L+ QG+AR +G +F+ +L E ++ + E KK+YA+A ++ L Sbjct: 2 VKKSQEYIVKIDTLNHQAQGIARIDGFVVFVDNVLIDEVVKIKIEEVKKEYAKANLIEIL 61 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV-------SEVIADV 123 SP R+ P CP++ +CGGC HA Q + K + + + + Sbjct: 62 EKSPYRKEPECPYYYLCGGCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPRINDVIGMEN 121 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 P+ YR + L + K + Q+GF + + DIVD+ C I + ++ ++ + Sbjct: 122 PFRYRNKTALPVGGDYK--KPQIGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKH 179 Query: 183 ----LQAMRHLGHVELVQATS----GTLMILRHTAPLSSA----DREKLERFSHSEGLDL 230 +H G + + + +MI+ + ++ L FS + L L Sbjct: 180 KIEVYDEKKHKGVLRHIVVRNSFAFDEMMIILVCTKVPENLETIKKDILNNFSKIKSLYL 239 Query: 231 YLAPDSEILET------VSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 L P + + G D G L SP+ F QVN+ + + ++ +++L Sbjct: 240 NLNPKRTNVILGDEDILIWGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLR 299 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + V D++ G+G ++ +A V +E V VE +++++ NG+ N+ F Sbjct: 300 NIDAEIVFDVYSGIGTISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRA 359 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E ++ K V+LDP R+G +++ +I+ + I+YVSCNP+TLARDS L Sbjct: 360 EIEIPKLLKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILF 419 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 GY I + +DMFP T H+E +VL + VK Sbjct: 420 SNGYEILEVQPVDMFPQTFHVECVVLMTNVK 450 >UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C5ELW2_9FIRM Length = 475 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 133/476 (27%), Positives = 205/476 (43%), Gaps = 55/476 (11%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 Q TV++ D++ G GV + +G FI + + + KK Y A+++ L Sbjct: 1 MEKNQEFTVTIEDMNEDGAGVGKLDGYIWFIKDTVIGDVVRAKAMKMKKSYGFARLMEVL 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHD------VSEVI 120 S R P CP CGGCQ Q S + Q R K + R+ K + + Sbjct: 61 EPSAGRVEPPCPVSRQCGGCQLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMG 120 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC- 179 + PW YR +A+ K ++ GF + DI+ C + + + +L ++ Sbjct: 121 MENPWRYRNKAQFPFGRN-KDGEIIAGFYAGRTHDIIGNDDCLLGVEENQEILGIIKGFM 179 Query: 180 ----LGSLQAMRHLGHVELVQAT----SGTLMI----------------LRHTAPLSSAD 215 L H G V V +G LM+ LR + S AD Sbjct: 180 KENGLEPYDENAHKGLVRHVLIRKGFKTGELMVCLVVNGRTLGGRLEDGLRDSRADSLAD 239 Query: 216 REK-------LERFSHSEG-LDLYLAPDSEILETV--------SGEMPWYDSNG-LRLTF 258 +E+ +G + + + E + G D G ++ Sbjct: 240 NSADRLAGCLVEKLCQVKGMTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYIGDVQYQI 299 Query: 259 SPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVP 318 SP F QVN +K+ ALE+ D+ + V DL+CG+G +L LA +A V GVE +P Sbjct: 300 SPLSFYQVNPVQTEKLYGTALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIP 359 Query: 319 ALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN-GFDKVLLDPARAGAAGV-MQQI 376 +E ++NA LNG+ NV F+ EE + +Q D +++DP R G V + I Sbjct: 360 QAIEDARRNAALNGMDNVEFFVGKAEEVLPEQYEKNQIHADVIVVDPPRKGCDTVCLDTI 419 Query: 377 IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 +K+ P ++VYVSC+ ATLARD L GY + ++ DMFP T H E +V R Sbjct: 420 LKMRPEKVVYVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475 >UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD9_9CLOT Length = 460 Score = 433 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 123/451 (27%), Positives = 203/451 (45%), Gaps = 31/451 (6%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 +I + + + G GV R +G +F+PG + +V + + K YA K+ + Sbjct: 4 MRKNEIAVIEITGYTAEGNGVGRLDGMAVFVPGAAVGDTLQVRIVKILKNYAFGKIEELV 63 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPW----- 125 S +R P CP F CGGC +H S + +K + ++ VP Sbjct: 64 VPSKDRIIPDCPCFSQCGGCSFRHISYKAELEAKRRRVEDAIQRIGGFDRFPVPPVVGAA 123 Query: 126 ---GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 YR +A+L + + + MGF S IV ++ CP+ + V+ + Sbjct: 124 KINRYRNKAQLPIGAD-RDGRGIMGFYALHSHRIVPIEDCPLQPKMFAQAVASVKQWMEE 182 Query: 183 LQAMRH--------LGHVELVQAT-SGTLMILRHTAPLS-SADREKLERFSHSEGL--DL 230 + + L H+ L +A+ +G LM+ E ++R + Sbjct: 183 YKVPVYHEESHSGLLRHLYLREASATGALMVCLVGNGDELPHSGELVKRLREDLPCLESV 242 Query: 231 YLAPDSEILETVSG---------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEW 281 + E + G + GL SP F QVN + + A E+ Sbjct: 243 VFNSNREKTNVILGKRCQALWGKDGIVDHLCGLSFFLSPLSFYQVNRDQAEILYRLAGEY 302 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 +Q ED VLDL+CG G + +A++A V+GVE VP +E + NA NG++N+ F Sbjct: 303 ASLQKEDTVLDLYCGTGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICG 362 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + + V V++DP R G V++ I+++ P +I+YVSC+PATLARD + Sbjct: 363 DSAQAVQMLRKRGERPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLKL 422 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+KAGY + LA +D+FP T H+E++ L + Sbjct: 423 LVKAGYCLQTLAPVDLFPRTAHVETVALLEK 453 >UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=5 Tax=Cyanobacteria RepID=Y942_THEEB Length = 449 Score = 433 bits (1113), Expect = e-120, Method: Composition-based stats. Identities = 127/446 (28%), Positives = 207/446 (46%), Gaps = 34/446 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 I + ++ L G+GV R + +F+ +P + V +T K+QYA KV+ + S Sbjct: 7 GATIELRIDSLSHTGEGVGRWQDRVVFVADTVPGDRLRVRLTHVKRQYAHGKVLEVVQPS 66 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIADVPW 125 +R P C CGGCQ Q + Q +K + + + + A P+ Sbjct: 67 GQRVRPNCIVADKCGGCQWQRVAYATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPF 126 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 GYR + L + + G+ + GS +V++ QCP+ P+L LL ++ L Sbjct: 127 GYRNKVTYPLG--RRHGAVVAGYYQKGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPI 184 Query: 186 MRHLGH--------VELVQATSGTLMILRHTAPLSS----ADREKLERFSHSEGLDLYLA 233 R H + + Q T L+ L PL + L+RF G+ + Sbjct: 185 YREQTHEPGFRHLGLRIGQRTGEQLITLVLAGPLPAGLAAEAEGWLQRFQGVIGVCVNFN 244 Query: 234 PD------SEILETVSGEMP-WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQP 286 + + ++G W + G+R + F QVN +++V +W+ Sbjct: 245 HHVGNRIFGDETQVLAGRPYLWEEMAGVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPTG 304 Query: 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 ++R++DL+CG+G +LPLA A V+GVE A V++ NA+ NG+ N F EE Sbjct: 305 QERLVDLYCGVGTLSLPLAGAVAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEW 364 Query: 347 VTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG 405 + + D ++LDP R G V+ I+ P R++YVSC+PATLARD L G Sbjct: 365 LPRY---DQAVDVLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTG 421 Query: 406 -YTIARLAMLDMFPHTGHLESMVLFS 430 Y +A++ LDMFP T H+E++ L + Sbjct: 422 TYQLAKIQPLDMFPQTAHVETIALLT 447 >UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 Tax=Legionella RepID=RUMA_LEGPL Length = 444 Score = 432 bits (1112), Expect = e-120, Method: Composition-based stats. Identities = 158/448 (35%), Positives = 248/448 (55%), Gaps = 25/448 (5%) Query: 3 QFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYA 62 + K T++ T + +L G+G+AR NGK FI G LP E E T KK + Sbjct: 2 RKVKPKLNLTSQ---TARIVNLSHDGRGIARINGKATFIQGALPGEVVEFQYTRVKKDFD 58 Query: 63 RAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD------- 115 K++ + S R P+CPH+ +CGGC QH S + Q R K + L L+ Sbjct: 59 EGKLLSIVEPSTLRVEPKCPHYQMCGGCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQT 118 Query: 116 VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLP 174 V + PW YR +ARLS ++ K Q +GFR+ + I ++ QCPIL +++ + Sbjct: 119 VLSPLTSHPWNYRNKARLSTRFVEKKQSTMVGFRERNNPRFITEINQCPILNSKIDTDIV 178 Query: 175 KVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 +R + +++ + + +E+ + +I R+ PL+ D K+ +F+ ++L P Sbjct: 179 HLRKLIDTMEDKQCIAQIEVAAGDNEVALIFRNLTPLTEQDESKIRKFAQQFQYKVFLQP 238 Query: 235 DS----------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + +S E+P Y + F P DF QVNA +N+KMV +A++ +++ Sbjct: 239 GGLDSVFCFYPSDAHAYLSYELPDYQ---ITFQFHPNDFTQVNAELNRKMVKQAIQLMEL 295 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + D VLDLFCG+GNF+LP+A + V+GVEG +VE+ NA+ N + NV FY NL+ Sbjct: 296 KNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLD 355 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 + + + F KVL+DP R+GA +++QI ++P RIVYVSCNP TLARD++ L+ Sbjct: 356 DVMEVRNLVNTSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQ 415 Query: 405 -GYTIARLAMLDMFPHTGHLESMVLFSR 431 GY + ++DMFPHT H+ES+ LF + Sbjct: 416 KGYVLITAGVMDMFPHTAHVESIALFQK 443 >UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Alteromonadales RepID=RUMA_PSEHT Length = 441 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 151/440 (34%), Positives = 245/440 (55%), Gaps = 9/440 (2%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MAQ + A ++ +Q + + + +D G+G+A+HN K F+ LP E + T+ DK + Sbjct: 1 MAQIFKATKKPLKQQSLVLDITAMDHHGRGIAKHNNKVCFVSNALPNEQVKATIIADKAR 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD----- 115 Y+ A+ + L S R P C H+ CGGCQ QH Q K A+++L + Sbjct: 61 YSEAQTHKVLQASEYRVAPFCEHYNQCGGCQLQHLDSSQQVVEKQIAVSKLFEKFAKLDE 120 Query: 116 --VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + YRR ARL++ + K +++ +G+R +GS I+ + +CP+L+ + Sbjct: 121 LNWQAPLLSKATHYRRSARLAVMFDKKAKKMHVGYRASGSKSIISINECPVLSEVFANVF 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 + +A+ + H++L Q +I+RHT P+S + + + + + L Sbjct: 181 TVFDNLINQHKALHSVSHLQLCQGDEQNFVIIRHTKPISEDIKALVAQSAAEQQWQLVWQ 240 Query: 234 PDSEILETVSGEMPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 +SE++E MP+Y + GL+ F +FIQVNA VNQ M+ +A WL ++ ++ VL Sbjct: 241 SESEVIEHSHLAMPFYALEELGLKFEFGLNNFIQVNASVNQAMLKQAQNWLALKGDENVL 300 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DLFCG+GNF+L LA QA +V+GVEGV + V QNA N + N F +L + Sbjct: 301 DLFCGIGNFSLVLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLTNKIETAS 360 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 W D ++LDP+R GA V++Q+ + I+YVSC+P TLARDS + +AG+ + ++ Sbjct: 361 WFNKNLDVLVLDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKI 420 Query: 412 AMLDMFPHTGHLESMVLFSR 431 +++MFPHTGH+E+M LF R Sbjct: 421 GLMNMFPHTGHIETMALFQR 440 >UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5X0_NATTJ Length = 454 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 118/449 (26%), Positives = 207/449 (46%), Gaps = 27/449 (6%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 R + +T++++DL+ G+GV ++ +F+P LP E +T+TE KK YAR +V++ Sbjct: 5 RPVKKEEKLTLTIHDLNHQGEGVGKYRNFAIFVPFALPGEKVRITITEVKKNYARGQVLQ 64 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--------HDVSEVI 120 S +R P CP F CGGCQ QH S Q + K +A MK + + Sbjct: 65 HQDRSSQRVKPPCPFFQECGGCQLQHLSYKGQLQYKENLVANQMKKVAGLKNPRVLPAIG 124 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + PW YR + ++ + P + ++G + S ++V++ C I +L K+R + Sbjct: 125 MESPWYYRNKFQIPV--KPIGGKPRLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLV 182 Query: 181 GSLQAMRH---LGHVELVQATSGTLMILRHTAPLSSADREKLER------FSHSEGLDLY 231 S + + L H+ + L D +++ ++ G+ Sbjct: 183 DSYEKEFYNCELKHIISRVGDKTDQVQLTFVTGSEKIDNKQMILEPLKNGMANLVGIVQN 242 Query: 232 LAPD------SEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + + +T+ G D + S F QVN + + + E + Sbjct: 243 INKKPRGNVLGDRFKTLWGREYLMDNLLDKKFRVSAGAFYQVNPSQTEVLYQKVFELCKL 302 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + + V+D++CG+G +L A A+ VVG+E V+ N +NG +N FY E Sbjct: 303 KGVENVMDIYCGIGTISLLAAENASKVVGIEIAEEAVKDANINKNINGQENAWFYQARAE 362 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 ++ T+ + V++DP R G ++ + + P +I YVSCNPATLARD L++ Sbjct: 363 DEKTESIIQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPATLARDVGKLIE 422 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY +DMFP T H+E + + +++ Sbjct: 423 FGYYPELFQPVDMFPQTTHIEVICILTKI 451 >UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desulfobacteraceae RepID=A8ZZY9_DESOH Length = 471 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 124/474 (26%), Positives = 198/474 (41%), Gaps = 46/474 (9%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M Q + + + L G+G+AR +G +F+ LP + +T K Sbjct: 1 MNGVDQPVSPVRKGQAVDLEIETLAFGGRGLARVDGLAVFVDHTLPGDRVSARITRKKSN 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------ 114 +A A+++ LS SP R P+CP+ G CGGC+ Q D Q K +A ++H Sbjct: 61 FAEARLLEVLSPSPFRVLPQCPYCGHCGGCRLQILDYDKQLDCKHEQVADALRHIGLVEN 120 Query: 115 -DVSEVIADVP-WGYRRRARLSLNYLPK-----------TQQLQMGFRKAGS-SDIVDVK 160 V V+ P WGYR + S +G G+ ++DV Sbjct: 121 VPVHPVMPADPVWGYRNKMEFSFADRRWLLPEEMEMENIDTSFALGLHVPGTFHKVIDVD 180 Query: 161 QCPILAPQLEALLPKVRAC-----LGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSA- 214 C +L A+L VRA + + H G + +++A Sbjct: 181 ACLLLPEPGNAILGDVRAYARASGVPAYGLKSHQGFWRFLMLRHSVAHDNWMVNIVTAAE 240 Query: 215 DREKLERFSH------SEGLDLYLAPDSEILET--------VSGEMPWYDSNG-LRLTFS 259 DR L+ + E + + + + G D G S Sbjct: 241 DRRLLQPLADLLADRYPEVVSVVNNITARKAGVAQGEYEILLHGAPFISDRLGRFSFDIS 300 Query: 260 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 F Q N +++ A E+ + V+DL+CG G + L+ A V+G+E + Sbjct: 301 ANSFFQTNTRGAERLYTVAREYAGLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDS 360 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIK 378 + N R N + NV F +++E + + D +++DP RAG V++Q++ Sbjct: 361 CLADAVNNCRTNNVSNVRFVAGDVKETLPRL---DCRADVLVIDPPRAGMHKDVVEQVLA 417 Query: 379 LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + P RIVYVSCNPATLARD L +A YT+A + +DMFPHT H+E + + Sbjct: 418 MAPPRIVYVSCNPATLARDVAMLSEA-YTVAEVQPVDMFPHTPHIECVARLDKK 470 >UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Gammaproteobacteria RepID=RUMA_FRAT1 Length = 449 Score = 430 bits (1105), Expect = e-119, Method: Composition-based stats. Identities = 153/451 (33%), Positives = 235/451 (52%), Gaps = 21/451 (4%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M + S I + L G+G+A+ +GKT FIP LP E + T K + Sbjct: 1 MGR--SRHHNKLKEGIFEAEITALSHDGRGIAKVDGKTTFIPFTLPGEVVKFEYTFTKAK 58 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------ 114 + AKVV + S R P C HF +C GC QH S D Q K L +K+ Sbjct: 59 FDEAKVVEYVKKSSNRVNPPCDHFQICRGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVE 118 Query: 115 ---DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 + + GYR +ARL + Y+ K ++ +GFR+ + D+ +C +L P + Sbjct: 119 PENILPPLRTSNTEGYRNKARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGD 178 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 + ++ + + +L +H+ +E+ + MI+RH P ++ D EKL F+ +Y Sbjct: 179 KITEISSFIETLSIYQHIAQLEIAIDDTRPAMIVRHLEPFTNEDLEKLRSFAQENNYWIY 238 Query: 232 LAPDS-EILETVSGEMPWYDS-------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 L + + + + G+ + F P DF QVN +N+KM+ RA+E LD Sbjct: 239 LQSKGPDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIELLD 298 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + D ++DLFCG+GNFTLP++ A +V+GVEG P +V++ ++ A N + NV FY NL Sbjct: 299 ISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANL 358 Query: 344 EEDVTKQPWAKN-GFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E + W N ++K+LLDP RAGA V I K RIVYVSC+ A LARD+ L+ Sbjct: 359 FESFEDKEWFNNFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILV 418 Query: 403 K-AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY + ++DMFPHT H+ES+ +F ++ Sbjct: 419 NTKGYKLISAGVMDMFPHTMHVESIAVFEKI 449 >UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRD2_9SYNE Length = 483 Score = 429 bits (1104), Expect = e-119, Method: Composition-based stats. Identities = 122/454 (26%), Positives = 206/454 (45%), Gaps = 35/454 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 K + + + V++ DL + G GV R + +F+P P + V +T+ K + K Sbjct: 33 KPKWRQGETLKVTITDLSNSGDGVGRWEDRVVFVPNTAPGDEMLVKLTKAKPTHGFGKPA 92 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEV 119 +S SP+R P C CGGCQ Q + + Q +K + + + Sbjct: 93 GIVSPSPKRVRPACIVADKCGGCQWQQVNYEEQLAAKHRLVVDALARIGKLSNVRVDPVL 152 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 A+ GYR +A L P ++ G+ + GS +V++ QCP+ +L+ LL V+ Sbjct: 153 AAEEQLGYRNKATYPLGLSPTKD-VKAGYYQKGSHRLVNLNQCPVQDERLDPLLAAVKKD 211 Query: 180 LGS-----LQAMRHLGHVELVQ----ATSGTLMILRHT-----APLSSADREKLERFSHS 225 + + H GH++ + +G +++ + + ++ +ER+ Sbjct: 212 IQAREWKIYDERSHKGHIKHLALRIGRRTGQILVTLVSRSTKLKGIHEQAQQWMERYPEV 271 Query: 226 EGLDLYLAPDSEI------LETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARA 278 G+ + L ++G + L P F QVN ++++ Sbjct: 272 VGVLVNLNWKKTNAIFGPETFLIAGSSYLEEKFANLTFHIQPATFFQVNTTQAERLLDEI 331 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 L + ++ ++D +CG+G FTLPLA Q +G+E V + Q+NA LNG++NV F Sbjct: 332 QTELALTGDEVIVDAYCGVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENVGF 391 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARD 397 ++ + D +LLDP R G V++ I+ ++P RIVYVSCNPATLARD Sbjct: 392 RIGDVAALLPDL---DVKPDILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARD 448 Query: 398 SEALLK-AGYTIARLAMLDMFPHTGHLESMVLFS 430 L + GY + R+ D FP T H+E V Sbjct: 449 LRVLSETGGYRVTRVQPADFFPQTAHVECAVFLE 482 >UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=1 Tax=Gloeobacter violaceus RepID=Y3134_GLOVI Length = 457 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 121/449 (26%), Positives = 204/449 (45%), Gaps = 37/449 (8%) Query: 14 RQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 Q +TV + L + G G+AR +G+ LF+ G +P + E + KK + K+++ + Sbjct: 14 GQTVTVPITALAAGGDGIARLTDGRVLFVAGAVPGDTVEARLVHLKKDHGFGKILQIVQA 73 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIA-DVP 124 SP R CP CG CQ Q Q +K + ++H V VIA P Sbjct: 74 SPHRIEAPCPVAERCGSCQWQWIDYPFQLEAKQRQVREALEHLGGFAEPPVEPVIAQPRP 133 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-- 182 +GYR ++ + + + +G+ + S IV + CP+ +L+ LL R + + Sbjct: 134 FGYRNKSTFPIGRDAR-GEPVIGYYQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQG 192 Query: 183 ---LQAMRHLGHVELVQATSGT---------LMILRHTAPLSSADREKLERFSHSEGLDL 230 H G + + G ++ + + + A + ++RF+ G+ L Sbjct: 193 WSIYDEKHHRGALRHLGLRIGERTGQRLLTFVVNGQTLSGIKPAAQALMDRFADLVGVCL 252 Query: 231 YLAPD------SEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + ++G+ + +G R P F Q+ + + D Sbjct: 253 NTHTERGNTIFGPQTRCLAGQDFIEEVLDGFRFRIEPTTFFQICTSQAEILARLVARGAD 312 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 E V+D +CG+G +LPLA A +VVG+E VE+ +QNAR+NG++N F + Sbjct: 313 ATAEQTVVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIENCRFLAGTV 372 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E + D V++DP R G V++ I+ P+R+VYVSCNPATLARD + L+ Sbjct: 373 EALLPDLRA-----DIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARDLKRLV 427 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 GY + + +D+F T H+E + R Sbjct: 428 AGGYCLVGVQPVDLFAQTHHVECVATLER 456 >UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FPA8_DESHD Length = 446 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 125/443 (28%), Positives = 199/443 (44%), Gaps = 22/443 (4%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M K+ T + IT+ L S G GV H GK F+ GLLP E ++ + E+KK Sbjct: 6 MDTKPMVKKSADTHRPITIECLRLSSDGSGVGYHEGKATFVSGLLPGETGQIRIVEEKKN 65 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI 120 + R +++ S ER P C FG CGGCQ QH + K + + + Sbjct: 66 WQRGQLLSLCKTSAERIEPPCSVFGRCGGCQLQHLNYAQTLLWKKRWVEDALTRIGKIPL 125 Query: 121 ----------ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLE 170 D PW YR +ARL + + +G+ + S V C +++ + Sbjct: 126 EKVKVHPTLGMDEPWRYRNKARLH-----RGEGNTLGYYQEKSKATVPFTDCLLISESMN 180 Query: 171 ALLPKVRACL--GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL 228 + + A L L + + + G M++ + E + + Sbjct: 181 RWVREAEAILGQQDKNLFPDLNALTFRENSQGEGMLILDSLKDVRQADVWSEMGGGTHSV 240 Query: 229 DLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + E + D G R SP F+QVN +K+ + L+W ++ E Sbjct: 241 -WGINSSGEPERIAGQKEFTEDVLGARFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEK 299 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 V DL+CG+G TL LA +A V G+E P VE ++NA+ N + NV F E+ Sbjct: 300 VVWDLYCGIGTITLALAAKAKKVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQ 359 Query: 349 KQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 + + V+LDP RAGA V++ +++L+P +I+YVSC+ TLARD L GY Sbjct: 360 QI---GDYPHIVVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYR 416 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 + + +DMFP T +ES+++ + Sbjct: 417 VVEVQPVDMFPWTVSVESIIVMT 439 >UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01B5 Length = 446 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 126/449 (28%), Positives = 208/449 (46%), Gaps = 36/449 (8%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + V V D+++ G GVA++ G +FIPG +P + A+V + + K YA K++ + Sbjct: 3 KNEEYIVEVIDINANGGGVAKYEGMAVFIPGAVPGDVAKVKIIKVAKSYAVGKLLELVEA 62 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIADVP 124 S R P C + CGGC QH + Q + K + ++ + + + P Sbjct: 63 SEHRAEPPCVYAAKCGGCVAQHIKYEFQLKYKQKQVKDCLERIGKIREVEVLPTIAMENP 122 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-- 182 YR +A+ + + ++Q+GF A S +VD++ C I + A++ +R Sbjct: 123 IHYRNKAQYPIREV--DGKIQIGFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXK 180 Query: 183 ---LQAMRHLGHVELVQATS-----GTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 H G + + ++ L ++ +ER G+ L Sbjct: 181 ISIYNEATHKGLARHLVIRNSINFDEAMVCLVINGKKLPHAQDLVERLRAIPGITGILLN 240 Query: 235 DS---------EILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + E T+ G D G L S F QVN + + AL + Sbjct: 241 HNTAKGNVILAEQTTTLDGRDYIMDKIGELTFKISLLSFFQVNPVQTKVLYDIALGVAAL 300 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + VLD +CG+G +L LA +A VVGVE +P V +NA++NG+ NV F N E Sbjct: 301 TGSETVLDAYCGIGTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAE 360 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 + V FD V++DP R G ++ I+ P ++VY+SC+PATLARD + + + Sbjct: 361 DVV-----LGEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYE 415 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY + ++ +DMFP+T H+E+ VL SR+ Sbjct: 416 NGYVVNKVQPVDMFPYTSHVETCVLLSRL 444 >UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=11 Tax=Lactobacillus RepID=Y1698_LACJO Length = 450 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 110/451 (24%), Positives = 199/451 (44%), Gaps = 30/451 (6%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 QI+ + + DL GVA +G T+F+ LP E + + KK +A AK+ + Sbjct: 1 MQKNQIVDLEITDLSYEAMGVAHLDGMTVFVNNALPGEIVSAKLLKVKKNFAFAKIEKIK 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADV 123 +SP+R + + G H D Q K + L+ + + Sbjct: 61 KESPDRINVKLRQWVQTGLASLAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPE 120 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 GYR +A++ + + +L +GF + S D+V + P+++ +L KVR L Sbjct: 121 ETGYRNKAQVPVREV--NGKLDIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKN 178 Query: 183 ----LQAMRHLGHVELVQAT----SGTLMIL-RHTAPLSSADREKLERFSHSEGL-DLYL 232 + + G V ++ +G +M++ +E + S +G+ + L Sbjct: 179 HVPAYDEIHNKGEVRYLEVRRSKATGEIMVILVCLHKDFPQLKEVTKEISEIKGVTSVVL 238 Query: 233 APDSEILETV--------SGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + + + GE D G + SP+ F Q+N+ ++ A++ D Sbjct: 239 NHNPKKTNVILGKKDYLLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKAD 298 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 ++P+D V+D + G+G L +A +V G+E + VE NA+LNG+ N + Sbjct: 299 LKPDDVVIDAYSGIGTIGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKA 358 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 EE + + D + +DP R G + ++ P +IVY+SCNPAT+ RD + Sbjct: 359 EEVMPRWAKEGLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFK 418 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 + GY + +DMFP T H+E++ + R + Sbjct: 419 EQGYDFDEIDPVDMFPQTPHVEAVAVLERTE 449 >UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Rickettsiella grylli RepID=A8PP31_9COXI Length = 443 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 160/438 (36%), Positives = 242/438 (55%), Gaps = 16/438 (3%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 ++ + ++ + + + G+G+A NGK FI LP E + T+ ++ Y A+ + Sbjct: 5 KKYSYKETTPIFITGISHEGRGIAHINGKITFIENALPGERVSIVYTKKRRAYDEARATQ 64 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS-------EVIA 121 L+ S +R P+CPHF CGGC QH + Q + K L + H + Sbjct: 65 ILNASTDRIQPQCPHFNQCGGCNLQHLNHQAQLQHKEKILVNQLTHVAKTKPTSLLAPVM 124 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 WGYRRRARL + Y+ K Q + +GFR+ + ++ C L +++ LL ++ + Sbjct: 125 ATGWGYRRRARLGVKYVAKKQAVLVGFREKNGHYLAQIQTCKTLDFRVDRLLIPLQQLIQ 184 Query: 182 SLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEIL-E 240 SL A + +E+ ++ RH PL+++D L+ F+ + LYL P +E Sbjct: 185 SLNAFHDIPQIEVALGDEILGLVFRHLVPLNNSDVLALKNFAKKYSVQLYLQPGNEKTTH 244 Query: 241 TVSGEMPWY--------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 + E P L F P FIQ+NA +NQ M+ A+E L DR+LD Sbjct: 245 CIWPENPQLLSYRLQNKAHRSLEFFFEPHHFIQINATINQAMIQHAIELLSPHFSDRILD 304 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 LFCG+GNF+LPLA + SVVG+EG ALVE+ + NAR N + N FY +L + K+ W Sbjct: 305 LFCGLGNFSLPLALRCQSVVGIEGHSALVEQAKINARHNAINNTQFYTADLTGSILKEVW 364 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 A+ F+K+LLDP R+GA V+QQI + + ++VY+SCNPATLARDSE L+K GY + R Sbjct: 365 AQQTFNKILLDPPRSGALEVIQQIARWKVEKMVYISCNPATLARDSEELIKQGYHLERAG 424 Query: 413 MLDMFPHTGHLESMVLFS 430 ++DMFP T H E++ LF+ Sbjct: 425 IMDMFPQTHHSEAICLFT 442 >UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT87_9CLOT Length = 506 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 124/479 (25%), Positives = 203/479 (42%), Gaps = 59/479 (12%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + V++ D+ G G+ R +G FI + + V + KK Y A+++ Sbjct: 19 KMKKNDEFVVAIEDMSEDGAGIGRVDGYIWFIKDTVIGDVVRAGVMKMKKTYGFARLIEV 78 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMK------------ 113 + S +R PRCP CGGCQ Q + Q R K L R+ Sbjct: 79 VEPSKDRVEPRCPVARQCGGCQLQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECG 138 Query: 114 --------------------HDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS 153 + + PW YR +A+ K ++ GF + Sbjct: 139 SEDEGAGTGERAGADGRKIVRMEPIMGMEEPWRYRNKAQFPFGMS-KDGRVITGFYAGRT 197 Query: 154 SDIVDVKQCPILAPQLEALLPKVRACLGS-----LQAMRHLGHVELVQATSG-----TLM 203 I++ + C + + +L VR + H G V G ++ Sbjct: 198 HSIIENEDCLLGVEENREILRIVREFMEEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMV 257 Query: 204 ILRHTAPLSSADREKLERFSHSEG-LDLYLAPDSEILETV--------SGEMPWYDSNG- 253 L D +ER +G + L ++E + G D G Sbjct: 258 CLVVNGRKLPKDEVLVERLRQVDGMTSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGD 317 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 ++ SP F QVN K+ ALE+ + E+ V DL+CG+G +L LA +A V G Sbjct: 318 VKYQISPLSFYQVNPAQTVKLYGTALEYAGLTGEETVWDLYCGIGTISLFLAQKAKKVYG 377 Query: 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF-DKVLLDPARAGAAGV 372 VE VP +E ++NA++NG++NV F+ EE + ++ K + D +++DP R G V Sbjct: 378 VEIVPQAIEDARRNAKINGIENVEFFVGKAEEVLPREFEEKQIYADVIVVDPPRKGCDEV 437 Query: 373 -MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 + I+K+ P R+VYVSC+ ATL RD + L + G+ + R+ DMF +GH+E++++ Sbjct: 438 CLDTIVKMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIMMQ 496 >UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8Z2_9FIRM Length = 455 Score = 423 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 125/442 (28%), Positives = 212/442 (47%), Gaps = 23/442 (5%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + + G GV + +G LF+ G+ E E+ VT+ +K + K+ R + Sbjct: 15 MKKNDRVIGVCSGYTHDGHGVVKIDGFPLFVKGMCEHEEGEIIVTQVRKGFGFGKLWRLM 74 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI-------ADV 123 S R P CP CGGCQ QH S Q R K + +MK + + Sbjct: 75 KKSEARVEPFCPVAKQCGGCQLQHVSYAEQLRFKKQKVIDVMKRIAQIDVEVLDVIGMEN 134 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 P YR + ++ + K Q+ GF + S+ I+D+ C I + ++ +L ++ L Sbjct: 135 PTFYRNKGQIPVGITNK--QVVTGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLLNKY 192 Query: 184 QAMRHLGHVELVQA-TSGTLMI--LRHTAPLSSAD---REKLERFSHSEGLDLYLAPDSE 237 Q H+ + A SG +M+ + ++ LS + +E +E + + + + + + Sbjct: 193 QNADLFRHLLIKDAFASGEVMVVWIVRSSKLSHKEEMCKELVENLPYIKSVIINVNTRED 252 Query: 238 IL------ETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRV 290 + + G D+ L S R F QVN +++ +ALE+ + ++ V Sbjct: 253 NVILGKEEHVLYGNSYITDAIHDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEV 312 Query: 291 LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 +DL+CG+G ++ LA +A V+GVE V A + + NA+LN + N+ F + K Sbjct: 313 IDLYCGVGTISMFLAQKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKL 372 Query: 351 PWAKNGFDKVLLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 D V++DP R G + + I+K++P RIVYVSC+PATLARD + L + GY Sbjct: 373 EKQGKKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQ 432 Query: 410 RLAMLDMFPHTGHLESMVLFSR 431 + +DMFP + H+ES+VL + Sbjct: 433 VVQPVDMFPFSFHVESIVLLQK 454 >UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4G9_9CHLA Length = 449 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 124/451 (27%), Positives = 197/451 (43%), Gaps = 36/451 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 Q I + + L SFG+GV + G T F+ G LP E + +TE KK Y R K+++ Sbjct: 2 NLQLHQQIDLFIRSLGSFGEGVGSYEGLTFFVEGALPDETVSIQITELKKNYGRGKLLKI 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEVIA 121 L+ SP+R TP CP F CGGCQ H Q K + ++ V + Sbjct: 62 LTPSPDRATPPCPIFRQCGGCQLMHLGYPKQLEMKRQIVLNALERIGHLKNISIDPCVSS 121 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 YR + +L + + K L +G S I+ V C I Q E + V L Sbjct: 122 PQELEYRNKIQLPV--MMKPDGLTVGLYARNSHTIIPVDHCLIHCEQGENVYQSVLKLLK 179 Query: 182 S-----LQAMRHLGHVELVQA----TSGTLMILRHTAP-----LSSADREKLERFSHSEG 227 G + + + +++ T+ L + ++ ++ +G Sbjct: 180 QSDIAPYDERTGKGVLRHLLIKSALQTSESLVILVTSQEKCTSLQALAQQIMQACPEVKG 239 Query: 228 LDLYLAPDSEIL------ETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + + + + T++G+ + SP F QVN + + L Sbjct: 240 VIQNINRKRDNVILGTDWHTLAGKSYIREMICDHHFHISPSAFFQVNPAQAESIYQHVLS 299 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 D+ LD FCG+G TL A QA +G+E VP +E NA+LN + N FY Sbjct: 300 LADLDKTKTFLDAFCGVGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYC 359 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVSCNPATLARDSE 399 ++ E + D V L+P R G + +K+ +P I+Y+SC+PATLARD + Sbjct: 360 DHAESKIQSL----KDIDVVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLK 415 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 L++ GY I ++ DMFP T H+E++V + Sbjct: 416 ILVQHGYQIEQVTPFDMFPQTAHVETVVKLT 446 >UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH77_MOOTA Length = 473 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 200/473 (42%), Gaps = 66/473 (13%) Query: 19 VSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 +++ L+ G G+ +G+ +F+PG LP E V V K+ YAR ++V + SP+R Sbjct: 5 ITIIGLNHEGAGIGHLQDGRVIFVPGALPGEQVLVEVVSVKRNYARGRLVEVVEASPDRV 64 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIADVPWGYRR 129 P CP CGGC QH Q K + ++ + + PWGYR Sbjct: 65 LPPCPEAASCGGCDLQHLDYRAQLHWKRRLVIDALQRLGHLRDIPVLPVLGMANPWGYRN 124 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 + RL + + ++GF + GS ++ CP+L P L + L L L Sbjct: 125 KVRLHVR------RGRLGFYRPGSHELAPFSCCPLLPPGLLKAARAIVRLLPEL--PPGL 176 Query: 190 GHVELVQA-TSGTLMILRHTAPLSSADREKLE----RFSHSEGLD--------------- 229 HV L Q +G L+++ P DRE E RF G+ Sbjct: 177 QHVTLRQGLATGELLVVLEALPGWQGDRELAEKLAGRFPELVGVVSLAGGGRSRSGPKDF 236 Query: 230 ----------LYLAPDSEILE-----------------TVSGEMPWYDSNG-LRLTFSPR 261 E T+ G + G LR S Sbjct: 237 AGEPALECSGWVKTGGKEARRARYQEGFVPRRLGGRPFTLYGRDYLEERLGDLRFYISAT 296 Query: 262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321 F QVN+ + + +A + +Q + VLD +CG G L L+ QA V GVE VP + Sbjct: 297 TFFQVNSAQAEVLYNKAATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGVEVVPEAI 356 Query: 322 EKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLE 380 ++N+ LN L NV F E + + + ++LDP RAG V+ + +E Sbjct: 357 VDARRNSILNNLANVHFRTGAAEAVLPRLAGKGYRPEVIILDPPRAGCDRRVLAAVATME 416 Query: 381 PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 P R+VY+SCNP+TLARD L +AG+ + +DMFPHT H+E + + Sbjct: 417 PRRVVYISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVKER 469 >UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APX5_PELPD Length = 446 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 134/435 (30%), Positives = 210/435 (48%), Gaps = 22/435 (5%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 +S++ L G GV R +GK F+P P + V +T +K+ Y A+++ ++ +R T Sbjct: 10 ISIDRLAFGGSGVGRIDGKVCFVPFACPGDELLVRITAEKRSYLTARIISIVTPGQDRIT 69 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIADVPWGYRRR 130 P CP FG CGGC QH + Q K A + V + + +GYR R Sbjct: 70 PPCPLFGSCGGCSWQHIAYHRQLEEKRRIFADALWRGARAPGELVADVVASPLTYGYRSR 129 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDV-KQCPILAPQLEALLPKVRACLGSLQAMRHL 189 + L+ L++GF + G+ + D + CPI P + +L +R L + + Sbjct: 130 VQFKLH--GAGPNLRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPDPTKI 187 Query: 190 GHVELVQATSGTLMILRHTAPLSSAD----REKLERFSHSEGLDLYLAPDSEILETVSGE 245 + L A G ++I+ + RE+ + + L L S + + + Sbjct: 188 PQINLECAEKGAVVIVNYIGDDHQGAKAFFRERAAQLEQATALYLQTGRKSTLQKVFGDD 247 Query: 246 MPWYDSNG-------LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + Y G LT+ P F QVNA N ++ E+ D + +D++LDL+CG G Sbjct: 248 LLQYSQEGESSTAPACSLTYRPGGFAQVNAAQNSALLRLVREFADCRRDDQILDLYCGNG 307 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 NF+LPLA A+V G+E + + NARLNG+ NV F + K F Sbjct: 308 NFSLPLARGVAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAGKLMGDGRRFP 367 Query: 359 KVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 ++LDP R+GAA +++ I +L +I+Y+SC+P+TLARD L GYT+ +DMFP Sbjct: 368 TIILDPPRSGAADLLEHIPRLGADKIIYISCDPSTLARDCGVLFGKGYTVVSSVPVDMFP 427 Query: 419 HTGHLESMVLFSRVK 433 T HLES+ L R Sbjct: 428 QTFHLESVTLLRRRN 442 >UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus RepID=A8YU02_LACH4 Length = 450 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 115/451 (25%), Positives = 198/451 (43%), Gaps = 30/451 (6%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 QII + + DL GVA +NG T+F+ LP E + + KK +A AK+ + Sbjct: 1 MEKNQIIDLEITDLSYEAMGVAHYNGMTVFVTNALPGEVVSAKILKVKKNFAFAKIEKIK 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI-------ADV 123 +SP+R + G H D Q K + L+K E I + Sbjct: 61 KESPDRVNVKLNQGVQSGLASLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPE 120 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 GYR +A++ + + QL++GF + S D++ + P+++ +L VR L Sbjct: 121 EVGYRNKAQVPVREV--NGQLEIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKY 178 Query: 184 QAMRH-----LGHVELVQAT----SGTLMIL-RHTAPLSSADREKLERFSHSEGLD-LYL 232 + + G V ++ +G +M++ S G+ L L Sbjct: 179 KVPAYDEINNNGEVRYLEVRRSKSTGEMMVILVCLHKDFMQLPNVAAEVSQIPGVSGLIL 238 Query: 233 APDSEILETVSG---------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + + + G + L+ SP+ F Q+N+ ++ A++ D Sbjct: 239 NHNPKKTNVILGPKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQAD 298 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 ++P+D V+D + G+G L +A +V G+E V ++ + NA+LN + N +Y Sbjct: 299 LKPDDVVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKA 358 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 EE + + + D V +DP R G + +K P +IVY+SCNPATL RD + Sbjct: 359 EEIMPRWAKSGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQ 418 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 + Y R+ +DMFP T H+ES+ + R + Sbjct: 419 EKSYEFNRIDPVDMFPQTPHVESVTVLERTE 449 >UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Pseudomonadaceae RepID=B3PL62_CELJU Length = 485 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 159/446 (35%), Positives = 234/446 (52%), Gaps = 20/446 (4%) Query: 3 QFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYA 62 + + +++ + ++ G+G+A +GKTLF+ G + E + ED ++A Sbjct: 37 RREQPQPLQRNKRLGELLIDRFSHDGRGLASLDGKTLFVDGAIAGETVTARLLEDHPRFA 96 Query: 63 RAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------D 115 A+V + SP+R P C H+ CGGCQ QH + Q K + + Sbjct: 97 EARVEDVILASPDRVEPPCAHYATCGGCQLQHLKPEAQLLMKQQVVLEQVHRWGGLTPKR 156 Query: 116 VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPK 175 V + GYR RARL + Y + +GFR+ + +++ C +L P L L+ Sbjct: 157 VLPPLRSESLGYRSRARLGVWYEA-DSSVTLGFRQQQRKTLTNIESCSVLLPALNRLIGP 215 Query: 176 VRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD 235 +R L + A + + H+ELV A SG +I+RHT PL + R+ L + E ++L P+ Sbjct: 216 LRQWLQARVANKAVTHIELVAAQSGPAVIVRHTKPLVALQRQALAELAQRESCQVWLEPN 275 Query: 236 -SEILETVSGEMP----WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRV 290 ++ L + G D GL L F P+DF QVN VN +MV +ALE L D V Sbjct: 276 GNQGLTDLEGSPVDPHLVLDVAGLPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLV 335 Query: 291 LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED-VTK 349 LD FCGMGNFTLP+A++ A V+G+E V +V + Q NA GL N+ F +L + + Sbjct: 336 LDFFCGMGNFTLPMASRVARVIGLEVVEPMVTRAQANATRLGLDNLEFLKADLSQMDSPR 395 Query: 350 QPWAKNGFDKVLLDPARAGAAGVMQQIIKLE------PIRIVYVSCNPATLARDSEALLK 403 + +LLDP R GA ++ Q+ L RIVYVSCNPATLARD+ L + Sbjct: 396 LRQLCSQASAILLDPPRDGAKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAE 455 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLF 429 AGY + L ++DMFPHT H+ESM LF Sbjct: 456 AGYGLDALGVMDMFPHTSHVESMALF 481 >UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZT5_DESAS Length = 458 Score = 420 bits (1079), Expect = e-116, Method: Composition-based stats. Identities = 125/454 (27%), Positives = 204/454 (44%), Gaps = 33/454 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 II + +ND++ G GV R++G +F+P E T+TE KK +A A +V+ Sbjct: 7 PVKVNDIIELQINDINHQGAGVGRYHGFAVFVPFTCVGEIILATITEIKKSFAAASLVKV 66 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIA 121 L S R+ C + CGGCQ QH+S Q + K + +K + + Sbjct: 67 LKSSDNRQIHSCSEYMKCGGCQLQHSSYAEQLKLKEKFVRDNLKRISGLPDAVVLPTIGM 126 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCP-ILAPQLEALLPKVRACL 180 + PW YR + L K + +GF GS +V+ C I +L + + + Sbjct: 127 ENPWNYRNKIHLHAG--RKNNRTVLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLI 184 Query: 181 GSLQAMRHLGH--------VELVQAT-SGTLMILRHTAP-----LSSADREKLERFSHSE 226 + + H V L +A +G +M++ T S+ RE + + Sbjct: 185 NKYKLEPYNKHSKKGLLRGVMLRKAEATGQVMLVLVTVSGNLPGQSTFTRELVNQCPDIT 244 Query: 227 GLDLYLAPD------SEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARAL 279 + + + + + G+ D L S F Q+N K+ +AL Sbjct: 245 SIIRNINNGNNSLLLGSVNKLIWGKEIIVDKIKDLSFYISANSFYQINPKQTIKLYDKAL 304 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 E+ +++ + VLD +CG+G + + A V G+E + V+ ++NA LN L NV F Sbjct: 305 EYAELKGNETVLDAYCGIGTIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFL 364 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDS 398 +E+ + + N D ++LDP R G V++ I K+ +I+YVSCNP TLARD Sbjct: 365 CGEVEKLLPEFAERNNNVDIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDL 424 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 L K GY I + +DMFP T H+E S++ Sbjct: 425 GLLDKLGYGIIEVQPVDMFPQTSHIEICTFLSKI 458 >UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 Tax=Psychromonas RepID=RUMA_PSYIN Length = 444 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 190/443 (42%), Positives = 270/443 (60%), Gaps = 13/443 (2%) Query: 1 MAQFYSAKRRTTTRQII--TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58 MAQF+ A + + I + V LD G+G+A K LFI G L E EV + E K Sbjct: 1 MAQFFKAAPTNSIKNHILKNIKVEKLDHRGRGLAYFQNKPLFIDGALAGELLEVQIVESK 60 Query: 59 KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--- 115 K+Y++ K+ + + S R T CPH+ CGGC QH + Q + KS L L + Sbjct: 61 KRYSKGKIKKIIKASELRITAACPHYQECGGCDLQHLNQAAQIQIKSDGLLSLFQRFAKK 120 Query: 116 ----VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 + + I D W YRR AR L + K +QL+MG R+A S++++D K CP+L P+LE Sbjct: 121 VPQQLEKPIIDKAWEYRRTARFGLQFDKKNKQLKMGLRRAQSNELIDQKVCPVLLPELEC 180 Query: 172 LLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 L+P ++ L SLQ HLGHVEL+ A G +++LRH L+S D + + FS + ++ + Sbjct: 181 LIPPLKILLNSLQCKAHLGHVELLYADQGAVVLLRHMKTLTSPDLQLITAFSALQKVNFF 240 Query: 232 LAPDSEILETVSGE---MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 S ++GE L+F+P DF+QVN+ +N+KMV++A++WL ++ D Sbjct: 241 GQASSNQSVCLAGEANLSYRLPEWDCSLSFTPTDFLQVNSDINKKMVSQAMQWLALEKND 300 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL-EEDV 347 VLDLFCG+GNFTLP+A Q SVVG+EGV +V++ NA+LN LQN FY +L E++ Sbjct: 301 SVLDLFCGLGNFTLPIARQVESVVGIEGVQQMVDRATANAQLNNLQNARFYQADLSGENL 360 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 +Q WA F+KVLLDPARAGA + I + +P I+YVSC+P TLARDS+ LL GY Sbjct: 361 IEQEWANQNFNKVLLDPARAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYK 420 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 + +L +LDMFP T H+ESM LF+ Sbjct: 421 LDKLGLLDMFPQTAHMESMALFT 443 >UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chromatiales RepID=D0L0T9_HALNC Length = 442 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 164/440 (37%), Positives = 242/440 (55%), Gaps = 14/440 (3%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 ++ + + L G+GV+ +GK FI LP E T KK + V Sbjct: 2 RKPKLPKGEFQAQIESLTLEGRGVSHIDGKATFIGRALPGETVRFIYTNRKKHFDEGDTV 61 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADV 123 SP+R TP CPHF CGGC QH + + Q +K L R+ K + V+ + Sbjct: 62 AVEQTSPDRITPPCPHFDQCGGCSMQHLTSEKQLATKEQALLDQLQRIGKVSPATVLPAL 121 Query: 124 P---WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 WGYRR+ARL + Y+ K ++ +GFR+ + + D++ C +L P++ L ++ + Sbjct: 122 ARANWGYRRKARLGVKYVQKKGRVIVGFRERHTHFLSDLQNCRVLDPRVGERLTEIGEII 181 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD-SEIL 239 SL+A + +E+ ++ R+ PLS +D+EKL F EG D+YL P ++ + Sbjct: 182 HSLEARERIPQIEVACGDDRVALVFRNLDPLSQSDKEKLRNFGTQEGFDIYLQPGSNDSV 241 Query: 240 ETVSGEM-----PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 + + S + + F+P DFIQ+N VN+ M+ +ALEWLDVQP D VLDLF Sbjct: 242 HPLDKAHVAPLTYAHPSFDVSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDHVLDLF 301 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 G+GNFTLP+A +AA V VE +V++G Q+A NG+ N NL E W + Sbjct: 302 AGLGNFTLPIARKAAKVTAVELDEHMVKRGAQSAAANGITNTEHVIGNLFEPDPTHLWMQ 361 Query: 355 NGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYTIARLAM 413 +D+VLLDP RAGA +M I + P RIVYVSC+P +LARD+ L+ + GY + + Sbjct: 362 QTYDRVLLDPPRAGAEAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIAAGV 421 Query: 414 LDMFPHTGHLESMVLFSRVK 433 +DMFPHT H+ESM +F R K Sbjct: 422 MDMFPHTSHIESMAVFERAK 441 >UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Cyanobacteria RepID=Q2JP08_SYNJB Length = 464 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 127/458 (27%), Positives = 202/458 (44%), Gaps = 40/458 (8%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARH----NGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 ++ + V L G G+A G+ +F+ +P + +TE K+ Y + Sbjct: 12 PVKPGDLLALEVTALTPQGDGIAHTVGLGQGRVVFVSQAVPGDQVVAQITEIKRNYLVGR 71 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVS 117 + +S SP+R P C CGGCQ QH S Q +K L ++ V Sbjct: 72 IRSLISPSPQRVRPACIVADKCGGCQWQHVSYAQQLATKQQILRDALERIGGLTLPQPVP 131 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + + P YR + + P+ Q L+MG+ + GS +V++ QCP+ +L+ L +++ Sbjct: 132 ILGSQQPLRYRNKVTYPMAK-PEGQPLRMGYYQRGSHRLVNLNQCPVQDERLDVFLREIK 190 Query: 178 ACLGS-----LQAMRHLGHVELVQATSG---------TLMILRHTAPLSSADREKLERFS 223 L RH GH+ + G + R L S ++R+ Sbjct: 191 RDLQETGWSVYDESRHQGHLRHLGLRIGRRTREVLLTLVSCSRRLPHLESWAERWMQRYP 250 Query: 224 HSEGLDLYLAP-------DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA 276 G+ L L E + G L F QVN + Sbjct: 251 DLVGVCLNLNSARTNAIFGPETEVIAGRGSLREEFAGFSLWIDSTSFFQVNTEQAEAFFT 310 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 + L+++ E+ +LD +CG+G TL LA +A +GVE +P V + + NA+ NG+ + Sbjct: 311 WIADQLNLRGEETILDAYCGIGTLTLLLAQRAKRAMGVEALPEAVAQARYNAQFNGIASA 370 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVSCNPATLA 395 F+ +E+ + P A D V+LDP R G + + +KL P RIVY+SC+PATLA Sbjct: 371 QFFQGTVEQVLPTLPPA----DIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLA 426 Query: 396 RDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSRV 432 RD + LL G Y + + D FP TGH+E + RV Sbjct: 427 RDLQILLAEGSYRLTQWRAADFFPQTGHVEGVAFLERV 464 >UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 n=40 Tax=Clostridia RepID=Y1941_CLOTE Length = 456 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 112/454 (24%), Positives = 197/454 (43%), Gaps = 35/454 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + +++ +++ G+A H G +++ +P + +T KK +A+ K++ L Sbjct: 3 MRKGKEYELNIEEIEFPSMGIAYHEGLKVYVKHGIPGQKVLARITTKKKDHAKGKIIEVL 62 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADV 123 D P + +CP FG CGGC Q + Q K + L K + + Sbjct: 63 EDLPYKIEAKCPAFGQCGGCAHQDIPYEKQLEIKQHEILELFKKANLDGFDFLPIEGSPK 122 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAG-SSDIVDVKQCPILAPQ----LEALLPKVRA 178 + YR + + L K +L +G G S I+ +C I+ L A L R Sbjct: 123 QYEYRNKMEFTFGDLKKGGELNLGMHAKGMSFGIISADECKIVDEDYRNILNATLNYFRE 182 Query: 179 C-LGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREK-------------LE 220 L + M G++ + +G +++ T + ++ L Sbjct: 183 KQLPHYRIMAREGYLRNLVIRKAENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKGNLV 242 Query: 221 RFSHSEGLDLYLAPDSEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 H+ L + L + G + D GL+ +P F Q N+ +K+ + Sbjct: 243 GILHTINDSLSDVVQCDKLNILYGRDYIIEDLLGLKFKITPLSFFQTNSKGAEKLYSIVR 302 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 +++ V DL+CG G +A +A V+G+E + VE ++NA+LN L N F Sbjct: 303 DFIGESKSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFI 362 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDS 398 ++ + + + K D ++LDP R G ++ +IK + IVYVSCNP TL D Sbjct: 363 AGDIAQVIKEV---KQKPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDL 419 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + L++ GY I ++ +DMFP T H+E++V R Sbjct: 420 KVLVENGYVIEKVKGMDMFPSTPHVETVVGLRRK 453 >UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRP4_DESVM Length = 479 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 118/477 (24%), Positives = 191/477 (40%), Gaps = 52/477 (10%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + ++ ++V+ L + G+ V RH G+ +F+ G LP + +T K+++A A Sbjct: 1 MSDTTPRPGDLLELTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEAT 60 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVS 117 + L SP + P C HFG CGGC Q Q R K + + + Sbjct: 61 LDAVLEPSPVQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLP 120 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + + G+R + + + + QL +G R+ S +VD+ +C + P ++ VR Sbjct: 121 ILASPAERGFRNKMEFAFSQD-RDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVR 179 Query: 178 AC-----LGSLQAMRHLGHVELVQATS---------------------GTLMILRHTAPL 211 L R G + G +++ Sbjct: 180 ELARESGLPGWDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGR 239 Query: 212 SSADREKL--------ERFSHSEGLDLYLAPD------SEILETVSGEMPWYD-SNGLRL 256 + + RF G+ L D E + V GE + G L Sbjct: 240 HPGAAQAVSRLAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDL 299 Query: 257 TFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEG 316 P F Q N + A P+D V DL+ G+G L LA A +V G E Sbjct: 300 LLGPDSFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEI 359 Query: 317 VPALVEKGQQNARLNGLQNVTFYHENLEEDV-TKQPWAKNGFDKVLLDPARAGAAG-VMQ 374 P V + NA N + N +F ++ + ++P V++DP RAG V++ Sbjct: 360 TPEAVNDARANAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVE 419 Query: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + +P RIVYVSCNPAT+ARD+ GY + +D+FPH+ H+E + L +R Sbjct: 420 AVSAHQPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476 >UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Acinetobacter junii SH205 RepID=D0SQB6_ACIJU Length = 469 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 166/457 (36%), Positives = 245/457 (53%), Gaps = 28/457 (6%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARH----------NGKTLFIPGLLPQENAEVTV 54 + AK+R I T + G+G+A + +GK +FI L E + + Sbjct: 3 HKAKKRPVHHPIYTFDIEAFSHEGRGIAHYGTHPDHPKEKHGKKVFIRYALVGETVKAKI 62 Query: 55 TEDKKQYARAKVVRRLS-DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK 113 T + A+++ S S +R P C HFGVCGGC QH D Q K L ++ Sbjct: 63 TNQTTRLEEAEMITLESDASEQRVAPVCAHFGVCGGCSLQHIHPDQQIVLKQNVLKSHLE 122 Query: 114 HD-------VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 H I V YRRRAR+ + Y+PK +L MGFR+ S+ + D++QC +L Sbjct: 123 HFAGLQPEEWLAPIRSVKTDYRRRARIGVRYIPKQNRLVMGFREHHSNHLTDIQQCKVLD 182 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE 226 L L +++ L SL H+GH+EL +++RH L+ +D +L +F+ + Sbjct: 183 QVLSDSLVELKTLLESLTGKAHIGHIELAMGDDEVSLLIRHLDELNVSDVNQLRQFTLLK 242 Query: 227 GLDLYLAPDS-EILETVSGEM------PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 G LY + L V E + ++ FSP DF QVN+ VN +MV A Sbjct: 243 GWQLYFQSKGIDSLHRVDDEHAPMRLHYSLEDFKVKFAFSPLDFTQVNSHVNARMVQLAC 302 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNV 336 E LD++ +RVLDLFCG+GNF+LPLA V+GVE +VE+ +NA+ N L Sbjct: 303 ELLDLKEGERVLDLFCGLGNFSLPLARCVGETGRVIGVEASDEMVERATENAQANYLTQA 362 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLAR 396 +F+ ++L +D + WAK GFD +L+DP R+GA VMQ + RIVYVSCNP+TLAR Sbjct: 363 SFFSQDLTKDFSHHSWAKQGFDALLIDPPRSGAYEVMQYVPNFGAKRIVYVSCNPSTLAR 422 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 D+ L + GY + + A++DMF HT H+ES+ LF +++ Sbjct: 423 DAGVLAQYGYQLKKAAVMDMFTHTEHVESIALFEKIE 459 >UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M217_GEOSF Length = 437 Score = 416 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 137/438 (31%), Positives = 218/438 (49%), Gaps = 24/438 (5%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + + V++ L + G G R +GK F+P P + A V +T +KK YA +++ +S S Sbjct: 2 RQVEVAIEKLANGGAGFGRCDGKAFFVPFTAPGDVARVRITCEKKSYAEGELIELVSSSA 61 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIADVPWG 126 R P CP FG+CGGC QH Q K+ A L+ + + A P+G Sbjct: 62 LRVKPPCPVFGICGGCNWQHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYG 121 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK-QCPILAPQLEALLPKVRACLGSLQA 185 YR R +L +NY + + ++GF + S +VD+ C I + L +R + Sbjct: 122 YRSRVQLKVNY--QGGKTRLGFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPD 179 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLY----LAPDSEILET 241 ++ +++ + ++ ++ + A S A+ + H E DL + + Sbjct: 180 PGNISQIDIARGDDESISVIVNHAGASVAEVSEY-LLQHREISDLIGSMFIRHKNSTTSI 238 Query: 242 VSGEMPWYDSNG--------LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 E Y +G L FS F Q+N N +++ ++ + +++VLDL Sbjct: 239 FGAEHLSYRISGNTLPGGSEKTLFFSKDAFSQINYQQNMQLIRVVSDFAALTGKEKVLDL 298 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 +CG GNF++PLA +AA V G EG + ++NA NG+ N++F+ + V K A Sbjct: 299 YCGNGNFSIPLADKAAHVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKKLAAA 358 Query: 354 KNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 + FD V+LDP R GAA VM I L RI+YVSC+PATLARD L K G+ + + Sbjct: 359 RETFDVVVLDPPRNGAAEVMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQVINIQG 418 Query: 414 LDMFPHTGHLESMVLFSR 431 +DMFP T HLES+ L ++ Sbjct: 419 VDMFPQTYHLESVTLLTK 436 >UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae RepID=A4SRV1_AERS4 Length = 456 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 121/447 (27%), Positives = 197/447 (44%), Gaps = 30/447 (6%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + + +L G G R + LF+ GLLP E A V +TE K Y KV L Sbjct: 8 PLVGHQHQIEILELTDKGDGKGRLFDRPLFVEGLLPGEQALVELTEVKPNYLHGKVTELL 67 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADV 123 S +R CP+ CGGCQ + + Q + K A + ++ + + Sbjct: 68 QPSADRVADFCPN-TECGGCQVRPLAYPAQLKLKQALVQSALEQAGLGNTTVNPILGMES 126 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 P+ YR +A+ ++ + +GF + S D++ C + L +VR + Sbjct: 127 PFAYRNKAQYAVRGCEAGAE--IGFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREH 184 Query: 183 ----LQAMRHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 + H G V + G +++L + E L S L Sbjct: 185 DIAAYDEVNHTGCVRNLMTRKGFKSGELMVVLVTLGEALPFEAELLATLSDLPITTLVQN 244 Query: 234 PDSEILE--------TVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 + E + GE D L SP F Q N + + ALE+ ++ Sbjct: 245 INDERTNRILGANNRVLLGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYSSALEYAEL 304 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + V D++CG+G +L LA +AA VVG+E V + + ++NA LNG+++ F+ E Sbjct: 305 TGNETVFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAE 364 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 + + + D V++DP R G V+Q ++ + P R+VYVSCNP TLARD L+K Sbjct: 365 QLMPELYAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVK 424 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFS 430 G+ + + +DMFPH+ H+E++ S Sbjct: 425 QGFMLDEVQPVDMFPHSMHVEAVARLS 451 >UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22 Tax=Gammaproteobacteria RepID=RUMA_XANC8 Length = 444 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 168/447 (37%), Positives = 241/447 (53%), Gaps = 20/447 (4%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNG---KTLFIPGLLPQENAEVTVTED 57 MA+ R R ++ DL G+GVAR +G K FI G LP E T Sbjct: 1 MAR----SRNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTAR 56 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMK 113 + + AK V L SP+R PRCPHFGVC GC QH Q +K L R+ Sbjct: 57 SRHFDEAKTVEVLQASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGH 116 Query: 114 HDVSEVIA---DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLE 170 V+ WGYRR+ R S+ + K + +GFR+ + D+ C + PQ+ Sbjct: 117 VTPQTVLPALVGDTWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIG 176 Query: 171 ALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDL 230 +P++ A + + R + +E + + +RH PLS+ D + L F+ + + Sbjct: 177 EKIPQLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAI 236 Query: 231 YLAPDS-EILETVSGEMP----WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQ 285 +L P + + + + + L F P DFIQVNA +NQKM+A AL LD + Sbjct: 237 FLQPGGVDSVHPLWPQEVPLSFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAK 296 Query: 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 P+DRVLDLFCG+GNFTLPLA VVGVEG LV + ++NA+ NGL N FY +L + Sbjct: 297 PDDRVLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQ 356 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KA 404 D + W + GFDK+LLDP R+GA V+QQ+ + RIVYVSC+P +LARD+ L+ + Sbjct: 357 DQRQTAWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQ 416 Query: 405 GYTIARLAMLDMFPHTGHLESMVLFSR 431 G+++ +DMFPHT H+ES+ +F + Sbjct: 417 GFSLLSAGAMDMFPHTAHVESIAVFEK 443 >UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=20 Tax=Cyanobacteria RepID=Y1967_SYNY3 Length = 463 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 126/466 (27%), Positives = 215/466 (46%), Gaps = 37/466 (7%) Query: 1 MAQF--YSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58 M Q ++ ++ +++ L+ G+G+ R N + +F+P P + EV + + K Sbjct: 1 MTQSNNFATSPLWQQGSVVELTITGLNHQGEGIGRFNERVVFVPDTAPGDRLEVRLVKVK 60 Query: 59 KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---- 114 + YA A++++ L S +R P C CGGCQ QH Q SK + ++ Sbjct: 61 RNYALAQLLKILEPSVQRTRPSCIVADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGF 120 Query: 115 ----DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLE 170 + + GYR +A L+ KT Q+Q G+ + GS +V++ QCP+ +L Sbjct: 121 TTLPLEPLLQSPASLGYRNKATYPLSRS-KTGQVQAGYYRKGSHRLVNINQCPVQDDRLN 179 Query: 171 ALLPKVRACLGS-----LQAMRHLGHVELVQ----ATSGTLMILRHTAP-----LSSADR 216 LL +V+ + + + G + + +G +++ +A L Sbjct: 180 LLLTEVKKDIENRGWSIYDEEKKQGKLRHLSLRIGQRTGEMLLTLISAHKGLPDLEEQAG 239 Query: 217 EKLERFSHSEGLDLYLAPD------SEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAG 269 E LER+ G+ L + P+ + ++G + L + F QVN+G Sbjct: 240 EWLERYPDLGGICLNIQPEPNNRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSG 299 Query: 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR 329 + ++ R + L++Q + ++D + G+G FTLPLA Q + +E V +GQ+NA Sbjct: 300 AAELLLTRLQQALNLQGAELLVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAE 359 Query: 330 LNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVS 388 +N + NV F +E + D +LLDP R G V+++II+ P +I Y+S Sbjct: 360 INQIANVDFLAGTVETVLPTLSEI---PDVLLLDPPRKGCAPEVLREIIRQRPEKIAYIS 416 Query: 389 CNPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSRVK 433 C P TLARD + L G Y I + D FP T H+E V+ V Sbjct: 417 CQPPTLARDLKFLCAEGFYGITWVQGCDFFPQTAHVECAVILKAVN 462 >UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MPE3_9FIRM Length = 442 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 120/444 (27%), Positives = 202/444 (45%), Gaps = 23/444 (5%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + V ++ + G +A+ + LFIPGLL E A V +T+ KK YA A+V+ L Sbjct: 1 MKKNEEYVVEISGYTTEGFALAKLDSFVLFIPGLLRGEKARVALTKVKKTYAFARVIEIL 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA-RLMKHDV------SEVIADV 123 S +R P C +CGGCQ QH + Q K + ++H + + + Sbjct: 61 EVSEKRVKPSCSIARLCGGCQLQHMAYQEQLSLKQEIVQIHFLRHQLDLNRIHPILPSPK 120 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 YR + ++ + K Q+GF + S D+V + C + + + V+ L Sbjct: 121 QERYRNKVQVPI--QEKDGLAQLGFYRNHSHDVVVYEDCMVETEESNQITHFVKRFLNQH 178 Query: 184 QAMRHLGHVELVQATSGTLMILRHTAPLSSADR------EKLERFSHSEGLDLYLAP--- 234 + ++ + +++ ++ E ++ F + P Sbjct: 179 HLTSNFRYLFIRHIHQRNEVMVMPIVREYPFEKSKKLALELVKEFPNITSFSYLKNPKET 238 Query: 235 ----DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRV 290 D I E + G+ S + F QVN + + +ALE D+ ED V Sbjct: 239 NVILDGPIFEVIGPLFLEESLLGMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTV 298 Query: 291 LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 +DL+CG G + A A V+G+E VP ++ + NA+LN N+ F+ + ++ K Sbjct: 299 VDLYCGTGTIGILAAKIAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKI 358 Query: 351 PWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 K D V++DP R G + +Q I K+EP ++VY+SC+P+TLARD E L G+ + Sbjct: 359 VETKESIDVVIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVE 418 Query: 410 RLAMLDMFPHTGHLESMVLFSRVK 433 + +D+FP T H+E + L RVK Sbjct: 419 TVQPVDLFPQTVHVECIALIQRVK 442 >UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=6 Tax=Geobacter RepID=Y1748_GEOSL Length = 438 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 141/434 (32%), Positives = 202/434 (46%), Gaps = 23/434 (5%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + L G G R GK F+P P + + V DK Y + + L SP+R Sbjct: 6 IRIESLAFGGAGFGRLEGKACFVPFTAPGDLVRIRVAVDKPSYLEGETLEILEPSPDRIA 65 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--------VSEVIADVPWGYRRR 130 P CP FG+CGGC QH D Q +K + +AD P+GYR R Sbjct: 66 PPCPVFGICGGCSWQHLRYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVADNPFGYRCR 125 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVD-VKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 A+ + + +L MGF + GS ++D +C I P + L +R L + Sbjct: 126 AQFKIRWS--GGRLHMGFYRRGSHYVIDAPAECVICDPAINLTLRDLRLVLPDFSEPDKI 183 Query: 190 GHVELVQATSGTLMILRH---TAPLSSAD--REKLERFSHSEGLDLYLAPDSEILETVSG 244 ++ G ++++ H P +AD R + G+ L I+ Sbjct: 184 PQIDAATGEDGHVLLVVHYIGDNPGRAADFFRSIQPHLASVTGIHLQCGRKDSIMHVWGV 243 Query: 245 EMPWYDSNGL-------RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 + Y GL L+F F QVN N+ +V++AL V P RVLDLFCG Sbjct: 244 DSLSYTVPGLGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGVGPGRRVLDLFCGN 303 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGF 357 GNF+LPLA+ A +VGVE ++ ++NA NG+ +V F + + + A F Sbjct: 304 GNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGEHF 363 Query: 358 DKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 D V+LDP R GA + ++ L P RIVYVSC+P TL RD L KAGY + +DMF Sbjct: 364 DTVILDPPRTGARDAVGEVAILAPERIVYVSCDPPTLGRDLGVLRKAGYRVVGSHGVDMF 423 Query: 418 PHTGHLESMVLFSR 431 P T H+ES+ L R Sbjct: 424 PQTYHIESVTLLIR 437 >UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D234_PELTS Length = 470 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 118/465 (25%), Positives = 200/465 (43%), Gaps = 44/465 (9%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + I + ++ ++ G+GV R+ G +F+PG P + V++ KK YARA+++ Sbjct: 8 PVQKNERIVLQISGINHSGEGVGRYRGLAVFVPGAAPGDQVVAEVSDVKKNYARARLLGI 67 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEV----IA 121 + SP R P C F CGGC+ QH + Q K +LAR+ + +V Sbjct: 68 KTASPARREPECGRFSRCGGCRLQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGM 127 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIV--------DVKQCPILAPQLEALL 173 + PW YR + + + ++ +GF + G+ ++ C ++ +L L Sbjct: 128 EHPWHYRNKVHFQV--EERPDKIALGFYEEGTHNLTAFFNEGACPGTGCLLVDDELNKLA 185 Query: 174 PKVRACLGS---------LQAMRHLGHVELVQAT----SGTLMILRHTAPLS-----SAD 215 + L L R + +G +M + T + Sbjct: 186 ALIEKLLNRHRGPFGRRILPQKRQSRFFRHIVLRKGFFTGEVMAVLVTGSGEWPGEKAFV 245 Query: 216 REKLERFSHSEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNA 268 +E L L + + ++G D G L SP F QVN Sbjct: 246 KELLSLRPGLVSLVRNINDGPPGVLFGKKSRCLAGREHIKDRLGHLIFRISPSSFYQVNP 305 Query: 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA 328 + + ++ + + V+D + G+G+ L LA +A V G+E +P V ++NA Sbjct: 306 VQTLVLYNKVQQYAALTGRETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNA 365 Query: 329 RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYV 387 LN + N F +E + + V+LDP R G V++ +++++ R+VYV Sbjct: 366 ALNKITNAEFLTGKVESLIPILAAQGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYV 425 Query: 388 SCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 SCNPATLARD GY + + +DMFP T H+E +VL SR+ Sbjct: 426 SCNPATLARDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSRL 470 >UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHU9_9CLOT Length = 467 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 116/451 (25%), Positives = 197/451 (43%), Gaps = 31/451 (6%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 QI + + DL+S G GV + +G +F+P + E + + KQYA V R Sbjct: 13 PIQKNQIHRLEITDLNSDGNGVGKIDGFVVFVPMTAVGDLIEAKIVKVLKQYAFGIVERI 72 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIA-------D 122 LS SP+R CP + CGGC +H + + K + + + Sbjct: 73 LSLSPDRIDNDCPVYRQCGGCSLRHIRYEAELDIKRRQVEACFRRIGGIDLTVERILSNP 132 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC--- 179 GYR +A+ + + + GF S +V C + +P L+ + Sbjct: 133 HTEGYRNKAQFPVA--LRDGKAVAGFYAKRSHRVVPCGDCRLQSPAFAPLVRVILDFIDE 190 Query: 180 --LGSLQAMRHLGHVELVQAT----SGTLMI-LRHTAPLSSADREKLERFS--HSEGLDL 230 L H G + + +G +M+ L T + E R + + + Sbjct: 191 YHLPPYDETNHTGLIRNLYLREAPATGEIMVCLVATKKHIPSADELARRLVACNPKVKSV 250 Query: 231 YLAPDSEILETV--------SGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEW 281 + +S+ + G+ +D G+ + SP F QVN+ +++ A E+ Sbjct: 251 LVNRNSQKTNVILGDRCSVVWGKPVIHDVLRGVDVELSPLSFYQVNSLQAERLYDLAEEY 310 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 + E+ ++DL+CG G L +A +A V+GVE +P VE +++A+ NG++N F Sbjct: 311 AHLTGEETLVDLYCGAGTIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCA 370 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + +E D V++DP R G V+Q I ++ P RIV +SCNPAT ARD Sbjct: 371 DAKEAARSLAQQGLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAARDCGL 430 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L + GY + +A D+F T H+E ++ + Sbjct: 431 LQQQGYRVEEVAAADLFSRTLHVECVISLVK 461 >UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58 Tax=Betaproteobacteria RepID=RUMA_BORA1 Length = 476 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 165/431 (38%), Positives = 230/431 (53%), Gaps = 19/431 (4%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + LD +G+AR +GK +F+ G LP E K Y A+V L+ S +R Sbjct: 6 LKIESLDLEARGIARRDGKVVFVEGALPGERVYAATVRRKPSYEIARVETVLTPSSQRVE 65 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGYRRRA 131 PRCPHFGVCGGC QH Q K AL H V + WGYR RA Sbjct: 66 PRCPHFGVCGGCAMQHLEPTSQVAIKQRALEDTFWHVGKIRPQRVLPPLHGPTWGYRYRA 125 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGH 191 RLS+ +PK + +GF + SS + D+++C +L + LL +RA + +L + Sbjct: 126 RLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLLPLRAMIAALSRPERIPQ 185 Query: 192 VELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS----EILETVSGEM- 246 +E+ T ++LRH PL+ D L F+ + +L L+ G+ Sbjct: 186 IEVALGEGVTALVLRHIEPLNDHDITVLRDFAARHNVQWWLQSKGPDTVHPLDPAHGDTL 245 Query: 247 -PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 GLR+ + P DF QVN +N+ MV+RAL+ L+VQP DRV DLFCG+GNFTLPLA Sbjct: 246 AYTMPEFGLRMPYRPTDFTQVNHAINRSMVSRALKLLEVQPTDRVADLFCGLGNFTLPLA 305 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 TQ VGVEG AL ++ + A +GL+ F NL E FD++L+DP Sbjct: 306 TQGREAVGVEGSKALTDRALEAAARHGLEGRTRFATLNLFEVDVSWLRGLGYFDRMLIDP 365 Query: 365 ARAGAAGVMQQIIKL----EPIRIVYVSCNPATLARDSEALL-KAGYTIARLAMLDMFPH 419 R GA V Q + +L P RIVYVSCNPATLARD+ ++ + GY + +++MFPH Sbjct: 366 PREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVHEGGYVLKAAGVINMFPH 425 Query: 420 TGHLESMVLFS 430 TGH+ES+ +F Sbjct: 426 TGHVESIAVFE 436 >UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) n=3 Tax=Acinetobacter RepID=C0VPT5_9GAMM Length = 463 Score = 413 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 165/455 (36%), Positives = 238/455 (52%), Gaps = 28/455 (6%) Query: 5 YSAKRRTTTRQIITVSVNDLDSFGQGVARH----------NGKTLFIPGLLPQENAEVTV 54 + AK+R + I T V G+G+A + GK +FI L E + + Sbjct: 3 HKAKQRQAHQPIYTFKVEAFSHEGRGIAHYGTHPDHPKEKQGKKVFIRNALVGETVQAKI 62 Query: 55 TEDKKQYARAKVVRRL-SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK 113 T + A++++ + R P CPHFG+CGGC QH D Q K L ++ Sbjct: 63 THQTTRLEEAEMLKLEGEAATGRVEPICPHFGICGGCSLQHIHPDEQILLKQNVLQSHLQ 122 Query: 114 HD-------VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 H I YRRRAR+ + Y+P+ +L MGFR+ S+ + + QC +L Sbjct: 123 HFAGLQPEQWLTPIRSSKIDYRRRARIGVRYIPRQDRLVMGFREHHSNHLTTIHQCKVLD 182 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE 226 L +P++R CL L A H+GHVEL +++RH L+ +D L +F+ Sbjct: 183 QTLSDAIPELRKCLEGLMAKAHIGHVELAMGDHEVALLIRHLEELNVSDVNHLRQFALQR 242 Query: 227 GLDLYLAPDS-EILETVS------GEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 LYL P + L V D +R FSP DF QVN+ VN +M+ A Sbjct: 243 QWQLYLQPRGADSLHRVDDVQAPMRLHYHLDDFDIRFAFSPLDFTQVNSAVNARMIQLAC 302 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNV 336 E L ++ +RVLDLFCG+GNF+LPLA V+GVE +V + +NA+ N L Sbjct: 303 ELLQLKEGERVLDLFCGLGNFSLPLARCVGDTGQVIGVEASDEMVLRATENAKANSLNQA 362 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLAR 396 F+ ++L +D + PWAK GFD +L+DP R+GA VMQ + RIVYVSCNP+TLAR Sbjct: 363 IFFSQDLTKDFSHHPWAKQGFDALLIDPPRSGAFEVMQYVPSFGANRIVYVSCNPSTLAR 422 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 D+ L + GY + + A++DMF HT H+ES+ LF + Sbjct: 423 DAGVLAQHGYQLKKAAVMDMFTHTEHVESIALFEK 457 >UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzyme n=18 Tax=Firmicutes RepID=Q03VV3_LEUMM Length = 464 Score = 413 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 117/465 (25%), Positives = 202/465 (43%), Gaps = 34/465 (7%) Query: 1 MA---QFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTED 57 MA + Y K Q I +V D+ G GV + + +F+ +P E V+VT+ Sbjct: 1 MAKANRVYKTKAPVAKNQEIEATVIDITYQGMGVVKVDNFPIFVVDAIPGEIVRVSVTKV 60 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD-- 115 K YA +V RR+ +S R G + + Q K + L K Sbjct: 61 LKSYAFGRVTRRIQESENRVQNANKIAITTGIAPLANLKYEAQLAFKQHQIEELFKKVNV 120 Query: 116 ----VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 + + P GYR +A++ + + +L+ GF + GS +V ++ I P+++ Sbjct: 121 DVDVAPTIGMENPTGYRNKAQVPVQMI--NGKLETGFYRRGSHRLVPIEDFYIQDPKVDE 178 Query: 172 LLPKVRACLGS-----LQAMRHLGHVELVQATSG------TLMILRHTAPLSSAD---RE 217 + R L + G + + A G ++I+ +T L ++D + Sbjct: 179 AVRITRDILRELGVSAYEEETKKGVIRHIMARRGYYSHELMVVIITNTKKLPNSDLIAEK 238 Query: 218 KLERFSHSEGLDLYLAPDSEIL------ETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGV 270 + + + + + ET+ GE +D G P F QVN Sbjct: 239 LSAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQLMGKDFVIGPNSFYQVNPQT 298 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 + A A E +++P D V+D + G+G TL +A + + GV+ V +E ++NA+ Sbjct: 299 TSTLYALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVEGAIEDAEKNAKN 358 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSC 389 N + N F + E + K + V +DP R G ++ + + P + VY+SC Sbjct: 359 NQITNAEFVLADAPEQMAKWADEGLKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISC 418 Query: 390 NPATLARDSEALLKAGYTIA-RLAMLDMFPHTGHLESMVLFSRVK 433 NPATLARD+ +L AG+ I + LD FP T H+ES+ +F + + Sbjct: 419 NPATLARDAVQILAAGFEIEGAVQPLDQFPQTTHVESITVFKKAE 463 >UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25 Tax=Pseudomonadaceae RepID=RUMA_PSEPF Length = 461 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 175/434 (40%), Positives = 241/434 (55%), Gaps = 10/434 (2%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 S + T + +S+ L + G+G+A GKT F+ G L E E V + A+ Sbjct: 16 SKAPQIPTGKKQRLSIERLANDGRGIAFFEGKTWFVLGALAGEEVEARVLGAHGKVVEAR 75 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSE 118 R S S R C H G CGGC QH + Q K LA + + + Sbjct: 76 TERVFSASELRRPAPCQHAGRCGGCSVQHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAA 135 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 + +GYRRRAR+++ + K ++L++GFR AGS DIV + +CP+L L+ ++ ++ Sbjct: 136 PLTGPEFGYRRRARIAVRWDSKAKKLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPE 195 Query: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI 238 L L + LGHVEL +S ++LRH APLS AD L+ F L+L + E Sbjct: 196 MLRRLSKPQALGHVELFSGSS-LAVLLRHMAPLSEADLTILKDFCAFHEAQLWLHGEGEP 254 Query: 239 LETVSGEM--PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + + L+L + P DFIQVNAGVN+ MVA+ALEWL ++RVLDLFCG Sbjct: 255 QPVDDAQSLGYHLEQWDLQLAYRPGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCG 314 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +GNF LPLA A VV VEGV +V++ NA N L N F+ +L + +T W NG Sbjct: 315 LGNFALPLAKAAREVVAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQPLTDAEWIGNG 374 Query: 357 FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 F VLLDP R GA V++++ L R+VYVSCNPATLARD+ L+K GY + R +LDM Sbjct: 375 FSAVLLDPPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDM 434 Query: 417 FPHTGHLESMVLFS 430 FP T H+E+M LF Sbjct: 435 FPQTAHVEAMALFE 448 >UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Colwellia psychrerythraea 34H RepID=RUMA_COLP3 Length = 469 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 167/467 (35%), Positives = 254/467 (54%), Gaps = 38/467 (8%) Query: 1 MAQFYSAK-RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59 MA ++ A + T+ Q +TV+V+ LD G GVAR K +FI G+LP E +V V E K Sbjct: 1 MANYFKAAVKPKTSNQRLTVTVDKLDMNGVGVARWQNKPIFIAGVLPDEIVDVKVIEQKS 60 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM------- 112 +YARAK++ S R P+C HFG+CGGC Q +++ Q K + L Sbjct: 61 KYARAKLISIDKQSASRVIPQCQHFGLCGGCDLQMLALEEQLLFKQQKITDLFSRSFSTQ 120 Query: 113 ---------KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCP 163 I PW YRR+AR+ + + K Q +GFR+ ++ + +K CP Sbjct: 121 NITPEINTAHLPWQAAIKSSPWHYRRKARIGVQFD-KNAQATIGFRQKSTNQLAAIKSCP 179 Query: 164 ILAPQLEALLPKVRACLGSLQAMRHLGHVELVQA-------------TSGTLMILRHTAP 210 +L L A+ P ++ L L +GH+E++QA + ++++R P Sbjct: 180 VLVEPLSAIFPLLKKLLAQLTVKSAIGHIEVIQADISDTSSADKIQKDNQVVVVVRQLKP 239 Query: 211 LSSADREKLERFSHSEGLDLYLAPDSEILETV---SGEMPW--YDSNGL-RLTFSPRDFI 264 ++ D + ++ + + ++ L G+ Y+ ++ FS DFI Sbjct: 240 MNDTDIGLWQLYAQRHCWHVIIDDGNKQLPLADIKGGDSFELSYELTDTSKVYFSSNDFI 299 Query: 265 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 Q+N VN M+++AL WL++ D VLDLFCG+GNF+L LA A VVGVEG+ +V+K Sbjct: 300 QINHQVNNAMISQALAWLNILATDNVLDLFCGLGNFSLALAKHAKRVVGVEGMQTMVDKA 359 Query: 325 QQNARLNGLQNVTFYHENLEEDVTKQPW-AKNGFDKVLLDPARAGAAGVMQQIIKLEPIR 383 QN+ +NGL N FY +L +PW FDKVLLDPARAGA + QI +L+ Sbjct: 360 TQNSLVNGLDNCQFYQADLNSHWLLEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIPC 419 Query: 384 IVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 ++YVSC+PATLARDS L+ GY + +++++DMF T H+E+M+LF+ Sbjct: 420 VLYVSCDPATLARDSAILVSKGYKLEKISLMDMFSQTKHVETMILFT 466 >UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=12 Tax=Chlorobiaceae RepID=Y009_CHLTE Length = 483 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 120/477 (25%), Positives = 195/477 (40%), Gaps = 49/477 (10%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLL-PQENAEVTVTEDKKQYAR 63 + R II +++ D + + G + + G+L P + + + K +Y Sbjct: 7 QQEIRYRKGDIIELTITDHAEKDKCFGKTTEGMGVMVSGILAPGDRVSAQIYKVKSRYLE 66 Query: 64 AKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEV 119 A+ + L SP+R P CP FG CGGC+ H S + Q R K +L + + +V Sbjct: 67 ARAIEVLEASPDRVEPVCPVFGSCGGCKWMHVSYEAQLRYKHKKVTDSLEHIGGFESPDV 126 Query: 120 IA----DVPWGYRRRARLSLNYLP-------------KTQQLQMGFRKAGSSD-IVDVKQ 161 YR + S + + K + +GF G+ + ++D+ Sbjct: 127 RPVLAAPDALHYRNKVEFSCSNMRYLLQSEIDSDQLAKPKTFALGFHAPGNFEKVLDLDT 186 Query: 162 CPILAPQLEALLPKVRAC-----LGSLQAMRHLGHVELVQ----ATSGTLMILRHT---- 208 C + + +L +R L A H G++ + LM+ T Sbjct: 187 CYLAKECMNRVLNVLRDFAIERGLEPYAAKAHEGYLRNLMLRYSERHEQLMVNIVTSWYD 246 Query: 209 APLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE---------MPWYDSNGLRLTFS 259 L A +E+LE + + L + +GE L S Sbjct: 247 KALMQALKERLEAAMPEQQMTLLNNVTTRKNTVATGEQEYVISGDGYVTERLGDLDFRIS 306 Query: 260 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 F Q N + + + + + PED V DL+CG G TL LA +G+E V + Sbjct: 307 ANSFFQTNTRQAETLYDQIIAVGGITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVES 366 Query: 320 LVEKGQQNARLNGLQNVTFYHENL--EEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQI 376 V+ + NA LNGL N F+ +L + + ++ DP RAG + + Sbjct: 367 AVKDAEMNAELNGLSNTVFFQADLKNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTM 426 Query: 377 IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 +KL+P RIVYVSCNP LARD + + GY + +DMFP T H+E++ F R + Sbjct: 427 LKLQPERIVYVSCNPDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFERAE 483 >UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E02 Length = 456 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 124/453 (27%), Positives = 198/453 (43%), Gaps = 33/453 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 K+R + ++++DL G GVARH G LF+ G +P + VT+ K+ Y A V Sbjct: 9 KQRPDRFAELELTIDDLAFGGNGVARHEGYVLFVHGAIPGDRVRAKVTKTKRDYGEAITV 68 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEV 119 L SP+R P H G Q + Q KS + ++ V Sbjct: 69 DVLEPSPDRIAPVADH----PGAPWQILPYERQLEIKSKQVDDALRRIGKLGGFELEPIV 124 Query: 120 IADVPWGYRRRARLSLN--YLPKTQQLQMGFRKAGSSD-IVDVKQCPILAPQLEALLPKV 176 A W YR + S + +L GF G D IV + C + + + A+ +V Sbjct: 125 PALETWRYRNKLEYSFGTEGTAERGELIFGFHAPGEWDRIVPIADCMLASERGNAVRDQV 184 Query: 177 RAC-----LGSLQAMRHLGHVE---LVQAT-SGTLMILRHTAPLSSADREKLERFSHSEG 227 A L + G + + + +G + T P DRE +G Sbjct: 185 LAFCREQGLTAYDRRTRRGFLRNCVIREGRRTGQFQVRLVTMPG-ELDREAFAEAVDCDG 243 Query: 228 LDLY-------LAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 L + + + + NG+ SP F QVN + +K+ A A + Sbjct: 244 LLWTQFDGLGETTAEGDTELIAGSDYLEEELNGMSFRVSPNAFFQVNTEMAEKLYALAGD 303 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + + +R+ DL+CG+G L +A +A + G+E + + NARLN + N F+ Sbjct: 304 YASLAGFERLYDLYCGIGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFA 363 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSE 399 ++ + D V++DP RAG + V+++II P R+VY+SCNP TLA + Sbjct: 364 GDVRTALRLLVDTAGSPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGA 423 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 L +AGY + ++ +DMFP T H+E + LF RV Sbjct: 424 QLAEAGYVLRKVRPVDMFPQTPHIECVALFERV 456 >UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19 Tax=Proteobacteria RepID=RUMA_PSYCK Length = 513 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 164/473 (34%), Positives = 243/473 (51%), Gaps = 47/473 (9%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARH--------------NGKTLFIPGLLPQENAEV 52 +RR + + +++ L G+GVA + +GK +F+ LP E+A V Sbjct: 39 TRRRLKDAEPLPFTIDGLSHDGRGVAVYGNGFGETDGHITDKHGKKIFVSFALPGESALV 98 Query: 53 TVTEDKKQYARAKVVRRL-SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL 111 +T + + VR + +PER P CPHFGVCGGC QH D Q K + LA + Sbjct: 99 KITNSRTSFEEGDAVRITANPNPERVVPPCPHFGVCGGCNLQHWQPDAQITFKQSVLAEM 158 Query: 112 MKHD-------VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPI 164 + H E + GYR +ARL + Y+ K + +GFR+ S+ + ++ +C I Sbjct: 159 LVHQANVAPDHWLEPVVGDRLGYRTKARLGVRYVVKKETALVGFRERSSNFLAELNECHI 218 Query: 165 LAPQLEALLPKVRACLGSLQAMRHLGHVELVQA---------TSGTLMILRHTAPLSSAD 215 L P++ + ++ + +L + + +EL +I+R+ PLS D Sbjct: 219 LDPRIGFEIENLKTLISTLDSRDKIAQLELAMGEHLPELPDGDQPVALIVRNLEPLSDGD 278 Query: 216 REKLERFSHSEGLDLYLAPDS-------------EILETVSGEMPWYDSNGLRLTFSPRD 262 +KL+ F + LYL ++ E L F P D Sbjct: 279 IDKLKVFFAARNWQLYLQSKGADSIQRIALRDTDDLSEQFGRLYYQLPEYDLTFEFIPTD 338 Query: 263 FIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAAS---VVGVEGVPA 319 F QVN VN++M A + LD++ +RVLDLF G+GNF+LPLA VVGVEG A Sbjct: 339 FTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGSVVGVEGSEA 398 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKL 379 + + NAR NG+ N FY ++L D T +PWA GFD +L+DP R+GA +MQ + K Sbjct: 399 MTARAADNARRNGINNTEFYSQDLTHDCTDKPWANQGFDALLIDPPRSGAWEIMQYLPKF 458 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 RIVYVSCNPATLARD++ALL+ GY + ++DMF HTGH+ES+ F ++ Sbjct: 459 NAERIVYVSCNPATLARDTKALLEQGYRLTHAGVMDMFCHTGHVESIARFEKI 511 >UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BS02_9GAMM Length = 450 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 154/441 (34%), Positives = 235/441 (53%), Gaps = 15/441 (3%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 +RR +Q + V+ L G+G+A GK F+ G L E + T+ +Q+ K Sbjct: 3 QPRRRRLPQQPLEAEVSALSHEGRGIAHVEGKITFVRGALAGERVRLRYTKRHRQWDEGK 62 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSE 118 ++ L +PER P C HFGVCGGC QH + Q K + ++H Sbjct: 63 LLEVLRPAPERVEPGCIHFGVCGGCALQHLTPQQQLTFKETVVREKLRHMGGVEPSTWLA 122 Query: 119 VIADVPWGYRRRARLSLNYL-PKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + WGYRR+ARL++ Y+ K ++ +GFR+ S+ + D+ C +L P++ A +P++ Sbjct: 123 PLGSPAWGYRRKARLAVKYVAGKDDRVLVGFRETHSTLVADLASCRVLDPRIGAHIPQLA 182 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSE 237 + L + +E+ ++ R+ AP + D L F+ +Y P + Sbjct: 183 ETIRCLSIFDRVPQIEVAAGDQAVGLVFRNLAPFTVEDYRLLSAFARQYDFYVYEQPGDK 242 Query: 238 I-LETVSGEMPW----YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 + + P + + + F P DF QVN VN +V RA+ L +QP+DRVLD Sbjct: 243 ASVRPIWPRAPQLSYALPDHAVSVFFEPTDFTQVNPAVNHALVERAIALLALQPQDRVLD 302 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 L+CG+GNF +A Q ASVVG+EG ALVE+ ++NA N + NV F +L + + Sbjct: 303 LYCGLGNFAFCIARQVASVVGLEGDDALVERARENAARNAITNVVFQRADLSRGIAELAH 362 Query: 353 -AKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYTIAR 410 ++G +VLLDP R+GAA V+ I L RIVYVSC P+TLARD+ L+ + GY +A Sbjct: 363 LQRDGVSRVLLDPPRSGAAEVLADIAALRAERIVYVSCGPSTLARDAGRLVHEYGYRLAA 422 Query: 411 LAMLDMFPHTGHLESMVLFSR 431 ++DMFPHT H+E + LF R Sbjct: 423 AGVMDMFPHTAHVECITLFVR 443 >UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1727 n=19 Tax=Bacillales RepID=Y1727_LISMF Length = 459 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 106/457 (23%), Positives = 191/457 (41%), Gaps = 34/457 (7%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + Q +++ + G+G+ +F+PG + E V + + ++ AK Sbjct: 1 MNQNPVEEGQKFPLTIRRMGINGEGIGYFKKAVVFVPGAITGEEVVVEAVKVRDRFTEAK 60 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------- 116 + + SP R T CP + CGGCQ QH + Q K + + ++ Sbjct: 61 LNKIRKKSPNRVTAPCPVYEACGGCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKI 120 Query: 117 -SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPK 175 + + PW YR +++ + + Q++ G A S +V ++ C + P + Sbjct: 121 RPTIGMEDPWRYRNKSQFQTRMVG-SGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNF 179 Query: 176 VRACLGSL-----QAMRHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERF--S 223 VR L G V + +G T ++ + RE L + Sbjct: 180 VRDLLEKYGVPIYDEKAGSGIVRTIVVRTGVKTGETQLVFITNSKKLPKKREMLAEIEAA 239 Query: 224 HSEGLDLYLAPDSEILETVSG---------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKM 274 E + + + G E L S R F Q+N +++ Sbjct: 240 LPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERL 299 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 + L + + ++D +CG+G A + V G++ +P +E ++NA NG++ Sbjct: 300 YQEVEKALVLTGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIE 359 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPAT 393 NV + E+ + K D V++DP R+G G+++ ++ +E ++VYVSCNP+T Sbjct: 360 NVYYEVGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPST 419 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 LARD L K Y I + +DMFP T H+E++VL Sbjct: 420 LARDLALLAKK-YRIRYMQPVDMFPQTAHVETVVLLQ 455 >UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B1C3C0_9FIRM Length = 449 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 206/449 (45%), Gaps = 31/449 (6%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 DL GQGV + + T F+ G+L E ++ V + K YA A+++ Sbjct: 1 MKKNDYFYGECIDLTHDGQGVVKVDNFTYFVKGMLVGETGKLKVIKVLKNYAIARLIELD 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI-------ADV 123 + S R P+CP F CGGCQ QH + + Q K+ + ++ + + + Sbjct: 61 NVSKYRVEPKCPVFKPCGGCQLQHLNQEGQMLFKTKRVKDCLERIGNCFVEVNDCLMMED 120 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 PW YR + ++ + K +L GF K S++I+ +C I + +V+ + Sbjct: 121 PWYYRNKVQMPIGV--KGNRLVTGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKY 178 Query: 184 -----QAMRHLGHVELVQATSG------TLMILRHTAPLSSADR---EKLERFSHSEGLD 229 + H G+++ + G L+++ + +++ D+ E + FS + + Sbjct: 179 KIYPYDKLSHQGNIKHILTKHGYHSNEIMLVLISYLDKINNVDKLVAEITKEFSMIKTVI 238 Query: 230 LYLAPD------SEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 + + + G+ YD R S + F QVN +K+ +A+E+ Sbjct: 239 QNINHRIDNVILGDKEIILFGDGFIYDNLLDNRYKISLKSFYQVNPIQVEKLYQKAIEFA 298 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 + +D VLD +CG+G L LA V GVE V + + NA+LN ++NV F ++ Sbjct: 299 KLSNDDVVLDAYCGIGTIALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDD 358 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 + + + D V +DP R G + + +I+ +P +I+Y+SC+ AT ARD + L Sbjct: 359 AGKYMIELVNNNIHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYL 418 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFS 430 + Y + +DMFPHT H+E+++ Sbjct: 419 QEFNYQVDMCQPVDMFPHTTHIENIIRLE 447 >UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase protein n=1 Tax=Xanthomonas albilineans RepID=D2U9R4_XANAL Length = 467 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 162/443 (36%), Positives = 236/443 (53%), Gaps = 14/443 (3%) Query: 3 QFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNG-KTLFIPGLLPQENAEVTVTEDKKQY 61 + + R R + DL G+GVAR G K F+ G LP E T + + Sbjct: 25 RHVARSRNRLDRTPFQTEIADLSHDGRGVARREGDKVAFVAGALPGEIVLAEPTARNRHF 84 Query: 62 ARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------- 114 A+ ++ L S +R PRCPHFGVC GC QH + D Q +K L ++ Sbjct: 85 DEARTLQVLQASSQRVAPRCPHFGVCAGCVLQHLAEDQQILAKQQVLTDNLERIGHVTPQ 144 Query: 115 DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLP 174 V ++ WGYRR+ R S+ + K + +GFR+ + D+ C + PQ+ + Sbjct: 145 VVLPALSGASWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSVCHTVIPQVGLKVA 204 Query: 175 KVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 + + L A R + +E + + + RH PLS D++ L F+ + ++L P Sbjct: 205 ALAELVERLDAKRDIPQIEFIAGDATVALTFRHMQPLSEHDQDALIAFAQAHDFAIFLQP 264 Query: 235 DS-EILETVSGE----MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 + + + + + L F P DFIQVNA +NQ+M+A AL LD Q DR Sbjct: 265 AGVDSVHPLYPQAAPLSFRLPQWDVELAFRPLDFIQVNAVLNQQMIAHALALLDAQSGDR 324 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 VLDLFCG+GNFTLPLA VVGVEG LV + ++NA+ NGL N F+ +L +D + Sbjct: 325 VLDLFCGLGNFTLPLARTVREVVGVEGDAGLVTRARENAQRNGLDNAQFFAADLTQDQRQ 384 Query: 350 QPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK-AGYTI 408 PW + GFDK+LLDP R+GA V+QQ+ + RIVYVSC+P +LARD+ L+ G+ + Sbjct: 385 APWMRQGFDKLLLDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVL 444 Query: 409 ARLAMLDMFPHTGHLESMVLFSR 431 +DMFPHT H+ES+ +F R Sbjct: 445 KAAGAMDMFPHTAHVESIAVFER 467 >UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12 Tax=Burkholderia cepacia complex RepID=RUMA_BURCM Length = 465 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 157/453 (34%), Positives = 220/453 (48%), Gaps = 27/453 (5%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARH------NGKTLFIPGLLPQENAEVTVTEDKK 59 S + + LD +GV R GK +F+ G LP E + K Sbjct: 12 SKNAPVAPGPAPVLEIESLDMEARGVGRTVTEDGTPGKVIFVEGALPGERVTYSSYRRKP 71 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH----- 114 Y +A VV L S R P+C FG CGGC QH + Q K L + H Sbjct: 72 SYEQATVVDILRPSVLRTQPKCAFFGTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLR 131 Query: 115 --DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEAL 172 V I WGYR RARL++ + K + +GF + SS + D+ C +L P + A+ Sbjct: 132 AETVFAPIHGPSWGYRYRARLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAM 191 Query: 173 LPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL 232 L +R + L + +EL + T ++LR P+++ D L F+ + +L Sbjct: 192 LVPLRRLVEGLSIRDRMPQIELAVGSQVTALVLRVLEPINADDEALLRAFADEHKVQFWL 251 Query: 233 APDSEILETVSGE-----MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 P T G+R+ F P DF QVN +N+ +V RAL L + Sbjct: 252 QPKGPDTVTPFYPLDVPLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRD 311 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEED 346 DRVLDLFCG+GNFTLPLA + V+G+EG L + NAR NG+ + TF NL E Sbjct: 312 DRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEV 371 Query: 347 VTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE-------PIRIVYVSCNPATLARDSE 399 A FDK L+DP R GA V + + ++ P RIVYVSCNP+TLARD+ Sbjct: 372 TGDDLRALGAFDKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAG 431 Query: 400 ALL-KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+ +AGY + +++MFP+T H+ES+ LF R Sbjct: 432 LLVHEAGYRLKGAGVVNMFPNTSHVESIALFER 464 >UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSQ3_9GAMM Length = 452 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 153/454 (33%), Positives = 230/454 (50%), Gaps = 25/454 (5%) Query: 1 MAQFYSAKRRTTTRQ-----IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVT 55 M + +R+ +RQ + + + L G+G+A+ GKT F+ G LP E +T Sbjct: 1 MRRHPKKHQRSPSRQSPPPVELELDIERLSFEGRGIAQSQGKTCFVEGALPNERVRAKLT 60 Query: 56 EDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD 115 E ++++ + + SP+R TP CPH+ CGGC QH S Q K +L + Sbjct: 61 EQRRRFNAGYTLDVIKASPQRVTPPCPHYQQCGGCDLQHLSPQAQTEHKRQSLLDTLARQ 120 Query: 116 VSE---------VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 + V+ GYR RARL+ + + QQ +GFR+AGS I + QCPIL Sbjct: 121 ANIRPHRCLDSAVLNRDGLGYRSRARLACWFDSRRQQYHLGFRRAGSHTIEPISQCPILV 180 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVELV-----QATSGTLMILRHTAPLSSADREKLER 221 + L+P +R L + + LGH++ L + + APL + L Sbjct: 181 EPINRLIPHLRDALPQWRLKKRLGHIDAFLNESPSGPQVALCLRLNQAPLDDSKAVMLN- 239 Query: 222 FSHSEGLDLYLAPDSEILETVSGE---MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARA 278 F+ + L D +ET+ G+ + L+L+ +F Q N G+N++MV A Sbjct: 240 FAQQHNITLAWR-DDHRVETLHGDSDLTYYLLDGELKLSLGWGEFSQANRGLNREMVRTA 298 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 +E L V P VLD FCG+GNF+L LA A V+G+EG +VEK + NAR NG + F Sbjct: 299 VEQLHVPPGAHVLDAFCGVGNFSLALANGGAKVLGLEGSDNMVEKARHNARDNGFELCEF 358 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVSCNPATLARD 397 NL +G LLDP R GA+ + Q++ + E R++Y+SCNPAT +RD Sbjct: 359 KTMNLMHSDGIGRHTLDGIHHALLDPPRDGASELCQRLAREPELQRVLYISCNPATFSRD 418 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +E L+ G+T+ + + D+FPHT H E M LF R Sbjct: 419 AEHLVNGGFTLDTVQLWDLFPHTHHSEVMGLFVR 452 >UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BA92_THEAS Length = 457 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 129/459 (28%), Positives = 208/459 (45%), Gaps = 42/459 (9%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 ++ + ++ S G+GV R F+PG L E V++ K+ YAR++++ LS Sbjct: 3 KVGDVLDLDISSTGSSGEGVGRIGDFVTFVPGALSGERVRVSLETVKRTYARSRLLEVLS 62 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIADV 123 SP+R P CP FG CGGCQ QHA LQ K + M+ ++ + Sbjct: 63 PSPDRRDPPCPLFGCCGGCQLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEPCEMSPL 122 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 WGYR +A + + + MGF + S ++V ++ CP+++ ++ ++ +R L Sbjct: 123 QWGYRNKAIVPVRSQGRGWG--MGFYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPR 180 Query: 183 ------------LQAMRHLGHVELVQA-TSGTLMILRHTAPLSS----ADREKLERFSHS 225 + L V + +G L++ +D E L R Sbjct: 181 IRGGLLSPYREGDRPSGSLREVVVRHGMRTGELLVSLVMRQDPRGRLLSDLEGLFRLLEG 240 Query: 226 EGL----------DLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMV 275 G+ D D + + + W G+RL++ F QVN ++M Sbjct: 241 LGVVGLSVFRNRRDANFVWDGDFAWGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMF 300 Query: 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335 ++ LD VL+L+ G+G+ T +A VV VE P+ VE ++N ++NG+ Sbjct: 301 QHVVDLLDETGARDVLELYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHG 360 Query: 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATL 394 VT E+ + F V+LDP R G V++ ++ ++YVSCNPATL Sbjct: 361 VTPLLGAAEDVLGDL---GGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATL 417 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 ARD L + GY + R+ DMFP T H+E + L SRVK Sbjct: 418 ARDLMLLSQGGYVLRRVRPFDMFPQTCHVECVTLMSRVK 456 >UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Proteobacteria RepID=RUMA_RALPJ Length = 450 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 161/443 (36%), Positives = 229/443 (51%), Gaps = 30/443 (6%) Query: 19 VSVNDLDSFGQGVARH------NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + + LD +G+ R GK +F+ G LP E K Y +A VV L Sbjct: 7 LDIVSLDGEARGIGRLTNEDGTPGKVVFVEGALPGERVMYRSHRVKPSYEQAGVVNILRQ 66 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPW 125 S R TP+C FGVCGGC QH Q K L + H V IA W Sbjct: 67 SASRVTPQCKFFGVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDW 126 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 GYR RARL++ ++ + +GF + SS + D+ C +L P + ALL +R +G L Sbjct: 127 GYRYRARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSI 186 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 ++ + +EL T ++LR+ P+++ D +L F+ + +L P Sbjct: 187 VQRMPQIELAVGQDVTALVLRNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYP 246 Query: 246 -----MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 G+ + F P DF QVN +N+ +++RAL+ LD QP DR+LDLFCG+GNF Sbjct: 247 LDRTLTYTLPEFGITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNF 306 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDK 359 TLP+AT+A V+G+EG AL + NA+ NGL +F NL E A FD+ Sbjct: 307 TLPMATRAREVMGIEGSEALTTRALANAQHNGLHTKTSFACRNLFEVSADDVAALGKFDR 366 Query: 360 VLLDPARAGAAGVMQQIIKLE----------PIRIVYVSCNPATLARDSEALL-KAGYTI 408 L+DP R GA V + + +L P RI+YVSCNPATLARD+ L+ +AGY + Sbjct: 367 WLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAGYRL 426 Query: 409 ARLAMLDMFPHTGHLESMVLFSR 431 A +++MFPHT H+ESM +F R Sbjct: 427 AGAGVVNMFPHTSHVESMAVFER 449 >UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desulfuromonadales RepID=Q3A1Z9_PELCD Length = 489 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 122/453 (26%), Positives = 195/453 (43%), Gaps = 32/453 (7%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 RR + ++I V+++ L+ G G+ R+ GK + + G LP E V V + ++ + R Sbjct: 32 RRKPSAELIEVTIDQLNDDGIGIGRYQGKEVLVAGSLPGEKVCVAVEHEGQRRIIGQFRR 91 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEVI 120 L+ SP R+ CP C GC Q K + + + Sbjct: 92 LLTKSPARKPSPCPSLRDCQGCSLMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILA 151 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 A+ P GYR A+L++ + ++ +G + GS ++ D+ CP+ P + ++ VR + Sbjct: 152 AEEPLGYRTSAKLAVA--RRNGRIVIGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEI 209 Query: 181 GS-----LQAMRHLGHVELV----QATSGTLMILRHTAPLSSADREKLERFSH---SEGL 228 + G + + +G M+ TA L ++ E + Sbjct: 210 ARQDIYLYNPVTRRGLLRYLLIKVSPATGKAMVTFVTAQREYKRITALAKWVARKIPEVV 269 Query: 229 DLYLAPD---------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 + + E L V + +RL SP F QVN ++ A Sbjct: 270 SVQQNVNASSGNVIMGRETLRMVGQPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALVR 329 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 W ++ + LDL+CG+G L LA A V+GVE V V QQNA +N L N F Sbjct: 330 RWAALESHEFALDLYCGIGGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFL 389 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDS 398 + E + +L+P R+G V+Q + +L+P I+YVSCNP TLARD Sbjct: 390 AGDTAELLQDLIVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARDL 449 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L K GY A + +DMFP T H+ES+ + Sbjct: 450 AELQKLGYRTAEIQPVDMFPQTAHVESVARLVK 482 >UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacillales RepID=B1YK40_EXIS2 Length = 461 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 116/454 (25%), Positives = 201/454 (44%), Gaps = 32/454 (7%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKV 66 K + ++ +V+ + G+G+A + +FIPGLL E A++ +TE +A AK+ Sbjct: 3 TKIKLQVGEVRSVTCLRMGINGEGIATLERQIVFIPGLLVGETAQIEITEIHNNFANAKI 62 Query: 67 VRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM---------KHDVS 117 ++R SP+R TP CP + CGGCQ QH S + Q R K + K D+ Sbjct: 63 LKRDVRSPDRVTPLCPIYSQCGGCQLQHMSYEGQLRYKEDMVRNAFTKSTKLNVEKSDIR 122 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 I W YR +++ ++ + Q+ G A S+ +V + +C + + + V Sbjct: 123 PTIGTTEWEYRNKSQFAVG--KEGTQIVSGLYSANSNRLVAIDECIVQNKETLRVNKAVT 180 Query: 178 ACLGSLQAMRH--------LGHVELVQA-TSGTLMILRHTAPLSSADREKLER----FSH 224 L + + ++ + +G + ++ D E L R Sbjct: 181 KILNDYNVPVYNSAKQDGVIRNIVVRTGIKTGEIQVVLVAFKDGFKDLEGLSRDIYDIPG 240 Query: 225 SEGLDLYLAPD------SEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 + L + E E + G E SPR F Q+N ++M Sbjct: 241 VISVALNINDKMTSRVFGEQTEILRGVERIEEKMGEFTYQLSPRAFFQLNPEQAERMYGE 300 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 ++ + E+RV+D + G+G+ L +A A V G+E V VE + + G + Sbjct: 301 IVKAAALTGEERVVDAYAGVGSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQ 360 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLAR 396 + E + + D ++DP R+G ++ +I + +I+YVSCNP TLAR Sbjct: 361 YVVGKAETWIPRWVKEGWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLAR 420 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 D + L+KAGY ++ + DMFP T H+E++V+ Sbjct: 421 DCDHLMKAGYKVSYIQPYDMFPQTAHVEAIVVLE 454 >UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMY7_9FIRM Length = 493 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 111/451 (24%), Positives = 184/451 (40%), Gaps = 30/451 (6%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 I+ + + L S G+ + +G +F+P + EV + + K Y K+ R + Sbjct: 1 MKKNDIVEIEITALSSECSGIGKKDGMVIFVPFSAIGDKLEVKILKVNKTYCYGKIERII 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADV 123 + SP+R TP CP + CGGC +H S + Q R+K + + + Sbjct: 61 TPSPDRVTPDCPVYTKCGGCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTN 120 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC---- 179 GYR + ++ + K L GF S IV ++C + + Sbjct: 121 INGYRNKLQIPIGTD-KDGNLIAGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGL 179 Query: 180 -LGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADR----EKLERFSHSEGLDL 230 L + H G + + SG + + A + LE++ + Sbjct: 180 NLTAYDETTHKGILRHLYLRKGYYSGEICLCIVVAKNVPEIKILSDRLLEKYPEIVSSVI 239 Query: 231 YLAPDSEILETVSGEMPWYDSNGL-------RLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + + E+ N + + +P+ F QVN +++ + A ++ + Sbjct: 240 NVNNRDTNVILGDEEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFAE 299 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + VLDL+CG G L +A A ++GVE VP +E +QNA NG+ N F + Sbjct: 300 PKG-KTVLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADA 358 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E D +++DP R G +QI RIV VSCN AT ARD Sbjct: 359 AEAARILHSRNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACFA 418 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 + GY+ + +DMF T H+E++VL S K Sbjct: 419 ELGYSTDKCVAVDMFSGTNHVETVVLLSHKK 449 >UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUT8_SYNWW Length = 419 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 130/426 (30%), Positives = 206/426 (48%), Gaps = 17/426 (3%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + S+ ++ G+GVAR GK +F+P LP E E+ +T+++ ++ARA++V+ L SP R Sbjct: 1 MRCSIERINHQGEGVARVGGKVVFVPQALPGEVVEIVITDNRARFARAQLVQLLEASPYR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV-------SEVIADVPWGYRR 129 TP CPH+ CGGC QHA + + K + ++ + PW YR Sbjct: 61 LTPLCPHYYECGGCAYQHAKYEEELVLKRQVVKDAIQRIAKIATVVEPVLSMPEPWHYRN 120 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 + + K Q+ +GF + S ++ + C +++ ++ L +V+A L +Q Sbjct: 121 KVTWHMAATGK-QEPVLGFFREASRQLLPISHCRLISEKMNCLTARVKALLPLIQPATGS 179 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY 249 + L +++ +L E S + + ++ +SG Sbjct: 180 -EITLRESSLDHSTMLIWKGLQGWPAPEIWAELSAISDSVVVIEKNT--CHYISGPQRLL 236 Query: 250 DSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA 308 D G ++ SP F QVN ++M+ L +D VLD FCG+G+ L LA QA Sbjct: 237 DKLGQVKFALSPGAFFQVNHCQAEEMIRLILSLVDFSG-KTVLDAFCGVGSIALNLARQA 295 Query: 309 ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG 368 V+GVE + + NA G+ NV F H E V + D ++LDP R+G Sbjct: 296 ERVIGVESYEPAIHDARSNAIEAGIYNVEFIHGFCERVVARI---DEPIDVIVLDPPRSG 352 Query: 369 A-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 ++Q ++ P IVYVSCNPATLARD + GY + +DMFP T H+E++V Sbjct: 353 CKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPIDMFPRTYHVETVV 412 Query: 428 LFSRVK 433 L SRVK Sbjct: 413 LMSRVK 418 >UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptococcus uberis 0140J RepID=B9DV28_STRU0 Length = 451 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 104/451 (23%), Positives = 195/451 (43%), Gaps = 32/451 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 +Q I + + + G+G+ + +F+PG L E +T K+ +A AK+++ Sbjct: 4 LKEKQKIPLKIKRMGINGEGIGFYQKTLIFVPGALKGEEIFCQITSVKRNFAEAKLLKIN 63 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE----------VI 120 S R P+CP F CGGCQ H + Q K + + +K + + Sbjct: 64 KASKNRVVPQCPIFDSCGGCQIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIG 123 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 D PW YR A+L + ++ G GS ++ + C + + ++ + L Sbjct: 124 MDNPWHYR--AKLQFQTRSFSGKVVAGLYAEGSHRLIPIDNCLVQDQSTQEIVNHITQLL 181 Query: 181 GSLQAMRH-------LGHVELVQATSGTLMILRHTA----PLSSADREKLERFSHSEGLD 229 + + L + + +A + + + L+ + + + + + Sbjct: 182 DQYKIPIYNERKIEGLRTIMIRKAIASQTLQIIFITSKEVHLAPIILDMTKTYPEIKTVA 241 Query: 230 LYLAPD------SEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 L + + E + G + + SPR F Q+N + A+ +E L Sbjct: 242 LNINRSKSSELYGDKTEIIWGQDTIEEEVLDYHFALSPRAFYQLNPKQTSVLYAQVVEAL 301 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 +V D ++D +CG+G A + S+ G++ +P +E ++NA+ G +N + Sbjct: 302 EVSESDHIIDAYCGVGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGK 361 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E+ + K D +++DP R G +++ I+ +P ++VYVSCN +TLARD L Sbjct: 362 AEDIIPKWYQDGYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVEL 421 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 K YT+ + +DMFPHT E++V R Sbjct: 422 SKV-YTVDYIQSVDMFPHTARTEAVVKLRRK 451 >UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Lactobacillales RepID=B1N060_LEUCK Length = 473 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 197/463 (42%), Gaps = 34/463 (7%) Query: 1 MA---QFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTED 57 MA + Y K T Q + V D+ G GV + + +F+ +P E +V +T+ Sbjct: 13 MAKANRVYKTKVPVTKNQQVEAEVVDITYQGMGVIKIDNFPIFVIDAIPGEVVQVGITKV 72 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV- 116 K YA +V++R+ SP R G + + Q K + +L K Sbjct: 73 LKSYAFGRVIKRVKASPNRAENVDKVAITTGIAPLANLKYEAQLTFKQRQVEQLFKKVNV 132 Query: 117 -----SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 + P YR +A++ + + QL+ GF + GS ++ V+ I P+++ Sbjct: 133 SVEVNPTIGMTDPTKYRNKAQVPVQMV--NGQLETGFYRRGSHKLMPVEDFYIQDPKVDE 190 Query: 172 LLPKVRACLGS-----LQAMRHLGHVELVQATSG------TLMILRHTAPLSSADR---E 217 + R L H G V + A G ++I+ +T L AD Sbjct: 191 AVSVTRDVLRDLGISAYDEETHKGVVRHIMARRGFYSHELMVVIITNTKKLPEADNIAAA 250 Query: 218 KLERFSHSEGLDLYLAPDSEIL------ETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGV 270 + + + + ETV G +D G P F Q+N Sbjct: 251 LRAKLPELKSFIHNINNHDTNVIMGQWNETVWGADEIHDQLMGKDFIIGPNSFYQINPQT 310 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 + A E ++P D V+D + G+G TL +A Q A V GVE V V ++NA+ Sbjct: 311 TAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSIADQVAKVYGVEVVEDAVLDAEKNAQN 370 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSC 389 N + NV F + E +T+ D V +DP R G ++ + ++P VY+SC Sbjct: 371 NHIDNVEFVTADAPEQMTQWAADGLKPDVVFVDPPRKGLTNELISAVSAMQPKTFVYISC 430 Query: 390 NPATLARDSEALLKAGYTIAR-LAMLDMFPHTGHLESMVLFSR 431 NPATLARD+ +L G+ I + +D FP T H+ES+++F R Sbjct: 431 NPATLARDTVQILAEGFHIDGPIQPIDQFPQTTHVESVLIFKR 473 >UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I245_DESAP Length = 465 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 197/456 (43%), Gaps = 38/456 (8%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + + L G+GV R G +F+P ++P E V +T + +AR ++V L Sbjct: 9 VGDRAEIEITGLSHVGEGVGRRQGLVMFVPLVVPGERVRVEITAVGRTFARGRLVEVLER 68 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIADVP 124 S R P C FG CGGC H Q R K+ + + + + + P Sbjct: 69 SRTRVEPGCALFGDCGGCHLLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEP 128 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQ------CPILAPQLEALLPKVRA 178 YR +A ++ +L +GF GS + C ++ L + + A Sbjct: 129 RHYRNKAHFHVSRDS--GRLALGFLARGSHRVTCFVDADGGSGCLLVQRDLLRVAARAAA 186 Query: 179 CLGS-----LQAMRHLGHVEL----VQATSGTLMILRHTAPLS-SADREKLERFSHSE-- 226 L S G++ A +G +M++ T + +RE ER + E Sbjct: 187 LLESLRVPLYDWETQRGYLRNLLLRRAAATGEIMLVLVTGRQNWPGEREFAERLTAEEPG 246 Query: 227 GLDLYLAPDSEILETVSGEM---------PWYDSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 + + ++ + G GL+ P F QVN +K Sbjct: 247 VVSVIRNVNALETRELLGPENRVRAGEPAITEHLGGLKFRIGPASFFQVNPEQAEKTYEI 306 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 A + + ++ V+D + G+G L LA++A SV+G E +PA V Q+NA NG++NV Sbjct: 307 ARLFAGLTGKETVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVR 366 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLAR 396 F +E+ + + D +LDP R G ++ + +L P R+VYVSC PATLAR Sbjct: 367 FEQGAVEDLLPEWAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAPATLAR 426 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 D L + G+ + ++ +DMFP T H+E +V +R Sbjct: 427 DLGRLAELGFDVVKVQPVDMFPQTSHIECVVSLTRK 462 >UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXJ3_9BACL Length = 446 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 105/451 (23%), Positives = 195/451 (43%), Gaps = 35/451 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + V D G GV + + +FI ++ E E + + KK KV+ + Sbjct: 1 MQKNDVFEGKVIDYTHDGLGVVKIDNFPIFIEDVIEGEVIEFKIIKLKKNLGYGKVLNII 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIAD 122 S R G H + + Q + K + +M + + + Sbjct: 61 ESSKNRVDGI----PKTSGANLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGME 116 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 + YR ++ + + + +++MG+ K S D+V++++C I + L+ K+R+ + Sbjct: 117 DGYHYRNKSVIPVQKV--NGEVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISE 174 Query: 183 -----LQAMRHLGHVELVQATSG----TLMILRHTAPLSSADREKLERFS--HSEGLDLY 231 H G + + + +M+ + E +E+ S + + Sbjct: 175 LNLSVYDENSHSGAIRHIMFRTNTLKSEIMVGIVAKEKFNKLDEFVEKISKLDDRIVSIM 234 Query: 232 LAPDSEILETVSGE---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 L + + + G+ +G+ S R F QVN + + ++ALE Sbjct: 235 LNINDKKTNVIFGDKTENLFGKDYITDTLDGIDFKISLRSFYQVNPVQTEVLYSKALELA 294 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 +++ D ++D +CG+G +L A + V G+E V A V +NA+ N + NV F Sbjct: 295 ELKETDTIIDAYCGIGTISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGK 354 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E+ + K D V++DP R G ++ + ++ +IVYVSCNPATLARD E + Sbjct: 355 SEDVIKKLISQDVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIM 414 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 GY + + +DMFP T H+E++VL S++ Sbjct: 415 RGLGYKLGSVQPVDMFPGTYHVETVVLLSKL 445 >UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEY8_SYNFM Length = 488 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 122/472 (25%), Positives = 195/472 (41%), Gaps = 50/472 (10%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + + V L G+ +AR G +F+ +P + +T K+QY A+VV L Sbjct: 18 LKKGREYELLVEKLVFGGKALARVEGLVVFMDHAVPGQRVRALITRKKRQYCEARVVEVL 77 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADVPW- 125 S S P CPHFGVCGGCQ Q + + Q + K +L L ++ A VP Sbjct: 78 SQSEAHTEPVCPHFGVCGGCQWQDIAYEEQLKWKRVQVADSLEHLAGAQGVKIEAAVPSD 137 Query: 126 ---GYRRRARLSLN-------------YLPKTQQLQMGFRKAGSSD-IVDVKQCPILAPQ 168 YR + + + + +G D + +V+ C + + + Sbjct: 138 RLIHYRNKMEFTFSDRRWLTPEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAE 197 Query: 169 LEALLPKVRAC-----LGSLQAMRHLGHVELVQA----TSGTLMILRHTAPLSSAD---- 215 ++ + R + + G + +G ++ T+ + Sbjct: 198 AVEIVKETRDWCRGSGVPAYGIKSQRGFWRFLVIREGKRTGQTLLHLVTSDQPEHEAAVN 257 Query: 216 ---REKLERFSHSEGLDLYLAPD------SEILETVSGEMPWYD-SNGLRLTFSPRDFIQ 265 R + RF H + ++ + V+G + GLR S F Q Sbjct: 258 TLTRHLVSRFPHITTVVHSVSRKKAQVAFGDQSRVVAGPGVIEERLGGLRFRISAESFFQ 317 Query: 266 VNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ 325 N +K+ Q + V DL+CG G+ L +A + A VVG E V +E Sbjct: 318 TNPFSAEKLYDEVSRLAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDAC 377 Query: 326 QNARLNGLQNVTFYHENLEEDVTKQPWAK---NGFDKVLLDPARAGAAG-VMQQIIKLEP 381 NARLNG++N F +L+E + + D V+ DP RAG V+ ++++ P Sbjct: 378 VNARLNGIENARFISGDLKERINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGP 437 Query: 382 IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 RI+YVSCNPATLARD + Y I + D+FPHT H+E +V R + Sbjct: 438 GRIIYVSCNPATLARDLAFFTER-YEIGTVRPFDLFPHTPHIECVVRMDRKR 488 >UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4B1_PELCD Length = 434 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 139/428 (32%), Positives = 204/428 (47%), Gaps = 16/428 (3%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + + L G GV R+ GK +F+P +P ++ + + KK+Y A+ R L S R Sbjct: 10 DLHIESLAYGGSGVGRYAGKVVFVPLTVPGDHVQCRIVRQKKRYIEARAERVLVASEHRI 69 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEVIADVPWGYRR 129 P CP FG CGGCQ H Q K + + V + WGYR Sbjct: 70 APACPAFGQCGGCQWLHLPYAEQCHWKETIFRDFLVRKLDVDSELVRPIVPSPQQWGYRS 129 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R +L PK +GF + GS ++ V CPIL P L +R+ + + + + + Sbjct: 130 RVQLKCLNTPKG--FLVGFYRRGSHYVIPVDHCPILHPLLNQAKDLLRSWIENTRWSQFV 187 Query: 190 GHVELVQATSGTLMILRH-TAPLSSADREKLERFSHSEGLDLYLA-PDSEILETVSGE-- 245 ++L + + H A L+ + S + L++ L+ V G Sbjct: 188 SQIDLAVDDQERVRAVVHCLANDVDDFVTHLKPGALSANMGLFVQTGRKHNLQHVCGPVE 247 Query: 246 -MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 + D+ LRL + P F Q+N N+ MV + L P RVLDLFCGMGNF+LP+ Sbjct: 248 LLIEVDTPELRLGYGPGGFAQINLPQNRAMVREVVGTLVSNPPGRVLDLFCGMGNFSLPV 307 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A A VVGVE +E + NARLN ++NV+F+ + A D V++DP Sbjct: 308 ARLAQEVVGVEAYLQSIEMARLNARLNEIENVSFFAREAY-GAATEYGADGAIDLVIMDP 366 Query: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R+GA V ++++ + P RI+YVSC+P TL RD LL GY + D+FPHT H E Sbjct: 367 PRSGAYDVARELVTVRPARILYVSCDPPTLVRDLLPLLHNGYRLVWSRPFDLFPHTHHTE 426 Query: 425 SMVLFSRV 432 S+ RV Sbjct: 427 SITFLERV 434 >UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFU4_RHOM4 Length = 466 Score = 403 bits (1035), Expect = e-111, Method: Composition-based stats. Identities = 134/464 (28%), Positives = 205/464 (44%), Gaps = 45/464 (9%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + + V G+ + R +G LF+ G +P + A V V + KK YA ++V L Sbjct: 2 LKKGAELELIVEKFADRGKSLTRVDGYVLFVEGGVPGDRARVRVVKRKKNYAEGRIVELL 61 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADVP-- 124 SP R P C +FG CGGC+ QH + Q +K AL + EV +P Sbjct: 62 EPSPLRTEPCCRYFGTCGGCKWQHVRYEAQLEAKRQSVYEALVHHGGFEDVEVRPTLPSP 121 Query: 125 --WGYRRRARLSLNYLPK------------TQQLQMGFRKAGSS-DIVDVKQCPILAPQL 169 +GYR + S + + +G G+ ++D+++C + P Sbjct: 122 RLYGYRNKMEFSFSADRWLTPEEIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPIT 181 Query: 170 EALLPKVRACL-----GSLQAMRHLGHVELVQ----ATSGTLMILRHTAPLSSADREKL- 219 LL ++RA RH G++ + +G +M+ T+ A +L Sbjct: 182 VRLLNELRAFFKAKGWEPWDIRRHEGYLRHLVIRTGTRTGEVMVNLVTSRYDEARMAELG 241 Query: 220 ----ERFSHSEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNA 268 E+F L + E T+ G +D G R +P F Q N Sbjct: 242 AFLQEQFPEVTTLVNTINSRPAQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNT 301 Query: 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA 328 +++ A E ++P+D V DL+CG G ++ +A VVGVE V + VE + NA Sbjct: 302 EQAERLYEVARELAALRPDDLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANA 361 Query: 329 RLNGLQNVTFYHENLEEDV-TKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVY 386 NG+ N TF +L E + D V++DP RAG V+++I +L P R VY Sbjct: 362 AANGITNCTFVAGDLLEVLTPAFVRTHGRPDVVIVDPPRAGMHPKVVRRIGQLRPERFVY 421 Query: 387 VSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 VSCNP T ARD + L Y I + +D+FPHT H+ES+V Sbjct: 422 VSCNPQTQARDLKLLRDL-YRIEAVQPVDLFPHTDHVESVVALR 464 >UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DVS0_EIKCO Length = 430 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 161/428 (37%), Positives = 226/428 (52%), Gaps = 19/428 (4%) Query: 18 TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 T +++ +D G+GVAR +GKT FI G LPQE +T KK + A+ R L+ SP R Sbjct: 3 TATIHSIDHEGRGVARIHGKTTFITGALPQETVAYQITRSKKHHDEAQATRILTPSPYRI 62 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGYRRR 130 P CPH+ CGGC QH ++Q K L ++ + I WGYR R Sbjct: 63 APACPHYSQCGGCTLQHVHSNVQVAYKQRILEDQLQRLGKVRPQYLLPPIYGQAWGYRYR 122 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM-RHL 189 ARLS ++ + +GF+ S IVD++QCPILAPQL L RA L L + + Sbjct: 123 ARLSAHHSQ--GRTTLGFQSRSSHRIVDIRQCPILAPQLANQLSNTRALLQQLNRLHTPV 180 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSH--SEGLDLYLAPDSEILETVSGEMP 247 +EL + + + L HT L A R L + + ++L + + + P Sbjct: 181 RTIELHHSPAANSLTL-HTEHLPKAARAHLIQHAQSLPANWHIWLQTPHRPAQPLLPDSP 239 Query: 248 W----YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 L L + P DF QVN N +VARA++ L QP +R+ DLFCG+GNF+LP Sbjct: 240 QLSYSLPEYALTLPYRPGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGLGNFSLP 299 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 +A A V+G+EG P L E+ QNARLN L + F+ +L + FDK+LL Sbjct: 300 IAAAGAQVIGIEGSPELTERASQNARLNHLAERAQFHSADLFQTTEHTVAGWGYFDKILL 359 Query: 363 DPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 DP R+GA ++Q + P RIVYVSCNPAT ARD+ L+ GY +++MFP T Sbjct: 360 DPPRSGAYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVNMFPQTA 419 Query: 422 HLESMVLF 429 H+E++ F Sbjct: 420 HVETVGCF 427 >UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9N7_9PORP Length = 493 Score = 399 bits (1026), Expect = e-110, Method: Composition-based stats. Identities = 137/479 (28%), Positives = 204/479 (42%), Gaps = 51/479 (10%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 A++R R + V + + + GQ VA K LF+P P + + V K+ Y Sbjct: 1 MARKRKEPRYLDDVLIERMGAEGQCVAHVEDKVLFVPYAAPGDRCRIRVGRSKRSYMLGT 60 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM--------KHDVS 117 + L SP R PRC FG CGGC+ Q D Q R KS A M +H Sbjct: 61 IEELLEPSPLRVEPRCEVFGACGGCKWQQLPYDEQLRGKSQQAADAMTRIGHIAIEHTEP 120 Query: 118 EVIADVPWGYRRRARLSLNYLP---------------KTQQLQMGFRKAGSSD-IVDVK- 160 V + PW YR + + + + + +GF KAG D ++D+ Sbjct: 121 IVGCEDPWHYRNKVEFTFSKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHG 180 Query: 161 -QCPILAPQLEALLPKVRACL-------GSLQAMRHLG---HVELVQATSGTLMILRHTA 209 C I P + + H G + + T G LM+L A Sbjct: 181 VTCQIADPIASEIRDYLNDYCLARWEEYPYYDQRAHEGVMRTLLIRTTTLGGLMVLIAFA 240 Query: 210 PLSSADREKL-----ERFSHSEGLDLYLAPD------SEILETVSGEMPWYDSN-GLRLT 257 + R +L ERF L + + SG ++ GLR Sbjct: 241 EGTEELRVQLLEALRERFPQITSLYYMVNTKFNDSLADLPAQLYSGAPYIEENMHGLRYR 300 Query: 258 FSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 P+ F Q N+ +++ + E+ ++ ++ V DL+ G G LA SV+G+E V Sbjct: 301 IGPKSFYQTNSRQAERLYEKVREYAQLKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYV 360 Query: 318 PALVEKGQQNARLNGLQNVTFYHENLEEDVT-KQPWAKNGFDKVLLDPARAGAAG-VMQQ 375 P VE N NG+ N TFY +++ +T A D ++ DP RAG V++ Sbjct: 361 PEAVEDAFVNRDQNGITNATFYAGDMKAILTDDFVAAHGRPDVLVTDPPRAGMDAPVVEV 420 Query: 376 IIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSRVK 433 I++ P RIVYVSCNPAT ARD L+ G Y + +DMFPHT H+E++ L S++ Sbjct: 421 ILRAAPQRIVYVSCNPATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSKLN 479 >UniRef50_B2UQE8 RNA methyltransferase, TrmA family n=4 Tax=Verrucomicrobia RepID=B2UQE8_AKKM8 Length = 407 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 116/431 (26%), Positives = 184/431 (42%), Gaps = 47/431 (10%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + Q + + ++ L + G G+ R +G +F+P LP + + V + + Y+ A +V Sbjct: 13 PFSYHQELELDIDALSNAGDGIGRVDGWVVFVPFALPGDRVKARVWRNDRNYSSADLVEV 72 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV-------SEVIAD 122 ++ SP+R P C FG CGGCQ QH S D Q K+ +A L++ V + Sbjct: 73 INPSPDRVEPGCRLFGTCGGCQYQHFSYDRQLLWKTRQVADLLRLQAGLELPVNPAVASP 132 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRACLG 181 + YR + + + + +GF KAGS D+VDV QCPI + LP R + Sbjct: 133 RQYHYRSKITPHFDRPKEGGKPAIGFLKAGSRRDVVDVPQCPIAMECINEALPLARKSVY 192 Query: 182 SLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILET 241 A G L++A+ G + ++ E Sbjct: 193 QAAARFKRGATILLRASEG----------------------------TVITNNNAVACER 224 Query: 242 VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 V L F DF Q N + + + E+ ++D +CG G F Sbjct: 225 VG---------DLEFHFLAGDFFQNNPFILPLFTDYVAQQASMDGEEFLVDAYCGSGLFA 275 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 L LA + V+GVE + + NAR NG+++ F + + + V+ Sbjct: 276 LSLAKKFKKVLGVEVSETSADWARSNARSNGIEHAEFLAADAGAIFARVDFPAEK-TAVV 334 Query: 362 LDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 +DP R G + + Q+ P ++VYVSCNPAT RD KAGY + + D+FP T Sbjct: 335 IDPPRKGCSAEFLAQLFAFGPGKVVYVSCNPATQIRDLAEFDKAGYFVTAVQPFDLFPQT 394 Query: 421 GHLESMVLFSR 431 HLE +V + Sbjct: 395 KHLECVVTLKK 405 >UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU49_9GAMM Length = 439 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 139/429 (32%), Positives = 223/429 (51%), Gaps = 15/429 (3%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 + + DL G+GV R +GK FI G LP E E K+ Y A V+ ++ SP Sbjct: 13 PLICEIVDLIHDGRGVGRPDGKACFIDGALPGETVEFRRHNQKRNYDEAHVINIVAASPS 72 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD------VSEVIADVPWGYRR 129 R P C HF CGGC QH Q K L ++ + ++ WGYRR Sbjct: 73 RVEPLCKHFPRCGGCTLQHLDHGAQIAFKQQQLLDSLQRVDLSPEIILPALSAPQWGYRR 132 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 RARL++ K Q+ +GFR AGS I + +C +LA L ++ + + + + L Sbjct: 133 RARLAVQ-RAKDGQIIVGFRNAGSRRIEPITECHVLAEPLPEIVAALPGWMVNFPSGIRL 191 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS----EILETVSGE 245 +EL+ A + + + + S+++RE + L+ + + ++ Sbjct: 192 SEIELLSADNAVAIAIEASRVPSASEREAMLAELTFTDAQLWWKTEKQTAFKRIDGGDQA 251 Query: 246 MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR---VLDLFCGMGNFTL 302 + ++ + L P F+QVN+ +N++M+ + L+ + +R +DLFCG GNF+L Sbjct: 252 LHVVLNDRIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCGSGNFSL 311 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 PLA Q V+G+EG+ LV K Q+NA+ N + N F +L T K D VLL Sbjct: 312 PLAAQFDRVIGIEGLSELVGKAQENAQRNNVSNAEFVVSDLSNW-TGMRKIKGKVDLVLL 370 Query: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 DP R+GAAGVM ++K + ++VY+SC+P+T+ RD + L++AGY + ++DMFPHT H Sbjct: 371 DPPRSGAAGVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEAGYKMIAAGVMDMFPHTAH 430 Query: 423 LESMVLFSR 431 +E++ L + Sbjct: 431 VEAIALLEK 439 >UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYI0_DESAD Length = 465 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 128/463 (27%), Positives = 213/463 (46%), Gaps = 43/463 (9%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 + II + L G+G+ R+ G TLF+ G++P + +T+ KK++A A+ Sbjct: 5 NKPIHKGDIIETKIESLAFGGKGIGRYEGLTLFVEGVVPGQTVRCEITKLKKRFAEARRT 64 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSEV---- 119 LS E +TP C +FG CGGC Q Q K L R+ K Sbjct: 65 EILSHVEEEQTPTCEYFGSCGGCLHQDIKYPAQTFWKGRQVCETLERIGKIGPDTPGMGE 124 Query: 120 ---IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPK 175 + + +GYR + S + + L++GF++ GS +D++++ CP+L Q + Sbjct: 125 EALPSPLEYGYRNKMEFSFHGI--GDSLKLGFKRRGSETDVLNISSCPLLPEQCADIPAL 182 Query: 176 VRACLGSLQAMRHL----GHVELVQAT----SGTLMILRHTAP------------LSSAD 215 VR + G+ + SG +MI T P L + Sbjct: 183 VRDYCAHTNIGAYRHNRGGYWRKLVVRFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDN 242 Query: 216 REKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG------LRLTFSPRDFIQVNAG 269 +L+ F HS E L +V+G+ ++ + +P F Q N+ Sbjct: 243 IPQLKSFVHSTRKGRADLATGERLISVTGQEHITETLTHADGSEVSYRITPNAFFQTNSK 302 Query: 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR 329 + + ++ E + +D V DLFCG G + +A ++G+E V+ + NA Sbjct: 303 GAEVLYRKSSELAAPKADDVVWDLFCGSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAA 362 Query: 330 LNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVS 388 LNGL+N + NL + P D V++DP R+G +Q++I+L P +I+Y+S Sbjct: 363 LNGLENTQYIVGNLASE-KGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYIS 421 Query: 389 CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 CNP+TLARD+ + + Y + R A +DMFPHT H+ES+ L ++ Sbjct: 422 CNPSTLARDAAKM-EGRYKLERFAAVDMFPHTAHVESIALLTK 463 >UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=5 Tax=Geobacter RepID=Y1452_GEOSL Length = 495 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 120/469 (25%), Positives = 199/469 (42%), Gaps = 39/469 (8%) Query: 1 MAQFYSAK------RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTV 54 M + S K + +I ++V LD G G+ H+G + + G LP E + Sbjct: 1 MNKKRSPKTVLAAGPSSKRGDLIELAVTALDEDGNGIGTHDGTNVHVIGALPDERVRARL 60 Query: 55 TEDKKQYARAKVVRRLSDSPER-ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK 113 T K++ A+ V L+ S R P C G C GC Q K R ++ Sbjct: 61 THVGKRHLHAEAVEVLTPSRARLAQPSCKRAGSCDGCPLIVMHYPDQLNWKRTFTERQIR 120 Query: 114 HD--------VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPIL 165 ++ + + YR A+L ++ + + +G + S ++D+ CP+ Sbjct: 121 RYQTLGAAEVLATLPSPNQLHYRNSAKLVVSGTFR--RPVIGIYRRNSHQVMDIGTCPLH 178 Query: 166 APQLEALLPKVRACLGS-----LQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADR 216 P + ++ V+ + G + + +GT M + T + + Sbjct: 179 HPLINRVVTAVKEGIAKCKVQVYNPRTGSGLLRYLVVRISERTGTAMAVFVTVERNYNEI 238 Query: 217 EKLERFSHSEGLDLYLAPDSEIL---ETVSGEM---------PWYDSNGLRLTFSPRDFI 264 L + + + + + G+ + G+R T SPR F Sbjct: 239 HHLAKHLQQSVPQVEVVVQNVNSSEGNVILGQRDYFLTRQHALTEELGGIRFTISPRSFF 298 Query: 265 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 QVN+G + + +W + ++ V+DL+CG+G L LA A V G+E V A V Sbjct: 299 QVNSGGARIIYETVRQWSSLTGKESVVDLYCGIGGIALFLAGTAREVHGIEVVEAAVNDA 358 Query: 325 QQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIR 383 + NARLN + N +F + E + + D V+L+P R G GV+ ++ P R Sbjct: 359 ESNARLNRIHNCSFEAGDAAELIEELVEEGERLDLVVLNPPRKGCDAGVLNKVAAAGPAR 418 Query: 384 IVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 IVYVSC PATLARD + L GY R+ +DMFP T H+E++ L + Sbjct: 419 IVYVSCAPATLARDLDILAGLGYATLRVQPVDMFPQTPHVENIALLVKK 467 >UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gammaproteobacteria RepID=A5CXB2_VESOH Length = 439 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 148/438 (33%), Positives = 233/438 (53%), Gaps = 12/438 (2%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 +RR + +++ G+G+A K +F+ LP E T ++ A Sbjct: 1 MRRRRKLEHKTYKLNIESFSHEGRGIAHFEDKIIFVSDALPGELVIANRTFSCAKFEEAD 60 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIAD--- 122 L + R P+C FG+CGGC Q+ S + Q + KS L ++ Sbjct: 61 AKEILKPADNRMKPKCDVFGICGGCSFQNLSSEDQIQIKSRWLKKVFARQAKVEPETWLK 120 Query: 123 ----VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 WGYRR+ARL + Y+ K ++ +GFR+ SS I ++ +C +L P + L + Sbjct: 121 SLQFQSWGYRRKARLGIRYVAKKDKVLIGFRERKSSFITNMSRCEVLHPSIGEHLEVLAN 180 Query: 179 CLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS-E 237 C+ L + E+V + SG +ILRH LS D + L + + Y + Sbjct: 181 CIERLSIKSSIPQFEVVISESGIALILRHLESLSVKDEKILADCAQELNITFYTQSGGLD 240 Query: 238 ILETVSGEMPW---YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 ++ + + + + + F P DF+QVN +NQ+MV+ A+E L++ D+V+DLF Sbjct: 241 SVKPLDEPTILTYSHSNYNIIMEFLPTDFVQVNFKLNQQMVSLAVELLELNESDKVIDLF 300 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 CG+GNFTLP+A A VVG+EG LVE+ + NA N + NV FY +L ++V W K Sbjct: 301 CGLGNFTLPIARYAKYVVGIEGDLGLVERAKYNAEKNSINNVDFYRSDLCKEVVGFEWFK 360 Query: 355 NG-FDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 ++K L+DP+R+GA +++ + KL R+VYVSCNPATLARD+ L+K G+T+ + Sbjct: 361 GKTYNKALIDPSRSGAIEIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLETAGV 420 Query: 414 LDMFPHTGHLESMVLFSR 431 +DMFP T H+ES+ LF + Sbjct: 421 IDMFPQTSHVESIALFVK 438 >UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTJ5_ALIAD Length = 449 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 135/450 (30%), Positives = 223/450 (49%), Gaps = 21/450 (4%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 MA S + V + G GVA G T+FIP LLP E A V + + +K+ Sbjct: 1 MANTQSP--PVAAGEEYEVEAIRQNDDGDGVAAIGGMTVFIPFLLPGERARVRIEQVEKR 58 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV---- 116 +ARA+++ R +D+P+R PRCP F CGGCQ QH + Q K A + R+ + Sbjct: 59 FARARLLARANDAPDRVEPRCPVFARCGGCQVQHMAYAAQAAWKEARIRRMAERLGLEAG 118 Query: 117 ---SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + P+ YR + ++ + + Q+++MGF + GS D+ + C ++ ++ +L Sbjct: 119 VVRPIETSHTPYRYRNQVQMPVRWNATAQRVEMGFFELGSHDMAVTETCLLVPEAMDDVL 178 Query: 174 PKVRACLGSL-QAMRHLGHVELVQAT-SGTLMILRHTAPLSSADREKLERFSHSEGLDLY 231 + R L SL + + HV + Q+ +G + ++ A + + + RF + + + Sbjct: 179 RRARWFLTSLGSTAQFVHHVIVRQSHATGDMAVVFALATDDPSVKRSVGRFHAPQVVQVA 238 Query: 232 LAPDSEILETVSGE---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 + V G+ + GLR+ +SPR F+QV A + ++M + + Sbjct: 239 VTVQPRAHGPVWGDGAEVMKGGSHLEENLCGLRVRWSPRSFLQVQADMAERMYHHVVRAV 298 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 +V+ D V+D +CG+G TL LA+ AA VGVE V + + NA+LN ++N F + Sbjct: 299 EVRETDVVIDAYCGIGAMTLLLASHAARAVGVEEVEDAIADARANAKLNRVRNAEFVVDR 358 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 +E + + A N D ++ DP R G ++ + R+VYVSCNPATL RD L Sbjct: 359 VERWLPRFVEAGNRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLL 418 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 G+ + + DMFP T H+E +V R Sbjct: 419 AARGFYVTDIQPFDMFPQTSHVECVVTMRR 448 >UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10VH2_TRIEI Length = 485 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 115/481 (23%), Positives = 212/481 (44%), Gaps = 66/481 (13%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 Q++ +++ DL G GV R++ K +F+P + + +T K +YA K+ + L S Sbjct: 9 GQLVEITITDLTDSGDGVGRYDEKVVFVPNTVSGDRLLARLTRVKPKYAYGKMHQLLEGS 68 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIAD--------VPW 125 +R P C CGGCQ QH + Q ++K + + ++ + + + Sbjct: 69 EQRIKPYCIVADKCGGCQWQHVGYEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTF 128 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS--- 182 GYR + L+ + +++ G+ + GS ++++ QCPI + LL +++ + Sbjct: 129 GYRNKVTYPLSISNE-GEVKAGYYQKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKW 187 Query: 183 --LQAMRHLGHVELVQATSGT-----LMILRHTAPLSSADR----------EKLERFSHS 225 + +G + + G ++ L + ++ + LE +S Sbjct: 188 KIYDEHKRIGILRHLSLKIGEKTGEIILTLVVNGSEENPEKLLPGITVQAQKWLEDYSRL 247 Query: 226 EGLDLYLAPD------SEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARA 278 G+ L + V+G + GL +P F QVN +K+V Sbjct: 248 VGVCLNYNSKATNTIFGQQTVCVAGRFYVREKFSGLEFQLTPNTFFQVNTKTTEKLVEIV 307 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLAT-------------------------QAASVVG 313 ++ L + + ++D +CG+G F L LA + + V+G Sbjct: 308 IQELALSNSEIIVDAYCGVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIG 367 Query: 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-V 372 +E +E+ + NA++N L NV FY +E + + + D VLLDP R G V Sbjct: 368 LEVQGVAIEQAKFNAKINHLTNVHFYEGKVERLLPQL---EVKPDIVLLDPPRKGCDRSV 424 Query: 373 MQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSR 431 ++ ++++ P RIVY+SC PATLARD + L G Y + ++ +D FP T H+E + Sbjct: 425 LETLLEILPERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLIK 484 Query: 432 V 432 + Sbjct: 485 L 485 >UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18 Tax=Proteobacteria RepID=RUMA_ACIAC Length = 491 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 170/461 (36%), Positives = 233/461 (50%), Gaps = 47/461 (10%) Query: 19 VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + V +D QGVAR +GK +FI G LP E + K + +A + +SP+R Sbjct: 31 LEVTSMDMDAQGVARRPDGKVVFIDGALPFEWVSASTHRKKNNWEQASLTAIHRESPQRV 90 Query: 78 TPRCPHFG----VCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWG 126 P CPHFG CGGC+ QH V Q K L + H V I WG Sbjct: 91 RPGCPHFGLHAGACGGCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWG 150 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR RARL++ ++ K ++ +GF + S I D++ CP+L P + A+L +RA + S+ A Sbjct: 151 YRYRARLAVRHVEKKGKVLVGFHERKSRYIADMEVCPVLPPHVSAMLLPLRALIASMDAR 210 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEM 246 +EL T ++LRH PLS AD +L F+ + G+ +L P + E Sbjct: 211 DTCPQIELACGDDVTALVLRHLEPLSEADLGRLRSFAAAHGVQWWLQPKGPDTVHLLDEG 270 Query: 247 -----PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 G+ + F P DF QVN +N+ +V RAL LD DRV+D FCG+GNFT Sbjct: 271 GPQLNYALPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLDAGRTDRVIDWFCGLGNFT 330 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNG--------LQNVTFYHENLEEDVTKQPWA 353 LP+ATQA VVG+EG ALV + ++N R N L TF NL E + A Sbjct: 331 LPIATQAREVVGIEGSEALVARSRENYRKNQDDRPQGQALAPATFVARNLFEMTPEMLIA 390 Query: 354 KNGFDKVLLDPARAGAAGVMQQIIKLE---------------------PIRIVYVSCNPA 392 DK L+DP R GA + + + + P RIVYVSCNPA Sbjct: 391 DGVADKWLVDPPREGAFALAKALADIHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPA 450 Query: 393 TLARDSEALL-KAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 TLARD+ L+ +AGY +++MFPHT H+ESM +F RV Sbjct: 451 TLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFERV 491 >UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHC6_9NEIS Length = 437 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 154/433 (35%), Positives = 222/433 (51%), Gaps = 22/433 (5%) Query: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPR 80 + LD +GVA+ NGKT+F+ LPQE A++ +T+DK +A A+V + + SP R P Sbjct: 6 ITSLDYESRGVAKLNGKTIFVNNALPQEIAQIRITQDKAHFAEAQVEQIVQPSPYRRAPA 65 Query: 81 CPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADV---PWGYRRRARL 133 CPH+G CGGC QH Q K L R+ K ++ V PW YR R RL Sbjct: 66 CPHYGDCGGCTMQHVEFTAQVAMKQRVFEEQLQRIGKVQPESLLPPVYGTPWHYRSRTRL 125 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 ++ + ++ +G++ S IV + QC +L + L + L + ++ + Sbjct: 126 AV-HTSANGKVVLGYQAKRSHKIVGINQCLLLPEHVSGCLGIIHDALQDMVNVQPKVGIR 184 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHS--------EGLDLYLAPDSEILETVSGE 245 V+ + G + + L S ++ + + VS Sbjct: 185 SVEISVGEGVTAVNIVSQKRQPENVLCALSGCLNRGAGGKTVWQVWQQIGNAKPQAVSPH 244 Query: 246 M-----PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 GL + F DF Q+N +N+ MVARA+ +LD QP +R+ DLFCG+GNF Sbjct: 245 DAPPLVFRLPEFGLTMPFQLGDFTQINLPLNEIMVARAVRYLDPQPHERIADLFCGLGNF 304 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 TLPLA +AA VVG+EG AL ++ NAR NGL N F +L + A FDK+ Sbjct: 305 TLPLAKRAAEVVGIEGSAALTQRAVANARANGLPNAQFASADLFAATPETLAALGRFDKM 364 Query: 361 LLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 LLDP RAGA V+Q + P RIVY+SCNPATLARD+ L GY A M+++FP Sbjct: 365 LLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLARDAAVLASKGYRFATAGMMNLFPQ 424 Query: 420 TGHLESMVLFSRV 432 T H+E++ +F RV Sbjct: 425 TSHVEAIGVFERV 437 >UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillaceae RepID=A4IK46_GEOTN Length = 463 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 128/461 (27%), Positives = 199/461 (43%), Gaps = 47/461 (10%) Query: 14 RQIITVSVNDLDSFGQGVARH----NGK----TLFIPGLLPQENAEVTVTEDKKQYARAK 65 +Q + LD G G A GK L IP LP E V + K++ A A+ Sbjct: 6 KQSFITDIEQLDKKGAGQAVVWQEEEGKRKKLKLTIPSTLPGEKVRVLIDRPKRRKANAR 65 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV------ 119 + + PER P CPHF CGGC QH + Q R K+ + L++ + Sbjct: 66 LEEVIEAHPERLEPPCPHFDRCGGCVWQHWQYEGQLRHKTEHVKALLEQHGFDPNIVRET 125 Query: 120 -IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVR 177 + PW YR + + + +G + G+ I+ ++ C I ++ +V Sbjct: 126 IGMEHPWHYRNKMEFTFSPEG-----LLGLHEQGNFRQIISLETCLIAGERIVKAAMEVA 180 Query: 178 AC-----LGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSAD-REKLERFSH--- 224 L H G + V +G +M+ + ++ + + Sbjct: 181 RWARDHQLPGYHKDTHEGLLRHVMVRESFATGEVMVALFATEAPEGELKQAADDLTERIT 240 Query: 225 -----------SEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQ 272 E +E ++G YD G R F Q N Sbjct: 241 KALPEVKSLLWLENRAWADRIQAEQTHVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAA 300 Query: 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG 332 K+V ALE QP ++++DLFCG+G F+LP A + ++ G+E V +E ++NA+ NG Sbjct: 301 KLVELALEMGKPQPHEKMIDLFCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNG 360 Query: 333 LQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNP 391 + N F + + + + +LLDP R+GA VM++I + +P RIVYVSCNP Sbjct: 361 IDNTYFLARDARRGIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNP 420 Query: 392 ATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 T A D L+ GYT+ + +DMFPHT H+E + L SRV Sbjct: 421 ETFAADIAELVPFGYTLKTVQPVDMFPHTAHVELVALMSRV 461 >UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR99_9BACE Length = 454 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 113/450 (25%), Positives = 190/450 (42%), Gaps = 30/450 (6%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 I + + + G GVAR +G +F+ G + E +V + + + +VVR Sbjct: 5 NVKENDICRLIIEGYTAEGAGVARLDGIVVFVQGGVRGEECDVRIEKVGRTNLFGRVVRV 64 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWG--- 126 SP R P+C H+ CGGCQ + + + +K + ++ + Sbjct: 65 FQPSPARIMPQCIHYTKCGGCQFRQMNYAEELEAKRIRVEDCLQRIAGLDVTVPVIHGAK 124 Query: 127 ----YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 YR + + + P+ ++GF + + ++ V+ C + L + + Sbjct: 125 DTRRYRNKVQFPVQPGPEG--PRVGFYRQRTHQVISVEDCLLQPETAARLRAAAVSWMQW 182 Query: 183 LQAMRH--------LGHVELVQATSGTLMILRHTAPLSSADREKLE---RFSHSEGLDLY 231 + + HV + +G ++ S + L R + + Sbjct: 183 HNISAYDEKTGRGLVRHVYVRVNRAGQSLVCLLVNGKSVPQEDALVQALRNVEPGLVGVV 242 Query: 232 LAPDSEILETVSGEMPWY---------DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 L + + + G+ G S F QVNA + + RAL++ Sbjct: 243 LGVNEKKNNVILGDSYRTLWGQDWLEDTLCGFTFRLSVPSFYQVNANQAEVLYGRALDFA 302 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 + + VLDL+CG+G +L +A QA V G E VP VE ++NA NG+ N F + Sbjct: 303 GLTGRETVLDLYCGIGTISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGD 362 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E D V +DP R G A V+ I+ + P R+VYVSC+PATLARD + Sbjct: 363 AGEAARALAARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRF 422 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + GY + + +DMFP T H+ES+VL +R Sbjct: 423 VSLGYVLRKAEAVDMFPRTAHVESVVLLTR 452 >UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W3B9_NEICI Length = 461 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 148/429 (34%), Positives = 232/429 (54%), Gaps = 19/429 (4%) Query: 20 SVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETP 79 ++ LD G+GVA+ GKT+FI G LP E +T+ KKQ+ A+ V S ER P Sbjct: 20 EISALDYEGRGVAKVGGKTVFIKGALPSERVGFQITKQKKQFDEAETVAIFKVSDERTVP 79 Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIAD---VPWGYRRRAR 132 +C +F CGGC QH S Q K L R+ K +++ W YR RAR Sbjct: 80 QCRYFERCGGCSLQHISPTAQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHYRDRAR 139 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL-GH 191 S++ K+ +L++GF+ ++D+V + C ++ + LP +R L L + Sbjct: 140 FSVSLD-KSCRLKLGFQAKKTNDVVGISSCMLIPKPVSDKLPAIRELLQDLAEGGSIARF 198 Query: 192 VELVQATSGTLMILRHTAPLSSADREKLERFSHSE---GLDLYLAPDSEILETVSGE--- 245 E + + T++ + + L D ++ ++ SE ++L + ++ E + Sbjct: 199 AEFYRGSEITVLNIAFKSKLRQNDESRIRQWFDSELSDDWQIWLQIEGKVSEPFYPQKDT 258 Query: 246 --MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 G+ + F P DF Q+N N+ MV+RA++ LD++ +RV DLFCG+GNF+LP Sbjct: 259 ILKYTLPEFGIEMPFRPGDFTQINTDTNRLMVSRAIKMLDIRQGERVADLFCGLGNFSLP 318 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 +A ASVVGVEG LV + +QNARLNG F NL + + FDK+L+ Sbjct: 319 IAKSGASVVGVEGAENLVGRARQNARLNGCGGQTDFIAANLFDCTENTVASWGKFDKMLI 378 Query: 363 DPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 DP R+GA V++ + P +IVYVSCNP+TLARD+ L++ GY + ++ +++MF HT Sbjct: 379 DPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYILGQVGIMNMFAHTS 438 Query: 422 HLESMVLFS 430 H+ES+ +F Sbjct: 439 HVESIAVFE 447 >UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=78 Tax=root RepID=Y932_STRR6 Length = 543 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 99/452 (21%), Positives = 193/452 (42%), Gaps = 32/452 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 I+ V + DL G GVA+ +G F+ LP E + V + K+ KV + L Sbjct: 2 LKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKYL 61 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIAD 122 SP R + G H S Q + K+ + + + + Sbjct: 62 VQSPHRNQDLDLAYLRSGIADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGME 121 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P YR +A++ + + L+ GF + S +++ ++ I P ++ ++ +R L Sbjct: 122 HPVKYRNKAQVPVRRV--NGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRR 179 Query: 183 LQAMRH--------LGHVELVQAT-SGTLMILRHTAP-----LSSADREKLERFSHSEGL 228 + + ++ + + SG +M++ T + + +++F + Sbjct: 180 FDLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSV 239 Query: 229 DLYLAPDSEI------LETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEW 281 + + T+ G+ D G + F QVN + +K+ A+++ Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGLAFYQVNTEMAEKLYQTAIDF 299 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 +++ +D V+D + G+G L +A V GVE +P VE ++NA+LN + N + + Sbjct: 300 AELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCD 359 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEA 400 E + +L+DP R G ++ + RI Y+SCN AT+ARD + Sbjct: 360 TAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKL 419 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + GY + ++ +D+FP T H+E++ L S++ Sbjct: 420 YQELGYELKKVQPVDLFPQTHHVETVALLSKL 451 >UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Bermanella marisrubri RepID=Q1MXP1_9GAMM Length = 448 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 152/432 (35%), Positives = 240/432 (55%), Gaps = 12/432 (2%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 KR + ++ T+ V+DL + QGVAR + +FI G LP E E ++E ++++A AK+ Sbjct: 17 KRSSGPGELKTLVVHDLSNEAQGVARDDDGVVFIEGALPDEKVEALISEQRRRFALAKIK 76 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-------HDVSEVI 120 R + S R P C H+ CGGCQ QH S Q K L I Sbjct: 77 RIVEASANRVEPLCRHYQRCGGCQLQHLSSQHQIPYKQNNLQHEFASKLKIDSAPWQTPI 136 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 +GYRRRAR+ + Y KT ++ +GFR+ +S + D+ +CP+L +L+ L+P +++ L Sbjct: 137 TGDAYGYRRRARIGIRYRHKTGEVIVGFREQQNSHLTDISECPVLVSELQNLIPSLKSVL 196 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 +Q + + +L+ +++ LR L +D++ L ++ SE + L + D I Sbjct: 197 KKVQKVEVVTQAQLLAGDDLSVVSLRAIKSLPQSDKQILIEWAKSEAVQLDIQGDDAIET 256 Query: 241 TVSG--EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + W++ G+R+ F+ FIQ N VN++MV AL+WL+V+ + VLDLF G+G Sbjct: 257 LFQPNDKTLWFNVAGMRIHFASNSFIQANGRVNEQMVQTALQWLNVKAHETVLDLFAGLG 316 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 NFTLPLA A V VE +V Q NA+ N L NV NL+ + D Sbjct: 317 NFTLPLAQHAKRVCAVELDKKMVADLQHNAQRNELSNVDVQLGNLDNL--DAVERLSAAD 374 Query: 359 KVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 ++LDP RAGAA +M + K + R++YV+C P++L RD+ L+++G+ + ++ +LDMFP Sbjct: 375 VIVLDPPRAGAAVIMPWVAKQKS-RVLYVACEPSSLIRDAAVLVESGFKLDKVVVLDMFP 433 Query: 419 HTGHLESMVLFS 430 T H+E+M LFS Sbjct: 434 QTKHVETMALFS 445 >UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR7_9FIRM Length = 458 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 201/456 (44%), Gaps = 38/456 (8%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 +++ + LD+ G+G+ + + + I LLP E E+ Y R + Sbjct: 8 MKEKKKDPISSVRTKCIQLDASGKGLVKIKDEKVLIENLLPGEEVELE-------YTRGR 60 Query: 66 VVRRLSD-----SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV---S 117 VR +S SP R PRC F CGGCQ QH Q K + +L+ Sbjct: 61 GVRVVSAVRLTDSPLRVKPRCRVFDRCGGCQLQHVDYPAQLDWKKEKVQQLLGRYGRVHD 120 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + PW YR + + + K ++ G + S +V C I P E +L V Sbjct: 121 VLGMAEPWAYRNKVIATFSLS-KKGKVIAGIYEEDSHQLVAYSSCWIQDPIAEKILATVC 179 Query: 178 AC-----LGSLQAMRHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERFS--HS 225 + + G V G L+ L +P+ A ++ ++R H Sbjct: 180 ELMTELRIEPYDEDQRTGLVRHCLIRVGHVSREVLVCLVCASPIFPARKQLIQRLRQRHP 239 Query: 226 EGLDLYLAPDSEILETVSGE---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA 276 E + + +S V G + GL+ + + + F Q+N+ + + Sbjct: 240 EITTIVMNVNSRNTSVVLGSQERVLVGTGKIQDELCGLKFSIAAKSFYQINSVQTEVLYG 299 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 +A+E ++ ++RVLD +CG+G+ +L A A VVGVE P V +NAR+N L+N Sbjct: 300 KAMELANLTGKERVLDAYCGIGSISLVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNA 359 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLA 395 F + + + +D V +DP RAGA ++ + +L P RIVY+SCNP+T A Sbjct: 360 WFVEADAGLFMEQAAREGQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQA 419 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 RD L GY + + +D+FP T H+E++VL R Sbjct: 420 RDLRHLTHEGYQVRTIVPVDLFPMTSHVETIVLLQR 455 >UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7Z6_MACCJ Length = 459 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 104/458 (22%), Positives = 186/458 (40%), Gaps = 33/458 (7%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + Q +++ L G+G+ K F+ G LP E VT+ +Y +AK Sbjct: 1 MTDIQVKVGQQFPLTIKRLGINGEGIGYFKRKITFVKGALPGEVIVAQVTDINPKYLQAK 60 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIAD--- 122 +V+ S ER P+C F +CGGCQ QH S Q + K + + V D Sbjct: 61 MVKIREKSNERVKPKCNVFDLCGGCQLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIK 120 Query: 123 ------VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKV 176 P+ YR + + + ++++ G K S+ ++D+ +C + + +V Sbjct: 121 DVKGMHNPYTYRNKNQFPV--EKTGRKVRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEV 178 Query: 177 RACLGSLQA--------MRHLGHVELVQA-TSGTLMILRHTA----PLSSADREKLERFS 223 + + L + + H+ A +G + ++ T E++ R + Sbjct: 179 KKIMSELNIDACKNPMREKGVRHIVTRVALATGEIQVVFVTNTRHLKKQDLLAERVMRLA 238 Query: 224 HSEGLDLYLAPDS-------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA 276 + + L + + E + E S F Q+N + Sbjct: 239 GVKSVALNINTEKTSIVMGDETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYN 298 Query: 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 336 + + ++ V+D FCG G + LA A V G++ + NA LNG N Sbjct: 299 EVRDAAALTGQENVVDAFCGTGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNC 358 Query: 337 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLA 395 F + E + + D + +DP R G + ++I ++P VY SCNP+TLA Sbjct: 359 KFEVGDASEKLNEWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLA 418 Query: 396 RDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 +D L KA + + + +DMFP T +E++V +R + Sbjct: 419 KDLAHLTKA-FQVEYIQPVDMFPQTAQVEAVVKLTRKR 455 >UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5A4_9BACT Length = 508 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 108/471 (22%), Positives = 203/471 (43%), Gaps = 47/471 (9%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 ++++ + + + D+ + G+ +AR + +F+P +P + ++ V + K Y A+ Sbjct: 37 MSRKKKPLPLLENILITDVAAEGKSLARIDDMVVFVPFAVPGDVVDLQVRKKKHHYCEAE 96 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSE--- 118 VVR + S R+TP+C HFG+CGGC+ Q + Q ++K L R+ K ++ E Sbjct: 97 VVRFIKYSDVRQTPKCQHFGICGGCKWQMLPYEEQLKAKQKQVHDQLERIGKIELPEFRP 156 Query: 119 -VIADVPWGYRRRARLSLNYLPK------------TQQLQMGFRKAGSSD-IVDVKQCPI 164 + ++ + YR + + +GF G+ D I +++C + Sbjct: 157 IMGSEKTYEYRNKLEFGCSNKRWLTWEEVTSGVKYDHMNAIGFHITGAFDKIYPIEKCWL 216 Query: 165 LAPQLEALLPKVRAC-----LGSLQAMRHLGHVE---LVQATSGTLMILRHTAPLSSADR 216 + + +R + G + + A +G M+L D Sbjct: 217 MDDLCNQIRNCIRDYAIDHDISFFDLRAQTGLLRDIMIRSANTGEWMVLVQFKFQEEGDE 276 Query: 217 EK--------LERFSHSEGLDLYLA-------PDSEILETVSGEMPWYDSNGLRLTFSPR 261 ++ + F L D ++ + L+ + + Sbjct: 277 QRAHGLLQHVADSFPQITSLLYVDNQKCNDTFGDQTVVVFKGKDHITETMGDLKFKVAAK 336 Query: 262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321 F Q N + + A E+ + ++ V DL+ G G +A +A V+G+E V + Sbjct: 337 SFYQTNTNQAYHLYSVAREFAQLTGKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAI 396 Query: 322 EKGQQNARLNGLQNVTFYHENLEEDV-TKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKL 379 + + N+ N + N FY ++++ + + D ++ DP RAG V++ I+ Sbjct: 397 KDAKVNSAANDIHNTQFYAGDMKDILTEEFIAEHGRPDVIITDPPRAGMHPDVVRTILGA 456 Query: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 P RIVYVSCNPAT ARD + L + Y + + +DMFPHT H+E++VL Sbjct: 457 APQRIVYVSCNPATQARDLQMLDEQ-YKVMAVQPVDMFPHTPHVENVVLLE 506 >UniRef50_A0LDR0 RNA methyltransferase, TrmA family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LDR0_MAGSM Length = 424 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 142/428 (33%), Positives = 218/428 (50%), Gaps = 19/428 (4%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + ++++ L S G G+ H+G +F+P P + E+ + +K++A A++++ + SP R Sbjct: 1 MQITIDKLASGGSGLGFHDGMAIFVPNTAPGDLVEIEIKTKRKRHAHAELIKIIQASPNR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIAD--------VPWGYR 128 P CP + CGGCQ QH + + K+A + ++H GYR Sbjct: 61 CEPICPVYHQCGGCQLQHVNQTTRNTFKAAVVKEALQHIGKFENPPMQPLQSAQPETGYR 120 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 RR L + ++ +GF + S IVD+ CPIL P+L+AL+ +R + L Sbjct: 121 RRCGLKIYWVR--DHAVVGFYQTASKRIVDLPNCPILHPKLDALIHPIRTLVSELSVRER 178 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILET---VSGE 245 L V+L G MIL LS+ D+E L F+H+ +D + +S E Sbjct: 179 LPQVDLSCGDEGVGMILHLLRKLSAKDKEILTTFAHTHKIDQLWIQSGRKEDLTPFISQE 238 Query: 246 MPWYDSNGL-RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 Y +G +L F P DF Q + N+++V + L + RVLDLF G+GNFTLPL Sbjct: 239 PLRYSPDGKSQLKFMPGDFTQAHFEQNRQLVEQVL--AWIGQGQRVLDLFSGLGNFTLPL 296 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A Q V G E V++G+ N L+ +VTF +L + + N D +++DP Sbjct: 297 ARQFTRVTGYESYEPAVKRGRSNTTLH--PSVTFKTMDLFSETALKTLPLNQVDAMVVDP 354 Query: 365 ARAGAAGVMQQIIKL-EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 R GA + +QI P IV+VSC+PAT ARD+ L GYT+ ++ LDMFP T H+ Sbjct: 355 PRDGAVNLAKQIKDAGGPATIVWVSCDPATFARDAAILCAGGYTMEQVKPLDMFPMTSHV 414 Query: 424 ESMVLFSR 431 E + LF R Sbjct: 415 EVVALFKR 422 >UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBC1_9GAMM Length = 458 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 139/443 (31%), Positives = 220/443 (49%), Gaps = 19/443 (4%) Query: 3 QFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYA 62 + + ++R+ + V L G+G+A NGK +F+ G L E K + Sbjct: 12 RVFKPQQRSVISGQHLIPVASLADDGRGIAAINGKNVFVTGALAGETVSARYVASHKTHD 71 Query: 63 RAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHD 115 A VV +SP R P C +F CGGC QH Q + K L++L Sbjct: 72 EAVVVSVSKNSPHRVKPLCEYFDQCGGCDLQHLDYPSQTQHKWDRLSQLFSPWLDNDDRL 131 Query: 116 VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPK 175 V I PW YR RAR ++ +GFR+A S +VD+ +C I+ + L Sbjct: 132 VMGSITGDPWSYRHRARFAV--DASKHSCNIGFRQARSHKVVDITRCSIVFDGINDALAT 189 Query: 176 VRACLGSLQAMRHLGHVELVQATSGTL-MILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 VR + SL+ + V + + +SG + + + T PLS++D + + + + + Sbjct: 190 VRRLVKSLKNRSVINEVSITEDSSGNIGIAIFCTRPLSASDIAAVSEHAITHDCHIEVRS 249 Query: 235 DSEILETVSGEM------PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + + + E DS + + ++ DF QVN +N ++VA ++WL + +D Sbjct: 250 SATATQCMFPEDRSVALSYTLDSYDVVIPYTVDDFTQVNPAINHRLVALTIKWLQLGEKD 309 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 V D FCG+GNF+LP++T A VG E V ++V+K + NA N + N F + + Sbjct: 310 IVADFFCGIGNFSLPISTFVARTVGFEWVASMVDKARSNAVFNHIDNCEF---KVIDLTA 366 Query: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 + F+K LLDP RAGA + +Q+ + + RIVY+SCNP TLARDS+ L + Y + Sbjct: 367 DRLVIDEDFNKALLDPPRAGAEKICKQLAESKLERIVYISCNPRTLARDSKILTQGNYQL 426 Query: 409 ARLAMLDMFPHTGHLESMVLFSR 431 L++ DMFP T H E + LF+R Sbjct: 427 TELSLADMFPQTVHSEVVALFTR 449 >UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Desulfovibrio RepID=C4XJA3_DESMR Length = 450 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 129/454 (28%), Positives = 191/454 (42%), Gaps = 41/454 (9%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + +SV L G+GVAR +G +F+ G LP E VT+ KK +A A R Sbjct: 2 NMQANDELELSVARLALGGRGVARLDGMVVFVDGALPGETVMAKVTQVKKGFAEAVAERI 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIA 121 ++ +PE PRCPHFGVCGGC Q Q K +A + V + Sbjct: 62 ITPTPEAVEPRCPHFGVCGGCDWQRLDYPAQLFWKREQVAETLARLGGLPDVPVADTVAS 121 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFR-KAGSSDIVDVKQCPILAPQLEALLPKVRAC- 179 +GYR + + +L +G R + + ++D+ CP++AP ++ VR Sbjct: 122 PEVYGYRNKMEFAFA-----GRLHLGLRERRNPARVLDIDTCPLMAPWAGEVVNAVRELC 176 Query: 180 ----LGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSA-------DREKLERFSH 224 L + G + G+ + T P +A + L RF Sbjct: 177 RETGLAAYDPRTGKGVWRHLVLRDSRHDGSRLAHIITGPSRAAGDAVHTLGKTLLARFPE 236 Query: 225 SEGLDLYLAP------DSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVAR 277 G + E V G + G L P F Q N G Q + Sbjct: 237 LTGFVHSVRRAPTPVAHGERQSIVLGRGHLTEKMGQATLRVLPDAFAQTNTGAAQSLYEI 296 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 P LDL+CG G L LA A V G++ P +E + +A+L+ N Sbjct: 297 VTREASSDPAGTALDLYCGSGGLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCV 356 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLAR 396 F + A + V+LDP RAG A V+ I++ P R+VYVSCNPATLAR Sbjct: 357 FEAA--DAADALDDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLAR 414 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 D + L +A Y + + +D+FPHT H+E++ + Sbjct: 415 DLKRLAEA-YDVTSVTPVDLFPHTAHIEAVASLT 447 >UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD26_CARHZ Length = 441 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 129/438 (29%), Positives = 206/438 (47%), Gaps = 25/438 (5%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPG-LLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + + DL G GV + + F+ G + + +V VT +K+ + + L++SP R+ Sbjct: 5 LEIIDLTEEGLGVGKKEKRVYFVSGDVTVGDVVKVKVTSEKRGVILGEALEILTNSPYRD 64 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIA-----DVPWGYRRRAR 132 PRCPHFG CGGC Q+ + Q K + +MK YR R + Sbjct: 65 VPRCPHFGYCGGCSLQNLDYEQQLVLKKTKVYNIMKKIGRIDAPINSVLPNFAFYRYRQK 124 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH---- 188 + + +L +G+ ++ V C I L + V L + + + Sbjct: 125 VHFTFGSSQNKLAIGYFDRKNNWF-PVTDCLIADKSLVEVAHYVTEILDAFKLKAYFNDA 183 Query: 189 --LGHVELV-QATSGTLMILRHTAPLSSADREKLER-FSHSEGLDLYLAPDSEILETVSG 244 L H+ + +T+G + ++ L+ +E + + E L + + V G Sbjct: 184 GVLRHLVVRKSSTTGEIQVVITAVKLNFNVKEIAAKILLNPEIQSLTFHENPKKTREVFG 243 Query: 245 ---------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 + G+ +P F Q+N +K+ AL++LD+ D V D + Sbjct: 244 KGTAVTFGTRYITEELLGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGYS 303 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G+G+ TLP A AASVVGVE + VE + NA+LNG+ NV F+ +EE + Sbjct: 304 GVGSLTLPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEEKLPWLLKKGY 363 Query: 356 GFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 F+K++LDP R G V+++IIKL P RIVYVSCNPAT ARD + L + GY + + Sbjct: 364 RFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYPVEITPV 423 Query: 415 DMFPHTGHLESMVLFSRV 432 DMF T H+E++VL + Sbjct: 424 DMFSQTMHVENVVLLKKK 441 >UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=72 Tax=Bacteria RepID=Y1095_PORGI Length = 465 Score = 389 bits (1000), Expect = e-107, Method: Composition-based stats. Identities = 127/461 (27%), Positives = 204/461 (44%), Gaps = 49/461 (10%) Query: 20 SVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETP 79 + DL + G + R + +F+P P + V V + K+ + + ++V S SP R+ P Sbjct: 2 EITDLAAEGNALCRIDDMVMFVPFAAPGDRCTVQVVKKKRNFMQGRIVSIESPSPIRKGP 61 Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDV----SEVIADVPWGYRRRA 131 C HF VCGGC+ QH ++Q R+K L RL K +V + ++ YR + Sbjct: 62 FCTHFTVCGGCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNKL 121 Query: 132 RLSLNYLPK---------------TQQLQMGFRKAGSSD-IVDVKQCPILAPQLEALLPK 175 + + + +GF G D ++D+++C + A + + Sbjct: 122 EFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRLF 181 Query: 176 VRACL-------GSLQAMRHLGHVE---LVQATSGTLMILRHTAPLSSADREKL-----E 220 +R G + + ++G LM++ A RE L E Sbjct: 182 IREYCMQDPERYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVAE 241 Query: 221 RFSHSEGLDLYLA-------PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQK 273 RF L + D E+L E + GL+ + F Q N+ + Sbjct: 242 RFPQITSLLYVINTKCNDTIGDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQAYQ 301 Query: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL 333 + A E+ + ++ V DL+ G G +A QA V+G+E VP +E + N+ LNG+ Sbjct: 302 LYRIAREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGI 361 Query: 334 QNVTFYHENLEEDVT-KQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNP 391 +N FY ++++ +T D V+ DP RAG V+ I+ P RIVYVSCNP Sbjct: 362 ENTLFYAGDMKDILTNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYVSCNP 421 Query: 392 ATLARDSEALLKAG-YTIARLAMLDMFPHTGHLESMVLFSR 431 AT ARD L+ G Y + +DMFPHT H+E++VL R Sbjct: 422 ATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVR 462 >UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU44_9GAMM Length = 440 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 160/442 (36%), Positives = 230/442 (52%), Gaps = 18/442 (4%) Query: 6 SAKRRTTTRQIIT-VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 + + + V + LD G GVAR +GK LF+ G LP E V E +Y RA Sbjct: 1 MTRPKPLRDMPVERVHITGLDGEGTGVARVDGKVLFVAGALPGECVRVRRYEGTPRYDRA 60 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVS 117 +VV S +R TP C H GVCGGC QH Q K L ++H + Sbjct: 61 RVVEVERASSQRVTPPCAHAGVCGGCSLQHLEPGAQIAVKQRHLEDQLQHIGRVRPARIL 120 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 I YR +ARLS+ +PKT+ +GFR+ SS + ++ CP+L P++ + +R Sbjct: 121 PPIQGPSLHYRSKARLSVR-VPKTRGALVGFREYHSSFVAAMESCPVLDPRVGERILDLR 179 Query: 178 ACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS- 236 A + LQ + E+ + ++ILRH LS +D L+ F+ + GL + L Sbjct: 180 ALVARLQRPAAIPQWEIACTDAHAVLILRHLDALSRSDLRLLQGFADAHGLRILLQGGGP 239 Query: 237 EILETVSGEMPWY-----DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 E L+ + GE LRL F P FIQVN +N +V RA+ L +P + ++ Sbjct: 240 ESLQALPGEDVPELEYALPEFDLRLRFQPLGFIQVNPWINPVLVRRAMALLAPEPGEEIV 299 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQ 350 DLFCG+GNFTLP+A A +GVEG LV + + NA LNGL F +L + Sbjct: 300 DLFCGLGNFTLPMARLGARALGVEGDTRLVAQARFNAELNGLAARAHFIAADLTQTALAD 359 Query: 351 PWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALL-KAGYTIA 409 G K+L+DP R+GA +++ I R+VYVSCNP TLARDS L+ + G+ + Sbjct: 360 LPGAAGVRKMLIDPPRSGAIEILKGI-GPALRRLVYVSCNPDTLARDSAYLVQQQGFRLE 418 Query: 410 RLAMLDMFPHTGHLESMVLFSR 431 +++MFPHT H+ES+ LF+R Sbjct: 419 AAGIVNMFPHTAHVESVALFTR 440 >UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n=3 Tax=Desulfovibrio vulgaris RepID=Y924_DESVH Length = 468 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 121/452 (26%), Positives = 201/452 (44%), Gaps = 37/452 (8%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 + V+V+ L G+ V RH G+ +F+ LP + V +T +K++A A+ + ++ + Sbjct: 7 GMTLDVTVDALAPGGKAVCRHEGRVIFVDRGLPGQQLHVRLTTVRKRFAEAECLAVVTHT 66 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP----W 125 + P CPHFG CGGC Q+ Q K +L R+ + + V+ +P Sbjct: 67 ADECDPFCPHFGDCGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQ 126 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC-----L 180 G+R + + + + L +G R+ G ++VDV C + ++ R L Sbjct: 127 GFRNKMEFAFTTDDR-EMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGL 185 Query: 181 GSLQAMRHLGHVELVQ----ATSGTLMILRHTAPLSSADREKLERF-------SHSEGLD 229 H G + A G ++ TAP A+ F G Sbjct: 186 PGWDDAAHRGFWRFLVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCV 245 Query: 230 LYLAPDS------EILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWL 282 + + + GE+ + G + L F F+Q N + + Sbjct: 246 HSIRSQNSQVAYGDATVFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMA 305 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 + + V DL+CG+G+ L LA AA++ G+E PA VE Q+NA+ G + F + Sbjct: 306 GLSGREHVWDLYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGD 365 Query: 343 LEEDVTKQPWAKNG---FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDS 398 + + + K D V+ DP RAG V+ +++ P RIVYVSC+PAT+ARD Sbjct: 366 VRALLRSRSKGKAQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDV 425 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 L++ YT+ +D+FPHT H+E++VL S Sbjct: 426 GLLMQR-YTLHEARPVDLFPHTPHVETVVLLS 456 >UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQ01_9SPHI Length = 476 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 124/475 (26%), Positives = 197/475 (41%), Gaps = 50/475 (10%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFI------PGLLPQENAEVTVTEDKK 59 K T ++ V ++ + + G+ + R + +F+ PG+ P + ++ +T KK Sbjct: 2 RRKIHKTPERLAHVRIDAVAAEGKCIVRTDEGVIFVENPTGGPGVAPGDVVDLRITNTKK 61 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHD 115 QY A R S R P C HFG CGGC+ QH Q K + R+ K + Sbjct: 62 QYREAVAERVHEWSAVRTEPFCEHFGTCGGCKWQHIQYSEQLGFKHQQVVDHLTRIGKVE 121 Query: 116 VSEVIADVPWG----YRRRARLS-----------LNYLPKTQQLQMGFRKAGSSD-IVDV 159 + E +P YR + + + Q +GF G D ++ + Sbjct: 122 LPEFRPIMPAHPTQYYRNKLEFTCAEGRWLTSAEVGTNQPMDQRAVGFHVPGRFDKVLPI 181 Query: 160 KQCPILAPQLEALLPKVRACLGS-----LQAMRHLGHVELV----QATSGTLMILRHTAP 210 + C + A+ + A + H G + + T+ +M+ A Sbjct: 182 RHCYLQPDPSNAIREAIDAYVLQHDMTLYNLKMHTGFLRTLIIRTADTTQQVMVTLQVAQ 241 Query: 211 LSSADREKLER-----FSHSEGLDLYLAPDS-------EILETVSGEMPWYDSNGLRLTF 258 + L F L+ L E++ L Sbjct: 242 DNPELLNGLMTYLQTLFPQITSLNYILNTKKNDSYQDQEVVNWAGKPYIEEQMEALTFRI 301 Query: 259 SPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVP 318 P+ F Q NA + A E+ + ++RV DL+ G G L +A A VVGVE V Sbjct: 302 GPKSFYQTNAQQAYNLYKVAREFAGLTGQERVYDLYTGTGTIALFVARLAKHVVGVEYVE 361 Query: 319 ALVEKGQQNARLNGLQNVTFYHENLEEDVTK-QPWAKNGFDKVLLDPARAGAAGVM-QQI 376 A V + NA++NG+ N TF +++ +T D V+ DP RAG + +Q+ Sbjct: 362 ASVADARVNAQVNGIANTTFVAGDMKAILTDEFFAEHGRPDVVITDPPRAGMDEAVTRQL 421 Query: 377 IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +K P RIVYVSCN AT ARD L GYT+ + +DMFPHT H+E++V+ ++ Sbjct: 422 LKAAPERIVYVSCNTATQARDLAIL-DEGYTVTGVQPVDMFPHTHHVENVVVLTK 475 >UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacteroidetes RepID=B3EU44_AMOA5 Length = 468 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 114/450 (25%), Positives = 199/450 (44%), Gaps = 43/450 (9%) Query: 24 LDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPH 83 L + VAR + + +F+ P + ++ + + K+ YA A V+ P R P C H Sbjct: 18 LAEGNRCVARVDNQVVFVEQAAPGDIMDIQIMKKKRGYAEAIPVQLHKPGPNRIQPFCMH 77 Query: 84 FGVCGGCQQQHASVDLQQRSKSAALA-------RLMKHDVSEVIADVP-WGYRRRARLSL 135 FGVCGGCQ QH Q +K + R++ V++++A P YR + + Sbjct: 78 FGVCGGCQWQHIDYSAQLAAKEQLVKEKLIRLGRIVNPPVAKILAADPNQYYRNKLEYTF 137 Query: 136 NYLPKT-----------QQLQMGFRKAGSSD-IVDVKQCPILAPQLEALLPKVRACLGS- 182 + + +GF K G D +VD++ C + A A+ V Sbjct: 138 SNKRWLTQQEIQSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNAIRLAVGQFAREH 197 Query: 183 ----LQAMRHLGHVE---LVQATSGTLMILRHTAPLSSADREKLERFSH---SEGLDLYL 232 H G + + ++G +M++ + F L Sbjct: 198 GYSFYDFRSHQGLLRNLIVRTTSTGEVMVIVQFGENQEGPIVHIMDFIQKKFPTLTSLQY 257 Query: 233 APDSEILETVS--------GEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 +++ ET G+ + +GL+ P+ F Q N+ + + + + Sbjct: 258 IVNTKYNETFYDLEVHCYAGQPFITEVIDGLQWQIGPKSFFQTNSTQAKVLYQTVADLAN 317 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 +Q + V DL+ G+G LA +A VVG+E + + ++ Q NA+LN L NV+F+ ++ Sbjct: 318 LQGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNVSFWLGDM 377 Query: 344 EEDV-TKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 ++ + D ++ DP RAG V+QQ++++ P +I+YVSCNPAT ARD L Sbjct: 378 KDIFNEELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNPATQARDIHDL 437 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 Y + +DMFPHT H+E++ + + Sbjct: 438 QDR-YVLTHAQPIDMFPHTSHVENVAVLVK 466 >UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTB6_SYNR3 Length = 455 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 120/450 (26%), Positives = 200/450 (44%), Gaps = 35/450 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + +T+ + DL G G+A+H+GK +F+ G LP E A V +T + ++ Sbjct: 5 ASHPNQLTLEIKDLALDGTGLAQHDGKLVFVSGALPAETATVRITGQGRGKLHGEISELT 64 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-----DVSEVIADVP- 124 SP+R P C G CGGC H Q K L ++ + E I Sbjct: 65 CSSPDRRDPVCILAGKCGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQA 124 Query: 125 -WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 GYR RA + + + L+ GF + GS +V++ CP+L P+L+AL+ ++A L + Sbjct: 125 VLGYRNRAIIPV--QERDNSLKAGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKADLQAA 182 Query: 183 ----LQAMRHLGHVELVQAT----SGTLMILRHTAPL-----SSADREKLERFSHSEGLD 229 G + + SG +++ + ++R+ G+ Sbjct: 183 GWPIYNEDTQKGLLRQLVLRAGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVGVV 242 Query: 230 LYLAPD------SEILETVSGEMPWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 L + P ++G +S G R F QV+ + +V L Sbjct: 243 LNVQPKPGNTLLGPKERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRSEL 302 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 +Q + ++D +CG+G LPL + ++G+E +E+ Q NA LNGL++ F+ + Sbjct: 303 QLQSGEVLVDAYCGVGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGS 362 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 +E + + D +LLDP R G V + I + P R+ YVSCNPATLARD L Sbjct: 363 VERRLQEFLPFT---DVLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALL 419 Query: 402 L-KAGYTIARLAMLDMFPHTGHLESMVLFS 430 + + ++ D FP T H+E+M + + Sbjct: 420 CADQRFELTKVVPFDFFPQTTHIEAMAILT 449 >UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXR9_DICNV Length = 424 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 214/422 (50%), Gaps = 15/422 (3%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 V+V DLD G+GVA+ +G+ +FI G LP E T KKQ+ A V + SP+R Sbjct: 7 VTVFDLDYQGRGVAKIDGQVVFIEGALPDETVTFCKTSAKKQFIEAVVDEIIEPSPQRVA 66 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVSEVIAD---VPWGYRRRA 131 PRCP + CGGC QH Q K L RL V+ W YRRRA Sbjct: 67 PRCPFYDRCGGCALQHWHSQEQLLGKQKLWLTQLQRLGGAQPEHVLLPLAGKEWRYRRRA 126 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGH 191 RL+++Y + + +GF+ S D+V V C IL L A LP + L +L + Sbjct: 127 RLAVHY--ENDVIAVGFKAKRSHDVVAVNDCLILQEHLAAALPLLPDFLRAL-LPVKVDE 183 Query: 192 VELVQATSGTLMILRHTAP-LSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYD 250 + L + LR LS A EK +++ G L + L ++ + Sbjct: 184 ILLTAGEKVAALTLRTKKRALSPAWGEK---WANLAGAHWQLWENDRCLFGEPNDLYYQP 240 Query: 251 SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAAS 310 +G+ L F+P DFIQVNA VN+ ++ L WL + VLDLF G+GNF+LPLA + A Sbjct: 241 ISGVTLHFTPDDFIQVNASVNEALIQTVLAWLAPLEKSEVLDLFSGLGNFSLPLAYKGAR 300 Query: 311 VVGVEGVPALVEK-GQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 V VEGV A+V++ + A + +L Q + LLDP RAGA Sbjct: 301 VTAVEGVRAMVQRGAKMAAEQQLSSRLEMQCMDLFSVSAAQMKSWQSAKSWLLDPPRAGA 360 Query: 370 AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 V+Q + K P +IVYVSCNPATLARD L G+ + R +++MF H+ H+ES++L Sbjct: 361 HAVVQALPKKFPEKIVYVSCNPATLARDVAILQSKGFHLERGQVVNMFAHSAHIESVILM 420 Query: 430 SR 431 +R Sbjct: 421 TR 422 >UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3384C Length = 448 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 109/440 (24%), Positives = 204/440 (46%), Gaps = 35/440 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 +I +++ D+++ G+GV + GKT+F+P + + V + K++YA K+ + Sbjct: 2 NQQNNNLIKLNIVDINNDGEGVGKFEGKTIFVPNTVTGDVVLVQLNFIKQKYAYGKIKKI 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHD----VSEVIA 121 + SP R P C CGGCQ QH S + Q K +L R+ + + + + Sbjct: 62 IHSSPYRIRPSCIVADKCGGCQWQHISPEYQLYIKQNKIIQSLQRIGRFKDVFVLPILSS 121 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 +GYR +A L Y + G+ + S ++++ QCPI +L + L +++ + Sbjct: 122 SQIFGYRNKATYPLGYSKFGN-VNAGYYQRYSHKLINLNQCPIQDSRLNSFLAEIKVDIE 180 Query: 182 S-----LQAMRHLGHVELVQAT----SGTLMILRHT-----APLSSADREKLERFSHSEG 227 + GH+ + SG +++ + + + LER+ + G Sbjct: 181 KQGWSIYNEKTYQGHLRHLALRIGQNSGEVLLTLISTTGNITKIKEQAKLWLERYPNLVG 240 Query: 228 LDLYLAPD-------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + + + ++ V + P F QVNA + ++ L+ Sbjct: 241 VLVNKNSEKNNKIFGNQTFSIVGKPFLKERFFNIDFKLRPDTFFQVNAQSAETLLHSLLD 300 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 L + +++++D +CG+G FTLPLA + + +G+E +E+ + NA LN + NV FY Sbjct: 301 NLILTGKEKIVDAYCGIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQ 360 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSE 399 +++ + D VLLDP R G V++ + ++ P I+Y+SC P+TLARD + Sbjct: 361 GAVKDILPTLNIF---PDIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLK 417 Query: 400 ALL-KAGYTIARLAMLDMFP 418 + + Y I + +D FP Sbjct: 418 KICYQNLYKILWVQPVDFFP 437 >UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8X8_9DELT Length = 465 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 124/466 (26%), Positives = 194/466 (41%), Gaps = 50/466 (10%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 ++ + L G+GVA +G +F+ G LP + +T KK++A Sbjct: 2 PLPKDSLVQCEIESLAYGGRGVAHVDGMAVFVAGGLPGDTVSARITRSKKRFAEGVAEAV 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS--------EVIA 121 L+ S R P C HFG CGGC QH + Q K+A +A + + Sbjct: 62 LTPSIHRVEPLCAHFGTCGGCALQHLAYPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGS 121 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKA---GSSD---IVDVKQCPILAPQLEALLPK 175 WGYR + + + L +G R+ GS+ ++D+ QC + A ++ Sbjct: 122 PDIWGYRNKMEFAF--EQREDGLHLGLREPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVA 179 Query: 176 VRACLGSLQAMRH--------LGHVELVQATSGTLMILRHTAPLSSAD-------REKLE 220 VR + + H+ + A +G +M+ TA D L+ Sbjct: 180 VRQFCAATGVPAYNPATESGFWRHLVIRHAAAGEVMVHLITARDERKDNLIKDMAELFLQ 239 Query: 221 RFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG-------------LRLTFSPRDFIQVN 267 RF GE Y +R SP F Q N Sbjct: 240 RFPELASFVHSTRVKR--TTVAFGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTN 297 Query: 268 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQN 327 G ++ E+ + +LDL+CG G + LA +A V+G E V K +++ Sbjct: 298 TGGASELFGTVAEFCALSDTHVLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARES 357 Query: 328 ARLNGLQNVTFYHENLEEDVTKQPWAKNG--FDKVLLDPARAGAAG-VMQQIIKLEPIRI 384 ARLNGL N +F +LE+ + + + D V++DP R+G + ++ L RI Sbjct: 358 ARLNGLTNCSFVSGSLEQGIPGFAGSGDQAVPDVVVVDPPRSGMHEKTAEALLALGAPRI 417 Query: 385 VYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 V VSC+PATLARD + L Y + R+ +DMFPHT H+E++ L Sbjct: 418 VAVSCDPATLARDVKRLADR-YHVTRVRAVDMFPHTHHIETVALLE 462 >UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0F7_DESAC Length = 424 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 129/429 (30%), Positives = 210/429 (48%), Gaps = 19/429 (4%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 +I ++V L G G+ H+GK +F+ G +P + + ++KK+YARA++++ + S + Sbjct: 1 MIELTVTTLAHGGAGLGHHDGKAVFVFGAIPGDRILCQIVQNKKRYARAELIKVIEPSDQ 60 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHDVSE----VIADVPWGY 127 R+ P C HFG CGGC Q S + Q R K R + D V A +GY Sbjct: 61 RQEPACSHFGDCGGCDWQQLSYEQQCRWKQQIFVDSCVRHGRIDQGVIRDLVPAPQEFGY 120 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R R + P+ +GF + GS +++DV+ CP++A + A + R Sbjct: 121 RSRVQFKCYNSPQG--FILGFYRRGSHNVIDVRHCPVIALPIAAQMTAWRTLFDGSVYAS 178 Query: 188 HLGHVELVQATSGTLMILRH-TAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEM 246 + +++ + L + H + A L + + + + + + Sbjct: 179 GVSQIDVAVGSDDALRTIVHYRGAETEAFCAWLAGCLDAVDGAVLVQTGRKNPQILLQGQ 238 Query: 247 ----PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 D + L + P F QV+ N+++VAR +E +V +D VLDL+CGMGNF+L Sbjct: 239 VDLAIRVDEPPMELHYGPGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYCGMGNFSL 298 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 PLA +A +VVGVE + +N GL N TF+ ++E + + + D ++L Sbjct: 299 PLARRAGAVVGVEDYAPSISYADRNRDTLGLTNATFHACSVETFLGRW---RRTADVIVL 355 Query: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 DP R+GA + +++ P RIVYVSC+ TL RD AL YT+ + LDMFP T H Sbjct: 356 DPPRSGAREAVAGMMRCRPRRIVYVSCDQQTLMRDLTAL-AQSYTVTSIQALDMFPQTCH 414 Query: 423 LESMVLFSR 431 E + + R Sbjct: 415 TEVLAVLDR 423 >UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J1B5_COMTE Length = 519 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 157/471 (33%), Positives = 226/471 (47%), Gaps = 58/471 (12%) Query: 19 VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + V +D QGVAR +GK +FI G L E K + A + +S +R Sbjct: 48 LEVLSMDMDAQGVARKPDGKVVFIDGALTGEIVSANTHRKKNNWEAATLTEIHRESSQRV 107 Query: 78 TPRCP----HFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE-------VIADVPWG 126 TP CP H G CGGC+ QH V Q K L + H I WG Sbjct: 108 TPGCPNFGLHAGACGGCKMQHLHVAAQVAIKQRVLEDNLWHLAKVKPETLLRPIEGPAWG 167 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR R+RLS+ Y+ K ++ +GF + S I D++ C IL P ++A+L +RA + S+ A Sbjct: 168 YRFRSRLSVRYVAKKGKVLVGFHERKSRYIADMEVCKILPPHVDAMLMPMRALIASMDAR 227 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE- 245 +E+ T ++LRH PLS AD+++L F+ + + +L P + E Sbjct: 228 ETCPQIEVACGDHVTALVLRHLEPLSDADKQRLRDFAAEQNVQWWLQPKGPDTVHLMEEG 287 Query: 246 ----MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 G+ + F P DF QVN +N+ +V R+L LD + ++RV+D FCG+GNFT Sbjct: 288 GTQLSYGLPDFGITMPFKPTDFTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFT 347 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQN--------VTFYHENLEEDVTKQPWA 353 LP+AT A V+G+EG LV++ +N N + +F NL E A Sbjct: 348 LPIATMAREVLGIEGSETLVKRSHENYAANNVTRSEDDKLASTSFVARNLFEMTPAMLIA 407 Query: 354 KNGFDKVLLDPARAGAAGVMQQIIKLE--------------------------------P 381 DK L+DP R GA + + + + P Sbjct: 408 DGNSDKWLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFP 467 Query: 382 IRIVYVSCNPATLARDSEALL-KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 RIVYVSCNPATLARD+ L+ +AGY +++MFPHT H+ESM +F R Sbjct: 468 KRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 518 >UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Bacteria RepID=B9KXM9_THERP Length = 406 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 113/433 (26%), Positives = 186/433 (42%), Gaps = 51/433 (11%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 T + + + + D+ G + R +G+ +F +P E+ V + +D+K ++ +V+ Sbjct: 8 PTPRTLRTVPLHLEDMAYQGAAIGREDGRIVFAEYGIPGEDVLVAIEKDRKDHSLGRVIE 67 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVI---- 120 + SPER P CP+FG+CGGCQ QH + Q K L R+ K D V+ Sbjct: 68 VRTASPERVDPPCPYFGICGGCQWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVP 127 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + P+GYR AR S++ L R + + +C I+ P + +L +++ Sbjct: 128 SPQPYGYRNHARFSVDG---KGNLGYISRPGHGYRFLRIDRCLIMHPAINEVLRRLQE-- 182 Query: 181 GSLQAMRHLGH-VELVQA-TSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI 238 H+ H + + +G L++ + + Sbjct: 183 -----RAHVKHQLMVRYGVNTGELLVHPDVSAIDPTI----------------------- 214 Query: 239 LETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 G R S F Q N V ++++ LE + + V+D + G+G Sbjct: 215 --PSGQPAYHESLLGHRFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVG 272 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 F LA + A V+G+E P+ V Q N NV + +E + K D Sbjct: 273 TFAAFLAPRVARVIGIEESPSAVSDAQVNLDP--FDNVEYVQAKVEHVLGKLAV---RPD 327 Query: 359 KVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 V+LDP R G + ++ L P R++YVSC+PATLARD L+ GY + + LDMF Sbjct: 328 VVILDPPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMF 387 Query: 418 PHTGHLESMVLFS 430 P T H+ES+ Sbjct: 388 PQTYHIESVATLE 400 >UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU98_9FIRM Length = 498 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 117/497 (23%), Positives = 199/497 (40%), Gaps = 80/497 (16%) Query: 11 TTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 QII + +D +G+ R +G+ + + +P + ++ + +K A +++ Sbjct: 1 MKKGQIIEGVIERVDFPNKGIIRTEDGRQVIVKNTIPGQKVSASINKIRKGKAEGRLLEV 60 Query: 70 LSDSPERETPR-CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH----------DVSE 118 L SP C H G CGGC Q D Q K+ + +LM + Sbjct: 61 LEKSPLEGDKTGCVHAGECGGCTYQTLPYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGI 120 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVR 177 + GYR + S K L +G K GS DIV V+ C I+ +L Sbjct: 121 KESPRQTGYRNKMEFSFGDEFKDGPLALGMHKRGSFYDIVTVENCQIVDEDFRKILSVTL 180 Query: 178 ACLGS-----LQAMRHLGHVELVQAT----SGTLMILRHTAPLSSA-------------- 214 A +RH G++ + +G +++ T + Sbjct: 181 AYFREKNITYYHKLRHTGYLRHLLVRKAVKTGEILVDLVTTTQTDFPGIAAAQMDEVEST 240 Query: 215 ------------DREKLERFS----------------HSEGLDLYLAPDSEILETVSGEM 246 + E LE + H+ ++ +E + + G+ Sbjct: 241 LNNAQENAFAGTEEELLEGWKAALLAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQD 300 Query: 247 PWYDSN-GLRLTFSPRDFIQVNAGVNQKMVARALEWL-----------DVQPEDRVLDLF 294 +Y+ GLR +P F Q N+ + + A E++ + V DL+ Sbjct: 301 FFYEELLGLRFKITPFSFFQTNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLY 360 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 G G L+ A V+GVE + VE ++NA+LNGL N F ++ + + + Sbjct: 361 SGTGTIAQMLSPVAKKVIGVEIIEEAVEAAKENAQLNGLHNCEFIAGDVLKVIDSI---E 417 Query: 355 NGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 D ++LDP R G +++II+ ++VY+SC P +LARD E L GY + ++ Sbjct: 418 EKPDYIVLDPPRDGINPKALEKIIRYNVPQMVYISCKPTSLARDLEVLQARGYEVKKVCC 477 Query: 414 LDMFPHTGHLESMVLFS 430 +DMFP T H+ES+VL Sbjct: 478 VDMFPSTFHVESVVLMQ 494 >UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQU7_LAWIP Length = 470 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 97/450 (21%), Positives = 190/450 (42%), Gaps = 38/450 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + + S G+G+ R K +F+P +P + V +T ++ +V + + S Sbjct: 15 LVLDITSIVSDGRGLGRFENKVVFVPHTVPGQKVLVNITSVHSKFLEGEVKQIIKPSKYE 74 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVI----ADVPWGYR 128 P C H CGGC QH Q K AL R+ K + ++ + W YR Sbjct: 75 REPICIHAIQCGGCTWQHIQYKHQIIWKKQIIQDALERIGKVNNPVILDVIPSPCEWRYR 134 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ---- 184 + + P + +G ++ S +++ V C + + ++ VR + Q Sbjct: 135 NKMVFAFAPSPCLSTVLLGLKRVDSHEVIPVTDCLLQSKNTMKIVEIVRHWVRHEQTSLE 194 Query: 185 ----AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD----------- 229 +++ + + + +G +++ ++ K + + + L Sbjct: 195 KKILTLKYFRFLIIRETITGDILVELIVNKKNTLIENKFDEQALGKRLAQCLKGVEAIKG 254 Query: 230 LYLAPDSEILETVSGEMPW---------YDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + L+ +++ + E + L+ +F Q+N + + ++ L Sbjct: 255 IILSRRTQVSDIAYSEYIIWHEGERFLEEQVGDIVLSRGNDNFFQINTKATEILYSKILS 314 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + ++ V DL+ G+G+ L LA + V+GVE + A + +N G N +F Sbjct: 315 MAQLTGKELVWDLYTGVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQ 374 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSE 399 ++ + Q D V++DP RAG V++ +I+L P R +YVSCNP T ARD Sbjct: 375 DDAFSFIRSQIQKGITPDIVIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFARDIA 434 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 L + I + +D+FPHT H+E++ Sbjct: 435 ML-SPHFVIQQTQPVDLFPHTPHVETVSYL 463 >UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8REE9_9FIRM Length = 451 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 101/451 (22%), Positives = 200/451 (44%), Gaps = 30/451 (6%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 +Q++T ++ +D G G+ ++ + + G LPQE V + + +Q ++ + Sbjct: 2 LKKKQVVTGTIAHIDEMGNGIIKYREDMILVRGALPQEEVRVEIVKRLQQGYVGNILEII 61 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI------ADVP 124 S R P+C + CG CQ H Q + K + L K + A P Sbjct: 62 KPSEYRCKPKCSIYAKCGSCQLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVLCAGNP 121 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-- 182 + YR + + + ++++ GF + S I+ + C + + + ++ + + + Sbjct: 122 YHYRNKMIIGFQK-GRDKRIKAGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLA 180 Query: 183 ---LQAMRHLGHVELVQATSG-----TLMILRHTAPLSSADREKLERF--SHSEGLDLYL 232 R G + V G +++ ++ + A R+ +E +H + Sbjct: 181 IEIYDEDRRTGLLRHVLIRYGKVTKQIMVVFVVSSNVFPARRKLVEELLKAHPNITTIVQ 240 Query: 233 APDSEIL--------ETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + + G+ D GLR S + F Q+N + + +AL+ L Sbjct: 241 NVNPRKTSIVLGNEERILYGKGYIEDILCGLRFKISCKSFYQINHDQCEVLYTKALDKLM 300 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 + + VLD +CG+G + +A++ V+GVE V+ QNA+LN ++N+ F ++ Sbjct: 301 LTGNEVVLDAYCGIGTIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDA 360 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 +++ A+ D +++DP R+G++ + +L +I+Y+SCNP T RD L Sbjct: 361 GSFMSQLAKAQQTLDVLIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQ 420 Query: 403 KAGYTIA-RLAMLDMFPHTGHLESMVLFSRV 432 K GY + + ++DMFP T +ES+ + R Sbjct: 421 KLGYRVEGSMTLVDMFPFTNSIESVCMLVRK 451 >UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Neisseria RepID=D0WBI8_NEILA Length = 443 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 143/433 (33%), Positives = 227/433 (52%), Gaps = 19/433 (4%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + ++ LD G+GV + GKT+FI G LP E +T+ KKQ+ A+ V S Sbjct: 4 ETNVAEISALDYEGRGVTKVGGKTVFIKGALPSERVGFQITKQKKQFDEAEAVAIFKVSD 63 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVIADV---PWGY 127 ER P+C +F CGGC QH S Q K L R+ K +++ + Y Sbjct: 64 ERTVPQCRYFERCGGCSLQHISPAAQVAFKQRMMEEQLERIGKVRPQQILPPIYGYARHY 123 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R RAR S++ K +L++GF+ ++D+VD+ C +L + LP +R L L Sbjct: 124 RDRARFSVSLD-KLCRLKLGFQAKKTNDVVDISSCMLLPKPVSDKLPAIRGLLQDLAEEG 182 Query: 188 HL-GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE---GLDLYLAPDSEILETVS 243 + E + + T++ + + L + ++ ++ SE G ++L + + + Sbjct: 183 SVARFAEFYRGSEITVLNIAFKSKLRQNEENRIRQWFDSELSDGWQVWLQIEGGVSQPFY 242 Query: 244 GEM-----PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + G+ + F P DF Q+N N+ MV+RA++ LD++ +R+ DLFCG+G Sbjct: 243 PKTDKTLKYTLPEFGIEMPFRPGDFTQINTDTNRLMVSRAVKMLDIRQGERIADLFCGLG 302 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGF 357 NF+LP+ A VVG+EG LV + QNARLNG F NL + K + F Sbjct: 303 NFSLPMVKSGADVVGIEGAENLVRRAWQNARLNGCDGQTDFIAANLFDCTEKTVASWGRF 362 Query: 358 DKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM 416 DK+L+DP R+GA V++ + P +IVYVSCNP+TLARD+ L++ GY ++ +++M Sbjct: 363 DKMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSGAGIMNM 422 Query: 417 FPHTGHLESMVLF 429 F T H ES+ +F Sbjct: 423 FAQTSHTESVAVF 435 >UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=9 Tax=Thermotogaceae RepID=Y1094_THEMA Length = 439 Score = 383 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 117/442 (26%), Positives = 200/442 (45%), Gaps = 37/442 (8%) Query: 18 TVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 V + + + G G+A NGK + + G P E + +K+ ++ KVV L +S +R Sbjct: 4 QVRIQKMVNGGYGLAHLSNGKVVLVEGAYPGEEVLIKTYREKRDFSFGKVVSLLKESEDR 63 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIADVPWGYRRR 130 P C +FG CGGC + Q R K L L + +D+ + YR + Sbjct: 64 IKPPCRYFGRCGGCHWMDVKYETQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTK 123 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-- 188 +G +K S ++D+K C + +L V+ + L + Sbjct: 124 MEFHFQGRK------LGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNW 177 Query: 189 ------LGHVELVQA-TSGTLMILRHTAPLSSAD-----REKLERFSHSEGLDLYLAPDS 236 L H+ + A ++ M++ T S R L+RF + + Sbjct: 178 ETRKGVLKHLVIRYAFSTDQFMVIFVTKTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKD 237 Query: 237 EIL-----ETVSGEMPWYDSNGL-RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRV 290 ++ +T+ GE + R P F Q N + K++ +Q + V Sbjct: 238 SVVLRGPYKTLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVV 297 Query: 291 LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 LDL+ G+G F++ + AA V+ VE V+ G+ NA +N +N+ + +++ + + Sbjct: 298 LDLYAGIGTFSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNY 357 Query: 351 PWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 D+++LDP R+GA VM++I +L P RIVYVSC+P+TL RD + L++ GY+I Sbjct: 358 S---GRADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGYSIV 414 Query: 410 RLAMLDMFPHTGHLESMVLFSR 431 R+ DMFP T H+E+ V + Sbjct: 415 RVKPFDMFPQTYHVETAVTLVK 436 >UniRef50_A1VQF1 23S rRNA (uracil-5-)-methyltransferase rumA n=8 Tax=Burkholderiales RepID=RUMA_POLNA Length = 490 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 161/470 (34%), Positives = 230/470 (48%), Gaps = 60/470 (12%) Query: 19 VSVNDLDSFGQGVA-RHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 ++V LD QG+A R +GK +FI G LP E V K + +A + +S +R Sbjct: 25 LTVESLDIEAQGIAHRADGKVVFIEGALPFEQVTANVYRKKSSFEKATLTAIYRESSQRV 84 Query: 78 TPRCPHFG----VCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWG 126 TP CPHFG CGGC+ QH + Q K L ++ ++ I W Sbjct: 85 TPACPHFGMHTGACGGCKMQHLHIGAQVAVKQRVLEDNLRFIGKVKADNLLRPIEGPAWH 144 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR RARLS+ Y+ K +GF + S+ + D+ +C ++ + +L +R + S+ A Sbjct: 145 YRYRARLSVRYVRKKGTALVGFHERKSAYVADMTECHVVPQHVSDMLVPLRGLISSMDAR 204 Query: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREK----------LERFSHSEGLDLYLAPDS 236 + +EL T M+LRH PLS AD + L+ + S GLD D+ Sbjct: 205 ETIPQIELACGDDLTAMVLRHMEPLSVADLARLRAFAAANAGLQWWVQSGGLDTVKLLDA 264 Query: 237 EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 ++ E G G+ + F P DF QVN +NQ +V+RAL L VQP +RV+D FCG Sbjct: 265 QVAELSYG----LPEFGITMPFKPTDFTQVNPHINQVLVSRALRLLGVQPTERVIDWFCG 320 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG--------LQNVTFYHENLEEDVT 348 +GNFTLPLAT+A V+G+EG LV + ++N N L+ F NL E Sbjct: 321 LGNFTLPLATRAREVLGIEGSEVLVARSRENYERNKASSHVRPALEATKFVARNLFEMTP 380 Query: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE-------------------------PIR 383 +K L+DP R GA + + + L P R Sbjct: 381 AMLVKDGAAEKWLVDPPREGAFELFKSLAALHQQVVTGVPCDDGIHQQSLALGGWTPPSR 440 Query: 384 IVYVSCNPATLARDSEALLK-AGYTIARLAMLDMFPHTGHLESMVLFSRV 432 IVYVSCNPATLARD+ L++ GY +++MFPHT H+ESM +F R+ Sbjct: 441 IVYVSCNPATLARDAGVLVEGGGYRCTAAGVVNMFPHTAHVESMAVFERL 490 >UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XV5_DESDG Length = 457 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 112/456 (24%), Positives = 187/456 (41%), Gaps = 43/456 (9%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 I+ + + L + G+ +ARH +FI LP + VT +K YA A ++ Sbjct: 7 PAEGDILHLQPHTLTTGGRALARHGRLAVFIDNALPGQTVTARVTRCRKNYAEATLLGVT 66 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIAD 122 + + + P C HF CGGC QH +Q K + + + + Sbjct: 67 AAADYQTEPFCRHFAECGGCSWQHMPYAMQLEWKQRLVHDAFVRIGRIAEPPVLPALASP 126 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC--- 179 +R + + +++G R GS D++++ +C + + + ++ VR Sbjct: 127 AQRFFRNKMEFAFENDSPQG-IRLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQ 185 Query: 180 --LGSLQAMRHLGHVELVQAT----SGTLMILRHTAP-----------------LSSADR 216 L + G + +G M+ T P L + Sbjct: 186 TGLTAWDVRSGEGFFRYLVIRETLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESG 245 Query: 217 EKLERFSHSEGLDLYLAPDSEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMV 275 E + F H E A +E +G+ + NG T +P F Q N + + Sbjct: 246 EGITSFIHGERRSPVQAAYAEKTLYSTGDSHLTEQLNGRTFTMAPHAFFQTNTAATEILS 305 Query: 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335 A ++ + DL+CG+G L +A Q SV G+E V+ NAR + Sbjct: 306 RTAADYAGQGG--VLWDLYCGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQQVPQ 363 Query: 336 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATL 394 F ++ + + K D V+ DP RAG V+ +I P +IVY+SC+PAT Sbjct: 364 ARFLAGDVRRLLIRH---KEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCDPATQ 420 Query: 395 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 ARD+ AL + Y + + +DMFPH+ H+ES+ LFS Sbjct: 421 ARDAAALTDS-YRLEAVQPVDMFPHSAHIESVALFS 455 >UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31DJ1_THICR Length = 407 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 152/425 (35%), Positives = 220/425 (51%), Gaps = 42/425 (9%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + +TV + L G+GV R NGK +F+ +P + AE+ +T + Y AK+VR + S Sbjct: 2 KTVTVKIETLSHDGRGVGRLNGKAIFVEEAVPGDVAEIRITGRQPSYEEAKIVRLIDSSE 61 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGY 127 +R CPH+ CGGCQ QH S+D Q++ K++ + + + Y Sbjct: 62 DRVEAFCPHYETCGGCQLQHLSIDAQRKWKASHFYTALSKAVNMKACQIEAPLVGHDHAY 121 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 RRRARL L ++ + GFR GS++IVD++QCP+L P L L + R + A R Sbjct: 122 RRRARLVLGKNKTDKEARFGFRAKGSNEIVDIEQCPLLTPALNEALNQKRTAVLP-HASR 180 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMP 247 L + +V A +G + G Sbjct: 181 ALKEISVVDADNG---------------------------IFWSDQAVDSSTWPSYG--- 210 Query: 248 WYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ 307 NGL L F + F+QVNA +N++MV +AL+WLD+ E RVLDLFCG+GNFTLP+A Q Sbjct: 211 ---VNGLTLNFPAQGFVQVNAEMNEQMVNKALDWLDLNKEQRVLDLFCGVGNFTLPIAQQ 267 Query: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE-EDVTKQPWAKNGFDKVLLDPAR 366 VVG+EG LV+ Q NA + TFY +L + + + K +D+VLLDP R Sbjct: 268 VKEVVGIEGETDLVQMAQHNASRAHCEQATFYQADLFKDVTPQNWFRKQKYDRVLLDPGR 327 Query: 367 AGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 GA + + + +L+ +IVYVSCN +TL RD + L K GY + + M+DMFPHT H E M Sbjct: 328 QGAYQLCKGLGQLKADKIVYVSCNASTLIRDVKELEKQGYQLKKAIMVDMFPHTSHTEVM 387 Query: 427 VLFSR 431 + Sbjct: 388 AQLIK 392 >UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDB5_9FIRM Length = 431 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 99/435 (22%), Positives = 198/435 (45%), Gaps = 18/435 (4%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + V+ D GV + + +F+P LL E A++ + + K+YA ++ L Sbjct: 1 MKKNEEYIVTCIDDTDLNSGVVKIDDMVVFVPNLLIGEKAKIKIVKVNKKYAFGIIIELL 60 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--HDVSEVIADVPWGYR 128 S R+ C CGGCQ QH S Q K + +L + + D PW YR Sbjct: 61 KPSINRQELTCEVAKTCGGCQLQHMSYAYQLDYKYKHVKKLFEGIEVKPILGMDNPWYYR 120 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 +A+ + K ++QMGF + S+D+V K+C I + + ++ + +L+ + Sbjct: 121 NKAQFPV--KIKDGKVQMGFYRQHSNDVVTCKECKIQDHVINEVFSFIQKKI-TLKMAQD 177 Query: 189 LGHVELVQATSGTLMILRHT---APLSSADREKLERFSHSEGLDLYLAPDSEIL------ 239 L HV + +++ + ++ + S + F++ + ++ + Sbjct: 178 LRHVFIRHSSTDEIQVVFIGKNEKNIISLSDQLKNTFANITSIVFNYNTRNDNVILGDTY 237 Query: 240 ETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + + G + + G ++ + F QVN + + ++A++ ++ + +D++ G G Sbjct: 238 KVLYGNDYIIEECLGNKVKLHFKAFFQVNPKQMEVLYSQAIKAANLTGNETCIDMYAGTG 297 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 + ++ A SV+GVE V V+ N ++N L + + ++ + ++ D Sbjct: 298 TIGMAVSQHAKSVIGVEIVKEAVDNANDNTKMNHLDHCHYVCQDATDF--AHDHKEDKID 355 Query: 359 KVLLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 + +DP R G ++ I ++P +IVYVSCNP TL+RD + + GY + +DMF Sbjct: 356 VIFIDPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYVQPVDMF 415 Query: 418 PHTGHLESMVLFSRV 432 T LE + +++ Sbjct: 416 CQTIGLECVAKLTKI 430 >UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bacteria RepID=A9KP69_CLOPH Length = 463 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 104/466 (22%), Positives = 185/466 (39%), Gaps = 46/466 (9%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 V ++ +G+ + + + + + + V + +K + +++ + Sbjct: 1 MKKGTECIGLVERIEFPNKGIVMVDDEKIIVKNAITGQKVRFVVNKVRKGKSEGRLLEVV 60 Query: 71 SDSPERE-TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH----------DVSEV 119 S C HFG CGGC Q + Q + K+ + +L+ Sbjct: 61 EKSSLETKEAVCSHFGDCGGCTYQTIPYETQIKIKADQVKKLIDEVIATDNKEYEFQGIE 120 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRA 178 + + +GYR + S K L +G K GS DIV C ++ +L V + Sbjct: 121 GSPLEFGYRNKMEFSFGDEFKDGPLALGLHKKGSFYDIVTTSDCKLVHEDYNRILGCVLS 180 Query: 179 C-----LGSLQAMRHLGHVEL----VQATSGTLMILRHTAP----LSSADREKLERFS-- 223 L M H G++ A +G +++ T L + + E L + Sbjct: 181 LAKEYNLNYYHKMSHEGYLRHLLIRRAARTGEILVSLITTSQTNVLVNGEEEFLNKLRES 240 Query: 224 --------------HSEGLDLYLAPDSEILETVSGEMPW-YDSNGLRLTFSPRDFIQVNA 268 H+ L S+ + + G+ + GL+ S F Q N+ Sbjct: 241 LKNLSLEGSIVGILHTVNDSLADVVQSDRTDILDGQDFIFEEVLGLKFKISTFSFFQTNS 300 Query: 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA 328 + + +++ + + DL+ G G LA A V+GVE V V ++NA Sbjct: 301 LGAEVLYNCVRDFVGETKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENA 360 Query: 329 RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYV 387 LN L N F ++ + + + D ++LDP R G + +II R+VY+ Sbjct: 361 SLNKLTNCEFIAGDVLKVIDTI---EEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYI 417 Query: 388 SCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 SC P++LARD L + GY + ++ +DMFP T H E++ L +R K Sbjct: 418 SCKPSSLARDLVVLQERGYWVEKVRCVDMFPCTVHTETVCLLNRTK 463 >UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=88 Tax=Lactobacillales RepID=Y1717_STRR6 Length = 451 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 104/452 (23%), Positives = 194/452 (42%), Gaps = 32/452 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 +Q I + + + G+G+ + +F+PG L E+ +T ++ + AK+++ Sbjct: 2 NLKVKQKIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEDIYCQITSIRRNFVEAKLLKV 61 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE----------V 119 S R P C + CGGCQ H D Q K+ L + +K + Sbjct: 62 NKKSKFRIVPSCTIYNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTI 121 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 P YR A+L Q++ G S +V++K C + + + + ++ Sbjct: 122 GMQEPKYYR--AKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAEL 179 Query: 180 LGSLQAMR-------HLGHVELVQAT-SGTLMILRHTAP---LSSADREKLERFSHSEGL 228 L Q + + + +A +G + I+ T L+ +E ++ F + Sbjct: 180 LTYHQIPITDERKVLGVRTIMVRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTV 239 Query: 229 DLYLAPD------SEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEW 281 + E E + G E + SPR F Q+N + + + A++ Sbjct: 240 AVNTNTAKTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKA 299 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 LDV ED ++D +CG+G A + ++ G++ +P +E ++NA+ G N + Sbjct: 300 LDVDKEDHLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAG 359 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEA 400 EE + + D +++DP R G ++ I+ P ++VY+SCN +TLARD Sbjct: 360 TAEEIIPRWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVR 419 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 L++ Y + + +DMFPHT E++V + Sbjct: 420 LVEV-YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ2_9FIRM Length = 453 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 125/448 (27%), Positives = 191/448 (42%), Gaps = 31/448 (6%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 T QI+T+ + L S G GVA +G+ +F+PG P + +V + + K YA ++ + Sbjct: 4 TKNQILTLEIESLSSDGNGVAHSDGQAIFVPGTAPGDTVKVRIVKPMKTYAFGRLESLRA 63 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDV---SEVIADVP 124 P+R P CP G CGGC +H S + R+K A ARL K D+ + A Sbjct: 64 SGPDRIIPDCPVAGPCGGCGLRHISYQAECRAKTCFVQDAFARLGKLDLPVHPVLGAPDI 123 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-- 182 YR + +L + + L GF S I+ C + + L + L Sbjct: 124 NRYRNKVQLPVGTD-ENGHLTTGFFAGRSHRIIACPDCKLQPEWMNRLAARACELLEKAG 182 Query: 183 ---LQAMRHLGHVELVQATSG------TLMILRHTAPLSSADR--EKLERFSHSEGLDLY 231 H G V + G L + + L R E+L+R + + Sbjct: 183 ATSYDEESHTGLVRHLFLRQGWHSGQRLLCFILNGRALPDEQRICEELQREFDLTTVLVN 242 Query: 232 LAPDSEI------LETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 TV G D G+ L +F QVN + + A+A + + Sbjct: 243 ENTARTNVILGPHTHTVLGPGVIEDTLAGVSLRMGVHEFYQVNTPAAEVLYAQARTYAAL 302 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL--QNVTFYHEN 342 QPED +LDL+CGMG L + ++GVE VP VE + A GL Q F ++ Sbjct: 303 QPEDFLLDLYCGMGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAARLGLSPQRADFRCQD 362 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 + D +++DP R G +Q I+++ P +V VSCN AT ARD+ L Sbjct: 363 AGAAAAQLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAARDTRWL 422 Query: 402 LKAGYTIARLAMLDMFPHTGHLESMVLF 429 + GY + +D+FP T H+E +V Sbjct: 423 TEHGYRAMEVQPVDLFPRTRHVECVVKL 450 >UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embryophyta RepID=Q9LU28_ARATH Length = 554 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 114/486 (23%), Positives = 191/486 (39%), Gaps = 66/486 (13%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNG--KTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 + + + L G+G+ + +G + LP E VT K YA ++ Sbjct: 67 PKRGETVELVCESLGFKGKGICKVDGTGYVVMCDRALPGERFLGRVTRRKGSYAEVTKMK 126 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV------------ 116 +S + C + CGGC+ Q+ S + Q R+K + L++H Sbjct: 127 TISPHKDLVEAPCEYASYCGGCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIV 186 Query: 117 --SEVIADVPWGYRRRARLSLNYLPK------------TQQLQMGFRKAGSSD-IVDVKQ 161 V D+ + YR + S + +G G D +++V + Sbjct: 187 LKPIVACDIQFHYRNKMEFSFGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDK 246 Query: 162 CPILAPQLEALLPKVRAC-------LGSLQAMRHLGHVELVQATSG--------TLMILR 206 C + + +L V+ C L H+G ++ + +G LM+ Sbjct: 247 CLLQSEPGNLVLAAVQDCWRDPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNF 306 Query: 207 HTA----PLSSADREKLERFSHSEGLDLYLAPD------SEILETVSGEMPWYDSN-GLR 255 T+ L +++ + + E T+ G+ + GL Sbjct: 307 VTSSYKPELLKPLVDRISSIPQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLT 366 Query: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASVVG 313 S F Q N + + E ++ + + VLDLFCG G L LA +A V G Sbjct: 367 FQISANSFFQTNTHQAEVLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYG 426 Query: 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GV 372 E VP + +NA++NG++N TF +L + D V+ DP R G + Sbjct: 427 YEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKL 486 Query: 373 MQQIIKLEPIRIVYVSCNPATLARDSEALL--------KAGYTIARLAMLDMFPHTGHLE 424 ++ ++KL+ RI+YVSCNPAT ARD + L K Y + + +DMFPHT H+E Sbjct: 487 IKFLLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIE 546 Query: 425 SMVLFS 430 + L Sbjct: 547 CVCLLE 552 >UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 Tax=Streptococcaceae RepID=YWFF_LACLA Length = 513 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 96/475 (20%), Positives = 190/475 (40%), Gaps = 55/475 (11%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 Q + + + + G+G+ +G+ +FIP LP E V +TE+ + ++RAK+V+ Sbjct: 3 NLKIGQKLQLEIERMGINGEGIGVISGRLVFIPYALPGEEVLVEITENARNFSRAKLVKI 62 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE----------V 119 + SP R P+ + H S +Q K + + ++ + Sbjct: 63 IEKSPNRVKPQDRAYHEMSQSHIMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATL 122 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 + GYR + + + + G + G+ +V++ C + P+ + ++ + Sbjct: 123 GMENTLGYRNKLQFQVR-RLNDGTVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRL 181 Query: 180 LGSLQAM----RHLGHVELVQAT----SGTLMILRHTAPLSSADREKLERFSHS------ 225 + R +G + V +G + I+ T+ D + Sbjct: 182 IEKFDLPVYDERKIGGIRTVMVRRSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQK 241 Query: 226 ------------------EGLDLYLAPDSEILETVSGE----------MPWYDSNGLRLT 257 E + + + + GE Sbjct: 242 NSFVKFDKMLSALTEEFEEIVTVAVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFE 301 Query: 258 FSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 SPR F Q+N+ + A++ L+ + +DRV+D +CG+G +A + SV G++ Sbjct: 302 LSPRAFYQLNSEQANVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDIT 361 Query: 318 PALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQI 376 P + ++NA+ GL+N + E + + + +++DP R G +++ I Sbjct: 362 PESIFDARENAKRLGLKNCHYEIGKAERIIPNWNKSGHRATAMIVDPPRTGLDDALLETI 421 Query: 377 IKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 K P ++VYVSCN +TLA+D L Y + + +DMFPHT E++V ++ Sbjct: 422 TKFPPEKMVYVSCNVSTLAKDLVVLANF-YKVEYIQSVDMFPHTARTEAVVKLTK 475 >UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=Lactobacillales RepID=B1MWX6_LEUCK Length = 498 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 113/453 (24%), Positives = 192/453 (42%), Gaps = 35/453 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 Q +++ L G+G+ K +F+PG+LP E A V VT+ + +Y AKV++ Sbjct: 47 VRIGQNFPLTIKRLGINGEGIGYFKRKIVFVPGVLPDEVAVVKVTDVQPKYIAAKVLKIR 106 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE----------VI 120 SP R P GG + +H + Q K +A+ ++ + + Sbjct: 107 EKSPNRVKPLDTFADEVGGFELEHMTYSAQLAFKKDVIAQSLEKFQPKGWSDYDLRDTIG 166 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 P+ YR +A+ + + L +G K GS ++VD+ +P +L VR L Sbjct: 167 MANPYEYRNKAQFPVRKI--DDVLSVGMYKRGSHELVDLPIVHTQSPATMKVLRTVRDLL 224 Query: 181 GS-----LQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKL-----ERFSHSE 226 ++ G V+ + A +G + + T L + Sbjct: 225 DKLSVSIYNEDKNRGTVKTIVARVSHTTGDVQLTFVTNTDGFPGDVALIAAINQALPEVN 284 Query: 227 GLDLYLAPDS-------EILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 G+ P E ++ + G SPR F+Q+N + AL Sbjct: 285 GIFQNFNPGRTSLVWGEETIKLWGKDYIEETVMGKTFQLSPRAFMQLNHTQMTVVYNEAL 344 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 L++ D+++D + G+G L LA +A V G+E +P V+ NA++N + N + Sbjct: 345 SALNLTHADKLVDAYAGVGTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYE 404 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVM-QQIIKLEPIRIVYVSCNPATLARDS 398 E K D +++DP R G + ++II+ +P + VY+SCN +TLARD Sbjct: 405 VGTAEVLFPKWQAEGWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDL 464 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L KA Y + + +DMFP T E +V +R Sbjct: 465 VDLTKA-YKVDYIQSIDMFPQTARWEGVVKLTR 496 >UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG03_THEYD Length = 389 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 110/426 (25%), Positives = 199/426 (46%), Gaps = 54/426 (12%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I +++ + G+ + +HNGK +F+P +P E + + +D+K Y RA+++ + S Sbjct: 3 EIEITLTGIAHLGEAIGKHNGKVVFVPYAIPGETVKAKIIKDEKDYCRAEILDIIEPSFF 62 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEVI------ADVPW 125 RE P C FG+CGGC QH + Q + K L R+ + E A+ P+ Sbjct: 63 RENPSCKLFGICGGCSFQHVAYSYQIKLKEIVVMEQLKRIGGFENPEDFTNLTLKAESPY 122 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR RA S+ +Q +GF+ G+ + V+ C I+ ++ +L + L + Sbjct: 123 NYRNRADFSI-----NRQNLLGFKIRGTHKFLHVECCHIMHDKINKML----SLLQGKKP 173 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 R ++ + + + P+ + +E +G+ Sbjct: 174 KRKSHNITIRYGINTG---------------------------TWLIQPEMDTVEIETGQ 206 Query: 246 MPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 +Y+ G S F QVN +K++ L ++ Q + V+D + G+G FT+ L Sbjct: 207 KFYYERLLGKDFIISAPSFFQVNTYQAEKLIQTVLNYIT-QEDKTVIDAYAGVGTFTVFL 265 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A +A V+ +E + + Q N + N+T+ + EE + +K D +++DP Sbjct: 266 AQKAEKVIAIEESRSAYKDAQINIK--NFDNITYLCKKTEEAL---FESKINGDAIVIDP 320 Query: 365 ARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 R G V+Q I + + +++YVSC P+TLARD + L + GY + + +DMFP T H+ Sbjct: 321 PRVGCMKEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLKEIQPVDMFPQTYHI 380 Query: 424 ESMVLF 429 E++ L Sbjct: 381 ENVALM 386 >UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevotella RepID=C9Q1J0_9BACT Length = 502 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 126/476 (26%), Positives = 213/476 (44%), Gaps = 47/476 (9%) Query: 4 FYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYAR 63 Y A++R + V++ D+ + G+ +AR N +F+P ++P + ++ + + K Y Sbjct: 28 IYMARKRKDFPILENVTITDVAAEGKALARVNDMVVFVPFVVPGDVVDLKIRKKKHSYCE 87 Query: 64 AKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------D 115 A+VVR + S R P C HFGVCGGC+ Q+ + Q R+K + + Sbjct: 88 AEVVRFVQYSDTRVEPVCQHFGVCGGCKWQNLPYEEQLRAKQQQVYDQLSRISHVQLPTF 147 Query: 116 VSEVIADVPWGYRRRARLSLNYLPK------------TQQLQMGFRKAGSSD-IVDVKQC 162 + + + YR + + +GF G+ D I+ +++C Sbjct: 148 YPIMGSQLTLHYRNKLEFGCSNKRWLTREEVASGATFDTMNAIGFHITGAFDKILPIEKC 207 Query: 163 PILAPQLEALLPKVRAC-----LGSLQAMRHLGHVE---LVQATSGTLMILRHTAPLSSA 214 ++ + ++R + + G + + + +G M+L ++ Sbjct: 208 WLMDDLQNQIRNEIRDYALTKGISFFDLRQQTGLLRDVMIRNSDTGEWMVLVQFHFETAT 267 Query: 215 DREKLERF-----SHSEGLDLYLAPDSEILETVSGEMPWYDSNG----------LRLTFS 259 D++ E H + L D++ G++P + G LR Sbjct: 268 DQQTAEALLAHVGEHFPQITSLLWVDNQKCNDTFGDLPVHVFKGNGHIFEVMEDLRFKVG 327 Query: 260 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 P+ F Q N + A + + + V DL+ G G +A QA VVGVE VP Sbjct: 328 PKSFYQTNTQQAYHLYDVARRFASLSGTETVYDLYTGTGTIANFVARQAKKVVGVEYVPE 387 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN-GFDKVLLDPARAGAA-GVMQQII 377 +E + N+ LNG+ N TFY ++++ + + A N D ++ DP RAG V++ II Sbjct: 388 AIEDAKVNSELNGISNTTFYAGDMKDILNDEFIANNGQPDVIITDPPRAGMHADVIETII 447 Query: 378 KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 + P RIVYVSCNPAT ARD AL Y + + +DMFPHT H+E++VL R Sbjct: 448 RANPQRIVYVSCNPATQARDLIAL-DERYAVTAVQPVDMFPHTPHVENVVLLERRN 502 >UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G9_UNCTG Length = 449 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 116/450 (25%), Positives = 192/450 (42%), Gaps = 37/450 (8%) Query: 13 TRQIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 +II VS + G+ + R +G LF GLLP E A+V V ++KK + A + S Sbjct: 4 KNKIINVSAEKIVFPGRSLCRCSDGIVLFSEGLLPGEAADVLVIKEKKTFREALLKNITS 63 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV----SEVIADVPWGY 127 S ER P CP FG CGGC Q+ S + Q + K ++ L+ +I+ W Y Sbjct: 64 KSAERIEPLCPSFGFCGGCSFQNISYESQIKYKQEYISELLNFAGVKISKILISPQIWHY 123 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACLGS---- 182 R + S +G G + V V C I ++ V+ Sbjct: 124 RNKMEFSF--FNNKGIADLGLHCKGMFNRYVSVPPCFIADKGFLQVVETVKRFANGNNFS 181 Query: 183 -LQAMRHLG---HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEG---LDLYLAPD 235 H G H+ L +A + ++ + + LE +Y + Sbjct: 182 VYNNKTHEGFFRHLVLRKAGNNNQFLINVITNVVDCESVFLEPLIKELSEFSCSIYWTSN 241 Query: 236 SEILETVS--------GEMPWYDSN-----GLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 + V G+ + SP F Q N+ + + L L Sbjct: 242 GRKSDAVLADRLTLMCGKPFITERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLL 301 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 + +LDL+CG G + +A V+GVE + ++ ++NA N + N FY + Sbjct: 302 NPSKYTVLLDLYCGTGAIGISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASD 361 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E+ + + K+ FD V++DP R+G +++ +++ + RI+YVSCNP+TLARD + + Sbjct: 362 AEDWIKE---NKSCFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARDLQLI 418 Query: 402 LKAGY-TIARLAMLDMFPHTGHLESMVLFS 430 + I + +DMFP T H+E++VL Sbjct: 419 TENSKCKIKEIIPVDMFPQTYHIETVVLLE 448 >UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTT0_9FIRM Length = 518 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 100/437 (22%), Positives = 194/437 (44%), Gaps = 29/437 (6%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + + + D D G G+ + + +F+ + + T+T+DKK + + +V + L Sbjct: 2 KNKELIGQIIDFDYKGMGMTKLDDIPVFLDKGVIGDKVSYTITKDKKSFYKGRVTKILKK 61 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI-------ADVPW 125 S +R C +F CGGC + + K ++ ++ I ++ + Sbjct: 62 SKDRVESPCKYFNKCGGCDFLNYKYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKTF 121 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR + + + ++G S +IV ++ C + + L L + Sbjct: 122 NYRNNMQFQV------KNGKIGLYMKNSKEIVPIEHCLMQSTNANKTL----KILTKFKN 171 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEI------- 238 + + + + +M++ + + L + + +Y ++ Sbjct: 172 LEKIKTLGIRTNYKDQVMLIISSKEKINKLNLILGDLIDANVVSIYENINNRKNAHYGDE 231 Query: 239 LETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 + G+ + N L SP F QVN + + +A+E+L V+ +++ DL+ G+ Sbjct: 232 FNLLYGQEYLEEKINKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGV 291 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-QPWAKNG 356 G +L +A++ A +GVE V +E + NA+ N L F EE + K Q K Sbjct: 292 GTLSLEIASRKAQTLGVEIVEEAIEDARINAQKNKL-QARFICGKSEEILEKIQTDEKIK 350 Query: 357 FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 DK+L+DP R G ++ + K +IVY+SCNPATLARD + L + Y + ++ + D Sbjct: 351 MDKILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEK-YKVEKVEIFD 409 Query: 416 MFPHTGHLESMVLFSRV 432 +FP+T H+E + L S++ Sbjct: 410 LFPYTSHVEVITLLSKL 426 >UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Variovorax paradoxus S110 RepID=C5CUM3_VARPS Length = 482 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 162/457 (35%), Positives = 228/457 (49%), Gaps = 46/457 (10%) Query: 19 VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + V LD QGVA G +FI G LP E + V K + + V +S +R Sbjct: 23 LKVESLDLDAQGVAHNAEGMVVFIEGALPFEEVQFNVHRRKNNWEQGTVTAIRRESSQRV 82 Query: 78 TPRCPHFG----VCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWG 126 P CPHFG CGGC+ QH Q K AL + H +V + W Sbjct: 83 RPGCPHFGLHTGACGGCKMQHLDEAAQVAVKQRALEDNLWHLGKVRPDNVLRPLEGPAWH 142 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186 YR RARLS+ ++ K + +GF + S + D++ CP+L Q+ +L +RA +GSL A Sbjct: 143 YRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQVSDMLMPLRALIGSLDAR 202 Query: 187 RHLGHVELVQAT-------SGTLMILRHTAPLSSADREKLERFS-HSEGLDLYLA---PD 235 +EL ++LRH PLS+AD +L+ F+ + G+ +L PD Sbjct: 203 ETCPQIELACGDAPGTTSLGTIALVLRHLEPLSNADIGRLKAFAAQNAGVQWWLQAKGPD 262 Query: 236 SEILETVSGEMPWYDS--NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 + L G Y+ G+ + F P DF QVN +N+ +V +AL LDVQ ++RV+D Sbjct: 263 TVKLLEEGGMPLSYELPQFGVTMPFKPTDFTQVNPHINRALVGKALRLLDVQADERVIDW 322 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG--------LQNVTFYHENLEE 345 FCG+GNFTLPLA++A V+G+EG LV + N N L F NL E Sbjct: 323 FCGLGNFTLPLASRAREVLGIEGSDTLVARASDNFSKNQPATSARRALSATRFVARNLFE 382 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLE------------PIRIVYVSCNPAT 393 A DK L+DP R GA + + + L P RIVYVSCNP+T Sbjct: 383 MTPAMLVADGSADKWLVDPPREGAFALAKAMADLHLQPELRTDGWTPPKRIVYVSCNPST 442 Query: 394 LARDSEALL-KAGYTIARLAMLDMFPHTGHLESMVLF 429 LARD+ L+ +AGY +++MFPHT H+ES+ +F Sbjct: 443 LARDAGLLVHQAGYRCTFAGVINMFPHTAHVESIAVF 479 >UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8C0_9BACT Length = 541 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 135/452 (29%), Positives = 213/452 (47%), Gaps = 44/452 (9%) Query: 18 TVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + ++ ++S GQG+ R +G+T+F+ G LP E A + V ++KK Y +A+V R + +PER Sbjct: 3 QLYIDRMNSAGQGIGRAADGRTVFVEGALPGETAVIAVRQEKKSYIQARVERVVEANPER 62 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP----WGYR 128 P C + CGGCQ QHA LQ + K + AL R+ ++ I VP W YR Sbjct: 63 REPSCRWYRSCGGCQLQHAEYTLQCQIKAMLAADALRRIGGFEIDGEIPCVPSRNEWRYR 122 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-----L 183 +A + + +GF K GS +IV V +CP++ + L V+ + Sbjct: 123 NKASFPVRARGRAGD--VGFFKRGSHEIVPVDRCPVICDRANKLYAVVKNMINYGRFCCY 180 Query: 184 QAMRH---LGHVELVQATSGTLMILRHTA----------PLSSADREKLERFSHSEGLDL 230 + L HV + A G ++L A L ERF GL + Sbjct: 181 DEKSNSGWLRHVVIRSARDGEELLLILVAAARPEGGALESLERLYDHLKERFPELRGLVV 240 Query: 231 YLAPD-------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + PD +E + + RL + F Q N G +++ A A + Sbjct: 241 NVNPDEGNVIIGAESVLVKGEDRLTERLGNFRLDYDGTSFFQANPGQAEQLFAYAASLAE 300 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 Q +L+L+CG+G T L+ +A ++ VE + V ++N N ++ +T Sbjct: 301 GQN---LLELYCGVGALTAFLSRKAKTIRAVEVWASAVALARENGESNRIEGLTVLQGAA 357 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E V P G D V++DP RAG +++ I R++Y+SCNPATLARD+ L Sbjct: 358 ENVVA--PADLEGIDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCNPATLARDAALLR 415 Query: 403 KAGYTI--ARLAMLDMFPHTGHLESMVLFSRV 432 AGY + L + DMFP T H+E++ L S++ Sbjct: 416 DAGYVLDMDSLKVFDMFPQTCHVETVCLLSKL 447 >UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E1X6_9CHLO Length = 473 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 127/477 (26%), Positives = 193/477 (40%), Gaps = 60/477 (12%) Query: 12 TTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKK--QYARAKVVR 68 + ++T+ L G+GV + G +F +P E E VT K ++A A V Sbjct: 1 KSGDVLTLECTSLAFGGRGVCKLPGGFVVFCDRAVPGETLEARVTSLKGGGRFAEATKVS 60 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV------------ 116 +S R CPHF CGGC Q + Q K + +M Sbjct: 61 SISPCEHRTAAPCPHFERCGGCTWQDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVG 120 Query: 117 SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDV---KQCPILAPQLEAL 172 V +D YR + + + + +G R +G+ D+V++ C + P + + Sbjct: 121 DCVPSDKTERYRNKMEFAFGPGANGRGVVIGLRPSGNHSDLVEIGNPDGCLLQHPVADEV 180 Query: 173 LPKVRA---------CLGSLQAMRHLG-----HVELVQATSGTLMILRHTAPLSSADRE- 217 L RA L + G V + +G + A + D E Sbjct: 181 LRGCRAHLDSNGNSSLLDAFNRRTGEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDED 240 Query: 218 -----KLERFSHSEGLDLYLAPD-------SEILETVSGE-MPWYDSNGLRLTFSPRDFI 264 E + G+ D E +E +SG G+ S F Sbjct: 241 AALRGLAEAIAKVRGVASSGGGDADGEGWSGEDVEVLSGAATLPMKLRGVTFALSAPSFF 300 Query: 265 QVNAGVNQKMVARALEWL--DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322 Q N +K+VA + + VLDLFCG+G L +A +A V G E VP V+ Sbjct: 301 QTNTDQAEKLVAAVEDACGFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVK 360 Query: 323 KGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEP 381 ++NA NG+ N TF + + K + G D V+ DPARAG + ++++ + Sbjct: 361 DAERNAEANGITNATFRRGD----LAKLKASLPGPDIVIADPARAGMDESLVKVLRSIGA 416 Query: 382 IRIVYVSCNPATLARDSEAL------LKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 RIVYVSCNPAT ARD L A Y + +DMFPHT H+E++V+ R+ Sbjct: 417 ERIVYVSCNPATQARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVLDRI 473 >UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFJ7_ACHLI Length = 451 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 104/453 (22%), Positives = 182/453 (40%), Gaps = 35/453 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 +++ I+ + V + G+G+ + +FI LP E +TE A AKV+ Sbjct: 2 QQKIRLNDILEIDVKRMGINGEGIGYYERLAIFIDNALPGEKVLAQITEVFPNRATAKVL 61 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV---------SE 118 + L SP R P CP + CGGCQ QH + K + + + V Sbjct: 62 QTLEKSPNRVKPLCPVYDACGGCQVQHFDYNAMLNQKKDIIKKALDRYVKRYDAHIISDT 121 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 + D P YR +A L L + + G S+ V + C + ++ + + + Sbjct: 122 IGMDNPKNYRNKASLPLRLIDNKNRF--GMFARNSNAFVPINTCGVQHTKINDIFTTMTS 179 Query: 179 CLGSLQAMRHLG----------HVELVQATSGTLMILRHTA---PLSSADREKLERFSHS 225 + + V + + + + + L + E ++ Sbjct: 180 LMDRYHIDAYDPVLQTGIISHAIVRITENLNEVQVTFILSKAFDGLDNLVHELVKLHPEI 239 Query: 226 EGLDLYLAPD------SEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARA 278 + + PD +E + + G EM G + SP F Q+N K Sbjct: 240 MSIYKVINPDVRQSYFTEDIHLIYGKEMIEEQLGGHTFSLSPDAFFQLNTSQADKFYNEM 299 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 ++P + V+D + G+ + + A + +E V+ + + N + NVT Sbjct: 300 KRLAQIKPTEIVVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTV 359 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARD 397 N E+ + D +L DP R+G V+Q I+K +P R+VY SCNP+TLA+D Sbjct: 360 IENNFEDALDNL--KDIKIDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAKD 417 Query: 398 SEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 LL+ Y + + +DMFP+T +ES+ L Sbjct: 418 LSLLLED-YDLKHITPIDMFPYTSLVESITLLE 449 >UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDT6_THET1 Length = 405 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 111/432 (25%), Positives = 190/432 (43%), Gaps = 54/432 (12%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 T+ Q + + ++D+ G+ + RH G +F+P +P E + K+YA A+++ Sbjct: 16 PATSIDQTVDLELHDMAHGGRALGRHEGMVVFVPFGIPGERVLARIYHKHKRYAEAEIID 75 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVI 120 ++ S +R P+CP+FGVCGGC QH D Q K + L+ + + Sbjct: 76 IITPSQDRVIPKCPYFGVCGGCHYQHIRYDRQLEIKRHIVESLLSRIGGFRDIKVLPTIP 135 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + + YR AR +GF S+ + V CPI+ ++ +L ++ Sbjct: 136 SPREYYYRNSARFLCGQQGD-----LGFTDWRSNSFIKVDTCPIMDEKINEVLQHIQ--- 187 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 GH G + +R++ L + P + Sbjct: 188 ---------GH-----GLPGENVRVRYSRQKDE----------------LVIWPKLSVDL 217 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 + G S F QVN + ++ AL+ L+ V+D +CG+G F Sbjct: 218 ETGQQFHTQVLLGREFRVSATSFFQVNTLQAENLIRIALDELEPLEGKTVVDAYCGVGTF 277 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 T +A +A +G+E P+ + N + GL+ E+++ + P N D++ Sbjct: 278 TRFIAERAELTIGIEESPSATADFRYN--MQGLK-AKLIEGRAEKELGRLP---NNIDRL 331 Query: 361 LLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMFP 418 LLDP R G ++ I++L P +IVYVSC+PATLARD + L G Y + ++ +DMFP Sbjct: 332 LLDPPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKKVQPVDMFP 391 Query: 419 HTGHLESMVLFS 430 T H+E++ Sbjct: 392 QTFHIETIASLE 403 >UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6H3_COPPD Length = 438 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 126/438 (28%), Positives = 199/438 (45%), Gaps = 27/438 (6%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLL-PQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + + DL G GVA+ +G F+ G++ P + + +T + Y A+ V + SP R Sbjct: 4 LEITDLTVEGFGVAKSSGLVYFVKGVVAPGDVVKAVITSQHRNYVEAEFVELVQPSPYRI 63 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEV-IADVPWGYRRRAR 132 P CPHF CGGCQ QH S Q + KS L +L + V V I Y RA+ Sbjct: 64 EPLCPHFSQCGGCQLQHISYQEQLQWKSNFASQNLWKLAREKVDNVHIVPSDLLYGYRAK 123 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH---- 188 + + L +G+ S + CPIL L V + L + Sbjct: 124 AHFTFGEENNILNIGYFSK-SDKWFALTTCPILKETLWVTAQDVLSVLRKHDLKSYFTSN 182 Query: 189 --LGHVELVQAT-SGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSG- 244 L H+++ + +G +L E + L L ++ +TV G Sbjct: 183 GTLRHLQVRVSLLTGEKQVLVTFTQFPKNFENVAEEILSAGISSLALHQNTAQNKTVIGK 242 Query: 245 --------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + G +P F Q+N +K+ + AL++L+ QPED V + + G Sbjct: 243 GATLYNGNQYVQEQLMGKVYNITPVSFFQINPVQAEKLFSIALDYLEPQPEDIVFEGYSG 302 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +G FTL A + +V+ EGV V++ +NA LN + NV F + +EE + Sbjct: 303 VGAFTLLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGSL---QQK 359 Query: 357 FDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 +KV++DP R G + + +L+P RIVY+SC+P+TLARD GY++ + +D Sbjct: 360 INKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGYSLNHIQAID 419 Query: 416 MFPHTGHLESMVLFSRVK 433 MFP T H+E + L + K Sbjct: 420 MFPQTTHVECVALLIKEK 437 >UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M703_9BACT Length = 454 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 128/453 (28%), Positives = 194/453 (42%), Gaps = 44/453 (9%) Query: 17 ITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 + + + ++S GQG++ +G+ +F G LP E +T +KK YA A++ P+ Sbjct: 1 MKLEIEGVNSLGQGLSHLPDGRVVFCTGALPGETVVARLTMEKKAYAVAEIETVAVPHPQ 60 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP----WGY 127 R P C + CGGCQ QHAS LQ K +L RL D+ E I+ +P WGY Sbjct: 61 RVKPSCRWYETCGGCQLQHASRSLQLELKSLIVEDSLRRLGGFDLPEKISCLPSPVQWGY 120 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS----- 182 R +A + + GF K G+ DIV ++ CP++ Q L +R + Sbjct: 121 RNKASFPVRRTASGET--TGFFKMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSA 178 Query: 183 LQAMRHLGHVELVQAT-----SGTLMILRHTAP--------LSSADREKLERFSHSEGLD 229 G + + SG L +L T+ L R R GL Sbjct: 179 YDEKTGRGWLRHIVVRASTYGSGLLALLVVTSKPDQEGMASLRDLWRYLQSRQPALSGLA 238 Query: 230 LYLAP-------DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL 282 L + P E + + RL + F QVN ++ A + Sbjct: 239 LSINPSRGNRIIGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTAQAARLFDYASSLV 298 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 L+L+CG+G+ T LA ++ +V E P VE ++N N L NV Sbjct: 299 PDGSRT--LELYCGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVELRLSP 356 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E+ + + D +++DP R G ++ ++ IVYVSCNPATLARD+ L Sbjct: 357 AEK-LPSDLFEGQ--DCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARDAARL 413 Query: 402 LKAGYTIA--RLAMLDMFPHTGHLESMVLFSRV 432 AGY + + DMFP T H+E++ L R Sbjct: 414 QSAGYQLVTSSVRAFDMFPQTSHVETVALLCRK 446 >UniRef50_B6BUM1 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Betaproteobacteria RepID=B6BUM1_9PROT Length = 437 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 150/429 (34%), Positives = 223/429 (51%), Gaps = 17/429 (3%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + D+D G+GVA+ KT FI L E E + + KK + SP R Sbjct: 6 LHIVDIDHEGRGVAKKEEKTFFIHNALIDEKVEYKILKKKKNIFFGIATHIENPSPVRAD 65 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPW-------GYRRRA 131 P CPH+ VCGGC QH Q K+ A + +KH V YR +A Sbjct: 66 PSCPHYNVCGGCSMQHFKHSSQIEFKNNAFFQTLKHVGKVVPESQIEPIFLEFSEYRHKA 125 Query: 132 RLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGH 191 RL Y+ K ++ +GF + + + D+ C +L ++ + L ++++ + +L + Sbjct: 126 RLRAKYVDKKDKVLVGFNERLTHFLTDMDSCEVLPGRISSCLGEIKSLIKNLSIYNRMPQ 185 Query: 192 VELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS-EILETVSGEM---- 246 +E + I R PLS D +KL FS++ ++++ E ++ + E Sbjct: 186 IEYASNGDRDIFIFRILDPLSIEDIKKLSEFSNARNIEIWTQSKGPETVKPLFPERDSEI 245 Query: 247 --PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 L L F+P FIQ+N +NQ M+ +ALE L++ P+D V+D F G+GNFTLP+ Sbjct: 246 ISYPIAKYELNLEFNPSGFIQINPYINQLMIDKALELLNLNPQDEVVDFFSGLGNFTLPI 305 Query: 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 A A SV+G+EG LV GQ+NA LN L NV+F + NL E + +K LLDP Sbjct: 306 AKYAHSVIGIEGSEDLVNLGQKNAGLNNLNNVSFQYSNLFEVDVDFVNSLKNKNKWLLDP 365 Query: 365 ARAGAAGVMQQIIK--LEPIRIVYVSCNPATLARDSEALL-KAGYTIARLAMLDMFPHTG 421 R GA +++ I K + P IVYVSCNPATLARD+ L+ GY +L+MFPHT Sbjct: 366 PRDGAMQLLELISKDTMLPETIVYVSCNPATLARDANILVNDKGYKYQSAGILNMFPHTS 425 Query: 422 HLESMVLFS 430 H+ES+ LF+ Sbjct: 426 HIESISLFT 434 >UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Idiomarina loihiensis RepID=Q5R111_IDILO Length = 450 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 152/455 (33%), Positives = 224/455 (49%), Gaps = 31/455 (6%) Query: 1 MAQFYSA-KRRTTTRQIITVSVNDLDSFGQGVAR--HNGK-TLFIPGLLPQENAEVTVTE 56 MAQF+ KR + + + V+ LD + V R G+ T FI G LP E E Sbjct: 1 MAQFFKPQKRNKSVSKTLKGQVSALDHQARAVVRAAVKGQSTRFIMGALPGEVIEYKTAG 60 Query: 57 DKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD- 115 + R L S +R C ++ CGGC QH Q K + L + Sbjct: 61 KHS----GHLERILEPSSDRREVPCEYYASCGGCDFQHIDEQKQLAHKRQVVEELFQKFG 116 Query: 116 ----------VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPIL 165 E + P YRRR RL+ +L K Q+L +GFR+A S IV ++ C + Sbjct: 117 VFNPQTSSLPWQEPLVSEPMRYRRRVRLATRWLGKEQKLLIGFREAQSHHIVPIEDCLVA 176 Query: 166 APQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHS 225 L + + L + LGH+E + T+ +++LR T L + L+ + Sbjct: 177 DEILLHCVNTLYPLLNTSTVASKLGHIEAI-NTNTPVILLRITEALPGDAMQALQEWQTV 235 Query: 226 EGLDLYLAPDSEILETVSGEMPW-YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 +++L ++++ MP+ +G +L F P DF+QVN G+NQ+MV +A++WL Sbjct: 236 NKTNIWLQSENDLQPLAGAAMPFDTSIDGDKLYFQPGDFLQVNGGINQRMVQQAMDWLKP 295 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 + RV D F G+GNF+LPLA +A SV+ VEGV + E+ + NA NG+ N++ +L Sbjct: 296 EKTQRVYDFFAGIGNFSLPLARRAQSVLAVEGVYRMAEQTRINAESNGMDNLSSLSADLN 355 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPI----RIVYVSCNPATLARDSEA 400 E D LDPAR GA GV++ + KL+P RI+YVSC P TLARD Sbjct: 356 EITAS--DLGKPADLWCLDPARPGAEGVVKLLHKLKPEHRPQRILYVSCAPDTLARDIAG 413 Query: 401 LL----KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +L Y I L+ +DMFP T H+E+MV R Sbjct: 414 MLTESKGCNYRIIGLSTVDMFPQTHHIETMVCLER 448 >UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSE5_SYNAS Length = 429 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 115/435 (26%), Positives = 192/435 (44%), Gaps = 38/435 (8%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 + Q + +++ + G G+ R G +F+P + + E+ +TE ++ YA+ ++ R Sbjct: 21 KLPRIGQKVEITIESVAFGGSGIGRFAGLVIFVPFTVDGDRVEIEITEVRQSYAKGRMCR 80 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHDVSEV----I 120 L SP R P C + CGGCQ QH + Q K + R+ KH V Sbjct: 81 ILKPSPFRTVPECSLYERCGGCQYQHIAYTHQLEIKKNQVIDAFERIGKHPAPPVRDVIA 140 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + +P+ YR +A +++ + +G+++A S IV V +C I+ + L +R L Sbjct: 141 SPMPYAYRGKAEFHISF-KSGRLPVIGYKEAADSRIVPVSRCAIVDESVNRSLTALRGKL 199 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 ++ A G +IL S + ++ L + P E + Sbjct: 200 NAISAAGRRG------GKKEERVILW-----SDTGKAAVDPGVSGGRGGLVMRPVKEKM- 247 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 L + F Q N+ + MV + + ++ VLD +CG G F Sbjct: 248 ---------------LRAPFQGFFQANSALVGSMVDSVIRACALTGKETVLDAYCGSGLF 292 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-QPWAKNGFDK 359 +L LA+ A + GV+ V +N G+ N F+ ++ E + + D Sbjct: 293 SLFLASSARQLFGVDADGEAVHCAAENLSKEGISNAEFFAGDVGEILRHTFLKTQQSVDI 352 Query: 360 VLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 V+LDP R G + V++ + L P RI+Y+SCNPAT ARD L +GY + L +DMFP Sbjct: 353 VVLDPPRIGCSSDVLEALKSLGPARIIYISCNPATQARDVRRLRDSGYILRDLQPIDMFP 412 Query: 419 HTGHLESMVLFSRVK 433 T H+E + L R Sbjct: 413 QTKHIEIVGLLEREN 427 >UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI35_9BACT Length = 456 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 111/449 (24%), Positives = 198/449 (44%), Gaps = 35/449 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 + I + + + G G+A GK +F+P + ++ +T +KK YA KV + +S S Sbjct: 2 KHIPNLEIKKMAMGGFGIAYAEGKAIFVPYTAVGDVVDIDITIEKKDYAYGKVTKYISYS 61 Query: 74 PERETPRCPHFG---VCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI----ADVPW- 125 R +CP F CGGC Q + K+ L L + + + A P Sbjct: 62 DSRVEVQCPSFAAEIPCGGCDWLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQI 121 Query: 126 -GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC----- 179 YR + + + +T ++ G S IV+ C P + L + Sbjct: 122 KHYRNKVFMPVGKNYQTGKITYGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAK 181 Query: 180 LGSLQAMRHLGHVEL---VQATSGTLMILRHTA-----PLSSADREKLE-RFSHSEGLDL 230 + + H G + + G +++ P ++ +KL F +G+ Sbjct: 182 VEPYNEIEHKGQLRHIGFRCNSDGRQILVILVTLSGKLPFTNLLVKKLTTEFPQIKGIIQ 241 Query: 231 YLAPDSEI------LETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + E + + G YD GL+ + R F Q+N G + +++ ++++ Sbjct: 242 NINRQKENVILGKETKLLYGSENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQDFVN 301 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 +LD +CG+G L LA + V+ +E P +E ++NA LNGL+NV+F + Sbjct: 302 SNN--VILDAYCGIGAIGLSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKV 359 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 E++++ K D +++DP R+G ++ II+ E +I+Y+SC P TLARD L+ Sbjct: 360 EDNLSAVLI-KEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLI 418 Query: 403 KA-GYTIARLAMLDMFPHTGHLESMVLFS 430 Y + L DMFP+T H+E + + Sbjct: 419 AGEKYKVVFLQPFDMFPNTWHIECLAVLK 447 >UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC40A Length = 486 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 154/449 (34%), Positives = 243/449 (54%), Gaps = 20/449 (4%) Query: 3 QFYSAKRRTTTRQ---IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59 +F +K T + TV++ DLD G GV R +F+ G L E ++ V KK Sbjct: 39 RFGKSKNAADTSESQNPNTVTIEDLDWMGNGVVR-GNPMVFVEGALVGETCDIEVVSSKK 97 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD---- 115 + A+ S S R+ P CP F CGGCQ QH D + AL +M+ Sbjct: 98 KVINARATNIHSPSDARQAPFCPVFDACGGCQLQHIKPDAALEQRDRALKVMMERQLSMK 157 Query: 116 ---VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEAL 172 +A YRR+ARL+++ Q+++GFR+A SS++++ + CPIL L L Sbjct: 158 PHVWQAPLAGPRPQYRRKARLAIDARNPN-QIKLGFREANSSNVINAETCPILVDPLSKL 216 Query: 173 LPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE------ 226 + +R L ++ RH+GH+ L+ + + ++++HT L + + + ++ Sbjct: 217 IGPLRDALTGFESARHIGHISLIAGDNTSHLVIKHTKALEAELIDAVSELVNTSSSVGVC 276 Query: 227 GLDLYLAPDSEILETVSG--EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 G++L L + +V +M N ++ S DFIQ+N VN+KMV +A+ WL+ Sbjct: 277 GIELKLENKQAQIRSVGRGTDMVMNTVNSCSISPSANDFIQINKVVNEKMVNQAIGWLNP 336 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 +P +RV D F G+GNFTLP+A A V VEGV +V + + NA+ G++NV + H +L Sbjct: 337 EPNERVADWFSGLGNFTLPIAKLGAKVQAVEGVAEMVRRAKDNAQQQGIENVEWLHLDLA 396 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 + + + GFDKVLLDP+R GA V ++K P IVYVSCNP+T +RD++ L+ Sbjct: 397 DKTNVEASLQLGFDKVLLDPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLIDG 456 Query: 405 GYTIARLAMLDMFPHTGHLESMVLFSRVK 433 GY + + + +MFP T H+E M LF+R + Sbjct: 457 GYEMEKAGVAEMFPFTHHMEMMALFTRKQ 485 >UniRef50_C8NCJ6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCJ6_9GAMM Length = 430 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 155/433 (35%), Positives = 224/433 (51%), Gaps = 19/433 (4%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + +T++++ D +GVARH+GKT+F+ G LP E +T DKK++ V+ L SP Sbjct: 2 KTLTLTIDGFDYNARGVARHDGKTVFVSGALPGERVVARITADKKRFLETDAVQILEPSP 61 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKH---DVSEVIADVPWGY 127 R TP C ++ CGGC QHA Q R K LAR+ K V I+ PW Y Sbjct: 62 ARITPACAYYDDCGGCALQHADDAAQHRLKETVWLEQLARIGKIAPETVLPAISGEPWHY 121 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R RARL+ Q +GFR SS +V++++C L + A LP +RA L Sbjct: 122 RSRARLAW----DDAQQALGFRGRASSRVVNLERCLTLPAAISARLPDIRALCARLAQQT 177 Query: 188 HLGHVELVQATSGTLMILRHTAPL-SSADREKLERF--SHSEGLDLYLAPDSEILETVSG 244 L V++ + S T++ +R + E + R+ S ++ ++L E + + Sbjct: 178 TLHGVDISEGDSVTVLRIRLQKAVGDRLAAETVARWNESAAQPWQIWLQNGRETRKHPAD 237 Query: 245 EM---PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 + L + ++P DF QVN +N+++V +AL L V P RVLD FCG+GNFT Sbjct: 238 APALAYTLPAYDLTMPYAPDDFTQVNKALNRELVTQALAALQVPPGARVLDFFCGLGNFT 297 Query: 302 LPLATQAASVVGVEGVPALVEKG-QQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 LPLA A V+G+EGV +V + A F +L KQ A ++ Sbjct: 298 LPLARSGADVLGLEGVEEMVVRATANAAAHGLAARCQFRRADLFTVTAKQLKAWGKAERW 357 Query: 361 LLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 LLDP RAGA + + + K P RIVYVSCNP TLARD+ L + GY +A +L MF Sbjct: 358 LLDPPRAGAQALCEALDGKHAPARIVYVSCNPGTLARDAGILAQKGYRMASGRLLHMFAQ 417 Query: 420 TGHLESMVLFSRV 432 T H+ES+ +F R Sbjct: 418 TAHVESLAVFVRK 430 >UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDZ7_9FIRM Length = 484 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 120/444 (27%), Positives = 213/444 (47%), Gaps = 31/444 (6%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 + +TV+ + G+G+A GK +F+ LLP E AE+ + + + +YA+ +VV+RL+DSP Sbjct: 7 RTVTVTAKKIGINGEGIAYLEGKPVFVDQLLPGETAEIVLLDSQLRYAKGQVVKRLNDSP 66 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM--------KHDVSEVIADVPWG 126 +R P+CP G C GC + Q + K + + + + G Sbjct: 67 QRVKPQCPVQGRCSGCPLMILKPEAQLQVKRELVQEALIKYAGLSRDKVQPVIASPSGLG 126 Query: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC-----LG 181 YR + +L + + +L G + GS+ ++ + C I P LEAL ++ A L Sbjct: 127 YRNQCKLPIR--EERGRLVNGLFEEGSNRVMPIAHCLIHDPDLEALRKQILALANQFRLK 184 Query: 182 SLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDL---YLAPDSEI 238 + + G LV + S + +E+ EG+ + PD Sbjct: 185 AYDPKKGTGLRTLVLRGFEGQYQCVLVSGEDSLPKGFIEKLKAIEGMTCIMQNINPDKRT 244 Query: 239 LETV--------SGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRV 290 + + +RL+ S F Q+N +M+ A ++ P D + Sbjct: 245 RQLFSNRWSLLAGEDRLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIE--PCDTL 302 Query: 291 LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 ++ + G+G +L L +A +++G+E VP VE ++NARLN +NV F + +++ K Sbjct: 303 VEAYSGVGGISLMLKEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMKKI 362 Query: 351 PWAKNGFDKVLLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 + D V++DP R G G ++ + + +P +IVY+SCNPATL ++ + L Y + Sbjct: 363 I-RRTKIDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDL-YEVK 420 Query: 410 RLAMLDMFPHTGHLESMVLFSRVK 433 + DMFP+T H+E++VL S++K Sbjct: 421 TVIPFDMFPNTPHVETVVLLSKLK 444 >UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n=14 Tax=Cyanobacteria RepID=Y1228_SYNPX Length = 465 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 128/454 (28%), Positives = 209/454 (46%), Gaps = 36/454 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + + DLD G G+AR G + +PGLLP E A+V + + +K +++ RL Sbjct: 14 PRPGLRLELQAIDLDRDGHGLARWQGWVVVVPGLLPGERAKVQLQQRQKSRWLSRISERL 73 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP------ 124 SP R P C CGGC QH Q+ K L + M P Sbjct: 74 DSSPTRRRPPCILAQDCGGCTLQHLEESAQRNWKQNQLHQTMLRLGGIDHPQAPALTDQR 133 Query: 125 -WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG-- 181 GYR R + L + +L+MG+ + GS IV++ +CP+L P+L+AL+ ++ L Sbjct: 134 GLGYRNRGLIPLR-RGEDDRLRMGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTS 192 Query: 182 ------SLQAMRHLGHVELVQA-TSGTLMILRHTAP----LSSADREKLERFSHSEGLDL 230 L + L H+ L +G ++I ++ L ++ +ER+ +G+ L Sbjct: 193 GLSADHDLSHSQGLRHLGLRIGHHTGEVLITVVSSQQLPALQRLAQQWIERWDPVKGVTL 252 Query: 231 YLAPDSE------ILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 L P ++G + GL+L S F Q+N +++VA + WL Sbjct: 253 NLQPRRTNQILGATTTVLAGAPTIRELFCGLQLQLSTTTFFQINTPQAERIVACIVSWLS 312 Query: 284 VQPED-RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHE 341 ++D +CG+G +LPLA Q VVG+E P +++ + NA NGL F Sbjct: 313 QAELAGPIVDAYCGIGTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQAG 372 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 ++ + + +++DP R G V++ I+ P + Y+SC+ AT ARD + Sbjct: 373 DVANLLKETLA---TCSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKR 429 Query: 401 LL--KAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 LL + Y + +L +D FP T HLE++ RV Sbjct: 430 LLQPEGPYRLEQLQPVDFFPQTTHLENLAFLRRV 463 >UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Entamoeba RepID=B0ESQ3_ENTDI Length = 479 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 180/455 (39%), Gaps = 34/455 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + V+ ++ G+G+ G+ + + ++P + + + +K V + Sbjct: 24 LRKKTRYEGIVDSVEFGGKGIVNFQGRRIILDNVIPGQKVSFCICKIRKGKCPGGNVEVI 83 Query: 71 SDSPER-ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV------IADV 123 SP C H CGGC Q Q K + ++ ++ E + + Sbjct: 84 EKSPFEDIEDICKHNKECGGCLYQSMGYQQQLEMKKKQVLNMINKEIKEYQFDGIKASPI 143 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKA-GSSDIVDVKQCPILAPQLEALLPKVRAC--- 179 GYR R + L+ G K +D+V C I+ LL R Sbjct: 144 NIGYRNRMDYTFGDGYIGGPLECGLHKMYHFNDVVTTFDCRIVDKDFNKLLLFTRDYFRI 203 Query: 180 --LGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSAD----REKLERFSHSEGL- 228 + ++H G++ + + +M T+ + D + KL L Sbjct: 204 KNIPHYNKIKHTGYLRNLLIRKAKKTNEIMYCLITSSQLTIDLNELKNKLLELPLMGNLV 263 Query: 229 --------DLYLAPDSEILETVSG-EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 279 D+ +E + G + + GL +P F Q N+ + + Sbjct: 264 SIIHCIFDDITDIVGYNKMEILYGNDYITEELLGLHFKITPMSFFQTNSLGAEVLYQTVR 323 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 E++ D + DL+CG G T L+ ++GVE P + + NA LN L N F Sbjct: 324 EYITTTKCDIIFDLYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNCEFR 383 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDS 398 ++ ++ + +N + ++LDP R G + +IIK I+YVSC P TL RD Sbjct: 384 TADVNNELDQL--QENRPELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLVRDL 441 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 L + GY + + ++DMFP+T H+E++ L ++ Sbjct: 442 IILEQNGYKVKNITLVDMFPNTPHIETVCLLKKIN 476 >UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Coriobacteriaceae RepID=C8WGH7_EGGLE Length = 461 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 125/467 (26%), Positives = 201/467 (43%), Gaps = 41/467 (8%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKK 59 M + KR T+++ + + V R GK +F+ G P + A + + EDK Sbjct: 1 MDETEKQKRDLGVFMEETITIERMGYGSEAVGRLESGKAVFVEGGAPGDVAALEIVEDKP 60 Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV--- 116 +ARA++ R + S R PRC CGGC QH S D Q +K A +A ++ Sbjct: 61 TFARARIARLVKPSELRVRPRCEAGAACGGCPWQHLSYDAQLEAKRANVAAALERTAKFG 120 Query: 117 ---------SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAP 167 + + WGYR + L + Q+GF + G+ DI CP+ Sbjct: 121 RERAEELVRPCLPSKRQWGYRNKLELGAAMDER-GTFQLGFHREGAHDIASPGACPLAHD 179 Query: 168 QLEALLPKVRACLGSLQAMRHLGHVEL---VQATSGTLMILRHTAPLSSADREKLERFSH 224 + +R L Q LG + +G L + T+P S + Sbjct: 180 AIAKAPKALRGALRFAQGSADLGIFRVGVRHSLHTGDLEVALWTSPGSFPRGHIAKTVKS 239 Query: 225 SE----GLDLYLAPDS----EILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMV 275 + + + P + +ET+ G+ W + G R S F QVN +K++ Sbjct: 240 AVKATSIVRVMADPGKARKIKGVETLDGKGCWEEQLGDARYLASAPSFFQVNTAQAEKLI 299 Query: 276 ARALEWLDVQPEDR---------VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 A +E L + + + DL+ G G F++PLA A V+ VE + V ++ Sbjct: 300 ACVIEGLGGRMGEDGPEGLDDLLIADLYAGGGTFSVPLAQAGAEVLAVEAAGSSVRDLRR 359 Query: 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIV 385 NA +N + + + ++ + G D +++DP RAG GV++ I P R+ Sbjct: 360 NADMNRVD-LEVIGGDAARELPEL----GGLDALVVDPPRAGLADGVVESIAAAAPERVA 414 Query: 386 YVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 YVSCNPAT ARD GY + + +DMFP T H+E + +F R+ Sbjct: 415 YVSCNPATWARDVARFESQGYRLTSVQPVDMFPQTYHVEVVSVFERL 461 >UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfotalea psychrophila RepID=Q6ANA2_DESPS Length = 444 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 130/442 (29%), Positives = 219/442 (49%), Gaps = 35/442 (7%) Query: 19 VSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 +++ + + G G+ + + GK + IPG LP E + T+ +DKK YA K+ + ++ R Sbjct: 4 LTIEKVINGGYGLTKTDEGKIVLIPGTLPGEEIQTTIHQDKKGYATGKIKKIVTAHDGRI 63 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI------------ADVPW 125 TP CP+ CGGC QHA+ +LQ K A + + + + + Sbjct: 64 TPPCPYIRNCGGCNLQHATAELQLEIKEAIVKESLTRSGKPELAKASALIQAPIASPQDF 123 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 YR+R RL + + +MGFR+ S DI+ +K+C + +PQ+ +L + + Sbjct: 124 FYRQRIRLHI-----DEYGRMGFRQHQSHDIIAIKKCLLASPQINEVLTALEEHEEHGEI 178 Query: 186 MRHLGHVELVQA--TSGTLMILRHTAPLSSADREKLERFSH--SEGLDLYLAPDSEILET 241 + +EL+ T ++ AD + +R + +Y ++ L++ Sbjct: 179 CQLASQLELILNPATEQVQLVYLLKRKSRPADTNRAKRLGEKIASVDCIYFIGENFPLQS 238 Query: 242 VSGEMPWYDS-------------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 + P + + + F QVN N +M+ L + D++ E+ Sbjct: 239 AYCKTPEEGKVLSLDYKPQALAGKKISMQWEVNGFCQVNIKQNVQMIETVLAFADIRDEE 298 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 VLDLFCGMGNF++PLA QA +V G EG + + ++NA NGL N +FY + + + Sbjct: 299 SVLDLFCGMGNFSIPLACQAKAVTGFEGQGSAIRSAKKNALNNGLDNCSFYQKPVHKACA 358 Query: 349 KQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 + K +D V++DP R GA + Q+ KL R++Y+SC+PATL RD L K G+ I Sbjct: 359 ELIADKRVYDCVIIDPPRQGAPELAGQLAKLCQKRLIYISCDPATLTRDLAELSKQGFQI 418 Query: 409 ARLAMLDMFPHTGHLESMVLFS 430 ++ +DMFP T H+E++VL Sbjct: 419 KKIQPIDMFPQTYHIENVVLLE 440 >UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RXM8_ALTMD Length = 482 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 154/443 (34%), Positives = 241/443 (54%), Gaps = 18/443 (4%) Query: 3 QFYSAKRRTTTRQIIT-----VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTED 57 +F +K+ +++ +LD GQGVAR F+ G LP E ++ V Sbjct: 39 RFKKSKQSKEHNTAQDANNNAITIQELDWMGQGVAR-GATMYFVEGALPGETCDIEVVSS 97 Query: 58 KKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS 117 KK+ AK + S R+ P CP F CGGCQ QH D + AL +M+ +S Sbjct: 98 KKKVVSAKTISIQGPSELRQPPFCPVFEACGGCQLQHIDADAALAYRDNALKIMMERQLS 157 Query: 118 --------EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQL 169 ++ P YRR+ARL+++ +++GFR+A S+ +V++ CPIL L Sbjct: 158 IGSGVWQAPLVGPRP-QYRRKARLAIDARNPDN-IKLGFREANSNKVVNLDTCPILVNPL 215 Query: 170 EALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD 229 + +R L + RH+GH+ L+ + ++++HT L A E ++ F+ + GLD Sbjct: 216 STAIGPLRNALEGYDSARHIGHISLIAGDNRAQVVIKHTKALEDALIETVDAFAKALGLD 275 Query: 230 LYLAPDSEILETVSGEM--PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + L L +V + +G ++ S DFIQ+N VN+KM+ +AL WLD +P Sbjct: 276 VVLENKQGRLRSVGEAQGLIMHTVDGCSISPSANDFIQINKVVNEKMINQALVWLDPRPN 335 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 +R+ D F G+GNFTLP+A + A V +EGV +V + + NA+ G++NV + H +L Sbjct: 336 ERIADWFSGLGNFTLPIAKKGALVQAIEGVAEMVLRAKDNAQQQGIENVEWLHLDLANKA 395 Query: 348 TKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYT 407 + + GFDKVLLDP+R GA V ++K P IVYVSCNP+T +RD++ L+ GY Sbjct: 396 NVEASLQQGFDKVLLDPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLINGGYE 455 Query: 408 IARLAMLDMFPHTGHLESMVLFS 430 + + + +MFP T H+E M LF+ Sbjct: 456 MEKAGVAEMFPFTHHMEMMALFT 478 >UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWS7_9BACL Length = 451 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 103/454 (22%), Positives = 190/454 (41%), Gaps = 33/454 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 K + R + +++ + G+G+ + K F+ G LP E + E+ +Y K+V Sbjct: 2 KNKNGKRLNVLLTIKKIGINGEGIGYYKKKITFVKGALPDEVIVCEIVEETPKYIIGKLV 61 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM----------KHDVS 117 + SP R + + G H S + Q K L K + Sbjct: 62 KVKEPSPHRVEIK-REYAESGAYGLAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLK 120 Query: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 + + V GYR + + L + ++ G K GS+D+V++ + L + + Sbjct: 121 TLASPVTEGYRNKNQFPLAV--RNGRVIAGLYKEGSNDLVEINEDLALHENGNKITNLAK 178 Query: 178 ACLGSLQAM----RHLGHVELVQATSG------TLMILRHTAPLSSADREKLERFSHSEG 227 LG + + V+ + + + + +T + + D+ E Sbjct: 179 KLLGKYKVEISTNKKNYGVKYIATRTSFYNGDVQVTFVANTDKIKNMDKVVNELKRERIV 238 Query: 228 LDLYLAPDSEILETVSG---------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARA 278 + L ++ V G + + S + F Q+N +K+ + Sbjct: 239 KSIILNITNDKDHLVMGTESVTLYGSDYIVEKIGDTKYELSAKSFFQLNPPATKKLYDKV 298 Query: 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTF 338 +E+ ++ D VLD +CG+G ++ V GV+ +PA +E N +LN L+N T+ Sbjct: 299 VEFAALKETDVVLDAYCGVGTIGQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTY 358 Query: 339 YHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDS 398 + + V + FD ++DP R G + + ++ +E +IVYVSCNP+TLARD Sbjct: 359 VAGDANKIVPRWKKKGINFDVAIVDPPRVGLGPLAKNLLAVEAKKIVYVSCNPSTLARDL 418 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + L + Y I R+ +DMFP T +E++V R Sbjct: 419 KVLTRK-YKIRRIQPVDMFPGTAAVEAVVELIRK 451 >UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AW25_HERA2 Length = 423 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 127/427 (29%), Positives = 202/427 (47%), Gaps = 24/427 (5%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS-DSP 74 + +++ L G GV R+ G+ +F+ LP E V +TE + +AR ++ S + Sbjct: 9 ELDTTIDGLAQGGDGVGRYAGRPVFVAAALPGEQVRVRLTERRNGWARGVLLEPPSNPAA 68 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGY 127 ER TP CP + CGGC Q+ ++ Q+++K LA ++ +V+ A PW Y Sbjct: 69 ERVTPACPVYQRCGGCDWQYQMIESQRQAKQTILAEQLRFVAQTDHAEVAATAAGEPWHY 128 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R AR+ ++ ++GF AG IV+ QC I+ P+L A + +++ L + Sbjct: 129 RSVARVHVDGQ------RVGFYAAGGRQIVEFDQCLIIDPRLNATIERLKPLLP----LI 178 Query: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERF--SHSEGLDLYLAPDSEILETVSGE 245 L + L +T+ + SA R R+ + + + A + E Sbjct: 179 GLREISLRLSTTDGTIHGHLIGQGQSAWRSWARRWMSADATIAGVSSATREGWMALAGAE 238 Query: 246 MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 + +RL +P F Q N + ++ + +L + R+LD FCG+G F LPLA Sbjct: 239 YLYEQLGDVRLRIAPTSFFQANVERARAVLQQIECFLPLNNTTRLLDGFCGVGTFLLPLA 298 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 G+E PA + Q +A+ N L NVT +E + + K FD ++DP Sbjct: 299 HNIGHGWGIEEHPAAIRDAQASAKANQLSNVTLKTGKVEAILPQL---KQQFDLAIVDPP 355 Query: 366 RAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R G + +I +P I YVSC+P TLARD + L GYTI D FP T H+E Sbjct: 356 RRGVEPAALNALIAAQPTMIAYVSCHPGTLARDIKLLQAGGYTIQHAQPHDFFPQTSHVE 415 Query: 425 SMVLFSR 431 S+VL S+ Sbjct: 416 SLVLLSK 422 >UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=27 Tax=Lactobacillus RepID=Y1606_LACJO Length = 459 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 99/465 (21%), Positives = 194/465 (41%), Gaps = 39/465 (8%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M +F K+ I +++ L G+G+ + K +FIPG LP E + + Sbjct: 1 MTKFTKNKQEKN----IIITIKRLGINGEGIGYYKKKIIFIPGALPNEVVVAKIVDRHPH 56 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS--- 117 Y ++VR SP+R T GG + H S Q K + ++ Sbjct: 57 YLEGELVRIKEKSPDRVTFPKGVDPAVGGLELAHLSYPKQLEFKQHLILESLRKYHPRDY 116 Query: 118 -------EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLE 170 + W YR +A+ + + + ++G S ++D+ P + + Sbjct: 117 IKYKVKKTIPTPNAWNYRNKAQYQIEFN--KGKSKLGLYAPNSRRLIDLPDMPTQTKETQ 174 Query: 171 ALLPKVRACLGSLQAM-----RHLGHVELVQAT----SGTLMILRHTAPLSSADREKLE- 220 + +++ + L RH ++ + +G + + T D + L Sbjct: 175 KVEREIKKLIDKLHIRIADFRRHTDGIKTIAVRQSNATGEIQVTLITIGKKIKDLKLLAS 234 Query: 221 ---RFSHSEGL----DLYLAP---DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGV 270 + + + + P ++ ++ + G + SPR F Q+N Sbjct: 235 HIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFGKSHITEEILGKKFKLSPRAFFQLNPEQ 294 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 + + AL++LD+ P+ ++D + G+G + + Q V+G+E +P V Q+N RL Sbjct: 295 TTTLYSEALKYLDLTPDQTLIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRL 354 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSC 389 N ++N + N+E+ + + + +++DP R G + +++ +++++P VYVSC Sbjct: 355 NHVRNAEYIQGNVEKLLPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSC 414 Query: 390 NPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS-RVK 433 NPATLA+D L A Y + + +DM P T E + R Sbjct: 415 NPATLAKDLVLLSDA-YDVRVIQPVDMMPQTPRWEGVTKLVLRKN 458 >UniRef50_A3WPS3 SAM-dependent methyltransferase n=1 Tax=Idiomarina baltica OS145 RepID=A3WPS3_9GAMM Length = 446 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 173/453 (38%), Positives = 249/453 (54%), Gaps = 29/453 (6%) Query: 1 MAQFYSAK--RRTTTRQIITVSVNDLDSFGQGVARH----NGKTLFIPGLLPQENAEVTV 54 MAQF+ K +++T+ ++T + + LD G+GV R + F+P +LP E A+ V Sbjct: 1 MAQFFKPKGRKKSTSNYVLTGTADALDHQGRGVVRLSKQGKNRVYFVPQVLPGETAQFKV 60 Query: 55 TEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-- 112 T + +++ R + S ER CP++ CGGC QH + Q+R K + L Sbjct: 61 TGQQNT----ELLARQNASEERRQAPCPYYEDCGGCDLQHINETHQRRHKQQVVTELFAK 116 Query: 113 ------KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILA 166 + E + W YRR+ARL++ + +++GFR S IVD+ QC +L Sbjct: 117 MAGVRDELPWHETLIADDWQYRRKARLAIYQRNTAEPMRLGFRAHSSKHIVDIPQCVVLD 176 Query: 167 PQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE 226 L +L +R+ L Q LGH+EL++A + LR T LSS + L FS Sbjct: 177 SALNRVLDDLRSILYEAQIGPKLGHIELIKARD-VHLCLRITQSLSSEQEKCLRAFSSDS 235 Query: 227 GLDLYLAPDSEILETVSGEMPWYDS--NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 L+L D + + +++ ++ +D +G RL F P +FIQVNA VNQ+MV +AL WL Sbjct: 236 QCTLWL-DDGQQITSLAEDVVCFDETIDGDRLVFMPGNFIQVNAKVNQQMVKQALNWLAP 294 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL- 343 Q ED +LDLF G+GNFTLPLA + SV VEGV A+ + NA L NV +L Sbjct: 295 QAEDEILDLFAGIGNFTLPLARRVKSVTAVEGVSAMTTQLAANAAAADLSNVHAQTFDLS 354 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIR----IVYVSCNPATLARDSE 399 + V++ F +VLLDPARAGA V Q I +LE + IVYVSC+P TLARDS Sbjct: 355 TDQVSRLLKKG--FQRVLLDPARAGAEKVCQGIAQLEADKQPVQIVYVSCSPDTLARDSR 412 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 LL GY I ++++DMF T H+E+MV F +V Sbjct: 413 WLLDNGYEITHISLVDMFVQTHHIETMVSFKKV 445 >UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM76_9BACT Length = 454 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 132/455 (29%), Positives = 208/455 (45%), Gaps = 43/455 (9%) Query: 14 RQIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + IT++V D++S GQGVA +GK +F+ G LP E V++ DKK Y+ AK++ Sbjct: 2 GKEITLTVRDVNSRGQGVAVGEDGKVVFLDGGLPSEVVRVSLETDKKNYSTAKILDIEVP 61 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI-------ADVPW 125 S R TPRCP +G+CGGCQ QH S DLQ K+ ++ M+ + + + W Sbjct: 62 SEHRITPRCPWYGLCGGCQLQHGSYDLQLEIKAKSVRDAMERIGRMRVDRLVCHPSPMQW 121 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC------ 179 GYR +A + + +GF ++GS + + CP+L P +E L R Sbjct: 122 GYRNKASFPVRSENGGE---IGFFRSGSHKLAPIDGCPVLMPHVEKLYVDFRDTVMPELK 178 Query: 180 ---LGSLQAMRHLGHVEL---VQATSGTLMILRHTAPLS-----SADREKLERFSHS--E 226 + RH G + G+L+ L L L R + Sbjct: 179 RNGVPFYDERRHKGLLRHMVFRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQT 238 Query: 227 GLDLYLAPD--------SEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVAR 277 + E T+ G+ + + L++ F QVN +++ R Sbjct: 239 SFSGVWNENSSRGNRILGERSSTIWGDGVITEKISNYDLSYDGTAFFQVNPFQAERLFLR 298 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 A + + V++L+ G+G T+ LA A +V+ VE +E+ +N NGL NV Sbjct: 299 ASSIVAERGGA-VVELYAGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVK 357 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLAR 396 E+ V AK D +++DP R G + V+ + + +VYVSCNP+TLAR Sbjct: 358 GICNRAEDTVRTMVEAK--PDVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTLAR 415 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 D L+ G+ +A L D+FP T H+E++ F R Sbjct: 416 DGAKLVSDGWELATLECFDLFPQTVHVETLASFKR 450 >UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desulfuromonadales RepID=A1ARE6_PELPD Length = 493 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 197/456 (43%), Gaps = 33/456 (7%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67 + R + R + ++ LD G G++ L I G LP + + + ++ A V Sbjct: 32 RVRLSPRSTVEARISGLDDEGYGISCAENHGLRIAGGLPGDTVQAVIDHVAQRMAFGHVK 91 Query: 68 RRLSDSPER-ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHDVSEV 119 + L SP R P C C GC + Q K + R + ++ + Sbjct: 92 KILVASPLRSRRPPCRESAHCLGCPLIAMNYCDQAEWKRQFVLRQLDAYRGLDGIELHPL 151 Query: 120 IADVPW-GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKV-- 176 ++ YR RL++ K + +G + S D+VD+ CPI + ++ V Sbjct: 152 LSPRRLTNYRTTVRLTIA--GKYAEPYIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRR 209 Query: 177 ---RACLGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKL-----ERFSH 224 R + +G + + M++ TA S + L E+ Sbjct: 210 GISRLKVPVYSPRNRVGLLRYLVVRVSEAEQKAMVVFVTARRSYNEIHHLARYVREQLPE 269 Query: 225 SEGLDLYLAPD------SEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVAR 277 E + + + ++ + + G + L SPR F+QVN + R Sbjct: 270 VEVVAQNVNSSEGNVIMGPVDHFLTPKHHLTERIGEVSLMISPRSFLQVNRDGACLIYER 329 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 EW + + VLDL+CG+G L LA +A V+GVE V A VE ++NAR+NG+ N Sbjct: 330 VAEWARLTGRETVLDLYCGIGGIALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCV 389 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLAR 396 F ++ E + + G D V+L+P R G V++Q+ L P ++YVSC+P TLAR Sbjct: 390 FQAGDVAEQLEELAEDGEGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLAR 449 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 D L GY + +DMFPHT H+E++ +V Sbjct: 450 DLNLLKSLGYVCVEVQPVDMFPHTMHVENVARLEKV 485 >UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=Sulfurihydrogenibium RepID=C1DTC8_SULAA Length = 420 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 106/424 (25%), Positives = 194/424 (45%), Gaps = 20/424 (4%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 V ++ + G G+A+ + K F+P L E E+ V ++KK Y+ + + + SPER Sbjct: 5 VKIDKIVYGGYGLAK-DDKVYFVPYTLEGEEVEIEVVQEKKDYSLSNPINIIKPSPERVE 63 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSE--VIADVPWGYRRRAR 132 P C +F +CGGC QH + Q K L R+ K D+ V P+ YR + + Sbjct: 64 PVCKYFTLCGGCDFQHIPYEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQ 123 Query: 133 LSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHV 192 GF + S+ ++D+ C +L ++ ++ L V Sbjct: 124 FKF------DGKNFGFYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFLFKYALSPSQVIV 177 Query: 193 ELVQATSGTLMILRHTAPLSSADREKLERFSHS--EGLDLYLAPDSEILETVSGEMPWYD 250 + + + K+E + E + D + + + GE ++ Sbjct: 178 FSNSKNQKLIKFVFPDNSQIANIIPKIEIYKDEIDENIKGIGFYDKKKRQLLLGEYVIFE 237 Query: 251 -SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 + + S F QVN + ++ ++ + + R +D +CG+G F++PLA Sbjct: 238 TVDNYKYRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAVDFYCGVGTFSVPLANYVR 297 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 V+G+E V+ + N R N L+N+ F E+ + + V+ DP R+G Sbjct: 298 EVLGIESNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGLK--YAKDFKPEVVVFDPPRSGL 355 Query: 370 AG-VMQQIIKLE-PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 ++++I K+E +I+Y+SCNP+TLARD + + G+ +++M+DMFP T H+ES+V Sbjct: 356 NKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKVSMVDMFPQTHHIESVV 415 Query: 428 LFSR 431 + + Sbjct: 416 VLEK 419 >UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firmicutes RepID=C4Z8S6_EUBR3 Length = 470 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 114/470 (24%), Positives = 192/470 (40%), Gaps = 50/470 (10%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 T +V +D +G+A + G + + +P + E V + K Q A +++ Sbjct: 1 MKKGFRGTGTVERVDFPNKGIAVTDDGDRVIVKNTIPGQKVEFVVNKVKHQRAEGRLMEV 60 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARL-----------MKHDVSE 118 + SP CPHFG+CGGC Q + Q K + +L + Sbjct: 61 IEKSPLETEEPCPHFGMCGGCTYQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGI 120 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVR 177 + YR + S K L +G K GS D+V V C I+ +L Sbjct: 121 HGSPKKSEYRNKMEFSFGDEYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATL 180 Query: 178 AC-----LGSLQAMRHLGHVELVQAT----SGTLMILRHTAPLSS--ADREKLERFS--- 223 + H G++ + +G +++ T + + E L F Sbjct: 181 DYFSKNNIPYFHRATHKGYLRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYAL 240 Query: 224 -------------HSEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAG 269 H++ + +E E + G+ +Y+ GL+ +P F Q N+ Sbjct: 241 LTRHYDGRFKGVLHTKNDSVADVVKNEGTEVLYGDSYFYEKLLGLKFKITPFSFFQTNSL 300 Query: 270 VNQKMVARALEWLDVQPED-----RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 + + A E++ +D V DL+ G G +A VVGVE V V Sbjct: 301 GAEVLYETAREFILGDNKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAA 360 Query: 325 QQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIR 383 ++NA LNGL N F ++ + + D ++LDP R G + +II+ Sbjct: 361 KENAALNGLDNCKFIAGDV---LKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVEN 417 Query: 384 IVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 +VY+SC P +LARD + + GY + ++ +DMFP+T H+E++VL S+V Sbjct: 418 MVYISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSKVN 467 >UniRef50_Q1QX18 RNA methyltransferase, TrmA family n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX18_CHRSD Length = 475 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 165/462 (35%), Positives = 235/462 (50%), Gaps = 37/462 (8%) Query: 1 MAQFYSAKRRTTTRQIIT----------------VSVNDLDSFGQGVAR-HNGKTLFIPG 43 MA + T + + +S+ L G+GVAR +GKT+F+ Sbjct: 1 MAMLGKRRPPRTANERVRRERGSATRRDDATADGLSIERLAHDGRGVARDPHGKTVFVDQ 60 Query: 44 LLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRS 103 LP E V V +K++ A VV RL+ SPER TP C ++G CGGC QH ++ Q+ Sbjct: 61 ALPGERVRVAVHRQRKRFDEAHVVERLATSPERATPPCAYYGRCGGCDLQHLDLEAQREH 120 Query: 104 KSAALARLMKHDVS-----EVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVD 158 K L L EV+A YRRRARL + + +GFR GS ++D Sbjct: 121 KRRTLDELFTRQGLTLPEIEVLAGEGLAYRRRARLGVKCDAE-GTPHLGFRARGSEHLID 179 Query: 159 VKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREK 218 + C +L P L L+ +RACL L+A R +GH+EL+ G +++R + D + Sbjct: 180 IDSCVVLEPVLSRLIAPLRACLVQLEAPRRVGHIELIATAEGACVVVRQLREV-PGDEAR 238 Query: 219 LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFS---------PRDFIQVNAG 269 RF+ + L E P ++ + L P DF+Q+NA Sbjct: 239 WRRFAAEHDVTLAWRVGREAPTLRWLHAPRGEALHVTLVLDDTTLSLGCVPGDFLQINAD 298 Query: 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR 329 VN ++V AL WL + E+RVLDLF G+GNFTL LA + AS+ G+EG PA+VE+ NAR Sbjct: 299 VNARLVRTALAWLAPRGEERVLDLFAGVGNFTLALAPRVASITGIEGSPAMVERLADNAR 358 Query: 330 LNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSC 389 GL V +L V + D V++DP R GA + + + ++YVSC Sbjct: 359 RAGLHQVGAQQSDLATQVPEVAA----VDWVIMDPPRGGAEALCRALADSPVTTLLYVSC 414 Query: 390 NPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 +PA LARD+ L++ GY I R A+ DMFPHT HLESM+L +R Sbjct: 415 DPAALARDAARLVQGGYRIQRAALADMFPHTAHLESMLLLTR 456 >UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y248_PARUW Length = 434 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 110/435 (25%), Positives = 192/435 (44%), Gaps = 18/435 (4%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 T + + L G G+ R++G +F+P P + + E KK +A A++V+ Sbjct: 5 LTIHTQVEGEITALAFGGAGILRYHGFVIFVPFTAPGDQIICRIIEIKKSFAVAELVKLK 64 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHDVSEVIADVP-- 124 S R P CP+FG CGGCQ QH + Q K + L R+ V V + Sbjct: 65 QPSSLRVQPPCPYFGKCGGCQLQHLNEQTQLNYKLTAITDTLKRIGHLKVPSVEMNTAQL 124 Query: 125 -WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 W YRR L L Q Q G+ ++ + CPI + ++ ++ + +L Sbjct: 125 NWAYRRHITLHL--KSFNQSFQAGYIATDHFSLISIDTCPIFNNLHDPIISILQKFISTL 182 Query: 184 -QAMRHLGHVELVQATSGTLMILRHTAPLSSADR----EKLERFSHSEGLDLYLAPDSEI 238 + G + L++ + ++ L+ +R E LE++ L + Sbjct: 183 PNPNQQDGRLTLLKNQNSQYILSFQFCSLNELNRILFQEALEKYP---IFSGILVTSPKK 239 Query: 239 LETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 + L F+P+ FIQ + + + + ++LDL+CG G Sbjct: 240 QWIIGNPYSEQKIENLIFRFTPQAFIQNHPEQSLYIYKKICSLTIQLKSKKILDLYCGFG 299 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 +L LA+Q V G+E + ++N++LN L +V F ++E+ + ++ D Sbjct: 300 ITSLLLASQGHFVTGIEYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQKCVD 359 Query: 359 KVLLDPARAGAAGVMQQIIKLE-PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 V+++P R G + + +I+ P ++Y+SC P+TLARD L + Y I DMF Sbjct: 360 LVIVNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDLYEIHECTAYDMF 419 Query: 418 PHTGHLESMVLFSRV 432 P T H+E++V +V Sbjct: 420 PQTSHVETLVHLKKV 434 >UniRef50_A4BBK4 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBK4_9GAMM Length = 414 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 126/442 (28%), Positives = 209/442 (47%), Gaps = 37/442 (8%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M +F +K ++ + +++ L G+G+ +G+ + + LP E E + + + Sbjct: 1 MRRF-QSKPKSRIPSTVELTIERLSHDGRGIGHVDGRVVMVDNALPGEVIEAGIDQGNTR 59 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE-- 118 + V R LS S +R+ P C +G CGGCQ QH S Q K A+ + Sbjct: 60 LWQGHVRRYLSVSEQRQEPVCHLYGQCGGCQLQHLSATDQLALKQQAVQDHFHRNRLPAI 119 Query: 119 ----VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLP 174 + P GYR RAR L+ +GF A ++ V+QCP++ +L+ALL Sbjct: 120 GFTDPLVSAPVGYRHRARFHLSKSG-----TLGFHGARGRQVIPVEQCPVITTELQALLD 174 Query: 175 KVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234 +VR ++ L +EL +G S + R+ E++ +++ Sbjct: 175 RVRREAP----LKGLQQLELTVDDAGKAGARAV--KASDSARQAFEQWQNAQDW------ 222 Query: 235 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 E Y + +T P DF QVN +NQ+M+ + +WL + +DR+LDLF Sbjct: 223 --------LTEELTYQAGTQVVTARPGDFTQVNREINQQMLKQIRQWLQPREDDRLLDLF 274 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW-- 352 CG GN +L + + A+++G+E +E + + + F +L + Sbjct: 275 CGNGNISLAMLDEVAAILGLESSGPAIEAAKAAVKHH--PKAQFLEADLFTSCLQVRPQV 332 Query: 353 AKNGFDKVLLDPARAGAAGVMQQIIKLEP-IRIVYVSCNPATLARDSEALLKAGYTIARL 411 A+ +LDP RAGA V+Q + +L R+VYVSC+PATLARD L + + + Sbjct: 333 AEFAPTIAVLDPPRAGAEQVVQWLSELPSLTRLVYVSCDPATLARDLAQLTADHWHLRKA 392 Query: 412 AMLDMFPHTGHLESMVLFSRVK 433 ++DMFP T H+E+MVL + K Sbjct: 393 GLIDMFPQTRHIETMVLLKKNK 414 >UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS6_PETMO Length = 446 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 108/448 (24%), Positives = 191/448 (42%), Gaps = 35/448 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 + + + + L G G+AR+ K + + P E V T K A + L S Sbjct: 3 NEEVKIVIEKLVYGGYGMARYADKIYMVNNVYPGEFVSVIPTRTNKNLVFADLKEILQPS 62 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSK----SAALARLMKHD----VSEVIADVPW 125 +R + +C HF CGGCQ Q +SK L R+ K D + +D+ W Sbjct: 63 HQRVSSKCKHFPECGGCQWLDYDYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIW 122 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS--- 182 GYR R + + +L++G A S++++D+ CPI + + K R + Sbjct: 123 GYRNRMEYTFQ---ENNKLKLGLNIANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNI 179 Query: 183 --LQAMRHLGHVELVQAT----SGTLMILRHTA----PLSSADREKLERFSHSEGLDLYL 232 G ++ + M++ T P ++ ++ H L + Sbjct: 180 EIYDKKTKKGILKHLVIRRSFSKNQTMVIIVTNTEYLPYEEEIKQFFQQNFHPYSLIHLM 239 Query: 233 APDSEIL-----ETVSGEMPW-YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL--DV 284 ++ +T+ GE + + + P F Q N V QK++ LE+ + Sbjct: 240 NSSDSVVLRGPYKTLLGEGVLNEEFDDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNA 299 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 Q + +LDL+ G+G F++ + + VE V+ N+ +N +NV F + + Sbjct: 300 QKDATMLDLYSGVGLFSIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILASSK 359 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIR-IVYVSCNPATLARDSEALLK 403 + + FD V+LDP R G Q++ + I+YVSC+P+T ARD K Sbjct: 360 PYL--MKNSSKRFDYVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTK 417 Query: 404 AGYTIARLAMLDMFPHTGHLESMVLFSR 431 G+T+ + DMFPH+ H+E++ + + Sbjct: 418 NGFTLKSVQPFDMFPHSYHIENVGILEK 445 >UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S2X4_FINM2 Length = 442 Score = 364 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 115/446 (25%), Positives = 175/446 (39%), Gaps = 32/446 (7%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 ++I+ V +G+ + + I + + KK + K+V +L S Sbjct: 2 KKILEAKVEYNVFPNKGICKIDDNLYSIKNTIQGQTISFQRKRKKKGFIEGKLVEKLEKS 61 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--HDVSEVIADVP--WGYRR 129 P CP CGGC Q D++ K L L K +D + P GYR Sbjct: 62 PLETIEGCPVNERCGGCIYQKLEYDVECDLKKKTLTELYKDIYDEDIIFHPSPILQGYRN 121 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRACLGS-----L 183 + + K L +G +I D C I+ + V+ Sbjct: 122 KMEYTFGDSVKGGPLVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFF 181 Query: 184 QAMRHLGHVELVQAT----SGTLMILRHTAPLSSADREKLERFS-----------HSEGL 228 + ++H G + MI T D F+ H+ Sbjct: 182 KKIKHTGLLRHFIIRKSFSDDEYMINLVTTS-DKFDVNDFVEFAKQIDNRIVSIYHTIND 240 Query: 229 DLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 ++ A + LE + G+ + NGL SP F Q N +++ RALE Sbjct: 241 NISDAVIVDKLELLHGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSG 300 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 V DL+CG G A ++ SV+GVE V VEK ++NA LNGL N F ++ + Sbjct: 301 KNVYDLYCGTGTIAQIFAKKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFM 360 Query: 348 TKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGY 406 K D V+LDP R G + ++I + P + +Y+SCNP T D + ++ GY Sbjct: 361 EKVEKK----DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGY 416 Query: 407 TIARLAMLDMFPHTGHLESMVLFSRV 432 I L D FP T H E++VL SR Sbjct: 417 EIKSLEFFDQFPRTYHCEAVVLLSRK 442 >UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7H7_9ACTN Length = 442 Score = 363 bits (933), Expect = 6e-99, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 193/447 (43%), Gaps = 35/447 (7%) Query: 13 TRQIITVSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 T + + +++ + G+A + GK +F+ G + + E V +D K + RA+ L Sbjct: 2 TGRNMKLTIESMTYGADGLAHADNGKAVFVQGAVAGDTVEAEVVQDGKSFMRARTTEILE 61 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIAD-- 122 S +R P CP G+CGGC + S Q +K L ++ V E++ Sbjct: 62 PSLDRIQPPCPFVGICGGCSWGNLSRTAQLAAKEQNLRSTLERIGKFAPEQVDELVQPIC 121 Query: 123 ---VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 WGYR + L ++++G S IV V CP+ + L V Sbjct: 122 HTKDDWGYRNKIEL--EPTVVNGRVRLGMHGVDPSKIVAVDSCPLFDKRFPKALKSVVGA 179 Query: 180 LGSLQAMRHLGHVEL-----VQATSGTLMILRHTAPLSSADREK-LERFSHSEGLDLYLA 233 L L +LG + + + + + T + + L +H + ++ Sbjct: 180 LNYLSGSHNLGLERVGIRASRRTKALEVALWTPTGSFPRSQVSRVLADAAHPTSIVRVMS 239 Query: 234 PDSEI------LETVSGEMPWYDSNGL-RLTFSPRDFIQVNAGVNQKMVARALEWLDVQP 286 + +E ++GE W ++ ++ S F QVN + ++ +E LD Q Sbjct: 240 KGEKKARRVSKVEMLAGEGSWTENIAEGQMRLSAPSFFQVNTKGAEILIELVMEALDPQE 299 Query: 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 ++ +DL+CG G FTLPLA + V VE V ++N +N L NV + + Sbjct: 300 DELAVDLYCGAGTFTLPLARRCDFVAAVEAYGPAVRDLRRNLEINKLDNVDVIGGDAVRE 359 Query: 347 VTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG 405 Q D +++DP RAG + I + YVSC+PATLARD + ++ G Sbjct: 360 FPDQDA-----DVLVVDPPRAGLAPEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEG 414 Query: 406 -YTIARLAMLDMFPHTGHLESMVLFSR 431 ++ ++ +D+FP T H E++V R Sbjct: 415 TFSPVKITPVDLFPQTFHCETVVHLKR 441 >UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clostridiales RepID=A9KRF2_CLOPH Length = 554 Score = 362 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 99/404 (24%), Positives = 176/404 (43%), Gaps = 41/404 (10%) Query: 55 TEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH 114 T KK+Y + CPH CGGC + Q + K +++L+ Sbjct: 167 TSKKKKYGEYE---------------CPHSKKCGGCHYLDLPYEEQLKIKQKQVSKLLSD 211 Query: 115 DV---SEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEA 171 + + P+ YR + + K + G K G+ I+ C I + + Sbjct: 212 FCKVHPILGMEHPYHYRNKVQAVFGRDAKGN-IISGVYKEGTHQIIPTTSCLIEDKKADE 270 Query: 172 LLPKVRACLGSLQAMRH--------LGHVELVQA-TSGTLMILRHTA-PLSSADREKLER 221 ++ +R L S + + L +V + + TSG +M++ A P+ + + + Sbjct: 271 IIGTIRGMLKSFKIKTYDEDSGYGLLRYVLVKRGFTSGEIMVVLVIASPILPSKKNFVAA 330 Query: 222 F--SHSEGLDLYLAPDSE--------ILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGV 270 +H E + L ++ + G+ D G S + F QVN Sbjct: 331 LRKAHPEITTIVLNINNRTDSLILGDRETVLYGKGYIEDTLCGNVFRISSKSFYQVNPVQ 390 Query: 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL 330 +++ A++ + ++RV+D +CG+G L + A V+GVE ++ NA+ Sbjct: 391 TERLYQLAIKAAGLTGKERVIDAYCGIGTIGLVASKNAKEVLGVEVNKEAIKDAIANAKR 450 Query: 331 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSC 389 NG+ N FY+ + E + D V++DP RAG+ + + ++P R+VY+SC Sbjct: 451 NGITNEHFYNSDATEFMLAMAEKGEKADVVIMDPPRAGSTEQFIDAVESVQPSRVVYISC 510 Query: 390 NPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 NP TL RD + K GY + +DMFP TGH+E++ L ++K Sbjct: 511 NPVTLQRDLKYFTKKGYQVKEAWPVDMFPWTGHVETVCLLYKMK 554 >UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase RumA n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D2C9 Length = 470 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 119/467 (25%), Positives = 208/467 (44%), Gaps = 45/467 (9%) Query: 11 TTTRQIIT-VSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 I V V D + G+ VA+ +G+ +FI +P + +V T+ K Y + Sbjct: 3 KKKNITIENVIVTDAGAKGKSVAKAPDGRIIFINNAIPGDVVDVQTTKKKSAYYEGFATK 62 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA----RLMKHDVSE----VI 120 S R TP C HFG CGGC+ Q + + Q K + RL K + E V Sbjct: 63 FHEYSNRRVTPVCAHFGYCGGCKWQDMNYESQLFYKQKEVENNLVRLGKITIPELMPIVA 122 Query: 121 ADVPWGYRRRARLSLNYLPK------------TQQLQMGFRKAGSSD-IVDVKQCPILAP 167 ++ + YR + S + + Q+ +GF AG+ D I+D+ +C + Sbjct: 123 SENIYFYRNKMEFSFSDMRWLTPEEIQNADTIEQRNGLGFHIAGAWDKILDIDKCYLQED 182 Query: 168 QLEALLPKVRAC-----LGSLQAMRHLGHVE---LVQATSGTLMILR----HTAPLSSAD 215 A+ +++ + + G + + +++G +M++ + + Sbjct: 183 PSNAIRLEIKRFALENNIAFYSPRQQTGVLRSMMIRISSTGEIMLVIQFFSDSKKCNLLL 242 Query: 216 REKLERFSHSEGLDLYLAPDS------EILETVSGEMPWYDSN-GLRLTFSPRDFIQVNA 268 + F L + + L+ G Y+ GLR + + F Q N+ Sbjct: 243 EHIAQTFPQITSLQYCINSKGNDAIYDQDLKIYKGTDCIYEEMEGLRFKINAKSFYQTNS 302 Query: 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA 328 K+ ++ D++ ++ V DL+ G G +A +A VVGVE VP + + NA Sbjct: 303 KQAHKLYQITRDFADLKGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAIADAKANA 362 Query: 329 RLNGLQNVTFYHENLEEDVTK-QPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVY 386 + NG++NV+FY +++ A D ++ DP R G V++QI+++ P +IVY Sbjct: 363 KANGIENVSFYVGDMKNVFNDTFIKANGTPDVIITDPPRDGMHKDVVEQILQIAPPKIVY 422 Query: 387 VSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 VSCN AT ARD L + Y + ++ +DMFP T H+E++VL + Sbjct: 423 VSCNSATQARDLALLDEM-YKVTKVQPVDMFPQTYHVENVVLLEKRN 468 >UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=16 Tax=Fusobacterium RepID=Y1713_FUSNN Length = 464 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 93/437 (21%), Positives = 193/437 (44%), Gaps = 32/437 (7%) Query: 26 SFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFG 85 G+G+ +NG +F+P +P++ E+ + KK YAR + + SPER F Sbjct: 29 FGGEGLGYYNGFAVFVPMSIPEDELEIEIISIKKTYARGLIKNIIKASPERIDNHKFTFE 88 Query: 86 VCGGCQQQHASVDLQQRSKSAALARLMKHDV--------SEVIADVPWGYRRRARLSLNY 137 GC + Q + K + +++ + ++ + YR + + Sbjct: 89 DFYGCDFAMLKYESQLKYKRFMVEEVIRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSV 148 Query: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-----LQAMRHLGHV 192 ++ GF K S ++ +V + + + ++ +++ L H G + Sbjct: 149 YA--NKIITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGIL 206 Query: 193 ELVQATSG-----TLMILRHTAPLSSADREKLERFSH--SEGLDLYLAPDSEILETVSGE 245 + + ++++ ++ ++ ++ L + E +Y++ +S+ TV GE Sbjct: 207 RNIMIRTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIKSIYISLNSKKTNTVIGE 266 Query: 246 MPW---------YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + N + SP F Q+N +++ A+ + D ++D + G Sbjct: 267 KNILIYGEKSIKENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSG 326 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 G + +A +A V +E V + E G++ A+ NG++N+ F + +E+++ K Sbjct: 327 TGTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEKELVKLVNNNQK 386 Query: 357 FDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 D ++ DP R G ++ ++ +L +VY+SCNP+T ARD + + GY + +L +D Sbjct: 387 IDTIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVLKKLQAVD 446 Query: 416 MFPHTGHLESMVLFSRV 432 MFP T H+E + L R Sbjct: 447 MFPQTSHIECVGLIERK 463 >UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ40_9FIRM Length = 450 Score = 361 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 101/449 (22%), Positives = 184/449 (40%), Gaps = 32/449 (7%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLS 71 ++ + + ++ K + G + + V V ++++ AK++ L Sbjct: 4 RKKKYLEGIIEKVNFPNMSEFTFEDKKVNFKGGIEGQKVSVVVGRKREKHMEAKLLEILE 63 Query: 72 DSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK----HDVSEVIADVPWGY 127 SP P CP++ CGGC Q + + + K + L + + + + Y Sbjct: 64 KSPLETNPTCPNYIECGGCSYQSVPYEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAY 123 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQL----EALLPKVRAC-LG 181 R + + + K + +G K +++D K+C ++ A++ VR L Sbjct: 124 RNKMEYTFADMYKDSPIMLGMHKKNRFYEVIDTKECNLVHIDFEIIRNAVIDFVREKNLP 183 Query: 182 SLQAMRHLGHVELVQAT----SGTLMILRHTAPLSSAD-------------REKLERFSH 224 ++ H G + + +G +M+ T S D ++ H Sbjct: 184 FVKKRTHEGLLRHLIIRYALTTGEIMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVH 243 Query: 225 SEGLDLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 +E L A E + + G+ + L +P F Q N + ++A+E Sbjct: 244 TENDSLADAVVPEKINIIFGKEYITEKIFDLEFKVTPFSFFQPNVFGAINLYSKAIELCG 303 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 V DL+ G G +A +A +V G+E V VE ++A+ NGL N TF ++ Sbjct: 304 DIENKVVFDLYSGTGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDV 363 Query: 344 EEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALL 402 + + K D +++DP R G +++II IVY+SCNP T RD + LL Sbjct: 364 ---LEEIENRKEMVDVIIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQILL 420 Query: 403 KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + GY + L + + FP T H E++ L R Sbjct: 421 QNGYKLITLKIFNQFPRTVHCEAVALLER 449 >UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6H3_HYDS0 Length = 415 Score = 360 bits (925), Expect = 5e-98, Method: Composition-based stats. Identities = 121/430 (28%), Positives = 197/430 (45%), Gaps = 33/430 (7%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + L G G+ R K F+P LP E ++ +KK Y+ AK+ + SP R Sbjct: 1 MIVEIEKLVHNGYGMGRFQNKVYFVPFTLPNEKVKIKDIVNKKDYSMAKLEAVVEPSPHR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGYRR 129 P CP+FG CGGC QH Q KS L +K +++ +I D P+ YR Sbjct: 61 IEPLCPYFGRCGGCHFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRN 120 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R + + + +G + D V V+ CPI + + L+P ++ Sbjct: 121 RVKFKVR---NKELGFVGVDE----DFVKVEHCPISSKAINDLMPFLKEFAKHFNPS--- 170 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERF------SHSEGLDLYLAPDSE--ILET 241 V + + A D+EKL++F + G+ L E I+ + Sbjct: 171 --WISVFYSDTQKEYMVKFASYDYIDKEKLKKFKEHLTPKNVVGITLVKDDKREDKIILS 228 Query: 242 VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 + + + ++ S F QVN V QK++ LE + DRVLD + G+G F Sbjct: 229 IGTPFTFIELLKIKYRISVNSFFQVNIKVAQKLLQTLLEKENY--FDRVLDDYGGVGLFG 286 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 L LA ++ SV + + + + +A++N + NV+FY +N + K + + ++ Sbjct: 287 LHLARRSGSVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLKKSLYK--HANLLV 344 Query: 362 LDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 LDP R+G + + I+ +P I Y+SC P++LARD + L K Y I + M DMFP T Sbjct: 345 LDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKK-YQIKEIYMADMFPQT 403 Query: 421 GHLESMVLFS 430 H+E+ V Sbjct: 404 YHIETAVKLE 413 >UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=36 Tax=Lactobacillales RepID=Y3226_LACPL Length = 481 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 106/458 (23%), Positives = 195/458 (42%), Gaps = 35/458 (7%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + Q +++ L G+G+ + F+ G LP+E VT +Y AK Sbjct: 25 KVQATVNIGQRFPLTIRRLGINGEGIGYYKHVITFVKGALPEEVVVAEVTAVHPRYLEAK 84 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE------- 118 + SP+R PR + G GG + +H Q K + + ++ Sbjct: 85 IRSIRKPSPDRVDPRDAYAGEVGGFELEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDV 144 Query: 119 ---VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPK 175 + P+ YR +A+ + + + G K S D+VD+ C + P ++ + Sbjct: 145 RPTIGMTNPYEYRNKAQFQVRLI--DGHVAAGLYKENSHDLVDLPTCSVQMPATMTVMRQ 202 Query: 176 VRACLGS-----LQAMRHLGHVELVQAT----SGTLMILRHT-APLSSADREKLERFSHS 225 V A L + G V+ + +G + ++ T P + L + + Sbjct: 203 VVAWLEELQVPIYDEEHNSGIVKTIVVREAAATGEIQLVFITNTPKLPKKHQLLMKIAEK 262 Query: 226 E--GLDLYLAPDSEILETVSGE---------MPWYDSNGLRLTFSPRDFIQVNAGVNQKM 274 + + ++ + G+ + +GL S R F Q+N +K+ Sbjct: 263 LPMVVSVMQNINAGKTSLIWGDQTTLLAGKPTITEELDGLVFDLSARAFFQLNPQQTKKL 322 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 A E L++ P + ++D + G+G L LA A V G++ +PA V NA+ N + Sbjct: 323 YRLAREALNLAPNETLVDAYSGVGTIGLSLADVAKEVRGMDTIPAAVADANANAQRNQIT 382 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPAT 393 N + E + + + D +++DP R G V + I++ P ++VY+SCNP+T Sbjct: 383 NAHYEVGEAEVLLPQWLASGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPST 442 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 LA+D +AL + GY + + +DMFP T E++V F++ Sbjct: 443 LAQDLQALTR-GYQVDYIQSIDMFPQTARCEAVVRFTK 479 >UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRS2_PERMH Length = 421 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 111/434 (25%), Positives = 193/434 (44%), Gaps = 30/434 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + L G+G+ + +G+ F+P +LP E EV + ++KK + + + + SP R Sbjct: 1 MIVKIEKLVYGGKGIGKLDGRVCFVPFVLPDEEVEVEIKKEKKSFIECEPLSIVEKSPFR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI--------ADVPWGYR 128 P C +F CGGC QH + + Q K+ L + I + P+ YR Sbjct: 61 TDPPCRYFRYCGGCDYQHITYEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYR 120 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 R +L + +GF S I+++ C +L + ++ VR L L + Sbjct: 121 NRTQLKIRGEK------IGFYMRESRQIINIDSCLLLKEDINGMISGVREILKFL--IFQ 172 Query: 189 LGHVELVQATSGTLMILRH----TAPLSSADREKLERFSHSEGLDLYLAPDSE--ILETV 242 V + ++ G ++ + S + + + Sbjct: 173 PEQVHIYSSSDGEALVKFVYQKRVRRFPLGLKHLRSFLSEKLKGAGIYHRKDDLLKRDVL 232 Query: 243 SGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 GE Y+ G++ S F QVN + ++ L+ + ++ +DLFCG+G T Sbjct: 233 LGESYIYEEYGGIKFRVSMDSFFQVNVYQVENLLDAVLQNI--GDHEKAVDLFCGVGTLT 290 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 LP A + G+E P V N +LN ++N F+ + + A+ D V+ Sbjct: 291 LPSARYIKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDANR--SGGFIAELKPDLVI 348 Query: 362 LDPARAGA-AGVMQQIIKL-EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 +DP R G +++ + RI+YVSCNP+TLARD L K Y++ ++ M+DMFP Sbjct: 349 IDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYL-KERYSVEKVYMIDMFPQ 407 Query: 420 TGHLESMVLFSRVK 433 T H+ES+V+ ++K Sbjct: 408 TYHIESVVVLQKMK 421 >UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37219 Length = 416 Score = 359 bits (923), Expect = 8e-98, Method: Composition-based stats. Identities = 108/413 (26%), Positives = 175/413 (42%), Gaps = 39/413 (9%) Query: 60 QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM------- 112 +YA V + ++ S +R P CP + +CGGC H S + + R KS + Sbjct: 3 RYAYGIVEKLITPSRDRIEPVCPKYKICGGCVFMHMSYEAECRIKSNIVTEAFARIGHLV 62 Query: 113 -KHDVSEVIADVPWGYRRRARLSLNYLPKTQQ---LQMGFRKAGSSDIVDVKQCPILAPQ 168 K + +D GYR +A+ T + GF S +V V C + Sbjct: 63 PKEILPIFSSDSIEGYRNKAQYPYADYKYTDNTVFPKFGFYAPRSHRLVPVTYCVLQPAA 122 Query: 169 LEALLPKVRACLG--------SLQAMRHLGHVELVQATSG----TLMILRHTAPLSSADR 216 +L LG G + + G +M+ TA ++ R Sbjct: 123 FGDILRHCEEELGTADFNAITPYNEESGNGVLRHLYIRQGFHSKEIMVCFVTAKDNNHIR 182 Query: 217 EKLERFSHS------EGLDLYLAPDSEILETVSG---------EMPWYDSNGLRLTFSPR 261 ++L ++ E + L + + + G + G+ ++ SP+ Sbjct: 183 KQLTDLGNTLIADTHEIKSVMLNVNPQKTNVILGKKTVCLIGKDTIADTLCGVPVSLSPQ 242 Query: 262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALV 321 F QVN +K+ A A + ++ +LDL+CG G L +A V+GVE VP + Sbjct: 243 SFYQVNTAQAEKLFAEAKRLAAPKKDELLLDLYCGAGAIGLSMADTVGKVIGVEVVPQAI 302 Query: 322 EKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGV-MQQIIKLE 380 E + NA+ G+ N F+ + E K D ++LDP R G + + +++ Sbjct: 303 EDAKANAKRAGISNAEFFAGDAGEIAAKFAAEGRKPDIIVLDPPRKGCDTLTLDACLEMA 362 Query: 381 PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 P RIV +SCNP+T ARD+ L + G+T+ L D FP T H+E +VL SR K Sbjct: 363 PSRIVMISCNPSTAARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSRQK 415 >UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8N4_9FIRM Length = 457 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 100/437 (22%), Positives = 180/437 (41%), Gaps = 28/437 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + ++ G+G+A H GK +FI +P+E E + D+ Y ++ R + S +R Sbjct: 1 MKTTIKKWGINGEGIAFHEGKPVFIENAIPEEVIEFDIKSDENTYLIGEMTRLVEQSSKR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM-------KHDVSEVIADVPWGYRR 129 P CP + CGGC H Q + K L + + + P YR Sbjct: 61 RYPLCPIWKECGGCALMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLSYRN 120 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS-----LQ 184 +L + +L G + ++ +++C + + LE V + Sbjct: 121 SCKLPFG--EEYGELYTGMYERDTNHFQKMERCYVHSKLLEQTRQAVLKIMNEHHLKMYD 178 Query: 185 AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE---- 240 + G+ LV + + + + E + + EG+ + Sbjct: 179 DKKKTGYRTLVMKEFDSKIQIIFVTGKENLSEEFIHDVTQLEGVVSIWQSVKTETKREVF 238 Query: 241 -----TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 E ++L+ PR F Q+N + + +W+ ++ + Sbjct: 239 GDMRFIWGEEKMHLQLEDIQLSLLPRSFFQLNTKQSVNLYNVVKDWMPRSKTT--VEAYS 296 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 G+G +L + +A ++GVE + V+ +NA LN NV+F E+ + K+ Sbjct: 297 GIGAISLFVKDKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHLVQEKD 356 Query: 356 GFDKVLLDPARAGAAGVMQ-QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 D +++DP R+G M+ I+K + ++YVSCNPATLA+D L K Y I ++ + Sbjct: 357 V-DTLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDLGVLKKE-YRIVKIQPV 414 Query: 415 DMFPHTGHLESMVLFSR 431 DMF T H+ES+ L R Sbjct: 415 DMFSQTPHVESVTLLVR 431 >UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2 Tax=Aquificaceae RepID=Y257_AQUAE Length = 425 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 119/432 (27%), Positives = 205/432 (47%), Gaps = 25/432 (5%) Query: 13 TRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSD 72 + + ++V L G G +R NGK +F+ P+E E V ++KK Y A V + L Sbjct: 2 KDKPLKLTVEKLVYGGYGFSRLNGKAVFVRFASPKELVEAKVVKEKKDYTEAVVTKVLIS 61 Query: 73 SPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAA----LARLMKHDVSEVIADVP---- 124 SP R CP++G CGGCQ QH + + Q RSK L R+ K ++P Sbjct: 62 SPARRKAPCPYYGECGGCQIQHLNYEEQLRSKKDILLESLERIGKIKEVPYEGEIPSKKE 121 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQ 184 + YR R + + Q+ ++GF + ++VDV++C + ++ L+P +R L ++ Sbjct: 122 FNYRVRVQFKI------QENRVGFYRWDVKEVVDVEECLLAHERINELIPHIREVLKVIK 175 Query: 185 AMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSE---GLDLYLAPDSEILET 241 ++ + HV + + + E G+ Y + +++ Sbjct: 176 DLQEV-HVNYSPTRDEATLKFVTITHTDEKLLQNILENVLPEWVVGIGDYGKVGNSLVKR 234 Query: 242 --VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN 299 V E + D + S F QVN + + + L++ + + LDL CG+G Sbjct: 235 YKVGREHIFMDVGKWQYRVSNDSFFQVNYTLWEDFLKEVLDF--SESYKKGLDLHCGVGF 292 Query: 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDK 359 FT+PL+ Q + G + P+ ++ + NA++N NV F + + ++ + Sbjct: 293 FTIPLSEQGNFIEGADANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRRI--GEVINL 350 Query: 360 VLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFP 418 V++DP R+G ++K +P +IVY+SCNP T ARD + L K GY + RL ++D FP Sbjct: 351 VVVDPPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFP 410 Query: 419 HTGHLESMVLFS 430 T H+ES+ L Sbjct: 411 QTYHIESIALLE 422 >UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVF8_OPITP Length = 493 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 122/489 (24%), Positives = 186/489 (38%), Gaps = 77/489 (15%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHN-------------------GKTLFIPGLLPQEN 49 + Q I + ++ L + G G+ R G + +P LP E Sbjct: 17 QPFAYHQEIELEISTLTNLGSGLGRVPLTGSQLSTLGSQLTAQPVAGWVVMVPFTLPGER 76 Query: 50 AEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALA 109 V + K ++ A +V L+ SP R P CP FG CGGCQ QH + Q K +A Sbjct: 77 VRARVFRNHKNFSEADLVSVLTPSPHRVMPGCPLFGRCGGCQYQHLAYAEQLAWKRRQVA 136 Query: 110 RLMKHDV-------SEVIADVPWGYRRRARLSLNYLPKTQQLQ----------------- 145 L++H + + +GYR + + + Sbjct: 137 ELLQHLGGVEFAVSPVIPSPREYGYRSKITPHFAAPKAARTIAAGSTPAAQESSVPAAVS 196 Query: 146 -------------------MGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 +GF + G+ DI+DV +CPI + L +VRA L + Q Sbjct: 197 TPDGPGEARASSAAVPDWPIGFLRQGTRFDIIDVPRCPIATDAINTRLAEVRAELRT-QR 255 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 R+ L+ +G R T + E++ G+ +E S Sbjct: 256 DRYTRGATLLLRDAGG----RVTTDYDAVVTEEI-------GVVGLDDAGAEKPGLTSPA 304 Query: 246 MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 LRL F RDF Q N + + E ++D +CG G F L A Sbjct: 305 PSNRAGAPLRLHFLARDFFQNNPFILPAFTSYVREQAAASGARFLVDAYCGSGLFALASA 364 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 + V GVE + V ++NA NG+ N +F + + V++DP Sbjct: 365 SAFERVAGVEISESSVRFARENAAANGITNASFLAADAAAIFAGLAFP-AAESVVVIDPP 423 Query: 366 RAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 R G +QQ+ P +VYVSC+PAT RD L AGY + + D+FP T HLE Sbjct: 424 RKGCDREFLQQLFAFGPRAVVYVSCDPATQMRDLRDFLAAGYELIAVQPFDLFPQTRHLE 483 Query: 425 SMVLFSRVK 433 ++ R + Sbjct: 484 CVITLRRAR 492 >UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBR4_9CHLA Length = 484 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 111/481 (23%), Positives = 185/481 (38%), Gaps = 59/481 (12%) Query: 9 RRTTTRQIITVSVNDLDS--FGQGVARHNGKT---LFIPGLLPQENAEVTVTEDKK-QYA 62 R Q + + + D G+GV + KT + +P +P + + +V K+ + Sbjct: 2 RAFKQAQPVELDIVDFSKKGNGKGVLKREDKTDLSIEVPFSIPGDRVKASVLFKKRMKKQ 61 Query: 63 RAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-------HD 115 + K+ + +P R + +C HF CGGC+ Q Q R K + L Sbjct: 62 QGKLEEVIKAAPVRISAKCAHFATCGGCRWQQMGYAEQLRLKEEKIRALFSAILTPDVQF 121 Query: 116 VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLP 174 + D PW YR + S + + +G S + ++ +C + L Sbjct: 122 FPIIPCDDPWQYRNKMEFSFSTDLSQNKY-LGLIMDSSRGKVFNLTECHLTNSWFVDALK 180 Query: 175 KVRAC-----LGSLQAMRHLGHVELVQATSGT------LMILRHTAPLSSADREKLERFS 223 R L + R+ G + + G +++ P + + L+ F Sbjct: 181 VTRNWWESSKLDAYHHYRNTGSLRTLTLREGQRTGDRMVILTVSGNPDYALHKNDLDAFV 240 Query: 224 HSEGLDLYL------------------------------APDSEILETVSGEMPWYDSNG 253 + L PD + Sbjct: 241 AGLRASIELDRPECRLSIFLRIHQIAKGMASQFYEMVLYGPDQIREKLYIQSQSEEQPVP 300 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 L SP F Q N +++ + AL+ + V DL+CG G ++ L+ A +VVG Sbjct: 301 LEFNISPSAFFQPNTRQAERLYSLALQLSSISTPITVYDLYCGTGTLSICLSKFAKTVVG 360 Query: 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK--NGFDKVLLDPARAGAAG 371 VE P V + NA NG NV F + E +TK D V++DP RAG Sbjct: 361 VEICPEAVLDARSNAAKNGCSNVHFLCGAVHEQLTKIIEENLFPLPDLVVVDPPRAGLDP 420 Query: 372 -VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 +Q +IKL P +I+YVSCNP T + L+ GY + + +D FPHT H+E++ + + Sbjct: 421 HALQHLIKLSPKKILYVSCNPLTQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIAVLT 480 Query: 431 R 431 + Sbjct: 481 K 481 >UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4RQV8_OSTLU Length = 536 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 121/486 (24%), Positives = 188/486 (38%), Gaps = 65/486 (13%) Query: 11 TTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 ++V D + G+GV + NG L G P E VT+ +K+ A Sbjct: 51 VRVGDEVSVECVDFATSGEGVCKLANGMVLLCDGATPGEVVRARVTKLRKKLAHGAKTAT 110 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-----------DVSE 118 +P T CPH CGGC QH + D Q K + ++ + Sbjct: 111 ERAAPNAVTAPCPHHEQCGGCAWQHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGAC 170 Query: 119 VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSD-IVDVK-QCPILAPQLEALLPKV 176 V AD YR + + + +G R G++D +VD+ C + + + + +L + Sbjct: 171 VGADETSRYRNKMEFAFA-SGTRGKTVVGLRPRGANDSVVDLSGGCLLQSEEADRVLAAI 229 Query: 177 RAC-------LGSLQAMRHLGHVELVQATS--------GTLMILRHTAPLSSADR----- 216 R L + G + V + +M+ T + + Sbjct: 230 RETLERADGRLEAFDRTSGEGTLRSVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLA 289 Query: 217 ---------EKLERFSHSEGLDLYLAPDSEILETVSGE-MPWYDSNGLRLTFSPRDFIQV 266 + H+ G A ++ +E V GE NG+ S F Q Sbjct: 290 GLIDVVSKVPGVVSVVHTSGGTTTKAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQT 349 Query: 267 NAGVNQKMVARALEWL--DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG 324 N ++V + E + VLDLFCG+G L +A+ + V+G E VP V+ Sbjct: 350 NTEQAARLVRQVREACAFSGDKSEIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDA 409 Query: 325 QQNARLNGLQNVTFYHENLEEDVTK----------QPWAKNGFDKVLLDPARAGAAGVMQ 374 ++NA LN + N FY +L + D V+ DPAR G + Sbjct: 410 KRNAELNNITNAKFYRVDLARLNPSKGPKGLLTTPKGKELPMPDIVITDPARPGMDSALI 469 Query: 375 QIIK-LEPIRIVYVSCNPATLARDSEALLKAG-------YTIARLAMLDMFPHTGHLESM 426 I++ + RIVYVSCNPAT ARD L Y + + +DMFPHT H+ES+ Sbjct: 470 AILRTIGARRIVYVSCNPATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESV 529 Query: 427 VLFSRV 432 + R Sbjct: 530 AVLERK 535 >UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE25_KOSOT Length = 440 Score = 357 bits (917), Expect = 5e-97, Method: Composition-based stats. Identities = 118/441 (26%), Positives = 183/441 (41%), Gaps = 33/441 (7%) Query: 20 SVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 +V L S G AR GK + + LP E E + K+ K VR + SP+R+ Sbjct: 5 TVEKLISDGYSFARDENGKVVLLTEGLPGETVEAVKLKGKESVEFWKTVRVVQSSPDRKI 64 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVIADVPWGYRRR 130 C F CGGC Q K + + D + + YR R Sbjct: 65 KGCKGFPDCGGCDWGGLQYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNR 124 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-- 188 K +++ G K S+++VDV+ C + + L + Sbjct: 125 MEYVAYQ--KGKKIGFGMYKRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNR 182 Query: 189 ------LGHVELVQATSGTLMILRHTAPLSSADREKL-----ERFSHSEGLDLYLAPDSE 237 L H+ L +G ++ L T S + +K+ E+ L + Sbjct: 183 ESKRGFLKHLVLRGNRNGDIVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDD 242 Query: 238 IL-----ETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 ++ + GE ++ G P F Q N V ++++ + L+ P + L Sbjct: 243 VVLRGPYRVIYGEGIITETLGDAVFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFL 302 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 DL+ G+G F A VV VEG+ NAR+N + N+ + + + + K Sbjct: 303 DLYSGIGTFAFYFARMFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDFLEK-- 360 Query: 352 WAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 + FDKV+LDP RAG ++ I K P RIVY+SCNP TLARDS L G+++ L Sbjct: 361 -NEEKFDKVILDPPRAGIGKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKAL 419 Query: 412 AMLDMFPHTGHLESMVLFSRV 432 DMFP T H+E + +F+RV Sbjct: 420 RAFDMFPDTHHVEVVAIFNRV 440 >UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Roseiflexus RepID=A7NGT5_ROSCS Length = 439 Score = 357 bits (916), Expect = 5e-97, Method: Composition-based stats. Identities = 124/432 (28%), Positives = 190/432 (43%), Gaps = 24/432 (5%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 +T + ++++ + G+ V R + +F G +P E V + E + YAR V+ L Sbjct: 15 STWPDTLELTLDGIAQGGEAVGRWQNRVVFAAGGIPGERVVVRLRERHESYARGDVIDVL 74 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV--------IAD 122 SP+R PR P QH + D QQR + LA + A Sbjct: 75 LASPDRVAPRLPGASH---MPWQHIAFDAQQRLRRQILADQLAKFAGVDPAVVEATAFAS 131 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 PW YR RL + ++G+ ++ + I ++ P+L P L L +R+ L Sbjct: 132 KPWEYRNNTRLHCDGR------RIGYYESNTRSIAELDHDPLLHPVLNEALAALRSALAD 185 Query: 183 L--QAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 A + + +A + LR S R G+ ++ P +L Sbjct: 186 ELDDAPPLEVTLRVSEAYGYCIAALRGRGDRRSLAARWRARCPVLAGV-VFTVPPPHMLP 244 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 + + + L P F QVN ++ L + R+LDL+CG G F Sbjct: 245 PLGADTLVEELADLTFLLRPTTFFQVNVAAAATLLNLIRAGLGDEARGRLLDLYCGAGAF 304 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV 360 TLPLA A +VGVE V +++A +N + NV F + E + FD V Sbjct: 305 TLPLARNAIEIVGVEEYAGAVADAERSAAVNHISNVRFITGSAEAVLANL---DGPFDAV 361 Query: 361 LLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 419 +LDP R G V+ +I+ P RIVYVSC+PATLARD + L+ GY + R +D+FP Sbjct: 362 VLDPPRRGCHPRVLHALIERAPRRIVYVSCHPATLARDLKTLIAGGYAVVRATPVDLFPQ 421 Query: 420 TGHLESMVLFSR 431 T H+ES+V R Sbjct: 422 TPHIESVVALMR 433 >UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01U84_SOLUE Length = 389 Score = 356 bits (915), Expect = 7e-97, Method: Composition-based stats. Identities = 128/417 (30%), Positives = 204/417 (48%), Gaps = 38/417 (9%) Query: 22 NDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRC 81 L G G+ R G+ +F P +LP E ++K RA+++ L+ +P+R + C Sbjct: 2 EKLVYGGDGLGRLEGRVVFAPFVLPGERIRAQAEKEKPGMVRARMLEVLAAAPDRVSAPC 61 Query: 82 PHFGVCGGCQQQHASVDLQQRSKSAAL----ARLMKHDVSE---VIADVPWGYRRRARLS 134 P FG CGGC QHA + Q +K A L RL K + E V++ P+GYR R +L Sbjct: 62 PVFGRCGGCHYQHAPYEYQLATKQAILAEEMRRLGKIEPPEEIAVVSSEPFGYRNRVQLH 121 Query: 135 LNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVEL 194 + ++ ++G+R+A S + V QCP+ +P++EA + + + R + +E+ Sbjct: 122 V------EESRIGYREARSHKLCAVGQCPVGSPKIEAAIRALNEMARDSRWPRFMKSIEV 175 Query: 195 VQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGL 254 + + + T +R RF G +I V G + + Sbjct: 176 FSDENQVQLNVLET------ERPVARRFFDWCG--------EKIPGMVEGALDYEG---- 217 Query: 255 RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV 314 R S F QVN + ++V A+E + D LDL+ G+G +LPLA + V V Sbjct: 218 RFRVSSNSFFQVNRFLIDRLVEVAIEGAEG---DTALDLYAGVGLLSLPLARKFREVTAV 274 Query: 315 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VM 373 E V Q NA NGL NV + EE + A D V+LDP R G V+ Sbjct: 275 ESGAGAVRDLQFNAERNGLANVRALPKTAEEYLLALEAA---PDLVVLDPPRTGLGKTVV 331 Query: 374 QQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 +++ +L P ++ V+C+PATLARD L+ AGY + ++ ++D+FP T HLE++V + Sbjct: 332 KRLSELRPRQVTIVACDPATLARDLAGLVAAGYRVEKMTLVDLFPQTYHLETVVRLT 388 >UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chloroflexus RepID=A9WK13_CHLAA Length = 416 Score = 356 bits (915), Expect = 8e-97, Method: Composition-based stats. Identities = 122/428 (28%), Positives = 185/428 (43%), Gaps = 29/428 (6%) Query: 14 RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 I + + + G GV RH +F+ G LP E T+TE ++ RA V L + Sbjct: 2 HDTIELEIEGIAQGGDGVGRHGDLVVFVTGALPGERVRATITERHTRFLRATVCDILRAA 61 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI--------ADVPW 125 PER P+ QH + Q R K +A ++ + ++ A PW Sbjct: 62 PERVEPQIKPGDH---APWQHIAYPAQVRYKGIIVADQLRKFLPDITIPIQPVIAAPHPW 118 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 GYR ARL + +G+ AG+ +VD+ P+L P L L +R Sbjct: 119 GYRNSARLHV------DGATLGYHAAGTKTVVDLADDPLLLPALRDTLRSLRRLA----F 168 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHS--EGLDLYLAPDSEILETVS 243 + V L + + R +P A+R L R + + + E V Sbjct: 169 AGLIKEVTLRASATYGYAAAR-LSPTPDAERHALWRLATAWKASTPVLAGVTLEDEPFVG 227 Query: 244 GEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLP 303 + + G+ S F QVN ++MVA + L R+LD + G+G+F LP Sbjct: 228 TPFVYDELAGVIFRLSLGSFFQVNHAQAERMVAVVRDALAPHGG-RLLDAYSGVGSFALP 286 Query: 304 LATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 LA V+ VE VE G+Q+A N + NV F + E V F V+LD Sbjct: 287 LARCYDEVIAVEAYQPAVEDGRQSAIDNQITNVQFINGAAEHTVAHLS---GPFHAVILD 343 Query: 364 PARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 P R G +++ II P +IVY+SC+P + RD LL AGY I + +D+FP T H Sbjct: 344 PPRRGCHPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQTPH 403 Query: 423 LESMVLFS 430 +E+++ Sbjct: 404 IETIIHLR 411 >UniRef50_C1F225 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F225_ACIC5 Length = 427 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 131/438 (29%), Positives = 190/438 (43%), Gaps = 37/438 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + V + G G+ARH GK +F+ LP E E + DK Y+ A+V L S ER Sbjct: 1 MKVRIEKAIYGGAGLARHEGKAVFVERSLPGELVEAEIVTDKASYSEARVTEVLEPSAER 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIADVPWGYRRR 130 CP++G CGGCQ QHAS D Q R K+A L ++ +VIA PWGYR R Sbjct: 61 VAAPCPYYGACGGCQYQHASEDEQLRMKAAILQETLERARLKDLPEIQVIAGEPWGYRNR 120 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 RL + +T+ +G+R+ S + V++C I AP L + + + Sbjct: 121 IRLHV----ETKPFALGYRREQSHVTLPVEECRIAAPALVRAMQVLVEQCEA-ALAGWAR 175 Query: 191 HVELVQATSGTLMILRH---------TAPLSSADREKLERFSHSEGLDLYLAPDS----E 237 VEL + L+++ L + + G + P Sbjct: 176 EVELFTDDATELLLISVYADAATAKMQERLDALWERLQGALPEAAGCAAFALPAGKGFAR 235 Query: 238 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM 297 + T G Y + GL+ S F QVN + +MVA E + DL+ G+ Sbjct: 236 RVATAGGPSLTYGAGGLQYRVSAGAFFQVNRFLVDRMVAAVCE---ARAGATAWDLYAGV 292 Query: 298 GNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA---- 353 G F L + V VE P V + NA + + K Sbjct: 293 GLFAKALVPRFEHVTAVEAAPESVADLRVNA-----PGARVVAATTLDFLRKAAQEAGKR 347 Query: 354 KNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 K D V+ DP RAG + ++ K+ P I YVSC+PATL+RD ALL++GY L Sbjct: 348 KAAPDLVVADPPRAGLGKDVTALLGKIRPRHITYVSCDPATLSRDLFALLQSGYRFRSLH 407 Query: 413 MLDMFPHTGHLESMVLFS 430 +LDMFP T H+E++ + Sbjct: 408 LLDMFPQTFHVETIAQLT 425 >UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y1544_PARUW Length = 442 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 95/439 (21%), Positives = 175/439 (39%), Gaps = 50/439 (11%) Query: 41 IPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQ 100 +P +P + + + K +++ + S R C HFG CGGC Q +LQ Sbjct: 3 VPFTIPGDQVNAILYKKTKDKYLSRLSKVTMPSNNRIDALCMHFGSCGGCCWQQLPYELQ 62 Query: 101 QRSKSAALARLMKHDVSE------VIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS 154 + K ++ L K ++E +I PW YR + L+ + K + +G G+ Sbjct: 63 LKQKEKSIQNLFKPYLNENVKWHSIIPSSPWHYRNKMELTFS-SDKAGRRYLGLIMQGTR 121 Query: 155 DIV-DVKQCPILAPQLEALLPKVRAC-----LGSLQAMRHLGHVELVQATSGT------L 202 V +K+C + ++ + + A++ G + + G + Sbjct: 122 GHVFQMKECLLANGWFAQAARAIQKWWDNSDVQAYHAIKDRGSLRTLTLREGLRTGDRLV 181 Query: 203 MILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILET-------------------VS 243 M+ P + + +L+ F + L+ + L + Sbjct: 182 MLTVSGNPDYALTKSQLQSFVQVLRDSIELSNSDQKLSVFLRIQQIAKGRPTNFYEMLLY 241 Query: 244 GEMPWYDS----------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 G + L SP F Q N +K+ ++AL+ D+ V DL Sbjct: 242 GPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQALKLADLSASHVVYDL 301 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 +CG G + A V+G+E V ++N + NGL NVT ++ + + Sbjct: 302 YCGTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVTIKSGDVGQVLEALSQE 361 Query: 354 KN-GFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 + D V++DP R G ++ I+ L+ ++VY+SCNP T + L+ GY + + Sbjct: 362 NSLKPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYISCNPKTQVMNLGPLIDGGYQLQIV 421 Query: 412 AMLDMFPHTGHLESMVLFS 430 +D FP T H+E++ L + Sbjct: 422 QPVDQFPQTVHVENITLLT 440 >UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusobacteriaceae RepID=D1AXU5_STRM9 Length = 466 Score = 354 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 100/465 (21%), Positives = 183/465 (39%), Gaps = 42/465 (9%) Query: 11 TTTRQIITVSVNDLDSFG--QGVARHNGKTLFI-PGLLPQENAEVTVTEDKKQYARAKVV 67 I+ + + +D G +++ + F ++P + + + + K + + Sbjct: 1 MKKGDIVNLDIVGIDFPAKPYGYLKNDDRKCFANTNVVPGQKIKARIGKIKNNKIELRDI 60 Query: 68 RRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK--------HDVSEV 119 + +S P C F CGGC Q+ S + Q K+ + +L+ + V Sbjct: 61 VIIENSENVAKPFCEKFNSCGGCSFQYLSYEKQAELKANLVYKLIDNSIKNKNYEKLPIV 120 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRA 178 YR + S K + +G K S DIV+V +C ++ ++ Sbjct: 121 TMGNDKEYRNKMEFSFGNEYKDGPIILGLHKKNSFHDIVNVNECRLMDENFRKIVRFTND 180 Query: 179 C-----LGSLQAMRHLGHVELVQATSGTL-----MILRHTAPLSSAD-----REKLERFS 223 + + H+G + + G + + T+ + + D +EKL Sbjct: 181 FFSKKDISFYHRLTHIGFLRNLVIRKGEKTKELGVNIVTTSQIENYDIIDEYKEKLLCLD 240 Query: 224 HSEGLDLYLA---------PDSEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQK 273 S GL + ++ + G+ + L SP F Q N+ +K Sbjct: 241 LSMGLKSIIHTINDNKSDSVRADKEIILYGKRDITERLFDLSFNVSPYSFFQTNSFGVEK 300 Query: 274 MVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR 329 + + L + V DLF G G ++ + V G+E + V K +NA Sbjct: 301 LYQEVINNLLFITKNDEKPIVFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENAI 360 Query: 330 LNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVS 388 NG+ N F ++ E + + D ++LDP R+G + ++++ I+YVS Sbjct: 361 KNGITNAKFIAGDVFEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYVS 420 Query: 389 CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 CNP TLA D + Y + R+ +DMF +T H+E +VL RVK Sbjct: 421 CNPKTLAEDLKIFEYNSYILKRVVCVDMFGYTPHVECIVLIQRVK 465 >UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E3 Length = 454 Score = 354 bits (908), Expect = 5e-96, Method: Composition-based stats. Identities = 111/447 (24%), Positives = 191/447 (42%), Gaps = 28/447 (6%) Query: 12 TTRQIITVSVNDLDSFGQGVARHNGKT-LFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 I ++ ++ +GV + ++P + EV + + +K A++ R + Sbjct: 3 KKNDIAVGVISKINVKNKGVIYLDDAAKAYVPDAYEGQEVEVRLLKKRKGNWEARLERVI 62 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPW-GYRR 129 + +C FG CGGC Q+ + Q K + +++ +V+E++ W YR Sbjct: 63 KNPSYYIAAKCKFFGACGGCALQNLPYEKQLERKLRWVNQILNFEVAEILGSPKWFQYRN 122 Query: 130 RARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRACL-----GSL 183 + + K L +G K + DIV V C I+ A+L Sbjct: 123 KMEYTFGDTVKDGPLALGLHKKRTTFDIVTVDDCKIVDDGFNAILRATLXFFAVXNXPYY 182 Query: 184 QAMRHLGHVEL----VQATSGTLMILRHTAPLSSADRE-----------KLERFSHSEGL 228 + + H G ++ T+G ++ T+ + D K+ H+ Sbjct: 183 KKVSHQGFLKFLVVRRSETTGXFLVNIVTSSQIAYDFTAFVEAIKNTGFKIAGVLHTISD 242 Query: 229 DLYLAPDSEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 A + +E + G Y+ GL+ SP F Q N + + A AL L + Sbjct: 243 SPSDAIKPDSVELLYGLNYIYEEILGLKFKISPFSFFQTNTKGAEVLYANALALLSDLED 302 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 V DL+ G G +A +A VVG+E V V ++NA+LNGL+N F ++ + Sbjct: 303 KTVFDLYSGTGTIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENCEFIAGDV---L 359 Query: 348 TKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGY 406 T+ A G D +++DP R G +++II I+Y+SC +LARD A + GY Sbjct: 360 TQIDNADVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLARDLVAFAEGGY 419 Query: 407 TIARLAMLDMFPHTGHLESMVLFSRVK 433 +A+ +DMF T H+E++VL R Sbjct: 420 HVAQSLCVDMFAQTYHVETVVLLKRTN 446 >UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavobacteriales RepID=A4C0T4_9FLAO Length = 485 Score = 353 bits (907), Expect = 6e-96, Method: Composition-based stats. Identities = 116/488 (23%), Positives = 205/488 (42%), Gaps = 60/488 (12%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNG----KTLFIPGLLPQENAEVTVTE 56 M++ + Q++ + + D G+G+AR + +F+P LP + + +++ Sbjct: 1 MSR-RERNQFVKKNQVLELKIEDYAFGGKGIARIHSEEGSFVIFVPNTLPGQLVKAQISK 59 Query: 57 DKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-- 114 K+YA AK++ L S + + G ++LQ + K + L K Sbjct: 60 SSKKYAEAKLIDVLEASQDEIQVP---YQDIPGAPYIQLPIELQHKYKKESTLSLFKKIG 116 Query: 115 --------DVSEVIADVPWGYRRRARLSLNYLP-------KTQQLQMGFRKAGSSDIVDV 159 V + + YR + + + + +GF++ G + D Sbjct: 117 KVENIDALFDEFVTSPNVFHYRNKMEYGFSAIGYDRITKRDKDEFTLGFKRRGVWWMGDD 176 Query: 160 --KQCPILAPQLEALLPKVRAC-----LGSLQAMRHLGHVELVQAT----SGTLMILRHT 208 K + Q+E L ++ L + G + L+ T Sbjct: 177 LNKDSGLFDKQMEDHLKNIKQYCIETGLDPWHGPKREGFFRYFVVRKSFKTDELLCNLVT 236 Query: 209 A--PLSSADREKLERFS---------------HSEGLDLYLAPDSEILETVSGEMPWYDS 251 L D K F + E D +A + + Sbjct: 237 TSPELEKFDLNKFADFLKDIFGKRLAGLLHTINDETGDRTIATSGSLNLVYGKDKIVEQL 296 Query: 252 NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR----VLDLFCGMGNFTLPLATQ 307 GL S + F Q N +K+ + +E++ V+DLFCG G +A++ Sbjct: 297 LGLDFEISMKSFFQTNPKCAEKLYNKVVEYVLEDKTKVDNTVVMDLFCGTGTIGQIVASK 356 Query: 308 AA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 + ++GV+ V + +E ++NA+ N + V F+ ++ + +T P +N ++LDPA Sbjct: 357 SKNAQIIGVDIVASAIEDAEKNAKRNNITGVQFFAADVGKFLTSHPEYENKIKTIILDPA 416 Query: 366 RAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 RAG A +Q+II L R+VYVSCNPAT ARD+E L AGY I +++++D FPHT H+E Sbjct: 417 RAGIAPKTLQKIINLNADRMVYVSCNPATQARDTELLGAAGYVIKKMSLVDQFPHTAHIE 476 Query: 425 SMVLFSRV 432 ++VLF +V Sbjct: 477 TVVLFEKV 484 >UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzyme n=4 Tax=Leuconostocaceae RepID=Q03Z05_LEUMM Length = 463 Score = 353 bits (906), Expect = 8e-96, Method: Composition-based stats. Identities = 108/452 (23%), Positives = 188/452 (41%), Gaps = 32/452 (7%) Query: 10 RTTTRQIITVSVNDLDSFGQGVARHNGK-TLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 Q + V V+D+ G G+ K L++ LP E + VT+ K AKV+ Sbjct: 13 PVKLNQELIVVVDDIRIDGMGIVYVTAKYPLYVADALPGEKVHLLVTQVDKFSGYAKVLD 72 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV------IAD 122 L S +R+ + G + + Q K A + RL + +V D Sbjct: 73 WLESSDKRQNSDRQYLIDAGTAPLVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMD 132 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P YR + + + + + L GF K G+ D+V + + +++ + VR L Sbjct: 133 NPTYYRNKTIVPVKW--QNDHLTSGFYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEK 190 Query: 183 LQAMR-----HLGHVELVQATSG----TLMILRHTAPLSSADREKL-----ERFSHSEGL 228 G + + G LM++ + + ++ + + + L Sbjct: 191 YDITAFDPDLERGAIRYIMIRRGYYSHELMVVLVSNEEVISHETEIIADIRNQLTELKSL 250 Query: 229 DLYLAPDSEIL------ETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEW 281 L +P + + + GE YD G P F QVN + + A + Sbjct: 251 ILNYSPKKDYVLLSPNNRILWGEKAIYDTLLGYEFIIGPNSFYQVNPQTTEVLYDLAAQK 310 Query: 282 LDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 D++P D V+D + G+G + +A++ V+GVE VP V Q N ++N + N + Sbjct: 311 ADLKPTDTVIDAYSGIGTIGISVASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILA 370 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + K D V +DP R G ++ + P +IVY+SCNP TL+RD+ Sbjct: 371 DAPVQFKKWQEQGLKPDVVFVDPPRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVE 430 Query: 401 LLKAGYTIA-RLAMLDMFPHTGHLESMVLFSR 431 +++ GY I + +D FP T H+ES+ +F + Sbjct: 431 IIENGYHIDGSVLPVDQFPQTSHVESITVFRK 462 >UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MLF0_9CHLO Length = 549 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 119/507 (23%), Positives = 192/507 (37%), Gaps = 78/507 (15%) Query: 4 FYSAKRRTTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKK--Q 60 F + + + + V + G+GV + G + +P E +T KK + Sbjct: 33 FRAPQEPVVIGEEVDVECTAVAFGGRGVCKFPGGFVILCERAVPGEKVHARITAIKKGGR 92 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------ 114 YA A ++RL +P CPHF CGGC + D Q K + +M Sbjct: 93 YAEAVKIQRLRPTPYHVNAPCPHFDRCGGCTWLDVAYDQQLAFKRDQVVDVMTRIARIND 152 Query: 115 --DVSEVIADVP--WGYRRRARLSLNYLPKT--QQLQMGFRKAGSS-DIVDV--KQCPIL 165 + I+ YR + + + + G R AG +V+V C + Sbjct: 153 ADRIVNAISPSQQRLRYRNKMEFAFAQVGDNSSGRPAFGLRPAGDHTGLVEVFTSGCVLQ 212 Query: 166 APQLEAL----------LPKVRACLGSLQAMRHLGHVELVQATS---------GTLMILR 206 + + + V A L G + + + T +++ Sbjct: 213 QVVADKVLARCAAHLHAMADVSALLPVFNRRTGCGVLRSLTLRTAPLAGRCSGETAVMVI 272 Query: 207 HTAPLSSADREK-------------LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG 253 A L +E ++ + +++I G Sbjct: 273 IAAALDRQGKETKKAFAALAADLATIDCVQSVVHERVGDNNENQITVLHGPATISITLRG 332 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAASV 311 + S + F Q N + +V E + E + +LDLFCG+G F L LA++A V Sbjct: 333 VVFALSVKSFFQTNTKQAEILVESVEEACALTGENTETILDLFCGVGTFGLCLASKARHV 392 Query: 312 VGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG--------------F 357 G E VP VE ++NA N ++N TF+ +L + A + Sbjct: 393 YGCEIVPEAVEDAKRNAVANRIENATFWQADLAQLSESMLCADSKSMSKSIVFGKDVVRP 452 Query: 358 DKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLK-----------AG 405 D V++DPAR+G + I++ L RIVYVSCNPAT ARD L A Sbjct: 453 DVVIVDPARSGMDVTLVAILRSLGIPRIVYVSCNPATQARDVALLCDVSDNTQSGDLLAK 512 Query: 406 YTIARLAMLDMFPHTGHLESMVLFSRV 432 Y + +D+FPHT H+E++V+ RV Sbjct: 513 YRLISCIPVDLFPHTPHVENIVVLERV 539 >UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNG0_9FIRM Length = 436 Score = 350 bits (898), Expect = 7e-95, Method: Composition-based stats. Identities = 102/442 (23%), Positives = 183/442 (41%), Gaps = 32/442 (7%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + + G+G+A K +F+PG P E E T++E K YA AK+ R L + R Sbjct: 1 MKLEIKKIGINGEGIAYDQKKPVFVPGTFPGEVVEATISEKKAHYAHAKINRILQKAHYR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS--------EVIADVPWGYR 128 P G + Q K L + ++ + YR Sbjct: 61 RPSPSPIEEQLGH-PFFGIEYEKQLTFKLDLLTEALWKYAKVKRHWVRKINPSENEFSYR 119 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 + +L + + +L G S+ V P++E + ++ A L + Sbjct: 120 NQCKLPI--QERQGKLVCGLFSPNSNQFQVVHHFLTHDPEVERIRKELLAILNQHHFPAY 177 Query: 189 -------LGHVELVQATSGTLMILRHTAP-LSSADREKLERFSHSEGLDLYLAPD----- 235 L ++ + + L L+ + ++ H L Sbjct: 178 SHKTKQGLRYIVIRCIHGISQATLITGKDTLNKCLIDDFKKIPHLHSLHQSWNTSKQSLQ 237 Query: 236 --SEILETVSGE-MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLD 292 E + + G+ + + L SP F Q+N + + A+ + P +++ Sbjct: 238 FFGERTKLLFGKKHLLIPFSSIYLHVSPEAFFQLNTKQAEALYHYAVSKV--DPCHILVE 295 Query: 293 LFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 +CG+G +L +++A V G+E P ++ ++NA LN L N F + + + K Sbjct: 296 AYCGIGVMSLLASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIAK 355 Query: 353 AKNGFDKVLLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARL 411 K D +L+DP R+G ++ I+K +P RI+Y+SCNPATLA++ L K Y I + Sbjct: 356 -KQKIDTLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAKNIAVL-KWKYQILTI 413 Query: 412 AMLDMFPHTGHLESMVLFSRVK 433 D+FP T H+E + L S+V+ Sbjct: 414 QAFDLFPQTPHVECLCLLSKVQ 435 >UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusobacteriaceae RepID=C7NBA6_LEPBD Length = 474 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 101/471 (21%), Positives = 191/471 (40%), Gaps = 47/471 (9%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 K Q + + + + G+G+ R +G +F+P +P + EV + KK YAR Sbjct: 3 KIKNNYEVGQKLEIEIEKIVFGGEGLGRVDGFAVFVPMSVPGDKLEVKIISVKKSYARGL 62 Query: 66 VVRRLSDSPERETPRCPH-FGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI---- 120 + R + S +R F GC + Q K L ++ + Sbjct: 63 ITRIIEPSKDRIEDLSKISFEDFDGCDFGMLKYEKQLEYKDKMLEEVLTKIAEIDLKKVK 122 Query: 121 ------ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLP 174 +D YR + K +Q GF S ++ K+ + + + ++ Sbjct: 123 ISKIIGSDKKINYRNKTAEPF--FKKNGIIQTGFYSRKSHNVFSAKESLLKSEIAKIIID 180 Query: 175 KVRACLGSLQAMRH-------------LGHVELVQATSGTLMILRHTAPLSSADR--EKL 219 K + S + L + + +MI+ S ++ + L Sbjct: 181 KFLQKVNSFAGTKKEFKVFNEVNNTGFLKQIMIRNNEKDEVMIVVVVNKNSQYNQLSKVL 240 Query: 220 ERF--SHSEGLDLYLAPDSEILETVSG--------EMPWYDSNGLRLTFSPRDFIQVNAG 269 E + +Y++ +E + G + + GL+ P F Q+N Sbjct: 241 EEMYDENDCIKSIYISVKTEQNNVILGKNVHLFGSQYLEEEMEGLKFKIYPNSFFQINKK 300 Query: 270 VNQKMVARALEWLDVQP-------EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322 K+ A+ +L+ + E V+D F G G + L+ V+G+E + + Sbjct: 301 QALKLYDAAINFLNEENKNIDKIYEKTVIDAFSGTGTIAMMLSKNIKKVIGIESIESSTL 360 Query: 323 KGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEP 381 + + N +QNV F + +E+++ K ++ ++ DP R G ++ ++K + Sbjct: 361 AAKLTSYENSIQNVEFVNGKVEKELPKILKREDVG-AIVFDPPRRGIEESALKSVVKNKI 419 Query: 382 IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 +IVY+SCNPAT ARD + L + GY + ++A +DMFP TGH+E + + R+ Sbjct: 420 EKIVYISCNPATFARDVKILAENGYVLRKVAPVDMFPQTGHIEVVGMIQRI 470 >UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UYU1_9AQUI Length = 408 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 106/425 (24%), Positives = 197/425 (46%), Gaps = 26/425 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + VS+ + G+G++R K F+P LP+E EV + E+KK V L +P R Sbjct: 1 MKVSIEKVVFGGKGLSRLKEKVCFVPFTLPEEVVEVEIKEEKKSICEGFPVDVLEKNPYR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSE-------VIADVPWGYRR 129 P+C ++ CGGC QH + + Q K L ++ + + P+ YR Sbjct: 61 VEPKCKYYMQCGGCDFQHINYEKQVEIKKEILEETLQRIGKINKDTDKVIPSANPFNYRN 120 Query: 130 RARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHL 189 R + GF K S+++VD++ C I + L+P ++ L Sbjct: 121 RVQFKF------DGKNFGFYKLKSNEVVDIESCDIADKNINNLIPTLKN-LAKNNPQVEE 173 Query: 190 GHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWY 249 H+ + ++ + L L+ F+ G+ +Y+ ++ ++ +Y Sbjct: 174 LHI-FHHPDNKPMLKIVLKENLFMNIENLLDTFA---GIGVYI--GNKRVKLEGKSFTFY 227 Query: 250 DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 + S F QVN + +V + + + + D++CG+G FTLP + +A Sbjct: 228 RAGKFNYRVSIDSFFQVNKYQLENIVDEVISEI-PKDSQCIGDIYCGVGLFTLPASKKAK 286 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 V G+E + V+ Q N +++ + N FY + +E+ D ++ DP R G Sbjct: 287 KVFGIEASKSAVKDAQYNVKVHNIGNAKFYQKVVEKSAD--IIFGYNPDTLIFDPPRTGI 344 Query: 370 AG-VMQQIIKLEP-IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 ++Q++++L+ RI+YVSCNP+T +RD L + + + ++ ++DMFP T H+ES+ Sbjct: 345 PKNIIQKLLQLKSLKRIIYVSCNPSTASRDINLLSEK-FELKKVKLIDMFPQTHHIESIF 403 Query: 428 LFSRV 432 + +V Sbjct: 404 VLDKV 408 >UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepID=C4Z8C9_EUBR3 Length = 418 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 100/405 (24%), Positives = 182/405 (44%), Gaps = 32/405 (7%) Query: 55 TEDKKQYARA----KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALAR 110 T ++K+Y +A ++ S + CP+ CGGC Q Q ++K A + + Sbjct: 13 TRNEKKYKKANGQPRLKE--KSSRAKSDNVCPYAKKCGGCDYQGVEYKEQLKTKQAYMKK 70 Query: 111 LMKHD---VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAP 167 L+K V P YR + + + + Q+ G + + D+VD++ C I Sbjct: 71 LLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRR-GQIVAGAYRKNTHDVVDIESCMIEEQ 129 Query: 168 QLEALLPKVRACLGSLQAMRH--------LGHVELVQA-TSGTLMILRHTA-PLSSADRE 217 + + ++ ++ L S + + L HV + + +G +M++ A P+ + Sbjct: 130 ESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYATGQIMVVLVLASPILPSKNN 189 Query: 218 KLERF--SHSEGLDLYLAPDSEILE--------TVSGEMPWYDS-NGLRLTFSPRDFIQV 266 ++ H + L + + T+ G+ D G SP F QV Sbjct: 190 FVKALRKKHPNITTVVLNVNDKKTSMVLGDRNITLYGKGFIEDKLCGCTFRISPGSFYQV 249 Query: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 N + + +A+ + ++R++D +CG G + A A V+GVE + Sbjct: 250 NPVQTELLYEKAIHEAHLTGKERIIDAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVI 309 Query: 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIV 385 NA+ N ++N+ FY+++ + + + D V++DP R G+ + ++KL P R+V Sbjct: 310 NAKRNDIRNIRFYNDDAGKFMVEMAQKGEKADVVIMDPPRTGSDEAFLSSVVKLSPERVV 369 Query: 386 YVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 YVSC P TLARD + L K GYT+ R D FP T H+E++ + Sbjct: 370 YVSCGPETLARDLKYLTKHGYTVKRATPYDCFPFTSHIETVCCLT 414 >UniRef50_Q1D5V4 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Cystobacterineae RepID=Q1D5V4_MYXXD Length = 431 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 132/430 (30%), Positives = 201/430 (46%), Gaps = 22/430 (5%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 I +++ L G+GVA G+T+FIPG P + V + E + + R + + +S P+ Sbjct: 8 PIELTIERLGQLGEGVASWQGRTVFIPGTFPGDTVRVHL-ETQGRVLRGILRQVVSPGPD 66 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV----------SEVIADVPW 125 R C + CGGC + Q+ +K + ++H ++A W Sbjct: 67 RRDAPCVYASDCGGCDWLALAEPAQRSAKQEIVLSTLEHLGHLARDSFTVRPLLVAPRDW 126 Query: 126 GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA 185 GYRRRA L + +G+ S + V V+ C L P L AL K+ L L Sbjct: 127 GYRRRAVLHPA-----GKGALGYFGRRSHERVPVEVCGALTPVLTALPGKLAPLLKPLAK 181 Query: 186 MRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGE 245 V L+ + + P+++ E E + L+ + E + G+ Sbjct: 182 DAE--EVLLLAEGDKAAFAVNLSGPVTARHLEAAEAAVRALRLEGAVLTPKEGSARLLGK 239 Query: 246 MPWYDSNGLR----LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 + LR L P F Q +A N +V A+ L + D VL+L+ G GNFT Sbjct: 240 PALRSYSPLRPEVPLYLRPDAFAQAHAEANVGLVTSAVYELGARESDTVLELYSGNGNFT 299 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 PLA AASV+GVE P VE Q++A G+ NV F + + + FD L Sbjct: 300 FPLAGTAASVLGVESSPVGVELAQRSAHEGGVTNVRFIQGDARKVCDGLVAEQRRFDVCL 359 Query: 362 LDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 DP RAGA G+ + + L R+VYV+C+PA+LARD+ L+ AGY L ++DMFP T Sbjct: 360 ADPPRAGAPGLAKWMTALGVRRVVYVACDPASLARDAAGLVAAGYKPLALQVVDMFPQTH 419 Query: 422 HLESMVLFSR 431 H+E+++ F R Sbjct: 420 HVEAVMSFER 429 >UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IVF7_ACIBL Length = 441 Score = 344 bits (883), Expect = 4e-93, Method: Composition-based stats. Identities = 117/452 (25%), Positives = 193/452 (42%), Gaps = 47/452 (10%) Query: 16 IITVSVNDLDSFGQGVARHNG------KTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 ++ + + L G G+AR + K +F+P + P E E + E K +ARA+ + Sbjct: 1 MVELKIEKLIYGGDGLARMHDAKLGRSKAVFLPFVAPGETVEAIIREQKPGFARAQAEKV 60 Query: 70 LSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI-------AD 122 L S R+TP CP+F CGGCQ QH Q ++K+ L + + A Sbjct: 61 LQPSEFRQTPPCPYFFKCGGCQYQHLQYAEQVKAKAQILEETLSRTAKLKLEQPIQTHAA 120 Query: 123 VPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS 182 P GYR R R+ ++++P Q +G+ + GS ++ V+QCPI +P + +L + A Sbjct: 121 EPLGYRNRTRMRVSHVP---QFAIGYYRFGSHSLLPVEQCPISSPLINRVLQGLWAAGRE 177 Query: 183 LQAMRHLGHVELVQATSGTLMIL---RHTAPLSSADREKLERF----SHSEGLDLY---- 231 + R + V+ + ++L A + +E G+ ++ Sbjct: 178 ERIAREVREVQFFANHDDSRLLLELYIDHHAEPDALQPMIETLRGKMPEIAGVAVFRGAP 237 Query: 232 -----------LAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALE 280 + Y + S F Q N + +M Sbjct: 238 ADDSEDQRAPLTRAKASPGVFFGERSLRYKTKRHEYQVSAGAFFQTNRFLLDEMAETV-- 295 Query: 281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 LDL+ G G F+LPLA Q V+ VE + NA L+NV Sbjct: 296 -TRGHSGKLALDLYSGGGFFSLPLADQFEKVIAVEASGHSQADLKTNA----LRNVKAVR 350 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSE 399 EE + + D V++DP RAG +I ++ R+ YVSC+PATL+RD + Sbjct: 351 SGTEEFLRGEGRQL-RPDLVVVDPPRAGLGEKTSHLIGRMSVGRVTYVSCDPATLSRDMK 409 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+++G+ + + + D+FP T HLES++ R Sbjct: 410 VLVESGFRVEEVHLFDLFPQTYHLESVLHLVR 441 >UniRef50_Q4PA00 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PA00_USTMA Length = 574 Score = 343 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 102/478 (21%), Positives = 179/478 (37%), Gaps = 65/478 (13%) Query: 8 KRRTTTRQIITVSVNDLDSFGQG--VARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + + +T+ + LD+ G G VA + +P LP E + +++ Y++AK Sbjct: 105 QLKFERGTRLTLHIERLDAHGDGLAVAPEQDWVIAVPHTLPGEKVTAEIVGNERLYSKAK 164 Query: 66 VVRRLSDSPERET--PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD-------- 115 +V+ L S R RC +FG CGGCQ Q Q K + + Sbjct: 165 LVQVLEKSATRNDELVRCKYFGDCGGCQYQMIDYAHQLEIKRGVVEKAFARFSGLDPSLI 224 Query: 116 ---VSEVIADVPWGYRRRARLSL---------------------------NYLPKTQQLQ 145 + + + + YR + ++ + Sbjct: 225 PRVLPTIASPNQYNYRTKLTPHFELPYELRRGRRSGVRNNASADGNGVEADHEKPKYSVP 284 Query: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMIL 205 +GF G+ ++D+++CPI + LP + + + G L++ + Sbjct: 285 IGFDCIGTKKVMDIEECPIATKTINKALPDAKQKVCNTIESFKNGATILLRDS------- 337 Query: 206 RHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQ 265 S + L + ++ D+E++ + F Q Sbjct: 338 --LRTYGSFAEDLLVTEERATDGQVHKELDTEVVTD-HKATVKERVLTTKFESPAGTFFQ 394 Query: 266 VNAGVNQKMVARALEWLDVQPEDR---------VLDLFCGMGNFTLPLATQAASVVGVEG 316 N + ++ E + ++D +CG G F+L LA+ V GVE Sbjct: 395 NNRSILPSLLDYVREAITSASSTTGEDSAQARYLVDAYCGSGLFSLCLASLFREVSGVEI 454 Query: 317 VPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQ 375 ++ +NA LNG+ N F N E+ K + + V++DP R G ++Q Sbjct: 455 SSESIKYATKNAELNGITNTKFLAGNAEDIFGKIEYPADK-TTVIIDPPRRGCDQEFIRQ 513 Query: 376 IIKLEPIRIVYVSCNPATLARDSEALL--KAGYTIARLAMLDMFPHTGHLESMVLFSR 431 ++ L P IVYVSCN T ARD L+ Y I + D+FP T H+E + + R Sbjct: 514 LVNLAPKHIVYVSCNVHTQARDVGQLISKDPRYKIKSVRGADLFPQTHHVEGVAVLER 571 >UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinella chromatophora RepID=B1X3H7_PAUCH Length = 448 Score = 343 bits (880), Expect = 9e-93, Method: Composition-based stats. Identities = 118/448 (26%), Positives = 199/448 (44%), Gaps = 32/448 (7%) Query: 11 TTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + + +SV DL G GVAR +F+ GLLP E + +T ++ ++ + Sbjct: 3 LRVGECLKISVFDLTIQGIGVARWQEHVIFVAGLLPGEIGFIQITHINQKVGIGVIINKN 62 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADV 123 S ER P C CGGC Q + Q K ++ + + +I + Sbjct: 63 VFSKERTQPICMLAKDCGGCSLQSINEQAQVAWKQHYVSETLNRLSGIEVKVLPLLITNE 122 Query: 124 PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSL 183 P YR +A + L + L+ GF + S IV++ CP+L P+++ L+ ++A L + Sbjct: 123 PIKYRNKALIPLEQTS-SGWLRAGFYRRASHQIVNMDNCPLLDPRIDTLVEPIKADLETS 181 Query: 184 QAM---RHLGHVELVQATSGTLMILRHTAPLSSADR---------EKLERFSHSEGLDLY 231 L + + G L +SS DR ++R+ G+ L Sbjct: 182 HWPIDIHSLNGIRHLCLKVGILTNEIIITLVSSHDRMPGISKLAQHWMQRWPQVVGVCLN 241 Query: 232 LAPD------SEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDV 284 L P+ +T++G + L L + F Q+N ++ V L+V Sbjct: 242 LQPNLDNVAIGSSTKTIAGRPWLIERFCNLNLRIASDTFFQINTLQAERAVNFLASILNV 301 Query: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 344 ++LD + G+G +LPLA A+V+G+E + V + NA+LN + + F H ++ Sbjct: 302 STGPKILDAYSGVGTLSLPLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVA 361 Query: 345 EDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403 E + D +++DP R G V++QII + VY+SCNP+TLARD L Sbjct: 362 EALALH---LPSSDALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTL 418 Query: 404 AG-YTIARLAMLDMFPHTGHLESMVLFS 430 AG + + +D FP T H+E + + Sbjct: 419 AGNIKVTFIQPIDFFPKTTHVECLTILE 446 >UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK1_ACHLI Length = 460 Score = 342 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 92/457 (20%), Positives = 171/457 (37%), Gaps = 37/457 (8%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + +I + + L G+G+ ++ +F+ LP E VTE A Sbjct: 1 MINEQIKINDLIEIEIKKLGINGEGIGYYHKLAVFVDNALPGEIITAKVTEIFPNRLLAD 60 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVI----- 120 + SP+R P + +CG QH + + + K L + V + I Sbjct: 61 IEEIKVKSPDRLEVMFPEYELCGAYSMQHVTYEKSLQIKRDILINALNRYVDKKIVYSKI 120 Query: 121 -----ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPK 175 + P GYR + L + L + G G ++ + V P+ P++ ++ Sbjct: 121 KQTIGMNEPLGYRNKVSLPVRKLEGKNKF--GLYAKGGNEFIPVNDTPVHQPRINEIIQI 178 Query: 176 VRACLGSLQAMRHLGH---------VELVQATSGTLMILRHTAPLSSAD----REKLERF 222 V + + ++ V T+G + + + + Sbjct: 179 VETLMDQHKFHAYIQKDKSGYMKSMVIRRSYTTGEVQVSFLLMKKFEGIAKFTEALVAQC 238 Query: 223 SHSEGLDLYLAPD--------SEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKM 274 + + + N + P F Q+N + K Sbjct: 239 PDIVSVFAFYTDKYKEQIFFTNNYENLFGKATINEKINHQTFSLYPEAFFQLNTVMADKF 298 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 + E ++QP D V+D + G + +A V +E V+ + + N ++ Sbjct: 299 YNKMRELANLQPTDVVIDAYAGSAPISHYIAKDVKKVYAIEIDQRSVQSAILSLKRNNIK 358 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPAT 393 NVT + ++ + + D + DP R G ++QI+K +P +++Y SCNP+T Sbjct: 359 NVTVIQSDFKKALKNL--EVDTIDAMFFDPPRTGLGYDTIKQILKYKPKKLIYGSCNPST 416 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 LA+D E LLK Y + L +DMFP+T +ES+ L Sbjct: 417 LAKDLEDLLK-TYELKSLIPMDMFPYTPLVESVSLLE 452 >UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaerococcus RepID=C7RHR1_ANAPD Length = 457 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 97/460 (21%), Positives = 187/460 (40%), Gaps = 40/460 (8%) Query: 11 TTTRQIITVSVNDLDSFGQGVAR-HNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRR 69 + I + + + +GK + G L + +V + K +AK++ Sbjct: 1 MRNKAIKEIKIEKMKYPNISQGYDEDGKLVEFKGGLLGQRVKVKAKKRNKDKIKAKLIET 60 Query: 70 LSDSPERE-TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIA 121 + S T C + +CGGC Q + + + K + L K D+ + Sbjct: 61 IEKSDLENSTNTCDNPDICGGCAYQKLAYETELMLKVDMIKNLFKDNSIDYSGDIKINQS 120 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIVDVKQCPILAPQLEALLPKVRACL 180 YR + + K L +G + +IVD C I+ + V+A Sbjct: 121 PKTKAYRNKMEYTFGDSKKGGDLVLGLHRQNRFYEIVDTTNCNIIDGDFNTIRESVQAYF 180 Query: 181 GS-----LQAMRHLGHVELV----QATSGTLMILRHTAPLSSADREKLERFSHS------ 225 G + + +G +M++ T S D ++ F + Sbjct: 181 REKKTDFYHKRTREGLLRHLIIRKAHRTGEIMVILVTTSDESFDSLRINLFLNKLLSIDL 240 Query: 226 --EGLDLYLAPDS--------EILETVSGEMPW-YDSNGLRLTFSPRDFIQVNAGVNQKM 274 + + +Y + E L + G+ + GL SP F Q N +K+ Sbjct: 241 VGKIVSVYHVINDSPADAVIVEKLNLIYGKEFIKEEMLGLTFNISPFSFFQPNIYTAEKL 300 Query: 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334 +A + ++ VLDL+ G G T +A +A + G+E V ++K +NA++N + Sbjct: 301 YQKAFDLANINQSMDVLDLYSGTGTITQVMAQRARTATGIEIVEEAIDKAWENAKINEID 360 Query: 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPAT 393 N+ F ++ + + + +D ++LDP RAG + +++I+K++ + +Y+SCNP T Sbjct: 361 NINFLCGDV---LEEIEKVGDKYDVIILDPPRAGISPKSLEKILKIDTEKFIYISCNPKT 417 Query: 394 LARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 + + + G+ I + D FP + HLE++ L +R K Sbjct: 418 QVENLKEFINQGFEIKDYEIYDQFPKSRHLEAIALLTRKK 457 >UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzyme n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNA0_MYCA5 Length = 449 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 101/445 (22%), Positives = 181/445 (40%), Gaps = 28/445 (6%) Query: 12 TTRQIITV-SVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 QI+ + G GV R NG +F+ LL E A++ + + ++A A++ + Sbjct: 5 KINQILKAQKATEFSYEGYGVIRENGYPIFVKNLLIGEVADIQIIKVTAKFAIAEIFNLI 64 Query: 71 SDSPERETPRC-PHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS----EVIADVPW 125 SP+R + F C S + Q K + L +++ + I P Sbjct: 65 ETSPKRIPIKNYELFRSCA-APLMILSYEDQLAFKQKIVNDLFLRELNFRNVKEITPSPL 123 Query: 126 --GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS- 182 YR + L ++ + +MGF S +V+ + ++ +L ++ Sbjct: 124 EINYRNK--LRVHVECQGTTFKMGFYVKNSHILVEQTSYDLAYKEIGNILEEIDFLCKKE 181 Query: 183 ------LQAMRHLGHVELVQAT-SGTLMILRHTAPLSSA----DREKLERFSHSEGLDLY 231 + + + + +G ++ + + + +E+F + + + Sbjct: 182 VLLEDNFIKKNKITSITVKYSEKTGESQVIFESLKQAPFPASFIKRLIEKFDNLNIVQIV 241 Query: 232 LAPDSEIL----ETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + + E Y + L+ S + F QVN KM L+ L++ Sbjct: 242 CNEEKTKILKLIVLAGKESIEYKIDKLKFNVSSQSFYQVNEKQTNKMYKTLLKSLNLTGS 301 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV 347 + ++D F G+G + LA +A VV VE G++NA+LN L N+ F E+ Sbjct: 302 EFIVDAFAGVGTIGMYLAKKAKQVVCVEISKKATLNGKENAKLNSLNNLEFISEDCNRFF 361 Query: 348 TKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGY 406 K+ + D ++ DP R G + II RI Y+SCNP TL RD + GY Sbjct: 362 DKECTRRQNIDVIVFDPPREGLNKTTINAIIPKSLKRIAYISCNPRTLVRDLKLFTSKGY 421 Query: 407 TIARLAMLDMFPHTGHLESMVLFSR 431 I + DMFP T H+E++ L S+ Sbjct: 422 KIEFVQPFDMFPQTYHVETLALLSK 446 >UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A8RH83_9CLOT Length = 553 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 162/376 (43%), Gaps = 26/376 (6%) Query: 81 CPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---HDVSEVIADVPWGYRRRARLSLNY 137 CP +CGGCQ Q K L+K + P+ YR + + Sbjct: 176 CPVLNLCGGCQLLDMEYAKQLAFKQKQAEELLKGLCPVKPIIGMKDPFHYRNKVHAVFDR 235 Query: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH--------L 189 K + G + + ++ V++C I + + ++ +R L S + + L Sbjct: 236 DKKGN-IISGIYEENTHHVIPVEKCLIENQKADEIIGTIRGMLKSFKIRTYDEDTGFGLL 294 Query: 190 GHVELVQA-TSGTLMILRHTAP-----LSSADREKLERFSHSEGLDLYLAPDS------E 237 HV + + ++G +M++ TA ++ + E+ + + + Sbjct: 295 RHVLIRKGFSTGEIMVVLVTASPVFPSKNNFVKALREKHPEITTIVQNINGRGTSMVLGD 354 Query: 238 ILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 + G+ D G R S + F QVN + + +AL + ++ V+D +CG Sbjct: 355 KEHVLYGKGYIVDELCGCRFRISSKSFYQVNPVQTEILYEKALSLAGLTGQELVVDAYCG 414 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +G + + A V+GVE V NA++NG++N+ FY + + Sbjct: 415 IGTIGIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMAEQGEK 474 Query: 357 FDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 D V++DP R+G+ M + KL ++VYVSCNP TLARD + K GY A ++D Sbjct: 475 ADVVIMDPPRSGSTEEFMDAVGKLGAEKVVYVSCNPETLARDVRYMKKMGYRAAEAWLVD 534 Query: 416 MFPHTGHLESMVLFSR 431 MFP T H ES+VL + Sbjct: 535 MFPGTVHTESIVLLQK 550 >UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SWR8_9FIRM Length = 495 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 176/379 (46%), Gaps = 26/379 (6%) Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVS---EVIADVPWGYRRRARLS 134 +CP +CGGCQ + Q K + L+ + + P+ YR + + Sbjct: 107 NSKCPISHLCGGCQYVDMPYEQQLAEKQKYIDDLLSVFGPVDKIIGMENPYHYRNKVTAA 166 Query: 135 LNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH------ 188 + K+ ++ G + G+ +I+ V+ C + + A++ + S + + Sbjct: 167 FRRM-KSGEIISGVYEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGT 225 Query: 189 --LGHVELVQAT-SGTLMILRHTAPLSSADREKLERF---SHSEGLDLYLAPD------- 235 + H+++ +G +M++ TA ++ L + +H E + + Sbjct: 226 GLIRHLQIRVGRKTGQIMVIIVTASPVFPSKKNLAKALVTAHPEITTVVQNINMKDTSMV 285 Query: 236 -SEILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDL 293 + + V G+ D G R SP F QVN + + +A+++ D++ ++ V+D Sbjct: 286 IGDRNQVVYGKGYIEDILCGKRFRISPGSFYQVNPEQTEVLYGKAIKYADLKKKETVIDA 345 Query: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 +CG+G + + +A V+GVE A V + N ++N +QNV Y + + Sbjct: 346 YCGIGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRFMVDVADE 405 Query: 354 KNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLA 412 + D V +DP R+G+ M +I L P R+VY+SC P +LARD + + K GY + R+ Sbjct: 406 GDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTKHGYQVIRMT 465 Query: 413 MLDMFPHTGHLESMVLFSR 431 +DMFP T +E++VL +R Sbjct: 466 PVDMFPLTRGVETVVLLTR 484 >UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaerococcus RepID=C7RGV6_ANAPD Length = 415 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 103/418 (24%), Positives = 198/418 (47%), Gaps = 28/418 (6%) Query: 27 FGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGV 86 G+GV + + K FI G E+ ++ + ++KK + A+ V+ S SP P CP++ Sbjct: 14 DGRGVGKKDSKVYFIEGATFGESCDIEIIKEKKNFIEARKVKTTSQSPYYTQPPCPYYYE 73 Query: 87 CGGCQQQHASVDLQQRSKSAALARLMKH------DVSEVIADVPWGYRRRARLSLNYLPK 140 CGGC + D Q + K + + +K D E+I YR + RL + Sbjct: 74 CGGCTIMDINYDEQIKLKKNLITKAIKKTCAIEIDDLEIITSETLSYRNKIRLQV----- 128 Query: 141 TQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGS--LQAMRHLGHVELVQAT 198 ++ ++ + K S+D+V++K C + + L K++ + + + + + + Sbjct: 129 DKKGRLSYNKKSSNDLVEIKDCLLANEHIIENLGKIQNLVTTIVKDLGNIIREISIRSNS 188 Query: 199 SGTLMILRHTAPLSSADREKLERFSHSEGLDL---YLAPDSEILETVSGEMPWYDSNGLR 255 L+ + S + EKL ++ DL + + ++T+ + + Sbjct: 189 CEILLNIY------SKEEEKLYKYLKENHKDLPYNINIINKKKIKTLGKDHLIFKVKDKS 242 Query: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 S DF QVN + + A ++L+ ++LDLFCG G ++ L ++VG+E Sbjct: 243 FKVSKDDFYQVNDYQIENLYQNARKYLE--KNKKLLDLFCGSGISSIAL--NDDNIVGIE 298 Query: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQ 374 + ++ ++NA++N L + F +N + ++ K V +DP RAG +++ Sbjct: 299 INKSAIKDAKENAKINNLTDYKFIDKNA-NYIDQKFIEKEKIQTVTVDPPRAGLDKEIIK 357 Query: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + K + I+Y+SCNP TLARD + + GY + + +DMFP T H+E++ L ++ Sbjct: 358 TLAKTKIKNIIYISCNPQTLARDIKRFMDRGYELKEIKAVDMFPQTMHVEAIALIQKM 415 >UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopobium RepID=C8WAE3_ATOPD Length = 441 Score = 341 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 124/446 (27%), Positives = 189/446 (42%), Gaps = 36/446 (8%) Query: 16 IITVSVNDLDSFGQGVARH-NGKTLFIPG-LLPQENAEVTVTEDKKQYARAKVVRRLSDS 73 +T+ V + +A GKT+FI G +P + V VTE+ +++R ++V+ L S Sbjct: 3 ELTLHVERMSYGPDAIAHTSEGKTVFISGGAVPGDTVSVQVTENSDRFSRGQLVKVLEAS 62 Query: 74 PERETPRCPHFGVCGGCQQQHASVDLQQRSKSA----ALARLMKHDVS--------EVIA 121 RE P + G + + Q K AL R+ V Sbjct: 63 EFREPRPNPFVALTGATPWGNIVYEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSP 122 Query: 122 DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLG 181 PWGYR + L+ + +G DIV +K CP+L + + V L Sbjct: 123 GEPWGYRNKIELAF--KRNGNKTLVGMYAPNGQDIVRIKDCPLLDKSNQKAVGAVSGALS 180 Query: 182 SLQAMRHLGHVEL---VQATSGTLMILRHTAP---LSSADREKLERFSHSEGLDLYLAPD 235 L L + V + L + TAP + L + + + Sbjct: 181 YLSGSHELDVERIGIRVSRRTKELEVALWTAPSGFPRAQVARVLSDAVKATSVVRVMTKG 240 Query: 236 SEI------LETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288 +E +SG W + +G ++ S F QVN +K+V L LDVQP+D Sbjct: 241 PSKARRVVGVERLSGSGSWSELIDGQKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPDD 300 Query: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 +DL+CG G FTLPLA +A V VE V ++N L L NV + + Sbjct: 301 EAMDLYCGAGTFTLPLAKRAGFVSAVEAYGPAVRDLRRNLELAKLDNVDAVGGDAGREFP 360 Query: 349 KQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-Y 406 D +++DP RAG V+QQ+ K I YVSC+PATLARD + ++ G Y Sbjct: 361 DTDA-----DVIIVDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSY 415 Query: 407 TIARLAMLDMFPHTGHLESMVLFSRV 432 + +D+FP T H+E++ L R+ Sbjct: 416 KPVSVTPVDLFPQTFHVENVCLLKRI 441 >UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEE5_9DELT Length = 466 Score = 339 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 160/453 (35%), Positives = 228/453 (50%), Gaps = 36/453 (7%) Query: 15 QIITVSVNDLDSFGQGV--ARHNGKT--LFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70 + T + LD G+GV A +G+ F+ LP E + + A V+ L Sbjct: 13 EPETAVIETLDRKGRGVVPAGEDGRPRQAFVHATLPGERVHFQRRDREGPSDVAGVLEVL 72 Query: 71 SDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALAR------LMKHDVSEVIADVP 124 SP R PRC H+GVCGGC H D Q K LA L E + P Sbjct: 73 ESSPLRVEPRCAHYGVCGGCSLMHLDPDEQVALKQRWLASDFEGHGLAPERWLEPLRAEP 132 Query: 125 WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLE-ALLPKVRACLGSL 183 W YRRRARL ++ ++ +GFR+ I +++ C +LA + AL+PK+ + L Sbjct: 133 WAYRRRARLGAKWVAGKDKVVVGFREQDKRFIANLEGCEVLAGRHGGALIPKLSELIAGL 192 Query: 184 QAMRHLGHVELVQATSGT----LMILRHTAPLSSADREKLERFSHSEGLDLYLA------ 233 + VE+ A ++ R P + DRE+L F+ +EGL ++L Sbjct: 193 SLATKIPQVEVSVADDTDGAVTALVFRVLEPPTDEDRERLRAFAAAEGLRVFLQSKGLDT 252 Query: 234 ----------PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + E E L L F P DF+QVNA +N+ M+ARA+E L Sbjct: 253 VALFADERGQTEGEGFEDARELSYALPEFELDLRFRPTDFVQVNAAINRSMIARAVELLA 312 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343 ++PE RVLDLFCG+GNF+L LA +A +V GVEG LV + NA NGL N F +L Sbjct: 313 LEPEHRVLDLFCGLGNFSLALARRAGAVFGVEGDAGLVARAAANAERNGLSNARFEVRDL 372 Query: 344 EEDVTKQPWAKNGF-DKVLLDPARAGAAGVMQQIIKL---EPIRIVYVSCNPATLARDSE 399 V + W D+VLLDP R+GA +++ I ++ R+VYV+C+P TLARD+ Sbjct: 373 YTQVGELEWLGGQPVDRVLLDPPRSGALAIVEHIDRIAWAGKPRLVYVACSPETLARDAA 432 Query: 400 ALLK-AGYTIARLAMLDMFPHTGHLESMVLFSR 431 L+ GY ++ ++DMFPHT H+ES+ LF R Sbjct: 433 VLVGTHGYRLSAAGVMDMFPHTAHVESIALFER 465 >UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GDX8_PHATR Length = 378 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 112/407 (27%), Positives = 173/407 (42%), Gaps = 50/407 (12%) Query: 38 TLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASV 97 + +P ++P E V V + Y+ A +V L SP+R P CP CGGCQ QH S+ Sbjct: 3 VVMVPNVIPGERVRVAVFRNFNNYSEADLVTVLEPSPDRVVPHCPLAADCGGCQLQHVSI 62 Query: 98 DLQQRSKSAALARLMKHD-------VSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRK 150 + Q+R K+ + + + D +GYR + L+ +Y +Q +GF+K Sbjct: 63 ESQRRWKTTLVQEGLAQYGLTDVTVAPTLGTDQTYGYRSK--LTPHYDAPAKQP-IGFQK 119 Query: 151 AGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAP 210 S I++V+ CPI P + A + R L S + R G Sbjct: 120 MTSRKIINVETCPIATPAINAKYQQTRQELMSQPSKRKKG-------------------- 159 Query: 211 LSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGV 270 + L D + +ET + GL T+ +F Q N V Sbjct: 160 --------------ATLLFRQGNADDDYVETNHQQPLTTTVRGLNFTYLAGNFFQNNYYV 205 Query: 271 NQKMVARALEWLDVQPED-----RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ 325 MV L + + D +CG G F + A A+VVG+E V + Q Sbjct: 206 LPLMVEHVLARAVGDDHEQPTMTHLADCYCGSGLFAIAAAPSFATVVGIEINDKAVREAQ 265 Query: 326 QNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRI 384 NA NG+ + F + E + V+LDP R G + + Q+ P RI Sbjct: 266 ANAERNGIDHCQFLAASSENIFAEIRDFPRDTTVVVLDPPRKGCSVEFLSQLYDFAPRRI 325 Query: 385 VYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 VY+SC+P T ARD++ ++ AGY I + D+FP T H+E +++ R Sbjct: 326 VYMSCDPTTQARDAQGIVAAGYRITSVQPFDLFPQTRHIECLMVLER 372 >UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n=1 Tax=Prochlorococcus marinus RepID=Y965_PROMA Length = 419 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 109/420 (25%), Positives = 178/420 (42%), Gaps = 36/420 (8%) Query: 45 LPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSK 104 LP E A V KK + A +++ + SP R P+C + CGGC Q Q K Sbjct: 2 LPGEEALVKCEYMKKNFCLASLIKIIKKSPLRVNPKCSFYSDCGGCSMQEIEPHYQFAIK 61 Query: 105 SAALARLMKH-----DVSEVIADVP---WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156 L + D E I+ P + YR ++ + + +G+ + S I Sbjct: 62 KKLLINALSRIGKLNDFPEPISITPSQFFHYRNKSTFPVYNESYGNTI-IGYYQRNSHKI 120 Query: 157 VDVKQCPILAPQLEALLPKVRACLGSLQA-----MRHLGHVELVQATSGTLMILRHTAPL 211 VD+ CP+L ++ L +R L +R G + + SG + Sbjct: 121 VDIDNCPVLDHKINKALSDIRLILKDNHINADHDIRRKGGLRHISIRSGINTNEVLITFV 180 Query: 212 SSADREKLE---------RFSHSEGLDLYLAPD------SEILETVSGEMPWYDS-NGLR 255 S+ +KL S+ G+ + P E ++G YD + Sbjct: 181 SNFSIKKLLFPITNKLNGSESNVVGILNNIQPKPNNKIFGATTEILTGRDYIYDKFCHMD 240 Query: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQ-PEDRVLDLFCGMGNFTLPLATQAASVVGV 314 + F QVN +K + + R++D + G+G ++PLA+ V+G+ Sbjct: 241 ILIGSTSFFQVNLVEAEKAINCIRNIISNTNKIVRIIDAYSGIGTMSIPLASDGYRVIGI 300 Query: 315 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VM 373 E E +NA +N ++ +TF ++++ + + K D ++LDP R G ++ Sbjct: 301 EINNEAHEIAIRNAEINNIKTITFENQDVTKYLPKILLPN---DFLILDPPRKGLDPSLI 357 Query: 374 QQIIKLEPIRIVYVSCNPATLARDSE-ALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 I KL PI I Y+SCNPATLARD L + Y+I + D FP T HLE++V R+ Sbjct: 358 DVITKLMPIHICYLSCNPATLARDLSLILREHKYSIISITAFDFFPQTTHLETLVYLKRL 417 >UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCG8_9FIRM Length = 542 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 102/443 (23%), Positives = 191/443 (43%), Gaps = 31/443 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + G+G+ N +F+PG L E +V + +K+YA V + S +R Sbjct: 1 MKTVIKKIGINGEGIGYLNRTPVFVPGALLDEEIDVKIVTKEKRYAIGSVNYIIKKSKDR 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM--------KHDVSEVIADVPWGYR 128 P+C C GC A Q + K + L + + + + ++ +GYR Sbjct: 61 IQPKCFVHHACKGCPLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYR 120 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 + +L ++ L K QL GF S+ ++K+C + +E + +V L + Sbjct: 121 NQCKLPVS-LNKEGQLCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPY 179 Query: 189 LGHVE------LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP-------- 234 H + +V+ G T +E H G+ Sbjct: 180 NHHTKSGIRSLVVRGFDGKYQCTLVTGH-DELSCSLIEDILHIRGMYSLWQSIHTVKNTA 238 Query: 235 ---DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291 +++ + + +GL L SPR F Q+N + + + R++ Sbjct: 239 EVFGKQMVHLGGEKQLPFHFDGLDLEVSPRSFFQLNTAQAKVLYQTIASLVKGHK-KRIV 297 Query: 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 + + G+G +L L +A ++G+E + V QNA+ N ++V F ++ +T Sbjct: 298 EAYSGIGAISLYLRDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAASKLTYLS 357 Query: 352 WAKNGFDKVLLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIAR 410 K D +++DP R+G ++ +++ + I+YVSCNPATL ++ L + Y + R Sbjct: 358 KNKE-IDVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEK-YRVQR 415 Query: 411 LAMLDMFPHTGHLESMVLFSRVK 433 + +DMFP+T H+E++VL S K Sbjct: 416 VIPIDMFPNTQHVETVVLLSHKK 438 >UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMX5_9FIRM Length = 383 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 166/380 (43%), Gaps = 28/380 (7%) Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAALARL---MKHDVSEVIADVPWGYRRRARLSLN 136 +CP C GCQ + + + Q K +L + AD P+ YR + + ++ Sbjct: 5 KCPVAKKCSGCQLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDPYNYRNKVQ-AVF 63 Query: 137 YLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-------- 188 + ++ G ++ + IV + C + + + ++ +R L S + + Sbjct: 64 RSDRNGRIISGVYQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTERGF 123 Query: 189 LGHVELVQA-TSGTLMILRHTA-----PLSSADREKLERFSHSEGLDLYLAPD------S 236 L HV + +G +++ + ++RF + + Sbjct: 124 LRHVLVRVGKNTGEILVTLVGGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEMLLLG 183 Query: 237 EILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFC 295 E E + GE D G R SP F Q+N +K+ A++ + +D +LD + Sbjct: 184 ENNEVLYGEGYITDILCGKRFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYS 243 Query: 296 GMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAK 354 G+G + + V G+E + V +N NGL N+ F + E + K+ Sbjct: 244 GIGTIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAKLG 303 Query: 355 NGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 +D V+LDPAR GA + ++K+ P RIVY+SCNPAT ARD + L K YT+ + Sbjct: 304 THYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKK-YTVTDIQP 362 Query: 414 LDMFPHTGHLESMVLFSRVK 433 DMFPHT H+E +V SR + Sbjct: 363 FDMFPHTRHVECVVSMSRKE 382 >UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6 Tax=Thermococcaceae RepID=Y1172_PYRFU Length = 411 Score = 337 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 110/431 (25%), Positives = 190/431 (44%), Gaps = 36/431 (8%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + L+ G G+ + +P P + EV TE +K+ A R L SP R Sbjct: 1 MRGIIKRLNDDGFGILY---NKILVPFSAPGDEVEVLKTEKQKRAKIATEWRLLRSSPIR 57 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLN 136 RC FG CGGC QH + + Q K L +++ +V + + +G+R R L++ Sbjct: 58 VGARCKVFGKCGGCILQHINYNSQLEFKKEKLRKILGREVEIIPSPRIFGHRNRIDLAVT 117 Query: 137 YLPKTQQLQMGFRKAG-SSDIVDVKQCPILAPQLEALLPKVRACLGS-----LQAMRHLG 190 +GFR+ G +VDV++CP+ + + ++R + + G Sbjct: 118 VNA------IGFREKGKWWSVVDVEECPVFGKTSKKAIERLREYIEEEKVSTWKIREDSG 171 Query: 191 HVELVQAT----SGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPD----SEILETV 242 + + +G +M+ T D F+ S + + +I + Sbjct: 172 FLRYMVLREGKFTGEIMVNFVTKEGELPDPTSYFDFADSIYWSINRSKSDVSYGDIEKYW 231 Query: 243 SGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 E + +G++ P F Q N+ +V ++++ ++V+D++ G+G F + Sbjct: 232 GKEFIMEELDGVKYLIHPNSFFQTNSYQAVNLVKTVEKFVEG---EKVVDMYSGVGTFGV 288 Query: 303 PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 LA + VVG + +E +NA +N ++ F + E D+ GFD V++ Sbjct: 289 YLAKKGMKVVGFDSNAFAIEMANKNAEINNVEAEFFVASDREVDIK-------GFDTVIV 341 Query: 363 DPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 DP RAG +++++ P IVYVSCNP T + E L Y I L LDMFPHT Sbjct: 342 DPPRAGLHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQL--NNYIIEELIALDMFPHTP 399 Query: 422 HLESMVLFSRV 432 H+E + R+ Sbjct: 400 HIELVGKLRRL 410 >UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5EMJ7_9FIRM Length = 554 Score = 336 bits (863), Expect = 9e-91, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 164/394 (41%), Gaps = 28/394 (7%) Query: 64 AKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK---HDVSEVI 120 K +R CP CGGCQ Q + K + L + + Sbjct: 164 GKKTEWKKTGKKR--SLCPVEKYCGGCQMLDMEYTEQLKRKQKVVEDLFRGVCPVKPIIG 221 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 P+ YR + + K + G + S D++ V+ C I + + ++ +R L Sbjct: 222 MKDPFHYRNKVHAVFDRD-KRGNIISGIYQENSHDVIPVETCMIEDKKADEIIGTIRGML 280 Query: 181 GSLQAMRH--------LGHVELVQA--TSGTLMILRHTAPLSSADREKLERF--SHSEGL 228 S + + L HV + +A T+ +++L +P+ + ++ H E Sbjct: 281 KSFKIRTYDEDTGYGLLRHVLIRRAFSTNEIMVVLVTASPVFPSKNNFVKALREKHPEIT 340 Query: 229 DLYLAPDSE--------ILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARAL 279 + + + G+ D G + S + F Q+N + + +AL Sbjct: 341 TIIQNINGRGTSMVLGNKENVLYGKGYIVDELCGCKFRISSKSFYQINPVQTEVLYGKAL 400 Query: 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFY 339 E ++ ++ V+D +CG+G + + QA V+GVE V+ NA++N + N+ FY Sbjct: 401 ELAGLKGQEVVIDAYCGIGTIGIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFY 460 Query: 340 HENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDS 398 + + + D V++DP R+G+ M I KL ++VYVSCNP TL RD Sbjct: 461 CNDAGRFMVNMAERGDKADVVIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVRDV 520 Query: 399 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 432 + K GY + +DMFP T H E +V R Sbjct: 521 RYMKKLGYAAEGVWPVDMFPATRHTEIIVELCRK 554 >UniRef50_O54099 Uncharacterized RNA methyltransferase SCO5901 n=27 Tax=Actinomycetales RepID=Y5901_STRCO Length = 458 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 106/451 (23%), Positives = 169/451 (37%), Gaps = 45/451 (9%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTE--DKKQYAR 63 ++ + + V V + G +AR G+ LF+ LP E VTE + ++ R Sbjct: 20 SEPVSLVGEEYEVEVGPVAHGGHCIARTSEGQVLFVRHTLPGERVVARVTEGEEGARFLR 79 Query: 64 AKVVRRLSDSPERETPRCPHFG--VCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIA 121 A V L S +R CP G CGGC QHA Q+R K +A ++ Sbjct: 80 ADAVEILDPSKDRIEAPCPFAGPGRCGGCDWQHAKPGAQRRLKGEVVAEQLQRLAGLTPE 139 Query: 122 DVPW------------------GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCP 163 + W +R R + +++ + G R+ S +I + C Sbjct: 140 EAGWDGTVMPAEGDKLPAGQVPSWRTRVQFAVDADGR-----AGLRRHRSHEIEPIDHCM 194 Query: 164 ILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFS 223 I A + L + R + VE + AT + T R + Sbjct: 195 IAAEGVSELGIERRDW-------PGMATVEAIAATGSQDRQVILT--PRPGARLPIVELD 245 Query: 224 HSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLD 283 + D + ++ F QV+ +V ++ L Sbjct: 246 RPVSVMRVGEKDGGVHRVHGRPFVRERADDRTYRVGSGGFWQVHPKAADTLVTAVMQGLL 305 Query: 284 VQPEDRVLDLFCGMGNFTLPLATQAAS---VVGVEGVPALVEKGQQNARLNGLQNVTFYH 340 + D LDL+CG+G F LA + V+G+E VE + N V Sbjct: 306 PRKGDMALDLYCGVGLFAGALADRVGDQGAVLGIESGKRAVEDARHNLAA--FDRVRIEQ 363 Query: 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSE 399 +E + + + D ++LDP RAGA +Q + L RI YV+C+PA LARD Sbjct: 364 GKVESVLPRTGI--DEVDLIVLDPPRAGAGRKTVQHLSTLGARRIAYVACDPAALARDLG 421 Query: 400 ALLKAGYTIARLAMLDMFPHTGHLESMVLFS 430 GY + L + D+FP T H+E + + Sbjct: 422 YFQDGGYRVRTLRVFDLFPMTAHVECVAILE 452 >UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0G8_ABIDE Length = 514 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 91/492 (18%), Positives = 184/492 (37%), Gaps = 73/492 (14%) Query: 11 TTTRQIITVSVNDLDSFGQGVARH--NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 +I ++ +D +G+ + + + + G + + + + + A + Sbjct: 1 MKKGEIAEGIISYVDFPDKGIIILGDDERKVVLKGGITGQKVRYRIQKKRNDRYEACIEE 60 Query: 69 RLSDSP-ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV-------SEVI 120 + + E P C ++G+CGGC + Q + KS + +++ + + Sbjct: 61 VIEKAAIETREPVCKNYGLCGGCSYHTLPYEEQLKLKSTQVKKMLDRVITTDYEYEEILG 120 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLEALLPKVRAC 179 + W R + + K + +G K G DI+ C I+ +L V Sbjct: 121 SPNEWETRNKMEYAFGDSYKGGPMSLGLHKRGHFHDILYTDDCKIVNDDFNKVLRCVFEH 180 Query: 180 LGS-----LQAMRHLGHVEL----VQATSGTLMILRHT---------------------- 208 H G++ A +G +++ T Sbjct: 181 FNEAEISFYNKAMHRGYLRHLLVRRAAKTGEILVALETSSDFITKSEKNAMEMDSLKEFL 240 Query: 209 ----------APLSSADREKLERFSH----------SEGLDLYLA------PDSEILETV 242 S A++ L + G+ + +E E + Sbjct: 241 ASSNAVYDKDKEQSQAEKNILAKMVEKLRKVSLEGEIVGIIHLINNEVSDDVKAERQEIL 300 Query: 243 SGEMPW-YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 G + GL+ + F Q N+ + + ++ E++ + V DL+ G G Sbjct: 301 FGRDYINEELLGLKFKITTFSFFQTNSLGAEVLYSKVREYVGNNEGNVVYDLYSGTGTIG 360 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 ++ A V+G+E V V +NA+LNGL N F ++ + + + K D ++ Sbjct: 361 QIISPVAKKVIGIEIVEEAVIAANENAKLNGLTNTEFLAGDVFKVLDEV---KEKPDFII 417 Query: 362 LDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 LDP R G + +++++ IVY++C P +L RD GY + ++ + DMFP T Sbjct: 418 LDPPRDGVSPKALKRVLSYGVRDIVYIACKPTSLVRDIPEFEAVGYRVKKVCLCDMFPET 477 Query: 421 GHLESMVLFSRV 432 H+E++ L S++ Sbjct: 478 LHVETVCLLSKL 489 >UniRef50_B8C918 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C918_THAPS Length = 387 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 105/414 (25%), Positives = 175/414 (42%), Gaps = 51/414 (12%) Query: 38 TLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASV 97 +FIP ++P E V + + Y+ A ++ + SP+R P C +CGGCQ QH ++ Sbjct: 3 VIFIPNVIPGEVCRVRIYRNHASYSDADLLEIVQPSPDRIEPLCSLANICGGCQYQHINI 62 Query: 98 DLQQRSKSAALARLMKHDVSEVIADVP-----------WGYRRRARLS--LNYLPKTQQL 144 Q++ K+ + L + D P +GYR + + + Sbjct: 63 GRQRQMKTEQVQELFERIGGLKAEDFPTVLDTLGTEEVFGYRSKITPHYDVITNKSCEIG 122 Query: 145 QMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMI 204 +GF++ S +VDV C I P + L KVR L + G ++ Sbjct: 123 PIGFKEKASRRLVDVPYCHIATPDINTALSKVREETRDKAVQGKLK-----KPAKGATLL 177 Query: 205 LRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFI 264 LR ++ET L F +F Sbjct: 178 LRDA--------------------------GDGLVETNHVAYVNTTVKDLTFRFQAGNFF 211 Query: 265 QVNAGVNQKMVARALEWLDVQPE-----DRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Q N + KMV ++ ++ ++D +CG G F L ++ VG+E Sbjct: 212 QNNPFMLPKMVDLVVDAATIKSSSGEAMTHLIDCYCGSGLFALGCSSSFDVCVGIEVNDK 271 Query: 320 LVEKGQQNARLNGLQNVTFYHENLEE-DVTKQPWAKNGFDKVLLDPARAGA-AGVMQQII 377 V++ + NA LNG++N F + E ++K P V++DP R G ++Q+ Sbjct: 272 AVQEARANAELNGIKNCDFVSASAEAIFLSKDPVKGKESTVVVVDPPRKGCSEEFLEQLD 331 Query: 378 KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + +P R+VY+SC+PAT ARD++ L+ GY I + D+FP T H+E + +F R Sbjct: 332 EYKPQRVVYMSCDPATQARDAKFLVAHGYDIVSVQPFDLFPQTRHIECLAIFER 385 >UniRef50_A6G9S9 RNA methyltransferase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G9S9_9DELT Length = 482 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 129/450 (28%), Positives = 186/450 (41%), Gaps = 40/450 (8%) Query: 16 IITVSVNDLDSFGQGVARHNG-----------KTLFIPGLLPQENAEVTVTEDKKQYARA 64 +TV ++DL G GV R + F+ G LP E + V + K++ R Sbjct: 11 ELTVRIHDLAHGGAGVGRPESETGTPEGEAETRVCFVDGALPGERVRMRVDTENKRWLRG 70 Query: 65 KVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV----I 120 V L +PER C CGGC QH Q + K+ + ++ V Sbjct: 71 HCVEVLEAAPERSEAPCALADRCGGCGWQHVEASAQAKLKAKIVEGQLRRLPVVVAESLP 130 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + P GYRRRAR ++Y L++GF S IVD CP+L P L+ + +VRA Sbjct: 131 SPSPLGYRRRAR--VHYRKTAAGLELGFYGQRSHAIVDCATCPVLDPALDWAVQQVRAWA 188 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLS------------SADREKLERFSHSEGL 228 L G V + S ++ L D E E L Sbjct: 189 QWLPER---GEVVGLSNGSEVVLGLPGVRHDPELEAAIRAVLGEPKDGEDSEESKEPVLL 245 Query: 229 DLYLAPDSEILETVSGEMPWYDSNGLRLTFS--PRDFIQVNAGVNQKMVARALEWLDVQP 286 + L E + V D +G S P F Q A N+ +V + Sbjct: 246 GVQLRGGRERV-GVGRTHLELDGDGPTPPVSQGPFTFSQAQAAQNRNLVEHVAARVRESG 304 Query: 287 ED-RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 D RVL+L G+GNF+ LA A +V V+G + Q+ A GL + E Sbjct: 305 RDARVLELHAGVGNFSRVLARSAKAVWAVDGDREAIANLQRTAERWGL-RINAKRGQAER 363 Query: 346 DVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404 + K + +D V+LDP R+G + ++ + R+VYVSC+PATLARD LL Sbjct: 364 LLAKLATSGRRYDVVVLDPPRSGIGEAAARDLLSVVRDRVVYVSCDPATLARDLAVLLAE 423 Query: 405 --GYTIARLAMLDMFPHTGHLESMVLFSRV 432 G +A L + DM P T +E + +RV Sbjct: 424 GSGLELADLRVFDMMPMTPEVEVVATLNRV 453 >UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1 Tax=Nanoarchaeum equitans RepID=Y053_NANEQ Length = 447 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 104/436 (23%), Positives = 178/436 (40%), Gaps = 41/436 (9%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + D G GV G + +P P + E K + ++V+ + +SP R Sbjct: 27 MKIYIEGFDEKGYGV----GNNIHVPFAYPGDIVE-VKVRRKGKKKIGEIVKIIEESPYR 81 Query: 77 ETPR-CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSL 135 + + C H G CGGC Q K + L +D + + YR R + Sbjct: 82 TSNKYCAHLGKCGGCLWGLMDYQYQLEFKKKVIENLFGYDKDIIPSPKTIYYRNRMDYPI 141 Query: 136 NYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM-----RHLG 190 ++ + +K+C +L+ + E ++ + + + +H G Sbjct: 142 YNKVSLKEPG------KWYGYIPIKECKMLSKEAEIIINEFNKFIEKYKIPSWDTVKHTG 195 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGL-----DLYLAPD--------SE 237 + + G R ++ ++ E + E + +Y SE Sbjct: 196 FLRYLVIREGKFTKERMIHIITYKRKKFEELWDFIENIKDLVTSVYWGIREDLGDVSISE 255 Query: 238 ILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296 L G + + SP F Q N+ +V E+L+ D VLDL+ G Sbjct: 256 KLYHYYGSKFLRERILDIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYSG 315 Query: 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356 +G F+L +A + V+G+E V VE + NA +N + F +E+ Sbjct: 316 VGLFSLQIANEVKKVIGIEIVEEAVEMAKLNASINNID-AEFIASPVEK------APIIK 368 Query: 357 FDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 +K+++DP RAG ++ I K+ P IVYVSCNP T RD L GY I + LD Sbjct: 369 ANKIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKL--KGYKIIDMQPLD 426 Query: 416 MFPHTGHLESMVLFSR 431 MFP+T H+E+++L + Sbjct: 427 MFPNTPHIENVILMKK 442 >UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780 n=3 Tax=Thermococcaceae RepID=Y1078_PYRAB Length = 405 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 107/432 (24%), Positives = 183/432 (42%), Gaps = 47/432 (10%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + L+ G GV K + +P P + V E K+ A + + SP R Sbjct: 1 MRGVIRKLNDDGFGVL----KGILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLR 56 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLN 136 PRC FG CGGC QH + D Q K L R++ +V V + +G+R R L++ Sbjct: 57 VGPRCKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAIT 116 Query: 137 YLPKTQQLQMGFRKAG-SSDIVDVKQCPILAPQLEALLPKVRACLGS-----LQAMRHLG 190 +GFR+ G IVD+ +CP+ + +++ + + G Sbjct: 117 KDG------IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEG 170 Query: 191 HVELVQATSG----TLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSG-- 244 + + G +M+ T + D F +Y + + + G Sbjct: 171 FLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYFDF-----DSIYWSVNRSKSDVSYGDI 225 Query: 245 ------EMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMG 298 E + + P F Q N+ +V + E ++ +++LD++ G+G Sbjct: 226 ERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEG---EKILDMYSGVG 282 Query: 299 NFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 F + LA + +V G + +E ++N +N + F + + + GFD Sbjct: 283 TFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVAS------DREVSVKGFD 335 Query: 359 KVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMF 417 V++DP RAG +++++ + +P IVYVSCNP T ARD + L Y I + LDMF Sbjct: 336 TVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD---YRIDEIVALDMF 392 Query: 418 PHTGHLESMVLF 429 PHT H+E + Sbjct: 393 PHTPHVELVAKL 404 >UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S3A2_FINM2 Length = 403 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 106/424 (25%), Positives = 201/424 (47%), Gaps = 29/424 (6%) Query: 17 ITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPER 76 + + + D+ G+ VA++ GKT+F+ G E E ++KK A + + SP + Sbjct: 1 MKLEIIDMIDDGRCVAKYEGKTVFVDGGSIGEIIEAKKIKEKKNLIFATKTKTIQQSPHK 60 Query: 77 ETPRCPHFGVCGGCQQQHASVDLQQRSKS----AALARLMKHDVSEV--IADVPWGYRRR 130 + P CPHF C GC Q + + + K L R+ K D+ +V + + + YR + Sbjct: 61 QEPLCPHFYECDGCSMQDITYEKELEIKKNSVLNKLQRIAKLDIKDVDILTNAEYYYRNK 120 Query: 131 ARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLG 190 L + + ++G+ + ++ + C I + + ++ + + + Sbjct: 121 VDLKV------ENGKIGYYNRKTHNLTQISTCKIASTAINEMINWLVN-----HDLNGVS 169 Query: 191 HVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYD 250 +++ + + I L + LE + + + + ++ + + + + D Sbjct: 170 EIKIRSNYNDEIQI-----SLDYISDQLLENLKTVDSI-VEIYEKNKNFDLIYKKKQFVD 223 Query: 251 SNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309 G L SP+ F QVN + A + ++ + DR+LDL+CG+G T+ + Sbjct: 224 KIGDLSFIISPKSFFQVNKYNTSLLYDTAKQMMNAEANDRILDLYCGIGTTTMYIGN--G 281 Query: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369 + +GVE V V+ +N +LN L+++ F E E V K FD +L+DP R G Sbjct: 282 NTIGVEVVKDAVKDANENKKLNNLESIQFIEEKSENVVGKLTQE--HFDVILVDPPRKGM 339 Query: 370 AG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVL 428 V+ IIK ++VY+SC+PATLARD +AL + G+ + + ++DMF T H+E++ L Sbjct: 340 DEKVVDAIIKSTAKKLVYISCDPATLARDLKALTENGFGVEDVKLVDMFAKTMHVETVAL 399 Query: 429 FSRV 432 ++ Sbjct: 400 IQKI 403 >UniRef50_A6GQJ2 23S rRNA (Uracil-5-)-methyltransferase (Fragment) n=1 Tax=Limnobacter sp. MED105 RepID=A6GQJ2_9BURK Length = 401 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 132/396 (33%), Positives = 199/396 (50%), Gaps = 14/396 (3%) Query: 1 MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60 M + R + V++ +D G+ +GK FI G + E +T K Sbjct: 1 MGRKKKKDRTPVVFPQVQVAIESIDLDANGIGHVDGKVHFIDGAITGETVVAEITRVKPS 60 Query: 61 YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH------ 114 Y++ + ++ L+ R TP+CPH+GVCGGC QH + Q K+ AL L++ Sbjct: 61 YSKGRTLQVLNSVSTRTTPKCPHYGVCGGCAMQHIEPNAQVAIKNRALEDLLQRIGRQTP 120 Query: 115 -DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173 + I WGYR RARLS ++ K + +GF + SS + D++ C +L + ++ Sbjct: 121 EQMMPPIYGSFWGYRHRARLSTRFVIKKDRFFVGFHEKSSSYVADMQVCHVLPKHVSNMI 180 Query: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233 + L +L + +EL T M+LRH PLS +D + L F + G+D +L Sbjct: 181 VPLGNMLVTLSIFMRVPQIELAVGDGVTAMVLRHLEPLSESDLDTLRAFGNEWGVDWWLQ 240 Query: 234 PDSEILETVSGEMPWYDS------NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 P D G+R+ F P DF QVN +N M++RA+ LD++PE Sbjct: 241 PGGPATAHRLEADKPVDLTYRIPSFGIRMRFRPTDFTQVNHMINDAMISRAVSLLDLKPE 300 Query: 288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEED 346 DRVLDLFCG+GNF+LPLAT+++ V G EG LV + +NA NGL F+ NL E Sbjct: 301 DRVLDLFCGLGNFSLPLATKSSYVKGFEGSQDLVSRAGENAEFNGLADKTEFHVRNLFEV 360 Query: 347 VTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPI 382 T + + FDK+L+DP R GA + + I+ Sbjct: 361 ETPEWESWGQFDKLLVDPPRDGALEICKAIVGARAE 396 >UniRef50_Q09833 Uncharacterized RNA methyltransferase C4G8.07c n=2 Tax=Schizosaccharomyces RepID=YAD7_SCHPO Length = 527 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 105/455 (23%), Positives = 180/455 (39%), Gaps = 62/455 (13%) Query: 7 AKRRTTTRQIITVSVNDLDSFGQGVARH--NGKTLFIPGLLPQENAEVTVTEDKKQYARA 64 A Q I V ++ L S G G+ + + +P LP + + + YA A Sbjct: 104 ANVPFERFQEIEVKISYLSSSGDGIGLVCNDQYAVVVPFTLPGDIVKAKLHFLADTYALA 163 Query: 65 KVVRRLSDSPERETP--RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV------ 116 + +S S +R+ +CP+F CGGCQ Q S D Q K + + ++ Sbjct: 164 DFLEVISPSEDRDDTLIKCPYFAKCGGCQYQMLSYDKQLLQKKRVVEKAFQYYSKLDSSL 223 Query: 117 -----SEVIADVPWGYRRRARLSLNYLPKT--QQLQMGFRKAGSSDIVDVKQCPILAPQL 169 V + + + YR + + L +GF++ G ++D+++CPI + Sbjct: 224 LPAIKDTVGSPLQYNYRTKITPHFDVPKGGTKGPLIIGFQEKGRRRVMDIEECPIATKTI 283 Query: 170 EALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLD 229 PK+ + S G +++R + + +G Sbjct: 284 NEEYPKIIEDVQS----------RANTFKRGATILMRDS--------------ATEDGKH 319 Query: 230 LYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL------- 282 + I+ L TF F Q N + +K + E L Sbjct: 320 CVITDHKMIVR--------EQFGDLSFTFPAGAFFQNNNSILEKFTSYVREQLLNPFGRK 371 Query: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHEN 342 + Q +D +CG G F++ + SV+GVE V ++NA+ N + N TF Sbjct: 372 EHQRPKYFVDAYCGSGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQ 431 Query: 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEAL 401 E+ + N +++DP R G + Q+++ P RIVY+SCN T ARD L Sbjct: 432 AEKIFSSIETPPNE-TAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQARDVGFL 490 Query: 402 LKA----GYTIARLAMLDMFPHTGHLESMVLFSRV 432 L Y I + D+FP + H+ES++ ++V Sbjct: 491 LSQEKGRSYKIDEIRGFDLFPQSHHVESILTLTKV 525 >UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Bacteria RepID=C7N354_SLAHD Length = 401 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 94/391 (24%), Positives = 154/391 (39%), Gaps = 39/391 (9%) Query: 80 RCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV-------SEVIADVPWGYRRRAR 132 CP CGGC Q K + L + + VP YR + Sbjct: 8 SCPIDNRCGGCSWLRVPYGQQLARKQQHVDELFADLIDDGTQCLPILGMKVPLHYRNKVV 67 Query: 133 LSL----NYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC-----LGSL 183 + + +++ G + G+ ++D +C I Q +A++ +R + Sbjct: 68 SPFVGIYDKRTRRRRILCGMYERGTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEPY 127 Query: 184 QAMRHLGHVELVQAT----SGTLMILRHT-APLSSADREKLERFS--HSEGLDLYLAPDS 236 R G + Q SG +M+ T ++ + H E + +S Sbjct: 128 DEDRDEGFLRHAQVRVGHNSGEVMVTLVTRTEQFPTAKKFVRALVSRHPEITTVVQNVNS 187 Query: 237 EILETVSGEM---------PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPE 287 + G+ GL S F QVN+ + + + A+ + Sbjct: 188 RKTNVIMGDKERKLYGPGFILDTLCGLSFRISSTSFYQVNSTQTEVLYSTAIRMAKLTGT 247 Query: 288 DRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 341 + V+D +CG G L AA ++GVE V + NAR NG+ N F Sbjct: 248 ETVMDAYCGTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFVAA 307 Query: 342 NLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEA 400 + + +Q D + +DP RAG+ ++ + P RIVY+SCNP T ARD++ Sbjct: 308 DAGAYMREQAEQGRSVDVLFMDPPRAGSTPDFLKAACSISPKRIVYISCNPTTQARDAKY 367 Query: 401 LLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 L++ GY I L +DMFPHT H+E ++ SR Sbjct: 368 LIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398 >UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMB5_9FIRM Length = 448 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 95/444 (21%), Positives = 183/444 (41%), Gaps = 34/444 (7%) Query: 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 ++ + + D + G GVA+ +F+ G L + +V +T+ KK+++ V + L S Sbjct: 2 ELKNLEIIDNTNEGLGVAKSKEGIVFVKGGLVGDIVDVEITQKKKKFSNGYVKKYLKYSE 61 Query: 75 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP-------WGY 127 RE + + + K ++ + + DV Y Sbjct: 62 YRENLYDEKLTDI--YHFINLKYEKELELKKKMFLDSLRKNTGIELEDVEILENKNNLNY 119 Query: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR 187 R + L + ++ + + ++ CP+ + LP ++A L + Sbjct: 120 RNKIEL-----KMNEDFELCYCVDNGESKIKLENCPLSDECINKFLPFLQAKLKEFKINS 174 Query: 188 H--------LGHVELVQATSGTLMILRHTAPLSSADREKLERFSH-SEGLDLYLAPDSEI 238 + L ++ + +MI ++ S + + Y+ +++ Sbjct: 175 YDVNTDEGILKNISIRSNYKSEIMITVVVKKDIVEAHNFVKSLSEYEKLVSGYININTKK 234 Query: 239 LETVSGEMP--------WYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 + G+ + D G SP+ F QVN + + A ++L + Sbjct: 235 ASIIMGQEIKLIFLKKSFTDKIGKYEFNISPKSFFQVNRFQTENLYKIAKDFLGGNKDKN 294 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 +LDL+ G+G ++ + V+GVE V V+ ++N +LN ++NV F + EE + + Sbjct: 295 LLDLYSGIGTTSIYFSENFKKVIGVEVVKDAVKDAKENLKLNDVKNVEFLYGKSEEKIEE 354 Query: 350 QPWAKNGFDKVLLDPARAGAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 N D + +DP R G V+ IIK ++VYVSCN ATL RD + + G+ + Sbjct: 355 ILK-NNNIDIISVDPPRKGLDKKVVDTIIKSNIKKVVYVSCNGATLTRDLKYFIDGGFEL 413 Query: 409 ARLAMLDMFPHTGHLESMVLFSRV 432 ++ + DMF TGH E +V +V Sbjct: 414 KKVKLCDMFSKTGHCEVVVEIEKV 437 >UniRef50_UPI0000E0E6C1 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E6C1 Length = 484 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 133/486 (27%), Positives = 223/486 (45%), Gaps = 57/486 (11%) Query: 1 MAQFYSAKRRTTTR-----QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVT 55 MAQF+ + + +++ ++T+ ++ GQG+ + + + + G LP E V +T Sbjct: 1 MAQFFKPQHKASSKAKRQLPVVTLEISGFTLNGQGICKSHSPVVIVSGALPGETVIVQIT 60 Query: 56 EDKKQYARAKVVRRLSDSPERETPRCPHF----------------GVCGGCQQQHASVDL 99 KKQ V+ ++ +R CP CGGCQ Sbjct: 61 AQKKQVWLGSVISVITSHAQRIAAPCPFAVGAQRDNKVLPTQLAMPTCGGCQLSFVEPSA 120 Query: 100 QQRSKSAALAR-------LMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAG 152 K AL ++ + P YRR+ARL+++ K Q +++GFR+ Sbjct: 121 LLALKQTALDEYVHQHIGAIELPWRAPVLSAP-QYRRKARLAIDARDK-QAIKVGFRQTS 178 Query: 153 SSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLS 212 + ++ + QC +L L+ +L + + H+GH+ L+++ ++ PLS Sbjct: 179 AKTVMSIPQCEVLEGALQPVLNAIHTSSAQWHWLIHVGHITLLESRDQIVVAFNTQQPLS 238 Query: 213 SADREKLERFSHSE-------------------------GLDLYLAPDSEILETVS--GE 245 L+ FS + L L+ A D++ + + Sbjct: 239 KQALAALQAFSQAHEVLIAVTVKGVPKGVPSLPHNDDAKWLTLHWADDNDAMNVSLAQPD 298 Query: 246 MPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305 + + + DFIQVNA +NQ M+ +++ L + P+DRV+DLFCG GNF++P+A Sbjct: 299 LWLTSIDECQYPVGLDDFIQVNASLNQAMIYTSIDLLALAPDDRVVDLFCGSGNFSVPIA 358 Query: 306 TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 Q V+G+EGV A+V++ Q A +G+ NVTF H +L +K+LLDP+ Sbjct: 359 KQTEYVLGIEGVEAMVQQANQGAVASGVDNVTFLHADLTTSEAMHAIKAAKCNKLLLDPS 418 Query: 366 RAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES 425 R GA ++ Q+ + RIVYVSCNP + D + LL AG+ DMF T H E Sbjct: 419 REGAKAILAQVDLQQFERIVYVSCNPQSWVHDIQLLLDAGFACQHTQFFDMFAGTTHTEL 478 Query: 426 MVLFSR 431 + +F+R Sbjct: 479 VSVFTR 484 >UniRef50_A6DJC1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJC1_9BACT Length = 403 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 110/424 (25%), Positives = 181/424 (42%), Gaps = 43/424 (10%) Query: 19 VSVNDLDSFGQGVARHN-GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77 + ++++ G G R + G+ F+P +P E +V++ +D K + R +++ + S R Sbjct: 7 LVIDNIAYGGDGAGRLDDGRVCFVPFSVPGEKVKVSIVKDNKNFCRGEILELVEASENRV 66 Query: 78 TPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---------DVSEVIADVPWGYR 128 C +FG CGGC QH D Q + K A +++K DV V + W YR Sbjct: 67 EAPCQYFGECGGCAYQHIDYDEQVKIKEAQFRQVLKRIGGLNIDEDDVEVVSSTNKWNYR 126 Query: 129 RRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH 188 R L+ +T ++ GF + +V +K+C + + L+P + Sbjct: 127 NRISLNARRT-ETDEVIYGFIARDNRSLVRIKECLLAQAPVNELVPDL--------NKTK 177 Query: 189 LGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPW 248 GH R + R + S + + + E+ Sbjct: 178 WGH---------------KNRQRDRPLRATI-RHASSNKETVAFYGKAPVGLPWRREVY- 220 Query: 249 YDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL-DVQPEDRVLDLFCGMGNFTLPLATQ 307 N F QVN V + + E + ++ V+D FCG G ++ L + Sbjct: 221 ---NDREFVMPAGSFSQVNRDVAEALQRMCAEIISSLEACTFVIDAFCGSGFLSMGL--R 275 Query: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA 367 VVG+E VE NA+ GL + ++ + + ++ ++LDP RA Sbjct: 276 DVKVVGLEIDAKGVEAANFNAQDQGLTTHKYVAGDVNKLLRQRLGKLAPETTLILDPPRA 335 Query: 368 GAA-GVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESM 426 G G ++ I K P I+YVSC+P TL RD + +L GY +LAMLDMFP T H ES+ Sbjct: 336 GVGPGTIKAISKRSPKWILYVSCDPGTLGRDLKEILPLGYKHKKLAMLDMFPQTSHFESL 395 Query: 427 VLFS 430 +L Sbjct: 396 ILLE 399 >UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichia RepID=C7NAY8_LEPBD Length = 476 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 105/479 (21%), Positives = 185/479 (38%), Gaps = 62/479 (12%) Query: 8 KRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIP-GLLPQENAEVTVTEDKKQY--ARA 64 K+ +I + + +LD+ G+ + +++ + E + +K++ Sbjct: 6 KKSLKKGDLIQLKIVNLDTKGRAYGFFDENKIYVNINAAENQVVEGIFVKRRKKFELIHC 65 Query: 65 KVVR------RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH---- 114 K++ + D ER+ GGC Q+ + D Q K+ + + + Sbjct: 66 KIIDFAGRQNVIYDDIERQN---------GGCNYQYYTYDEQLEIKTEHIKKELDRIIKY 116 Query: 115 ---DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS-SDIVDVKQCPILAPQLE 170 V + P YR + S K + +G K S DIV+V ++ Sbjct: 117 DYIFEEPVRSVKPDKYRNKMEFSFGNAAKGGPIILGLHKQNSFHDIVEVDGLKLMDDNFN 176 Query: 171 ALLPKVRACLGS-----LQAMRHLGHVELVQATSGT-----LMILRHTAPLSSADREKLE 220 + + H+G + L+ + T +S ++EK + Sbjct: 177 KIYVFCNEFCKKTGFDFYHRLDHIGFFRNLVIRKAEFTKQILVNIVTTTQISEMEKEKFQ 236 Query: 221 RFSHSEGLDLYLAPDSEILETV--------------------SGEMPWYDSNGLRLTFSP 260 + L L L + +I + + GL+ SP Sbjct: 237 KEFKEGLLALNLDDNFKITGILHTFNDNFSDMVISESETILYGERDLTEEIFGLKFKISP 296 Query: 261 RDFIQVNAGVNQKMVARALEWLDVQPE-----DRVLDLFCGMGNFTLPLATQAASVVGVE 315 F Q N+ +K+ + L +L+ V DLF G G ++ +A V G+E Sbjct: 297 YSFFQTNSQTVEKLYGKVLTYLEEIENIKIDEATVFDLFSGTGTIGQIVSKKAKQVYGIE 356 Query: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG-VMQ 374 VP VEK +NA+LN +QN F ++ + + D ++LDP RAG + Sbjct: 357 LVPEAVEKANENAKLNNIQNAHFIAGDVFAKLDEFDNDGIKPDILILDPPRAGVGEKTIT 416 Query: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK 433 +++K I+YVSCNP TL D + GY + R +++DMFP T HLE + L + K Sbjct: 417 KLVKYNTKNIIYVSCNPKTLMTDLIKFGEFGYRLVRCSVVDMFPVTPHLEVVCLLEKFK 475 >UniRef50_C2EN78 TrmA family tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lactobacillus ultunensis DSM 16047 RepID=C2EN78_9LACO Length = 465 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 94/453 (20%), Positives = 185/453 (40%), Gaps = 31/453 (6%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + + I+ + ++ L G G+A+++ KT+F+ LP E + V K K Sbjct: 11 MRQVKMKKDDILDLKIDSLSPEGGGLAKYDDKTVFVRDALPGEEVKAKVLSIHKNTIDTK 70 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV-----I 120 V + +P R + G + + D Q + K + +L+ + I Sbjct: 71 SVDIIKANPARVYGSDEKWANDGYARLANLKYDQQLKFKEDRIKKLLNKYGFKEVKVNKI 130 Query: 121 ADVPW--GYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRA 178 P GYR L + + QL++GF + + + + + I + + VR Sbjct: 131 LPSPLTKGYRNEIVLPVREV--KGQLEVGFFEPRTGRFIPLNKSIITNEAVVTAVYAVRD 188 Query: 179 CLGSLQAMRH--------LGHVELVQATSGTLMIL-RHTAPLSSADREKL-----ERFSH 224 L L+ + + +++ ++ MI+ T D ++ E+ + Sbjct: 189 ILRKLKVPAYDPNTNSGFIRDIDVRRSQGKKGMIVTLITHENDRVDLPEIVGLITEKLHN 248 Query: 225 SEGLDLYLAPDSE-------ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVAR 277 G+ L P + + + +G++ SP+ + Q N + + Sbjct: 249 VNGVVLNYNPHKTDEIFGKSNIPLWGNDYVEDELDGIQFKISPKSYFQANGSQLKPITDL 308 Query: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVT 337 AL LD++ D+++D FCG+G L A + A+V G++ ++ ++NA N + N T Sbjct: 309 ALSLLDLKDTDKLIDAFCGVGTVGLLAAKKVAAVRGIDAERVSIQDARENADTNKIDNAT 368 Query: 338 FYHENLEEDVTKQPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLAR 396 +Y+ ++E+ +++ ++ P G G + K+ P RIVY S NP T+ R Sbjct: 369 YYNGSVEQVLSRFAKNDEKGTVIMATPPAKGLSHGFVDAAAKMHPRRIVYGSTNPDTMVR 428 Query: 397 DSEALLKAGYTIARLAMLDMFPHTGHLESMVLF 429 D K GYT + +D P T ++ + Sbjct: 429 DLACFKKKGYTCTEITPIDTAPQTPEVKCFGVL 461 >UniRef50_Q6MGU3 Uncharacterized RNA methyltransferase Bd3828 n=1 Tax=Bdellovibrio bacteriovorus RepID=Y3828_BDEBA Length = 393 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 117/439 (26%), Positives = 185/439 (42%), Gaps = 76/439 (17%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 + I +++ L G GVARH G +F+P P E +T KK + A+VV Sbjct: 11 KAPLLGSKIKLNIEKLAIGGAGVARHEGMVVFVPQAAPNEEILAEITLVKKNFMEARVVE 70 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHD--------VSEVI 120 L+ SP R P CP CGGC QH + + Q+R K + +K + Sbjct: 71 ILTASPHRREPPCPVAHTCGGCNWQHITEEEQRRQKHTLVLETIKKFNRDLEFNYLPIQP 130 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 + YR R + PK + + GF S IV+ C I L +V+A Sbjct: 131 SPRVLRYRNRIQ------PKFKNGRFGFFARNSHQIVETMDCLITEETLTDKFAEVKAWA 184 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 ++ D ++LE + EG Y Sbjct: 185 E----------------------------KKNAKDLQRLEMYIAEEGDVRYG-------- 208 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 + + +G+ F QVN N+ ++ AL+W P +V DL+ G GNF Sbjct: 209 -----LITDEDDGI-------GFSQVNRFQNEDLLRTALDWAGDGPYKKVYDLYAGAGNF 256 Query: 301 TLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFD 358 T PLA + + ++GVE P LVE+ + + +T++ ++E + + K+ D Sbjct: 257 TFPLAAKYAGSEIIGVELNPKLVERARSKITD---KRMTYFMSDVETYMRRASIGKD--D 311 Query: 359 KVLLDPARAGAAG-VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG------YTIARL 411 V+LDP RAGA+ MQ + +P +I+Y+SC+P +LARD Y + R+ Sbjct: 312 LVVLDPPRAGASEYTMQTLAAAQPRKIIYISCHPVSLARDLNWFFAQTQKLGIKYKLDRV 371 Query: 412 AMLDMFPHTGHLESMVLFS 430 +MFP T H+E++ Sbjct: 372 QTFEMFPQTDHVETIAELR 390 >UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycoplasma RepID=A5IZA4_MYCAP Length = 446 Score = 324 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 99/442 (22%), Positives = 200/442 (45%), Gaps = 26/442 (5%) Query: 6 SAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAK 65 + T + +I V D G G + + +F+ LLP E A++ + + ++A AK Sbjct: 2 KLQNNTVVKNVIAV---DHSYEGLGTVKTDDYPIFVENLLPGERADILIKKANSKFAFAK 58 Query: 66 VVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDV------SEV 119 V++R ++S +R G + S Q K + +L K ++ + Sbjct: 59 VIKRYNESTKRIKVVNEKLMESGSAPLANISYSNQLEFKENFVKQLFKRNIHYTDILPIL 118 Query: 120 IADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRAC 179 +D W YR + L L +++G + S ++++ +++ + E +L + Sbjct: 119 KSDYEWRYRNK--LLLFTKNVQNTIKIGLYEKNSHNLIEQDSYDLVSNEAENVLIWLSKN 176 Query: 180 LGSLQAMRHLGH----VELVQAT-SGTLMILRHTAPLSSADREKL----ERFSHSEGLDL 230 + +++ + + L ++ + +M+ + ++ + + F + E + + Sbjct: 177 INKYDCFKNVKNALTSITLRESYVNKKIMLYFTASKAFDLSKQFVNDIAKEFENIETIMV 236 Query: 231 YLAPDSEILETVSGEMPWYDSNG-LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDR 289 + D + +S + D G ++ F Q+N+ +K+ L+ L++ Sbjct: 237 IVN-DKVVYSYLSEKSYLIDKIGKFSFKYNWNSFFQINSNQTEKLYLLLLDNLNLDKSKV 295 Query: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 VLD +CG+G +L LA +A V G+E V V ++NA N + N F ++ + + Sbjct: 296 VLDAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIYNTEFISGDVIKTIDS 355 Query: 350 QPWAKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTI 408 D V++DP R+G + + +II ++P I Y+SCNP T+ RD + L+KAGY + Sbjct: 356 I---NEKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYEL 412 Query: 409 ARLAMLDMFPHTGHLESMVLFS 430 + L DMF T H+E + + Sbjct: 413 SFLRPCDMFSQTYHIEMVAVLK 434 >UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRA8_9BACE Length = 412 Score = 324 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 99/378 (26%), Positives = 157/378 (41%), Gaps = 27/378 (7%) Query: 80 RCPHFGV-CGGCQQQHASVDLQQRSKSAALARLMKHD---VSEVIADVPWGYRRRARLSL 135 RCP CGGC + Q + K A L L+ + + PW YR + S Sbjct: 34 RCPLEKRGCGGCPMLSLPYEEQLKRKQAKLEELLGKFGPVAPILGMEHPWHYRNKVISSF 93 Query: 136 NYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL-----GSLQAMRHLG 190 + P + L G G+ +V V+QC + L+ + VR R G Sbjct: 94 AWGP-GKNLVSGIYAQGTHRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENRRTG 152 Query: 191 HVELVQAT----SGTLMILRHTA-PLSSADREKLERFSH--SEGLDLYLAPD-------- 235 + V +G ++ + TA P+ R R + L + Sbjct: 153 LIRHVLCRHSLSTGEVLAVLVTASPVLPGARAFAARVKELCPAIVTLAQNVNPRPGSAVL 212 Query: 236 SEILETVSGEMPWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLF 294 + + + G D G++ +P F Q+N + + + A+ + ++RVLD + Sbjct: 213 GDREKILYGRGYIEDVLCGVKFRIAPSSFYQINPVQTEVLYSTAISAARLTGKERVLDAY 272 Query: 295 CGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 CG+G L A A SVVGVE + NA+ N ++N F + + Sbjct: 273 CGVGTIGLSAAAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAFLDGMAARG 332 Query: 355 NGFDKVLLDPARAGAAGV-MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413 D V LDP RAG+ V + + ++ P R VY+SCNP T RD E L G+ + Sbjct: 333 EQLDVVFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARGWRAESIQG 392 Query: 414 LDMFPHTGHLESMVLFSR 431 +DMFPHT H+E++ + +R Sbjct: 393 VDMFPHTEHIETVAVLTR 410 >UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8 Tax=Thermococcaceae RepID=Y1259_PYRHO Length = 412 Score = 324 bits (830), Expect = 5e-87, Method: Composition-based stats. Identities = 98/430 (22%), Positives = 178/430 (41%), Gaps = 34/430 (7%) Query: 16 IITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 + + ++ G GV + +P P + EVT T ++ A+ + ++ SP Sbjct: 2 EMRGKITKINENGLGVL----GNILVPFAYPGDEVEVTETRERFGKIIARDFKLMTPSPL 57 Query: 76 RETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSL 135 R +C HFG CGGC Q Q + K R+ + + W +R + + Sbjct: 58 RIPGKCSHFGKCGGCLWQGLRYREQLKLKEEIFKRITGIEAEIKGSPRIWYFRNISNFII 117 Query: 136 NYLPKTQQLQMGFRKAG-SSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMR---HLGH 191 +GF++ G +V++++CPI + + L ++ L G Sbjct: 118 TVNG------IGFKEFGMPKTVVNIRECPIFSERTPKYLKALKDFLRESNLKPWNWREGD 171 Query: 192 VELVQAT----SGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSE------ILET 241 V +Q +G +M+ + +E F+ ++ + L D + Sbjct: 172 VHYLQVREGKFTGEVMVNIIAHVPLNYREALMEAFNFADSIYWSLKADKKDDPRGFPTLV 231 Query: 242 VSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301 + E+ G+ P F Q N+ ++ ++ + VLDL+ G+G + Sbjct: 232 LGNEVIREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFCEGSK---VLDLYSGIGTLS 288 Query: 302 LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 L LA + V GVE VE +++A +N + N TF E+ G++ ++ Sbjct: 289 LYLAKRGFEVTGVEVNGTSVEMAKRSAEINSI-NATFIQGKAED------AELEGYETLI 341 Query: 362 LDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTG 421 +DP R G ++I+K P ++YVSCNP D L Y + ++DMFPHT Sbjct: 342 VDPPRKGLKEFSRRIVKKGPNTLIYVSCNPLRFILDYRNYLSEAYKVDDALLIDMFPHTP 401 Query: 422 HLESMVLFSR 431 H+E+++ R Sbjct: 402 HIEAVIKLVR 411 >UniRef50_B9R3Z1 tRNA (Uracil-5-)-methyltransferase superfamily n=2 Tax=Rhodobacteraceae RepID=B9R3Z1_9RHOB Length = 410 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 117/419 (27%), Positives = 181/419 (43%), Gaps = 21/419 (5%) Query: 19 VSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 + + +L G G+A +++ G LP E E + Q R + LS SP+R Sbjct: 6 LEITELGHRGDGIAFTGTGPVYVAGGLPGETVEAEI-----QNGRVQNPDYLSQSPDRIE 60 Query: 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMK-----HDVSEVIADVPWGYRRRARL 133 P C H+ CGGC QH + K + + +K +V++ IA G RRRA Sbjct: 61 PVCRHYAACGGCSVQHLAEAPYLSWKRNLVEKALKTQGIDAEVAQTIAATEGG-RRRA-- 117 Query: 134 SLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVE 193 + + + +G+ + S +VD+ +CP+L P + + L +++ L + Sbjct: 118 AFTATRAGRAVLLGYHEKASHKLVDISECPVLDPSITSALKGLKSLAADLVPKNGELRIT 177 Query: 194 LVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNG 253 ++ TSG + L + + L L+ + E+L V P D G Sbjct: 178 VLSTTSGLDVAFDKADKAYDRKIPALSQKTVELDLAR-LSVNGEVLLEV--RPPLLDMGG 234 Query: 254 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313 L P F Q Q + + V V DLF G+G F L LA A +V Sbjct: 235 TGLVPPPGGFTQATLAAEQALSELVV--AGVGKAKTVADLFSGVGTFALRLARTA-NVHA 291 Query: 314 VEGVPALVEKGQQNARL-NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGV 372 VEG A + ++ R GL+ VTF +L P F V+ DP RAGA Sbjct: 292 VEGDSAAIAALDRSLRKPQGLKKVTFEKRDLFRR-PLVPEELEPFAAVVFDPPRAGAQAQ 350 Query: 373 MQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 + + K + IV VSCNPATLARD L+ GY + + +D F + H+E++ + R Sbjct: 351 AEMLAKSKVKTIVAVSCNPATLARDLRILIDGGYALHTVTPVDQFHFSPHIEAVAVLKR 409 >UniRef50_B9XDW9 RNA methyltransferase, TrmA family n=1 Tax=bacterium Ellin514 RepID=B9XDW9_9BACT Length = 440 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 114/436 (26%), Positives = 181/436 (41%), Gaps = 71/436 (16%) Query: 9 RRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVR 68 + TV+ +D+ G+GVAR + +F+P ++ E AEV +TE KK++AR K+VR Sbjct: 59 QNLEVGSRCTVTFHDIAFGGEGVARVDEFVVFVPFVMVGEEAEVEITEVKKRFARGKLVR 118 Query: 69 RLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKH--------DVSEVI 120 L SPER P C +FG CGGCQ QH Q K + L + + Sbjct: 119 VLKTSPERVKPLCQYFGDCGGCQYQHMDYAAQLLMKHKQICDLFERIGGIDPKVVGPVIP 178 Query: 121 ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL 180 P+GYR R + + Q L +GF +A + +VD+++C I P + + Sbjct: 179 CPQPYGYRNRIMIRSQWDKFKQGLNIGFIRADNRLVVDIEECKISEPAVNEQIQ------ 232 Query: 181 GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILE 240 HV G + ++ AP Sbjct: 233 ----------HVRKNPPPKGGIKVVLRVAPE----------------------------- 253 Query: 241 TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF 300 F Q N + ++V A ++L ++D++CG+G F Sbjct: 254 --------------GWEVPRDSFFQNNFFLLPELVGVARQFLKDSGSRFLVDVYCGVGFF 299 Query: 301 TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA-KNGFDK 359 +L L VGVE ++ ++NA L+N F EE + Sbjct: 300 SLELGDLVEGFVGVELDQLAIKAARRNAEKRNLKNGEFVTGRAEEMLPGLMQRFSPEATT 359 Query: 360 VLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAG-YTIARLAMLDMF 417 VL+DP R G ++ + + P +++YVSC+PAT+ARD L G + + ++ DMF Sbjct: 360 VLIDPPRTGCLPESLELLRQTRPNQLIYVSCHPATMARDLNVLCAEGVFELVKVIPCDMF 419 Query: 418 PHTGHLESMVLFSRVK 433 P T H+E + R+K Sbjct: 420 PQTAHVECVADL-RLK 434 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.157 0.483 Lambda K H 0.267 0.0481 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,758,107,419 Number of Sequences: 3077464 Number of extensions: 134235682 Number of successful extensions: 390786 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 5195 Number of HSP's successfully gapped in prelim test: 8536 Number of HSP's that attempted gapping in prelim test: 371656 Number of HSP's gapped (non-prelim): 14968 length of query: 433 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 301 effective length of database: 634,171,108 effective search space: 190885503508 effective search space used: 190885503508 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 95 (41.0 bits)